
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0367TS393_4-D1
# Molecule2: number of CA atoms  123 (  996),  selected  123 , name T0367_D1.pdb
# PARAMETERS: T0367TS393_4-D1.T0367_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53        71 - 123         4.85    15.43
  LCS_AVERAGE:     32.66

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        98 - 123         1.90    16.15
  LCS_AVERAGE:     16.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    35.13
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.66    16.22
  LCS_AVERAGE:     14.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     M       1     M       1      3   25   30     0    3    3    3    3    4    5    9   13   15   18   27   30   30   33   34   34   35   36   37 
LCS_GDT     D       2     D       2     24   25   30     7   16   22   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E       3     E       3     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     L       4     L       4     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E       5     E       5     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     L       6     L       6     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     R       7     R       7     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     I       8     I       8     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     R       9     R       9     24   25   30    14   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     K      10     K      10     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     A      11     A      11     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   37 
LCS_GDT     E      12     E      12     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   34   35   36   39 
LCS_GDT     K      13     K      13     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   38   48   50   54   60 
LCS_GDT     L      14     L      14     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   33   34   48   50   53   59 
LCS_GDT     V      15     V      15     24   25   30    16   24   24   25   25   25   26   26   26   28   29   29   32   33   34   38   48   50   54   63 
LCS_GDT     Q      16     Q      16     24   25   30    16   24   24   25   25   25   26   26   26   28   29   30   38   44   53   54   61   64   68   71 
LCS_GDT     D      17     D      17     24   25   30    16   24   24   25   25   25   26   26   37   42   46   49   56   59   61   64   65   68   69   72 
LCS_GDT     A      18     A      18     24   25   30    16   24   24   25   25   25   26   31   37   42   46   50   56   59   61   64   65   68   69   75 
LCS_GDT     K      19     K      19     24   25   30    16   24   24   25   25   25   30   35   39   42   46   50   56   59   61   64   65   68   73   82 
LCS_GDT     K      20     K      20     24   25   31    16   24   24   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     E      21     E      21     24   25   31    16   24   24   25   25   25   26   26   33   39   44   49   56   59   61   64   68   76   83   87 
LCS_GDT     F      22     F      22     24   25   31    16   24   24   25   25   25   26   28   33   40   44   50   56   59   61   64   68   76   83   87 
LCS_GDT     E      23     E      23     24   25   31    16   24   24   25   25   25   26   26   26   28   29   35   47   49   55   61   68   76   83   87 
LCS_GDT     M      24     M      24     24   25   31    16   24   24   25   25   25   26   26   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     G      25     G      25     24   25   31    16   24   24   25   25   25   26   26   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     L      26     L      26     23   25   31    14   23   23   23   23   23   23   25   26   28   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     Y      27     Y      27     23   25   31    22   23   23   23   23   23   23   25   26   26   29   32   41   47   54   61   68   76   83   87 
LCS_GDT     E      28     E      28     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   49   57   65   70   79   86 
LCS_GDT     R      29     R      29     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   46   54   60   67   75   82   87 
LCS_GDT     C      30     C      30     23   25   31    22   23   23   23   23   23   23   25   26   26   28   34   41   48   54   61   68   76   83   87 
LCS_GDT     C      31     C      31     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   54   60   67   75   83   87 
LCS_GDT     S      32     S      32     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   39   46   49   55   64   70   79   86 
LCS_GDT     T      33     T      33     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     A      34     A      34     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     Y      35     Y      35     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   39   46   54   60   67   75   83   87 
LCS_GDT     Y      36     Y      36     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   47   54   60   68   75   83   87 
LCS_GDT     A      37     A      37     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     M      38     M      38     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   48   54   61   68   76   83   87 
LCS_GDT     F      39     F      39     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   47   54   60   68   75   83   87 
LCS_GDT     H      40     H      40     23   25   31    22   23   23   23   23   23   23   25   26   26   30   34   41   47   54   61   68   76   83   87 
LCS_GDT     A      41     A      41     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   48   54   61   68   76   83   87 
LCS_GDT     A      42     A      42     23   25   31    22   23   23   23   23   23   23   25   26   27   29   34   41   48   54   61   68   76   83   87 
LCS_GDT     K      43     K      43     23   25   31    22   23   23   23   23   23   23   25   26   26   27   32   41   47   54   61   68   76   83   87 
LCS_GDT     A      44     A      44     23   25   31    22   23   23   23   23   23   23   25   26   27   31   34   41   47   54   61   68   76   83   87 
LCS_GDT     M      45     M      45     23   25   31    22   23   23   23   23   23   23   25   26   27   30   34   41   48   54   61   68   76   83   87 
LCS_GDT     L      46     L      46     23   25   31    22   23   23   23   23   23   23   25   26   26   27   33   41   47   54   61   68   76   83   87 
LCS_GDT     L      47     L      47     23   25   31    22   23   23   23   23   23   23   25   26   26   27   32   41   47   54   61   68   76   83   87 
LCS_GDT     G      48     G      48     23   25   31    22   23   23   23   23   23   23   25   26   27   30   34   41   47   54   60   68   76   83   87 
LCS_GDT     Y      49     Y      49      3   25   31     3    3    4    5    8   14   21   25   26   27   30   35   41   48   54   61   68   76   83   87 
LCS_GDT     G      50     G      50      4    8   31     3    4    5    8    9   11   13   18   24   27   33   37   47   52   56   61   68   76   83   87 
LCS_GDT     R      51     R      51      4    8   31     3    4    5    8   11   13   14   18   24   27   33   41   47   53   59   61   68   76   83   87 
LCS_GDT     D      52     D      52      4    8   30     3    4    5    8   11   13   14   18   24   27   33   41   47   53   59   61   68   76   83   87 
LCS_GDT     S      53     S      53      4    8   30     3    4    4    6   11   12   14   18   22   26   30   41   47   53   59   61   68   76   83   87 
LCS_GDT     K      54     K      54      4    8   30     3    4    5    7   11   14   16   21   26   29   40   46   50   57   61   63   68   76   83   87 
LCS_GDT     T      55     T      55      4    8   30     3    4    8   10   13   16   19   22   32   40   44   50   56   59   61   64   68   76   83   87 
LCS_GDT     H      56     H      56      4   12   30     3    4    8   10   12   16   19   22   32   40   44   50   56   59   61   64   68   76   83   87 
LCS_GDT     R      57     R      57     11   14   30    10   11   11   11   13   17   19   26   27   38   45   50   56   59   61   64   67   74   83   87 
LCS_GDT     G      58     G      58     11   14   30    10   11   11   11   17   18   23   27   35   42   46   50   56   59   61   64   65   68   81   87 
LCS_GDT     T      59     T      59     11   14   30    10   11   11   11   13   14   15   26   29   34   45   50   56   59   61   64   65   72   83   87 
LCS_GDT     I      60     I      60     11   14   30    10   11   11   11   13   14   14   19   26   32   44   50   56   59   61   64   68   76   83   87 
LCS_GDT     Y      61     Y      61     11   14   30    10   11   11   11   13   14   14   19   27   32   44   50   56   59   61   64   67   76   83   87 
LCS_GDT     L      62     L      62     11   14   30    10   11   11   11   13   14   15   19   26   32   39   50   56   59   61   64   65   72   83   87 
LCS_GDT     I      63     I      63     11   14   30    10   11   11   11   13   14   14   18   21   27   32   37   47   57   61   64   65   76   83   87 
LCS_GDT     W      64     W      64     11   14   30    10   11   11   11   13   14   14   18   22   27   32   37   47   57   61   64   68   76   83   87 
LCS_GDT     E      65     E      65     11   14   30    10   11   11   11   13   14   14   18   22   31   35   44   52   58   61   64   68   76   83   87 
LCS_GDT     C      66     C      66     11   14   30    10   11   11   11   13   14   14   15   21   27   31   34   39   42   47   62   64   68   81   87 
LCS_GDT     R      67     R      67     11   14   30     9   11   11   11   13   14   14   18   21   27   31   34   39   45   48   55   63   72   83   87 
LCS_GDT     E      68     E      68      5   14   30     5    5    5    9   13   14   14   15   21   27   31   34   38   45   48   55   63   72   83   87 
LCS_GDT     E      69     E      69      5   14   30     5    5    5   11   13   14   14   18   21   27   31   34   38   45   48   55   63   72   83   87 
LCS_GDT     L      70     L      70      5   14   30     5    5    6    9   12   14   14   15   17   24   25   28   33   35   38   50   55   66   79   87 
LCS_GDT     G      71     G      71      5    6   53     4    4    6    6    7   11   12   16   21   27   31   34   38   45   52   57   67   76   83   87 
LCS_GDT     L      72     L      72      5    5   53     3    4    6    8   10   15   18   21   25   30   39   45   52   58   61   64   68   76   83   87 
LCS_GDT     S      73     S      73      5   17   53     4    4    6    6   10   12   16   19   30   38   44   49   56   59   61   64   68   76   83   87 
LCS_GDT     D      74     D      74     16   17   53    11   16   16   16   18   21   22   26   30   36   44   49   56   59   61   63   67   75   81   87 
LCS_GDT     D      75     D      75     16   17   53    11   16   16   16   18   21   22   25   30   36   41   49   56   59   61   63   68   76   82   87 
LCS_GDT     D      76     D      76     16   17   53    11   16   16   16   18   21   23   28   35   40   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     C      77     C      77     16   17   53    11   16   16   16   18   21   24   34   37   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     S      78     S      78     16   17   53    12   16   16   16   18   25   31   34   37   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     K      79     K      79     16   17   53    12   16   16   16   18   21   31   34   37   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     L      80     L      80     16   17   53    12   16   22   26   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     S      81     S      81     16   17   53    12   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     R      82     R      82     16   17   53    12   16   16   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     A      83     A      83     16   17   53    12   16   16   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     F      84     F      84     16   17   53    12   19   24   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     D      85     D      85     16   17   53    12   16   16   27   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     L      86     L      86     16   17   53    12   16   16   16   18   21   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     R      87     R      87     16   17   53    12   16   16   16   21   29   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     E      88     E      88     16   17   53    12   16   16   16   21   26   32   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     E      89     E      89     16   17   53    12   16   16   16   18   21   24   34   39   41   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     S      90     S      90      3   17   53     3    3    4    4    5    9   15   23   28   37   43   49   56   59   61   64   68   76   82   87 
LCS_GDT     D      91     D      91      4    6   53     3    4    4    5    7    9   13   17   22   28   37   42   49   56   61   63   67   75   81   87 
LCS_GDT     Y      92     Y      92      4    7   53     3    4    4   16   18   21   24   32   38   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     G      93     G      93      4    7   53     3    6    9   14   18   26   31   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     I      94     I      94      4    7   53     3    4    8   12   18   24   31   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     Y      95     Y      95      3    7   53     3    3    4   10   13   17   21   27   36   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     K      96     K      96      3    7   53     3    3    8   11   14   19   24   32   38   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     E      97     E      97      3    7   53     3    3    4    5   13   17   19   30   36   42   46   50   56   59   61   64   67   76   82   87 
LCS_GDT     V      98     V      98      3   26   53     3    3    4    8   13   26   31   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     S      99     S      99     24   26   53     3    4   25   27   30   31   33   35   39   42   46   49   55   59   61   64   68   76   83   87 
LCS_GDT     K     100     K     100     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     D     101     D     101     24   26   53    15   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     L     102     L     102     24   26   53    15   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     A     103     A     103     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     I     104     I     104     24   26   53    16   24   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     K     105     K     105     24   26   53    15   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     I     106     I     106     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     L     107     L     107     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     K     108     K     108     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     D     109     D     109     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     A     110     A     110     24   26   53    15   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   68   76   83   87 
LCS_GDT     E     111     E     111     24   26   53    15   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   76   83   87 
LCS_GDT     I     112     I     112     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   76   83   87 
LCS_GDT     F     113     F     113     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   76   83   87 
LCS_GDT     V     114     V     114     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   68   77   85 
LCS_GDT     Q     115     Q     115     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   68   70   82 
LCS_GDT     K     116     K     116     24   26   53    16   23   25   28   30   31   33   35   39   42   46   50   56   59   61   64   65   68   73   82 
LCS_GDT     A     117     A     117     24   26   53    16   23   25   28   30   31   33   35   39   42   46   49   55   59   61   64   65   68   69   75 
LCS_GDT     K     118     K     118     24   26   53    16   23   25   28   30   31   33   35   39   42   46   49   54   59   61   64   65   68   69   71 
LCS_GDT     N     119     N     119     24   26   53    16   23   25   28   30   31   33   35   39   42   46   49   53   58   61   64   65   68   69   71 
LCS_GDT     A     120     A     120     24   26   53    16   23   25   28   30   31   33   35   39   42   46   49   53   58   61   64   65   68   69   71 
LCS_GDT     V     121     V     121     24   26   53    12   23   25   28   30   31   33   35   39   42   46   49   52   58   61   64   65   68   69   71 
LCS_GDT     N     122     N     122     24   26   53    12   22   25   28   30   31   33   35   39   42   46   48   52   58   61   64   65   68   69   71 
LCS_GDT     K     123     K     123      3   26   53     0    3    3    3    5    5    5    9   15   19   33   39   42   50   53   59   64   66   69   70 
LCS_AVERAGE  LCS_A:  21.19  (  14.25   16.67   32.66 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     24     25     28     30     31     33     35     39     42     46     50     56     59     61     64     68     76     83     87 
GDT PERCENT_CA  17.89  19.51  20.33  22.76  24.39  25.20  26.83  28.46  31.71  34.15  37.40  40.65  45.53  47.97  49.59  52.03  55.28  61.79  67.48  70.73
GDT RMS_LOCAL    0.29   0.60   0.67   1.00   1.14   1.24   1.58   1.87   2.57   3.04   3.35   4.25   4.53   4.65   4.71   5.04   6.41   6.79   7.23   7.26
GDT RMS_ALL_CA  27.77  35.08  16.23  16.51  16.46  16.48  16.49  16.44  16.10  15.84  15.65  15.19  15.21  15.20  15.24  15.17  17.92  17.58  17.67  17.57

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         48.764
LGA    D       2      D       2         48.355
LGA    E       3      E       3         46.026
LGA    L       4      L       4         44.731
LGA    E       5      E       5         40.948
LGA    L       6      L       6         36.713
LGA    R       7      R       7         35.741
LGA    I       8      I       8         33.443
LGA    R       9      R       9         29.142
LGA    K      10      K      10         26.322
LGA    A      11      A      11         25.055
LGA    E      12      E      12         22.123
LGA    K      13      K      13         17.343
LGA    L      14      L      14         16.113
LGA    V      15      V      15         13.894
LGA    Q      16      Q      16         10.409
LGA    D      17      D      17          6.909
LGA    A      18      A      18          6.417
LGA    K      19      K      19          3.931
LGA    K      20      K      20          2.722
LGA    E      21      E      21          6.183
LGA    F      22      F      22          5.459
LGA    E      23      E      23          9.958
LGA    M      24      M      24         13.116
LGA    G      25      G      25         14.907
LGA    L      26      L      26         11.361
LGA    Y      27      Y      27         12.674
LGA    E      28      E      28         14.020
LGA    R      29      R      29         11.730
LGA    C      30      C      30         11.085
LGA    C      31      C      31         12.328
LGA    S      32      S      32         11.135
LGA    T      33      T      33         11.576
LGA    A      34      A      34         13.401
LGA    Y      35      Y      35         11.749
LGA    Y      36      Y      36         11.572
LGA    A      37      A      37         15.545
LGA    M      38      M      38         15.372
LGA    F      39      F      39         12.189
LGA    H      40      H      40         15.842
LGA    A      41      A      41         19.490
LGA    A      42      A      42         16.558
LGA    K      43      K      43         15.366
LGA    A      44      A      44         21.508
LGA    M      45      M      45         22.420
LGA    L      46      L      46         17.896
LGA    L      47      L      47         21.004
LGA    G      48      G      48         26.594
LGA    Y      49      Y      49         25.346
LGA    G      50      G      50         24.300
LGA    R      51      R      51         21.968
LGA    D      52      D      52         21.708
LGA    S      53      S      53         20.757
LGA    K      54      K      54         17.226
LGA    T      55      T      55         12.680
LGA    H      56      H      56         11.661
LGA    R      57      R      57         11.751
LGA    G      58      G      58         10.881
LGA    T      59      T      59         10.478
LGA    I      60      I      60         12.071
LGA    Y      61      Y      61         12.731
LGA    L      62      L      62         11.835
LGA    I      63      I      63         13.318
LGA    W      64      W      64         14.998
LGA    E      65      E      65         14.272
LGA    C      66      C      66         14.790
LGA    R      67      R      67         17.334
LGA    E      68      E      68         21.487
LGA    E      69      E      69         20.026
LGA    L      70      L      70         18.493
LGA    G      71      G      71         17.800
LGA    L      72      L      72         12.475
LGA    S      73      S      73         12.556
LGA    D      74      D      74         11.386
LGA    D      75      D      75         10.295
LGA    D      76      D      76          8.735
LGA    C      77      C      77          7.649
LGA    S      78      S      78          6.503
LGA    K      79      K      79          5.513
LGA    L      80      L      80          3.575
LGA    S      81      S      81          3.027
LGA    R      82      R      82          2.936
LGA    A      83      A      83          2.352
LGA    F      84      F      84          0.829
LGA    D      85      D      85          1.595
LGA    L      86      L      86          3.509
LGA    R      87      R      87          3.075
LGA    E      88      E      88          3.819
LGA    E      89      E      89          5.259
LGA    S      90      S      90          6.152
LGA    D      91      D      91          9.279
LGA    Y      92      Y      92          7.395
LGA    G      93      G      93          5.610
LGA    I      94      I      94          6.575
LGA    Y      95      Y      95          8.587
LGA    K      96      K      96          7.424
LGA    E      97      E      97          8.005
LGA    V      98      V      98          4.779
LGA    S      99      S      99          2.659
LGA    K     100      K     100          1.382
LGA    D     101      D     101          0.995
LGA    L     102      L     102          0.968
LGA    A     103      A     103          1.088
LGA    I     104      I     104          1.034
LGA    K     105      K     105          0.982
LGA    I     106      I     106          1.114
LGA    L     107      L     107          0.945
LGA    K     108      K     108          1.173
LGA    D     109      D     109          1.311
LGA    A     110      A     110          1.075
LGA    E     111      E     111          1.022
LGA    I     112      I     112          1.246
LGA    F     113      F     113          1.035
LGA    V     114      V     114          0.309
LGA    Q     115      Q     115          0.963
LGA    K     116      K     116          0.840
LGA    A     117      A     117          0.491
LGA    K     118      K     118          1.145
LGA    N     119      N     119          1.132
LGA    A     120      A     120          0.431
LGA    V     121      V     121          1.855
LGA    N     122      N     122          2.538
LGA    K     123      K     123          7.544

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     35    1.87    30.691    27.156     1.778

LGA_LOCAL      RMSD =  1.868  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.219  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 14.856  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.469950 * X  +   0.359351 * Y  +  -0.806234 * Z  +  36.637333
  Y_new =  -0.049777 * X  +   0.901138 * Y  +   0.430666 * Z  +  35.212288
  Z_new =   0.881288 * X  +   0.242523 * Y  +  -0.405602 * Z  +  31.049454 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.602695   -0.538898  [ DEG:   149.1234    -30.8766 ]
  Theta =  -1.078582   -2.063011  [ DEG:   -61.7982   -118.2018 ]
  Phi   =  -3.036067    0.105526  [ DEG:  -173.9538      6.0462 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_4-D1                               
REMARK     2: T0367_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_4-D1.T0367_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   35   1.87  27.156    14.86
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_4-D1
PFRMAT TS
TARGET T0367
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       5.479   8.250  35.582  1.00 25.00           C
ATOM      2  CA  ASP     2       8.267   8.070  38.204  1.00 25.00           C
ATOM      3  CA  GLU     3      10.415   7.575  35.073  1.00 25.00           C
ATOM      4  CA  LEU     4       9.472  11.078  33.843  1.00 25.00           C
ATOM      5  CA  GLU     5      10.398  12.553  37.254  1.00 25.00           C
ATOM      6  CA  LEU     6      13.767  10.735  37.152  1.00 25.00           C
ATOM      7  CA  ARG     7      14.418  12.088  33.629  1.00 25.00           C
ATOM      8  CA  ILE     8      13.571  15.632  34.807  1.00 25.00           C
ATOM      9  CA  ARG     9      15.961  15.246  37.773  1.00 25.00           C
ATOM     10  CA  LYS    10      18.726  14.033  35.417  1.00 25.00           C
ATOM     11  CA  ALA    11      18.122  17.038  33.122  1.00 25.00           C
ATOM     12  CA  GLU    12      18.314  19.403  36.127  1.00 25.00           C
ATOM     13  CA  LYS    13      21.599  17.774  37.231  1.00 25.00           C
ATOM     14  CA  LEU    14      23.014  18.172  33.695  1.00 25.00           C
ATOM     15  CA  VAL    15      21.985  21.860  33.671  1.00 25.00           C
ATOM     16  CA  GLN    16      23.675  22.379  37.069  1.00 25.00           C
ATOM     17  CA  ASP    17      26.864  20.707  35.764  1.00 25.00           C
ATOM     18  CA  ALA    18      26.814  22.966  32.673  1.00 25.00           C
ATOM     19  CA  LYS    19      26.390  26.050  34.903  1.00 25.00           C
ATOM     20  CA  LYS    20      29.335  24.917  37.073  1.00 25.00           C
ATOM     21  CA  GLU    21      31.484  24.423  33.942  1.00 25.00           C
ATOM     22  CA  PHE    22      30.540  27.925  32.712  1.00 25.00           C
ATOM     23  CA  GLU    23      31.466  29.399  36.122  1.00 25.00           C
ATOM     24  CA  MET    24      34.836  27.583  36.020  1.00 25.00           C
ATOM     25  CA  GLY    25      35.487  28.936  32.497  1.00 25.00           C
ATOM     26  CA  LEU    26      34.638  32.480  33.676  1.00 25.00           C
ATOM     27  CA  TYR    27      37.030  32.093  36.641  1.00 25.00           C
ATOM     28  CA  GLU    28      39.795  30.880  34.286  1.00 25.00           C
ATOM     29  CA  ARG    29      39.191  33.885  31.990  1.00 25.00           C
ATOM     30  CA  CYS    30      39.383  36.251  34.996  1.00 25.00           C
ATOM     31  CA  CYS    31      42.668  34.621  36.100  1.00 25.00           C
ATOM     32  CA  SER    32      44.082  35.019  32.563  1.00 25.00           C
ATOM     33  CA  THR    33      43.054  38.708  32.540  1.00 25.00           C
ATOM     34  CA  ALA    34      44.744  39.226  35.937  1.00 25.00           C
ATOM     35  CA  TYR    35      47.933  37.554  34.633  1.00 25.00           C
ATOM     36  CA  TYR    36      47.882  39.813  31.541  1.00 25.00           C
ATOM     37  CA  ALA    37      47.459  42.897  33.772  1.00 25.00           C
ATOM     38  CA  MET    38      50.404  41.763  35.942  1.00 25.00           C
ATOM     39  CA  PHE    39      52.553  41.270  32.810  1.00 25.00           C
ATOM     40  CA  HIS    40      51.608  44.773  31.580  1.00 25.00           C
ATOM     41  CA  ALA    41      52.535  46.246  34.992  1.00 25.00           C
ATOM     42  CA  ALA    42      55.905  44.430  34.889  1.00 25.00           C
ATOM     43  CA  LYS    43      56.555  45.783  31.365  1.00 25.00           C
ATOM     44  CA  ALA    44      55.707  49.328  32.544  1.00 25.00           C
ATOM     45  CA  MET    45      58.099  48.939  35.510  1.00 25.00           C
ATOM     46  CA  LEU    46      60.864  47.727  33.154  1.00 25.00           C
ATOM     47  CA  LEU    47      60.260  50.733  30.859  1.00 25.00           C
ATOM     48  CA  GLY    48      60.452  53.098  33.865  1.00 25.00           C
ATOM     49  CA  TYR    49      56.912  53.904  34.964  1.00 25.00           C
ATOM     50  CA  GLY    50      53.705  53.949  37.105  1.00 25.00           C
ATOM     51  CA  ARG    51      50.072  53.644  38.291  1.00 25.00           C
ATOM     52  CA  ASP    52      47.128  54.457  40.497  1.00 25.00           C
ATOM     53  CA  SER    53      43.881  55.098  42.394  1.00 25.00           C
ATOM     54  CA  LYS    54      41.679  52.279  43.669  1.00 25.00           C
ATOM     55  CA  THR    55      40.154  49.505  41.521  1.00 25.00           C
ATOM     56  CA  HIS    56      37.617  47.318  39.853  1.00 25.00           C
ATOM     57  CA  ARG    57      38.978  43.891  40.552  1.00 25.00           C
ATOM     58  CA  GLY    58      42.169  42.814  38.728  1.00 25.00           C
ATOM     59  CA  THR    59      40.072  41.120  36.008  1.00 25.00           C
ATOM     60  CA  ILE    60      37.968  44.297  35.616  1.00 25.00           C
ATOM     61  CA  TYR    61      41.155  46.398  35.312  1.00 25.00           C
ATOM     62  CA  LEU    62      42.510  44.003  32.649  1.00 25.00           C
ATOM     63  CA  ILE    63      39.212  44.243  30.719  1.00 25.00           C
ATOM     64  CA  TRP    64      39.361  48.067  30.892  1.00 25.00           C
ATOM     65  CA  GLU    65      42.966  48.009  29.603  1.00 25.00           C
ATOM     66  CA  CYS    66      41.924  45.718  26.718  1.00 25.00           C
ATOM     67  CA  ARG    67      39.038  48.082  25.849  1.00 25.00           C
ATOM     68  CA  GLU    68      41.442  51.064  25.877  1.00 25.00           C
ATOM     69  CA  GLU    69      43.851  49.175  23.575  1.00 25.00           C
ATOM     70  CA  LEU    70      41.731  47.648  20.834  1.00 25.00           C
ATOM     71  CA  GLY    71      44.792  47.832  18.586  1.00 25.00           C
ATOM     72  CA  LEU    72      45.909  44.825  20.650  1.00 25.00           C
ATOM     73  CA  SER    73      49.593  43.951  20.626  1.00 25.00           C
ATOM     74  CA  ASP    74      50.456  41.102  22.994  1.00 25.00           C
ATOM     75  CA  ASP    75      47.803  39.169  21.020  1.00 25.00           C
ATOM     76  CA  ASP    76      47.335  36.760  23.960  1.00 25.00           C
ATOM     77  CA  CYS    77      46.944  39.721  26.358  1.00 25.00           C
ATOM     78  CA  SER    78      44.342  41.294  24.029  1.00 25.00           C
ATOM     79  CA  LYS    79      42.431  37.980  23.884  1.00 25.00           C
ATOM     80  CA  LEU    80      42.491  37.749  27.707  1.00 25.00           C
ATOM     81  CA  SER    81      41.177  41.337  27.968  1.00 25.00           C
ATOM     82  CA  ARG    82      38.367  40.513  25.498  1.00 25.00           C
ATOM     83  CA  ALA    83      37.452  37.404  27.539  1.00 25.00           C
ATOM     84  CA  PHE    84      37.374  39.500  30.744  1.00 25.00           C
ATOM     85  CA  ASP    85      35.111  42.073  29.034  1.00 25.00           C
ATOM     86  CA  LEU    86      32.770  39.276  27.867  1.00 25.00           C
ATOM     87  CA  ARG    87      32.640  37.866  31.426  1.00 25.00           C
ATOM     88  CA  GLU    88      31.820  41.345  32.800  1.00 25.00           C
ATOM     89  CA  GLU    89      29.029  41.739  30.208  1.00 25.00           C
ATOM     90  CA  SER    90      28.035  44.726  32.279  1.00 25.00           C
ATOM     91  CA  ASP    91      26.650  46.975  34.994  1.00 25.00           C
ATOM     92  CA  TYR    92      25.591  43.739  36.623  1.00 25.00           C
ATOM     93  CA  GLY    93      23.727  45.583  39.428  1.00 25.00           C
ATOM     94  CA  ILE    94      20.278  44.011  38.706  1.00 25.00           C
ATOM     95  CA  TYR    95      17.266  42.267  37.076  1.00 25.00           C
ATOM     96  CA  LYS    96      16.578  43.182  33.418  1.00 25.00           C
ATOM     97  CA  GLU    97      15.634  40.559  30.862  1.00 25.00           C
ATOM     98  CA  VAL    98      19.405  40.044  30.681  1.00 25.00           C
ATOM     99  CA  SER    99      21.317  37.442  32.738  1.00 25.00           C
ATOM    100  CA  LYS   100      22.057  34.827  30.084  1.00 25.00           C
ATOM    101  CA  ASP   101      22.953  35.285  26.389  1.00 25.00           C
ATOM    102  CA  LEU   102      26.014  37.369  27.363  1.00 25.00           C
ATOM    103  CA  ALA   103      27.102  34.659  29.839  1.00 25.00           C
ATOM    104  CA  ILE   104      26.709  31.986  27.124  1.00 25.00           C
ATOM    105  CA  LYS   105      28.804  34.096  24.710  1.00 25.00           C
ATOM    106  CA  ILE   106      31.516  34.506  27.383  1.00 25.00           C
ATOM    107  CA  LEU   107      31.526  30.725  27.988  1.00 25.00           C
ATOM    108  CA  LYS   108      31.858  30.098  24.225  1.00 25.00           C
ATOM    109  CA  ASP   109      34.780  32.569  24.046  1.00 25.00           C
ATOM    110  CA  ALA   110      36.480  30.808  26.991  1.00 25.00           C
ATOM    111  CA  GLU   111      36.015  27.420  25.266  1.00 25.00           C
ATOM    112  CA  ILE   112      37.522  28.828  22.039  1.00 25.00           C
ATOM    113  CA  PHE   113      40.511  30.197  24.004  1.00 25.00           C
ATOM    114  CA  VAL   114      41.012  26.784  25.668  1.00 25.00           C
ATOM    115  CA  GLN   115      40.897  25.072  22.244  1.00 25.00           C
ATOM    116  CA  LYS   116      43.482  27.550  20.889  1.00 25.00           C
ATOM    117  CA  ALA   117      45.746  26.873  23.903  1.00 25.00           C
ATOM    118  CA  LYS   118      45.421  23.101  23.330  1.00 25.00           C
ATOM    119  CA  ASN   119      46.317  23.558  19.635  1.00 25.00           C
ATOM    120  CA  ALA   120      49.378  25.643  20.610  1.00 25.00           C
ATOM    121  CA  VAL   121      50.466  22.931  23.086  1.00 25.00           C
ATOM    122  CA  ASN   122      50.073  20.260  20.371  1.00 25.00           C
ATOM    123  CA  LYS   123      52.963  17.783  19.854  1.00 25.00           C
TER
END
