
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0367TS393_5-D1
# Molecule2: number of CA atoms  123 (  996),  selected  123 , name T0367_D1.pdb
# PARAMETERS: T0367TS393_5-D1.T0367_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    58        53 - 110         4.96    17.92
  LCS_AVERAGE:     37.74

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         1 - 26          1.87    35.89
  LONGEST_CONTINUOUS_SEGMENT:    26        70 - 95          1.89    21.03
  LCS_AVERAGE:     18.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    36.26
  LCS_AVERAGE:     14.59

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     M       1     M       1      3   26   30     3    3    3    7   12   19   25   25   25   25   26   27   29   29   31   32   33   36   37   39 
LCS_GDT     D       2     D       2     24   26   30     7   16   20   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     E       3     E       3     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     L       4     L       4     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     E       5     E       5     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     L       6     L       6     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     R       7     R       7     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     I       8     I       8     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     R       9     R       9     24   26   30    14   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     K      10     K      10     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     A      11     A      11     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     E      12     E      12     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     K      13     K      13     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   39   41   45 
LCS_GDT     L      14     L      14     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   36   37   39 
LCS_GDT     V      15     V      15     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   30   30   31   33   34   39   48   50 
LCS_GDT     Q      16     Q      16     24   26   30    16   22   23   24   24   24   25   25   25   26   31   35   41   45   47   51   52   53   56   59 
LCS_GDT     D      17     D      17     24   26   30    16   22   23   24   24   24   25   25   25   26   27   36   40   43   45   51   52   55   57   60 
LCS_GDT     A      18     A      18     24   26   30    16   22   23   24   24   24   25   25   25   26   27   29   34   43   45   51   52   55   57   60 
LCS_GDT     K      19     K      19     24   26   30    16   22   23   24   24   24   25   25   28   36   40   43   46   47   51   53   57   61   65   75 
LCS_GDT     K      20     K      20     24   26   31    16   22   23   24   24   24   25   25   26   34   40   43   46   47   51   53   57   66   74   79 
LCS_GDT     E      21     E      21     24   26   31    16   22   23   24   24   24   25   25   25   26   27   31   37   42   46   53   57   66   74   79 
LCS_GDT     F      22     F      22     24   26   31    16   22   23   24   24   24   25   25   25   26   27   36   41   45   50   53   59   66   74   79 
LCS_GDT     E      23     E      23     24   26   31    16   22   23   24   24   24   25   25   26   26   27   29   32   41   50   53   59   66   74   79 
LCS_GDT     M      24     M      24     24   26   31    16   22   23   24   24   24   25   25   25   26   27   29   36   40   45   49   57   66   74   79 
LCS_GDT     G      25     G      25     24   26   32    16   22   23   24   24   24   25   25   26   26   27   31   36   40   45   47   52   58   69   77 
LCS_GDT     L      26     L      26     23   26   32    14   23   23   23   23   23   23   25   26   26   27   31   36   40   45   46   51   58   69   77 
LCS_GDT     Y      27     Y      27     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   51   59   66   74   79 
LCS_GDT     E      28     E      28     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   51   55   58   64   72 
LCS_GDT     R      29     R      29     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   46   51   56   62   69 
LCS_GDT     C      30     C      30     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   50   59   66   74   79 
LCS_GDT     C      31     C      31     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   37   42   46   51   57   65   74   79 
LCS_GDT     S      32     S      32     23   25   32    22   23   23   23   23   23   23   25   26   26   27   30   36   40   45   49   54   57   64   71 
LCS_GDT     T      33     T      33     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   47   52   58   71   79 
LCS_GDT     A      34     A      34     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   41   47   54   60   66   74   79 
LCS_GDT     Y      35     Y      35     23   25   32    22   23   23   23   23   23   23   25   26   26   27   32   37   42   46   51   55   62   71   79 
LCS_GDT     Y      36     Y      36     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   36   40   45   51   55   58   70   79 
LCS_GDT     A      37     A      37     23   25   32    22   23   23   23   23   23   23   25   26   26   28   31   36   40   46   51   59   66   74   79 
LCS_GDT     M      38     M      38     23   25   32    22   23   23   23   23   23   23   25   26   26   27   32   39   42   47   55   60   66   74   79 
LCS_GDT     F      39     F      39     23   25   32    22   23   23   23   23   23   23   25   26   26   27   29   37   42   46   51   55   61   74   79 
LCS_GDT     H      40     H      40     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   37   42   46   51   59   66   74   79 
LCS_GDT     A      41     A      41     23   25   32    22   23   23   23   23   23   23   25   26   26   28   32   39   42   48   55   60   66   74   79 
LCS_GDT     A      42     A      42     23   25   32    22   23   23   23   23   23   23   25   26   26   27   29   36   42   46   51   59   66   74   79 
LCS_GDT     K      43     K      43     23   25   32    22   23   23   23   23   23   23   25   26   26   27   27   32   42   46   51   59   66   74   79 
LCS_GDT     A      44     A      44     23   25   32    22   23   23   23   23   23   23   25   26   26   28   32   37   42   47   55   60   66   74   79 
LCS_GDT     M      45     M      45     23   25   32    22   23   23   23   23   23   23   25   26   26   27   31   39   42   46   53   59   65   74   79 
LCS_GDT     L      46     L      46     23   25   32    22   23   23   23   23   23   23   25   26   26   27   27   28   37   41   46   51   63   74   79 
LCS_GDT     L      47     L      47     23   25   34    22   23   23   23   23   23   23   25   26   26   27   28   36   42   47   55   60   66   74   79 
LCS_GDT     G      48     G      48     23   25   39    22   23   23   23   23   23   23   25   26   26   27   31   39   42   47   53   60   66   74   79 
LCS_GDT     Y      49     Y      49      3   25   40     0    3    4    5    8   16   21   25   26   26   30   32   39   44   52   56   60   66   74   79 
LCS_GDT     G      50     G      50      4    6   54     3    4    4    5    7    9   13   17   24   32   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     R      51     R      51      4    6   57     3    4    4    5    7    9   12   17   24   32   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     D      52     D      52      4    6   57     3    4    4    6    7    9   12   17   22   32   42   52   54   58   60   61   63   66   74   79 
LCS_GDT     S      53     S      53      4    6   58     3    4    5    7    7   10   13   22   25   32   39   52   54   58   60   61   63   66   74   79 
LCS_GDT     K      54     K      54      3    6   58     3    3    5    7   17   23   29   33   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     T      55     T      55      3    5   58     3    3    7   13   20   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     H      56     H      56      3   12   58     3    3    9   13   20   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     R      57     R      57     11   13   58    10   11   11   11   13   14   17   20   34   39   43   47   48   54   56   61   63   66   74   79 
LCS_GDT     G      58     G      58     11   13   58    10   11   11   11   13   14   17   22   30   36   40   47   48   54   56   60   63   65   73   79 
LCS_GDT     T      59     T      59     11   13   58    10   11   11   11   13   14   17   22   30   38   42   47   50   58   60   61   63   66   74   79 
LCS_GDT     I      60     I      60     11   13   58    10   11   11   11   13   14   17   29   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     Y      61     Y      61     11   13   58    10   11   11   11   13   14   18   31   38   40   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     L      62     L      62     11   13   58    10   11   11   11   13   14   17   20   30   38   45   52   54   58   60   61   63   65   72   79 
LCS_GDT     I      63     I      63     11   13   58    10   11   11   11   13   14   17   20   36   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     W      64     W      64     11   13   58    10   11   11   11   13   14   17   22   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     E      65     E      65     11   13   58    10   11   11   11   13   14   17   23   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     C      66     C      66     11   13   58    10   11   11   11   13   13   15   19   23   26   45   52   54   58   60   61   63   65   71   78 
LCS_GDT     R      67     R      67     11   13   58     9   11   11   11   13   14   17   20   23   26   32   40   51   55   58   59   61   66   74   79 
LCS_GDT     E      68     E      68      4   13   58     4    4    4    8   13   14   17   18   23   24   29   32   40   44   54   55   60   66   74   79 
LCS_GDT     E      69     E      69      5   15   58     4    5    6   10   13   14   17   20   23   26   32   40   43   50   56   58   61   66   74   79 
LCS_GDT     L      70     L      70      8   26   58     3    7   11   16   24   26   29   34   37   39   44   48   51   55   57   59   61   66   74   79 
LCS_GDT     G      71     G      71      8   26   58     3    5    8   14   23   25   27   32   35   38   44   47   51   55   57   59   61   66   74   79 
LCS_GDT     L      72     L      72     18   26   58     3    8   14   22   24   27   31   34   40   42   45   52   53   55   58   61   63   66   74   79 
LCS_GDT     S      73     S      73     18   26   58     4   11   18   22   24   27   31   34   40   42   45   52   54   57   60   61   63   66   74   79 
LCS_GDT     D      74     D      74     18   26   58     8   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     D      75     D      75     18   26   58     8   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     D      76     D      76     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     C      77     C      77     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     S      78     S      78     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     K      79     K      79     18   26   58     8   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     L      80     L      80     18   26   58     9   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     S      81     S      81     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     R      82     R      82     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     A      83     A      83     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     F      84     F      84     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     D      85     D      85     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     L      86     L      86     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     R      87     R      87     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     E      88     E      88     18   26   58    11   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     E      89     E      89     18   26   58     9   16   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     S      90     S      90     18   26   58     3   10   16   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     D      91     D      91     18   26   58     3    4   16   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     Y      92     Y      92      4   26   58     3    5   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     G      93     G      93      3   26   58     3    3    4    5    9   17   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     I      94     I      94      3   26   58     3    4   15   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     Y      95     Y      95      3   26   58     2    6   19   22   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     K      96     K      96      5   24   58     3    4    5    7    7   12   22   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     E      97     E      97      5    6   58     3    4    5    7    9   16   29   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     V      98     V      98      5    6   58     3    4    5    7   17   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     S      99     S      99      5   25   58     3    4    5    7   17   26   30   33   38   42   44   48   54   58   60   61   63   66   74   79 
LCS_GDT     K     100     K     100     23   25   58    15   22   23   23   24   26   26   33   35   37   44   48   50   58   60   61   63   66   74   79 
LCS_GDT     D     101     D     101     23   25   58    15   22   23   23   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     L     102     L     102     23   25   58    15   22   23   23   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     A     103     A     103     23   25   58    15   22   23   23   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     I     104     I     104     23   25   58    15   22   23   23   24   26   30   33   38   42   45   52   54   58   60   61   63   65   71   77 
LCS_GDT     K     105     K     105     23   25   58    15   22   23   23   24   26   30   34   40   42   45   52   54   58   60   61   63   65   72   77 
LCS_GDT     I     106     I     106     23   25   58    15   22   23   23   24   27   31   34   40   42   45   52   54   58   60   61   63   66   74   79 
LCS_GDT     L     107     L     107     23   25   58    15   22   23   23   24   26   30   34   40   42   45   52   54   58   60   61   63   65   72   78 
LCS_GDT     K     108     K     108     23   25   58    15   22   23   23   24   26   30   33   38   40   45   52   54   58   60   61   63   65   68   73 
LCS_GDT     D     109     D     109     23   25   58    15   22   23   23   24   26   30   33   38   42   45   52   54   58   60   61   63   65   70   73 
LCS_GDT     A     110     A     110     23   25   58    15   22   23   23   24   26   30   34   40   42   45   52   54   58   60   61   63   65   72   78 
LCS_GDT     E     111     E     111     23   25   53    15   22   23   23   24   26   30   33   38   40   44   50   54   58   60   61   63   65   68   73 
LCS_GDT     I     112     I     112     23   25   51    15   22   23   23   24   26   30   33   38   40   43   47   48   58   60   61   63   65   67   70 
LCS_GDT     F     113     F     113     23   25   51    15   22   23   23   24   26   30   33   38   40   43   49   54   58   60   61   63   65   67   73 
LCS_GDT     V     114     V     114     23   25   48    14   22   23   23   24   26   30   33   38   40   45   52   54   58   60   61   63   65   68   73 
LCS_GDT     Q     115     Q     115     23   25   48    14   22   23   23   24   26   30   33   38   40   43   47   48   53   60   61   63   65   67   69 
LCS_GDT     K     116     K     116     23   25   48    15   22   23   23   24   26   30   33   38   40   43   47   48   52   56   60   63   65   67   69 
LCS_GDT     A     117     A     117     23   25   48    14   22   23   23   24   26   30   33   38   40   43   47   52   58   60   61   63   65   67   69 
LCS_GDT     K     118     K     118     23   25   48    14   22   23   23   24   26   30   33   38   40   43   47   48   58   60   61   63   65   67   69 
LCS_GDT     N     119     N     119     23   25   48    14   22   23   23   24   26   30   33   36   39   43   47   48   52   55   60   62   65   67   69 
LCS_GDT     A     120     A     120     23   25   48    14   22   23   23   24   26   30   33   38   40   43   47   48   52   55   60   62   65   67   69 
LCS_GDT     V     121     V     121     23   25   48    12   22   23   23   24   26   30   33   38   40   43   47   48   53   56   60   63   65   67   69 
LCS_GDT     N     122     N     122     23   25   48    12   21   23   23   24   26   30   33   38   40   43   47   48   52   55   60   62   65   67   69 
LCS_GDT     K     123     K     123      3   25   48     0    3    3    3    4    5   21   31   38   40   43   47   48   52   55   60   62   65   67   69 
LCS_AVERAGE  LCS_A:  23.62  (  14.59   18.55   37.74 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     23     24     24     27     31     34     40     42     45     52     54     58     60     61     63     66     74     79 
GDT PERCENT_CA  17.89  18.70  18.70  19.51  19.51  21.95  25.20  27.64  32.52  34.15  36.59  42.28  43.90  47.15  48.78  49.59  51.22  53.66  60.16  64.23
GDT RMS_LOCAL    0.29   0.34   0.34   0.70   0.70   1.89   2.36   2.73   3.41   3.55   3.90   4.44   4.59   4.91   5.03   5.09   5.24   6.42   7.01   7.29
GDT RMS_ALL_CA  26.59  26.59  26.59  36.26  36.26  18.83  18.31  18.34  18.20  18.20  18.25  18.64  18.78  18.95  18.97  18.91  18.82  18.88  18.72  18.76

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         60.442
LGA    D       2      D       2         59.207
LGA    E       3      E       3         56.268
LGA    L       4      L       4         53.050
LGA    E       5      E       5         49.881
LGA    L       6      L       6         47.345
LGA    R       7      R       7         44.825
LGA    I       8      I       8         40.926
LGA    R       9      R       9         38.289
LGA    K      10      K      10         36.661
LGA    A      11      A      11         33.099
LGA    E      12      E      12         29.531
LGA    K      13      K      13         27.525
LGA    L      14      L      14         26.364
LGA    V      15      V      15         21.693
LGA    Q      16      Q      16         18.789
LGA    D      17      D      17         19.258
LGA    A      18      A      18         17.369
LGA    K      19      K      19         12.572
LGA    K      20      K      20         12.338
LGA    E      21      E      21         15.859
LGA    F      22      F      22         12.888
LGA    E      23      E      23         11.842
LGA    M      24      M      24         16.036
LGA    G      25      G      25         18.897
LGA    L      26      L      26         16.922
LGA    Y      27      Y      27         13.928
LGA    E      28      E      28         18.490
LGA    R      29      R      29         18.161
LGA    C      30      C      30         12.752
LGA    C      31      C      31         13.621
LGA    S      32      S      32         16.760
LGA    T      33      T      33         14.114
LGA    A      34      A      34         10.821
LGA    Y      35      Y      35         13.269
LGA    Y      36      Y      36         13.809
LGA    A      37      A      37         11.153
LGA    M      38      M      38         10.719
LGA    F      39      F      39         12.480
LGA    H      40      H      40         11.289
LGA    A      41      A      41         10.706
LGA    A      42      A      42         11.715
LGA    K      43      K      43         10.924
LGA    A      44      A      44         10.916
LGA    M      45      M      45         12.438
LGA    L      46      L      46         11.785
LGA    L      47      L      47         10.332
LGA    G      48      G      48         12.875
LGA    Y      49      Y      49         12.158
LGA    G      50      G      50          9.222
LGA    R      51      R      51          8.860
LGA    D      52      D      52          9.109
LGA    S      53      S      53          9.106
LGA    K      54      K      54          5.677
LGA    T      55      T      55          2.419
LGA    H      56      H      56          3.309
LGA    R      57      R      57          9.396
LGA    G      58      G      58         10.430
LGA    T      59      T      59          8.269
LGA    I      60      I      60          6.138
LGA    Y      61      Y      61          7.852
LGA    L      62      L      62          7.703
LGA    I      63      I      63          5.848
LGA    W      64      W      64          5.909
LGA    E      65      E      65          6.236
LGA    C      66      C      66          6.241
LGA    R      67      R      67          6.532
LGA    E      68      E      68          9.352
LGA    E      69      E      69          7.195
LGA    L      70      L      70          3.945
LGA    G      71      G      71          4.525
LGA    L      72      L      72          1.575
LGA    S      73      S      73          2.623
LGA    D      74      D      74          3.655
LGA    D      75      D      75          3.898
LGA    D      76      D      76          2.818
LGA    C      77      C      77          2.873
LGA    S      78      S      78          3.431
LGA    K      79      K      79          2.856
LGA    L      80      L      80          3.139
LGA    S      81      S      81          3.277
LGA    R      82      R      82          3.165
LGA    A      83      A      83          2.827
LGA    F      84      F      84          3.086
LGA    D      85      D      85          3.044
LGA    L      86      L      86          2.927
LGA    R      87      R      87          3.024
LGA    E      88      E      88          3.286
LGA    E      89      E      89          2.985
LGA    S      90      S      90          3.738
LGA    D      91      D      91          3.682
LGA    Y      92      Y      92          1.727
LGA    G      93      G      93          3.483
LGA    I      94      I      94          1.111
LGA    Y      95      Y      95          1.274
LGA    K      96      K      96          3.936
LGA    E      97      E      97          3.859
LGA    V      98      V      98          2.809
LGA    S      99      S      99          6.613
LGA    K     100      K     100          6.682
LGA    D     101      D     101          3.234
LGA    L     102      L     102          1.695
LGA    A     103      A     103          3.340
LGA    I     104      I     104          6.379
LGA    K     105      K     105          6.118
LGA    I     106      I     106          2.827
LGA    L     107      L     107          5.942
LGA    K     108      K     108         10.001
LGA    D     109      D     109          8.909
LGA    A     110      A     110          6.124
LGA    E     111      E     111         11.387
LGA    I     112      I     112         14.118
LGA    F     113      F     113         11.567
LGA    V     114      V     114         11.024
LGA    Q     115      Q     115         16.277
LGA    K     116      K     116         17.332
LGA    A     117      A     117         14.251
LGA    K     118      K     118         16.693
LGA    N     119      N     119         21.324
LGA    A     120      A     120         20.214
LGA    V     121      V     121         18.236
LGA    N     122      N     122         22.073
LGA    K     123      K     123         20.764

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     34    2.73    28.862    26.331     1.199

LGA_LOCAL      RMSD =  2.735  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.161  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 16.319  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.721089 * X  +  -0.658869 * Y  +  -0.214297 * Z  +  36.137955
  Y_new =   0.488439 * X  +   0.264058 * Y  +   0.831685 * Z  +  32.089497
  Z_new =  -0.491385 * X  +  -0.704390 * Y  +   0.512226 * Z  +  28.014620 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.942053    2.199539  [ DEG:   -53.9757    126.0243 ]
  Theta =   0.513679    2.627914  [ DEG:    29.4316    150.5684 ]
  Phi   =   0.595371   -2.546221  [ DEG:    34.1123   -145.8877 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_5-D1                               
REMARK     2: T0367_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_5-D1.T0367_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   34   2.73  26.331    16.32
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_5-D1
PFRMAT TS
TARGET T0367
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      -3.795  21.769  17.809  1.00 25.00           C
ATOM      2  CA  ASP     2      -1.406  24.721  17.371  1.00 25.00           C
ATOM      3  CA  GLU     3       0.917  24.004  14.410  1.00 25.00           C
ATOM      4  CA  LEU     4       2.157  27.627  14.474  1.00 25.00           C
ATOM      5  CA  GLU     5       2.815  27.362  18.237  1.00 25.00           C
ATOM      6  CA  LEU     6       4.759  24.107  17.692  1.00 25.00           C
ATOM      7  CA  ARG     7       6.837  25.778  14.944  1.00 25.00           C
ATOM      8  CA  ILE     8       7.584  28.728  17.269  1.00 25.00           C
ATOM      9  CA  ARG     9       8.657  26.308  20.035  1.00 25.00           C
ATOM     10  CA  LYS    10      10.949  24.474  17.574  1.00 25.00           C
ATOM     11  CA  ALA    11      12.491  27.806  16.489  1.00 25.00           C
ATOM     12  CA  GLU    12      13.076  28.758  20.151  1.00 25.00           C
ATOM     13  CA  LYS    13      14.743  25.370  20.791  1.00 25.00           C
ATOM     14  CA  LEU    14      16.991  25.871  17.731  1.00 25.00           C
ATOM     15  CA  VAL    15      17.955  29.361  18.980  1.00 25.00           C
ATOM     16  CA  GLN    16      18.784  27.923  22.431  1.00 25.00           C
ATOM     17  CA  ASP    17      20.944  25.208  20.809  1.00 25.00           C
ATOM     18  CA  ALA    18      22.776  27.863  18.746  1.00 25.00           C
ATOM     19  CA  LYS    19      23.391  29.931  21.911  1.00 25.00           C
ATOM     20  CA  LYS    20      24.757  26.834  23.700  1.00 25.00           C
ATOM     21  CA  GLU    21      27.079  26.117  20.740  1.00 25.00           C
ATOM     22  CA  PHE    22      28.319  29.740  20.804  1.00 25.00           C
ATOM     23  CA  GLU    23      28.978  29.474  24.567  1.00 25.00           C
ATOM     24  CA  MET    24      30.920  26.218  24.022  1.00 25.00           C
ATOM     25  CA  GLY    25      32.999  27.890  21.273  1.00 25.00           C
ATOM     26  CA  LEU    26      33.746  30.840  23.599  1.00 25.00           C
ATOM     27  CA  TYR    27      34.820  28.419  26.365  1.00 25.00           C
ATOM     28  CA  GLU    28      37.112  26.585  23.905  1.00 25.00           C
ATOM     29  CA  ARG    29      38.653  29.919  22.818  1.00 25.00           C
ATOM     30  CA  CYS    30      39.238  30.870  26.482  1.00 25.00           C
ATOM     31  CA  CYS    31      40.905  27.482  27.121  1.00 25.00           C
ATOM     32  CA  SER    32      43.153  27.982  24.061  1.00 25.00           C
ATOM     33  CA  THR    33      44.117  31.472  25.310  1.00 25.00           C
ATOM     34  CA  ALA    34      44.946  30.035  28.761  1.00 25.00           C
ATOM     35  CA  TYR    35      47.105  27.320  27.140  1.00 25.00           C
ATOM     36  CA  TYR    36      48.939  29.976  25.077  1.00 25.00           C
ATOM     37  CA  ALA    37      49.554  32.044  28.241  1.00 25.00           C
ATOM     38  CA  MET    38      50.920  28.946  30.030  1.00 25.00           C
ATOM     39  CA  PHE    39      53.242  28.229  27.070  1.00 25.00           C
ATOM     40  CA  HIS    40      54.481  31.852  27.134  1.00 25.00           C
ATOM     41  CA  ALA    41      55.141  31.585  30.897  1.00 25.00           C
ATOM     42  CA  ALA    42      57.083  28.330  30.352  1.00 25.00           C
ATOM     43  CA  LYS    43      59.162  30.003  27.603  1.00 25.00           C
ATOM     44  CA  ALA    44      59.908  32.952  29.929  1.00 25.00           C
ATOM     45  CA  MET    45      60.983  30.531  32.695  1.00 25.00           C
ATOM     46  CA  LEU    46      63.274  28.698  30.234  1.00 25.00           C
ATOM     47  CA  LEU    47      64.816  32.031  29.148  1.00 25.00           C
ATOM     48  CA  GLY    48      65.401  32.982  32.812  1.00 25.00           C
ATOM     49  CA  TYR    49      62.524  35.180  34.116  1.00 25.00           C
ATOM     50  CA  GLY    50      59.346  36.969  35.091  1.00 25.00           C
ATOM     51  CA  ARG    51      56.227  39.089  35.913  1.00 25.00           C
ATOM     52  CA  ASP    52      55.727  41.646  38.729  1.00 25.00           C
ATOM     53  CA  SER    53      53.098  41.285  41.375  1.00 25.00           C
ATOM     54  CA  LYS    54      49.273  41.583  41.091  1.00 25.00           C
ATOM     55  CA  THR    55      48.603  41.428  37.351  1.00 25.00           C
ATOM     56  CA  HIS    56      45.946  39.277  35.681  1.00 25.00           C
ATOM     57  CA  ARG    57      43.290  36.709  36.303  1.00 25.00           C
ATOM     58  CA  GLY    58      45.501  34.183  34.460  1.00 25.00           C
ATOM     59  CA  THR    59      42.750  33.642  31.850  1.00 25.00           C
ATOM     60  CA  ILE    60      42.421  37.428  31.377  1.00 25.00           C
ATOM     61  CA  TYR    61      46.213  37.726  30.927  1.00 25.00           C
ATOM     62  CA  LEU    62      46.151  34.908  28.334  1.00 25.00           C
ATOM     63  CA  ILE    63      43.308  36.662  26.460  1.00 25.00           C
ATOM     64  CA  TRP    64      45.284  39.942  26.481  1.00 25.00           C
ATOM     65  CA  GLU    65      48.368  38.121  25.124  1.00 25.00           C
ATOM     66  CA  CYS    66      46.248  36.545  22.352  1.00 25.00           C
ATOM     67  CA  ARG    67      44.827  39.985  21.449  1.00 25.00           C
ATOM     68  CA  GLU    68      48.367  41.439  21.311  1.00 25.00           C
ATOM     69  CA  GLU    69      49.485  38.565  19.039  1.00 25.00           C
ATOM     70  CA  LEU    70      51.185  35.192  18.799  1.00 25.00           C
ATOM     71  CA  GLY    71      49.757  34.572  15.299  1.00 25.00           C
ATOM     72  CA  LEU    72      46.691  33.341  17.220  1.00 25.00           C
ATOM     73  CA  SER    73      44.386  32.810  14.169  1.00 25.00           C
ATOM     74  CA  ASP    74      41.762  35.509  13.566  1.00 25.00           C
ATOM     75  CA  ASP    75      38.624  33.749  14.881  1.00 25.00           C
ATOM     76  CA  ASP    76      40.618  32.344  17.832  1.00 25.00           C
ATOM     77  CA  CYS    77      41.983  35.837  18.604  1.00 25.00           C
ATOM     78  CA  SER    78      38.436  37.275  18.495  1.00 25.00           C
ATOM     79  CA  LYS    79      37.224  34.528  20.872  1.00 25.00           C
ATOM     80  CA  LEU    80      40.114  35.290  23.267  1.00 25.00           C
ATOM     81  CA  SER    81      39.243  39.019  23.169  1.00 25.00           C
ATOM     82  CA  ARG    82      35.576  38.209  23.920  1.00 25.00           C
ATOM     83  CA  ALA    83      36.641  36.007  26.868  1.00 25.00           C
ATOM     84  CA  PHE    84      38.859  38.828  28.205  1.00 25.00           C
ATOM     85  CA  ASP    85      35.945  41.295  27.904  1.00 25.00           C
ATOM     86  CA  LEU    86      33.660  38.864  29.783  1.00 25.00           C
ATOM     87  CA  ARG    87      36.288  38.487  32.543  1.00 25.00           C
ATOM     88  CA  GLU    88      36.582  42.296  32.816  1.00 25.00           C
ATOM     89  CA  GLU    89      32.772  42.596  33.073  1.00 25.00           C
ATOM     90  CA  SER    90      33.325  40.957  36.463  1.00 25.00           C
ATOM     91  CA  ASP    91      35.097  42.645  39.348  1.00 25.00           C
ATOM     92  CA  TYR    92      32.763  45.571  38.589  1.00 25.00           C
ATOM     93  CA  GLY    93      30.312  46.230  41.403  1.00 25.00           C
ATOM     94  CA  ILE    94      26.566  46.079  40.674  1.00 25.00           C
ATOM     95  CA  TYR    95      24.199  47.097  37.810  1.00 25.00           C
ATOM     96  CA  LYS    96      20.689  47.790  36.417  1.00 25.00           C
ATOM     97  CA  GLU    97      20.841  45.327  33.509  1.00 25.00           C
ATOM     98  CA  VAL    98      22.439  41.891  32.867  1.00 25.00           C
ATOM     99  CA  SER    99      25.178  43.091  30.515  1.00 25.00           C
ATOM    100  CA  LYS   100      24.293  39.931  28.574  1.00 25.00           C
ATOM    101  CA  ASP   101      22.926  36.354  28.528  1.00 25.00           C
ATOM    102  CA  LEU   102      25.793  35.262  26.237  1.00 25.00           C
ATOM    103  CA  ALA   103      28.331  36.894  28.594  1.00 25.00           C
ATOM    104  CA  ILE   104      26.750  35.095  31.582  1.00 25.00           C
ATOM    105  CA  LYS   105      26.929  31.764  29.702  1.00 25.00           C
ATOM    106  CA  ILE   106      30.616  32.395  28.882  1.00 25.00           C
ATOM    107  CA  LEU   107      31.325  33.184  32.562  1.00 25.00           C
ATOM    108  CA  LYS   108      29.558  29.953  33.619  1.00 25.00           C
ATOM    109  CA  ASP   109      31.630  27.963  31.087  1.00 25.00           C
ATOM    110  CA  ALA   110      34.844  29.559  32.425  1.00 25.00           C
ATOM    111  CA  GLU   111      33.824  28.671  36.007  1.00 25.00           C
ATOM    112  CA  ILE   112      33.132  25.058  34.941  1.00 25.00           C
ATOM    113  CA  PHE   113      36.560  24.877  33.244  1.00 25.00           C
ATOM    114  CA  VAL   114      38.229  26.228  36.415  1.00 25.00           C
ATOM    115  CA  GLN   115      36.389  23.616  38.526  1.00 25.00           C
ATOM    116  CA  LYS   116      37.527  20.847  36.137  1.00 25.00           C
ATOM    117  CA  ALA   117      41.140  22.097  36.371  1.00 25.00           C
ATOM    118  CA  LYS   118      40.914  22.107  40.194  1.00 25.00           C
ATOM    119  CA  ASN   119      39.547  18.530  40.148  1.00 25.00           C
ATOM    120  CA  ALA   120      42.415  17.438  37.856  1.00 25.00           C
ATOM    121  CA  VAL   121      44.953  19.070  40.213  1.00 25.00           C
ATOM    122  CA  ASN   122      43.372  17.270  43.202  1.00 25.00           C
ATOM    123  CA  LYS   123      42.705  13.799  44.526  1.00 25.00           C
TER
END
