
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0370TS168_3
# Molecule2: number of CA atoms  154 ( 1177),  selected  154 , name T0370.pdb
# PARAMETERS: T0370TS168_3.T0370.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         6 - 27          4.81    23.06
  LONGEST_CONTINUOUS_SEGMENT:    22         7 - 28          4.94    22.21
  LONGEST_CONTINUOUS_SEGMENT:    22         8 - 29          4.93    21.78
  LCS_AVERAGE:     11.84

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         7 - 21          1.84    17.42
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          1.69    17.64
  LCS_AVERAGE:      5.14

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         8 - 21          0.35    17.07
  LCS_AVERAGE:      3.28

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     M       1     M       1      6    8   20     3    5    6    8   10   10   13   16   19   21   25   28   32   37   42   46   50   54   63   67 
LCS_GDT     T       2     T       2      6    8   20     3    5    7    8   10   10   13   16   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     T       3     T       3      6    8   20     3    5    7    8   10   10   13   16   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     P       4     P       4      6    8   20     4    5    7    8   10   10   13   16   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     P       5     P       5      6    8   20     4    5    6    8   10   10   13   16   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     A       6     A       6      6    8   22     4    5    6    8   10   10   13   14   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     R       7     R       7      6   15   22     4    4    7    8   10   10   13   16   19   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     T       8     T       8     14   15   22     8   14   14   16   16   16   18   20   23   26   29   30   31   36   42   46   51   54   63   67 
LCS_GDT     A       9     A       9     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   32   37   42   51   54   62   67 
LCS_GDT     K      10     K      10     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   34   41   45   51   54   63   67 
LCS_GDT     Q      11     Q      11     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   37   42   46   51   54   63   67 
LCS_GDT     R      12     R      12     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   37   42   46   51   54   63   67 
LCS_GDT     I      13     I      13     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   37   42   46   51   54   63   67 
LCS_GDT     Q      14     Q      14     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   34   41   45   51   54   63   67 
LCS_GDT     D      15     D      15     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   34   41   45   51   54   63   67 
LCS_GDT     T      16     T      16     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   35   42   46   51   54   63   67 
LCS_GDT     L      17     L      17     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   32   34   41   45   51   54   63   67 
LCS_GDT     N      18     N      18     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   33   41   45   51   54   57   66 
LCS_GDT     R      19     R      19     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   33   41   45   51   54   57   66 
LCS_GDT     L      20     L      20     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   34   41   45   51   54   61   67 
LCS_GDT     E      21     E      21     14   15   22    13   15   15   16   16   16   18   20   23   26   29   30   31   33   41   45   51   54   57   62 
LCS_GDT     L      22     L      22      3   15   22     3    3    5    5    7   12   17   20   23   26   29   30   31   33   36   41   43   48   51   56 
LCS_GDT     D      23     D      23      3    5   22     3    3    4    5    7    9   11   13   15   18   23   26   30   33   34   37   43   45   49   51 
LCS_GDT     V      24     V      24      3    5   22     3    4    6    7    9    9   11   13   15   18   20   22   27   28   32   37   40   45   49   51 
LCS_GDT     D      25     D      25      3    5   22     3    3    5    8    8    9   13   14   15   18   20   23   27   29   34   38   42   48   51   59 
LCS_GDT     A      26     A      26      3    4   22     3    4    4    9   10   12   13   14   17   19   20   26   27   32   37   44   49   53   63   66 
LCS_GDT     W      27     W      27      3    3   22     3    3    7    9   10   12   13   14   17   19   20   24   27   31   36   42   45   49   57   61 
LCS_GDT     V      28     V      28      3    3   22     3    5    5    9   10   12   13   14   17   19   21   26   27   32   37   44   49   54   63   66 
LCS_GDT     S      29     S      29      3    4   22     1    3    4    5    7    8   12   14   17   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     T      30     T      30      3    4   15     3    4    4    6    7    7   12   14   16   18   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     A      31     A      31      4    5   15     3    4    4    5    6    8   12   14   16   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     G      32     G      32      4    5   15     3    4    4    5    5    8   12   14   16   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     A      33     A      33      4    5   15     3    3    5    5    6    8   10   12   14   17   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     D      34     D      34      4    8   15     3    4    5    7    8   10   12   13   15   16   20   25   29   32   41   45   50   54   63   67 
LCS_GDT     G      35     G      35      4    8   15     3    4    5    7    8   10   12   13   15   16   20   22   25   29   35   41   47   54   62   67 
LCS_GDT     G      36     G      36      4    8   15     3    5    5    7    8   10   12   13   15   16   20   22   25   27   30   38   44   54   62   67 
LCS_GDT     A      37     A      37      4    8   15     3    5    5    5    7   10   12   13   15   16   20   20   25   27   31   37   43   54   62   67 
LCS_GDT     P      38     P      38      4    8   15     3    3    5    6    8   10   12   13   15   16   20   22   25   27   31   36   43   54   62   67 
LCS_GDT     Y      39     Y      39      4    8   15     3    5    5    7    8   10   12   13   15   16   20   22   25   27   31   34   43   54   62   67 
LCS_GDT     L      40     L      40      4    8   15     0    5    5    5    7   10   12   13   14   16   20   22   25   27   30   34   41   46   58   67 
LCS_GDT     V      41     V      41      3    8   15     3    5    5    7    8   10   12   13   15   16   20   22   25   27   30   37   43   54   62   67 
LCS_GDT     P      42     P      42      3    5   15     3    3    4    5    6    7    9   11   13   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     L      43     L      43      3    6   17     3    4    5    6    6    8    9   11   12   16   18   28   32   37   42   46   50   54   63   67 
LCS_GDT     S      44     S      44      4    6   17     3    4    4    5    6    7    9   11   12   14   20   24   26   29   35   37   50   54   63   67 
LCS_GDT     Y      45     Y      45      4    6   17     3    4    4    5    6    6    9    9   12   14   20   24   28   32   41   46   50   54   63   67 
LCS_GDT     L      46     L      46      4    6   17     3    3    4    5    6    7   11   14   17   19   21   26   29   32   37   46   50   54   63   67 
LCS_GDT     W      47     W      47      4    6   17     3    5    5    7    7    9   12   12   19   19   22   26   29   32   37   41   44   49   57   63 
LCS_GDT     D      48     D      48      4    6   17     3    5    5    5    6    6   12   13   19   19   22   26   29   32   35   41   44   49   55   60 
LCS_GDT     G      49     G      49      4    7   17     3    5    5    5    6    9   12   14   19   19   22   26   29   32   37   41   44   49   55   63 
LCS_GDT     E      50     E      50      5    9   17     3    5    6    8    8    9   12   14   19   19   22   26   29   32   37   41   44   49   57   63 
LCS_GDT     T      51     T      51      5    9   17     3    5    6    8    9    9   12   14   19   19   22   26   29   32   37   41   44   49   60   67 
LCS_GDT     F      52     F      52      5    9   17     3    5    6    8    9    9   12   14   17   19   22   28   32   37   42   46   51   54   63   67 
LCS_GDT     L      53     L      53      5    9   17     3    4    5    6    9    9   11   13   16   18   23   28   32   37   42   46   51   54   63   67 
LCS_GDT     V      54     V      54      5    9   17     3    5    6    8    9    9   12   16   18   21   25   28   32   37   42   46   50   54   63   67 
LCS_GDT     A      55     A      55      5    9   17     3    5    6    7    9    9   11   13   17   19   21   26   31   31   36   43   47   54   63   67 
LCS_GDT     T      56     T      56      5    9   17     3    5    6    8    9    9   11   13   17   20   25   28   32   37   42   46   50   54   63   67 
LCS_GDT     P      57     P      57      5    9   17     3    4    5    6    9    9   12   16   18   21   25   28   32   37   42   46   50   54   63   67 
LCS_GDT     A      58     A      58      4    9   18     3    5    7    7    9   10   12   16   18   25   25   29   32   37   42   46   51   54   63   67 
LCS_GDT     A      59     A      59      4    5   18     3    5    7    7    9   10   12   16   18   21   25   30   32   37   42   46   51   54   63   67 
LCS_GDT     S      60     S      60      3    5   18     3    3    4    6    8    9   12   15   17   26   29   30   32   35   40   45   50   54   63   67 
LCS_GDT     P      61     P      61      4    5   18     3    4    4    6   10   11   13   14   15   17   20   24   29   33   36   41   46   51   57   65 
LCS_GDT     T      62     T      62      4    5   18     3    4    4    4    5    7    9   11   12   15   15   16   19   21   24   31   34   39   43   49 
LCS_GDT     G      63     G      63      4    9   18     3    4    4    6   10   11   13   14   15   17   17   20   28   32   36   41   43   47   49   53 
LCS_GDT     R      64     R      64      4    9   18     3    4    4    6   10   11   13   15   17   26   29   30   31   33   41   45   51   54   57   62 
LCS_GDT     N      65     N      65      4    9   18     3    4    4    6   10   11   17   20   23   26   29   30   31   33   41   45   51   54   57   62 
LCS_GDT     L      66     L      66      4    9   20     4    4    6    7   10   11   13   19   23   26   29   30   31   33   41   45   51   54   57   62 
LCS_GDT     S      67     S      67      4    9   20     4    4    6    7   10   11   13   15   17   20   25   28   31   33   37   41   47   52   57   61 
LCS_GDT     E      68     E      68      4    9   20     4    4    6    7   10   11   13   17   17   21   25   28   31   33   37   41   47   52   57   62 
LCS_GDT     T      69     T      69      4    9   20     4    4    6    7   10   16   16   20   23   26   29   30   31   33   37   42   48   52   57   62 
LCS_GDT     G      70     G      70      5    9   20     3    5    5    7   10   16   16   20   23   26   29   30   31   33   37   42   48   53   57   62 
LCS_GDT     R      71     R      71      5    9   20    10   15   15   16   16   16   18   20   23   26   29   30   31   33   41   45   51   54   57   62 
LCS_GDT     V      72     V      72      5    8   20    10   15   15   16   16   16   18   20   23   26   29   30   31   33   41   45   51   54   62   67 
LCS_GDT     R      73     R      73      5    8   20     3    5    5    7    9   11   13   19   20   22   29   30   31   33   36   41   51   54   62   67 
LCS_GDT     L      74     L      74      5    7   20     3    5    5    7    8   10   18   20   23   26   29   30   31   33   36   41   43   50   58   64 
LCS_GDT     G      75     G      75      4    6   20     3    3    5    6    6   13   18   20   23   26   29   30   31   33   36   41   43   47   54   62 
LCS_GDT     I      76     I      76      4    6   20     3    3    5    6    6    8    9   11   13   18   22   27   29   33   36   41   48   52   57   62 
LCS_GDT     G      77     G      77      4    6   20     3    4    5    6    6    8    9   11   13   17   21   23   25   29   35   40   51   54   57   62 
LCS_GDT     P      78     P      78      4    6   20     3    4    5    6    6    7    9   11   13   15   21   23   25   28   32   38   43   47   53   60 
LCS_GDT     T      79     T      79      4    6   20     3    4    5    6    6    8   11   13   17   20   22   27   29   33   36   41   43   47   49   56 
LCS_GDT     R      80     R      80      4    7   20     3    4    5    6    6    7   11   13   16   18   22   27   29   33   36   41   43   47   49   51 
LCS_GDT     D      81     D      81      4    7   20     3    4    5    6    7    9   11   13   16   18   21   27   29   33   36   41   43   47   49   54 
LCS_GDT     L      82     L      82      4    7   20     3    3    4    6    7   12   17   20   23   26   29   30   31   33   36   41   43   47   49   56 
LCS_GDT     V      83     V      83      4    7   20     3    3    5    6    7    9   11   15   19   26   29   30   31   33   36   41   43   47   53   57 
LCS_GDT     L      84     L      84      4    7   20     3    4    5    7    8   10   12   14   16   18   20   24   30   31   34   35   39   46   48   55 
LCS_GDT     V      85     V      85      4    7   20     3    4    5    7    9   11   13   14   16   18   19   25   26   29   32   36   41   47   53   63 
LCS_GDT     E      86     E      86      4    7   18     3    4    4    6    7    9   11   13   16   16   20   24   26   29   32   35   38   43   47   55 
LCS_GDT     G      87     G      87      3    6   18     2    3    4    5    6    6   10   11   13   16   20   24   26   29   33   36   38   45   52   62 
LCS_GDT     T      88     T      88      3    6   18     0    3    4    5    7    7   11   13   17   19   21   26   29   32   40   45   50   54   63   67 
LCS_GDT     A      89     A      89      4    6   18     3    4    4    6    8   10   12   14   16   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     L      90     L      90      4    6   18     3    4    4    6    8   10   12   14   16   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     P      91     P      91      5    6   18     3    4    5    7   10   12   13   14   16   19   22   24   26   32   37   42   50   54   63   67 
LCS_GDT     L      92     L      92      5    6   18     3    4    5    7    8   12   13   14   16   19   22   24   26   32   37   46   50   54   63   67 
LCS_GDT     E      93     E      93      5    6   18     3    4    5    8    9   11   13   14   16   19   20   22   25   27   33   40   42   46   52   58 
LCS_GDT     P      94     P      94      5    6   18     3    4    5    7    8    9   12   14   16   19   20   22   25   27   31   36   40   46   52   57 
LCS_GDT     A      95     A      95      5    7   18     3    4    6    9   10   12   13   14   16   19   22   24   26   32   37   42   47   54   63   67 
LCS_GDT     G      96     G      96      6    7   18     3    4    7    7    8   12   13   14   16   19   22   24   26   32   37   42   47   54   63   67 
LCS_GDT     L      97     L      97      6    7   18     4    5    7    9   10   12   13   14   16   19   22   24   26   32   42   46   50   54   63   67 
LCS_GDT     P      98     P      98      6    7   18     4    5    7    9   10   12   13   14   16   19   22   24   26   32   37   46   50   54   63   67 
LCS_GDT     D      99     D      99      6    7   18     4    5    7    9   10   12   13   14   16   19   22   24   27   37   42   46   50   54   63   67 
LCS_GDT     G     100     G     100      6    7   18     4    5    7    9   10   12   13   14   16   19   22   28   32   37   42   46   50   54   63   67 
LCS_GDT     V     101     V     101      6    7   18     4    5    7    9   10   12   13   14   16   19   20   27   31   37   42   46   50   54   63   67 
LCS_GDT     G     102     G     102      4    6   18     3    4    4    5    6    8    9    9   12   14   15   18   21   23   30   31   39   43   49   53 
LCS_GDT     D     103     D     103      4    6   18     3    4    4    5    6    7    9   12   13   14   16   19   22   28   32   35   37   44   54   62 
LCS_GDT     T     104     T     104      4    6   18     1    3    4    5    7    8   12   16   18   21   25   28   32   34   41   45   51   54   63   67 
LCS_GDT     F     105     F     105      3    5   18     0    3    3    5    8   11   13   16   18   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     A     106     A     106      3    4   18     0    3    3    4    6    8   12   16   18   21   25   28   32   34   41   45   51   54   60   67 
LCS_GDT     E     107     E     107      3    5   17     3    3    4    5    6    8    9   11   17   20   22   28   31   33   41   45   51   54   57   62 
LCS_GDT     K     108     K     108      3    7   14     3    3    3    5    7    7    9    9   17   20   22   26   27   31   37   40   48   52   57   62 
LCS_GDT     T     109     T     109      3    7   14     3    3    4    6    7    7    9   14   15   17   21   26   27   30   35   40   48   52   57   62 
LCS_GDT     G     110     G     110      3    7   14     0    3    3    6    7    7    9   14   15   20   22   26   27   30   37   40   48   52   57   62 
LCS_GDT     F     111     F     111      3    7   18     2    3    4    6    8   10   12   13   17   20   22   28   31   33   41   45   51   54   58   63 
LCS_GDT     D     112     D     112      3    7   19     2    3    4    6    7    7    9   13   17   20   22   26   31   34   41   45   51   54   63   67 
LCS_GDT     P     113     P     113      4    7   19     3    4    6    7    8    9   12   13   17   20   22   28   32   37   42   46   51   54   63   67 
LCS_GDT     R     114     R     114      4    7   19     3    4    4    6    7    9   13   13   15   16   20   28   32   37   42   46   50   54   63   67 
LCS_GDT     R     115     R     115      4    7   19     3    4    5    5    7    9   10   11   13   18   23   28   32   37   42   46   50   54   63   67 
LCS_GDT     L     116     L     116      4    7   19     3    5    7    7    9   10   12   16   18   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     T     117     T     117      4    7   19     3    3    5    5    7    9   12   16   18   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     T     118     T     118      4    7   19     3    3    5    5    8    9   12   13   15   17   21   26   32   37   42   46   51   54   63   67 
LCS_GDT     S     119     S     119      4    9   19     3    3    5    7    8    9   12   13   15   17   21   28   32   37   42   46   50   54   63   67 
LCS_GDT     Y     120     Y     120      4    9   19     3    4    5    7    9    9   12   16   18   21   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     L     121     L     121      3    9   19     3    4    5    7    9    9   12   14   17   19   25   28   32   37   42   46   51   54   63   67 
LCS_GDT     Y     122     Y     122      3    9   19     3    3    5    7    9    9   12   14   17   19   21   26   29   34   40   45   50   54   63   67 
LCS_GDT     F     123     F     123      4    9   19     3    5    5    7    9    9   12   13   19   19   21   26   29   32   35   41   44   51   57   63 
LCS_GDT     R     124     R     124      4    9   19     3    4    4    7    8    9   12   13   19   20   22   26   29   30   35   37   40   44   49   56 
LCS_GDT     I     125     I     125      4    9   19     3    4    5    7    9    9   12   13   17   20   22   26   29   30   35   37   40   44   49   52 
LCS_GDT     S     126     S     126      4    9   19     3    4    5    7    9    9   12   13   15   18   21   26   29   30   32   35   39   44   48   50 
LCS_GDT     P     127     P     127      3    9   19     3    4    5    7    9    9   12   13   17   18   21   26   29   30   34   37   39   44   48   51 
LCS_GDT     R     128     R     128      3    9   19     3    3    4    6    9    9   11   14   17   20   25   28   31   33   36   41   43   47   49   51 
LCS_GDT     R     129     R     129      3    4   19     3    3    4    4    5    6    7   11   15   20   29   30   31   33   36   41   46   48   50   56 
LCS_GDT     V     130     V     130      3    4   19     0    3    4    4    5    6   10   12   14   14   17   21   26   30   34   40   46   48   54   59 
LCS_GDT     Q     131     Q     131      3    3   18     0    3    3    5    6    7   10   12   14   15   21   24   25   30   34   40   46   50   57   62 
LCS_GDT     A     132     A     132      3    3   15     0    3    3    3    3    5   10   12   15   18   22   24   26   33   37   42   51   54   57   63 
LCS_GDT     W     133     W     133      3    4   13     0    3    3    4    4    5    6    9   11   14   20   23   26   30   34   38   43   47   54   60 
LCS_GDT     R     134     R     134      3    8   13     1    3    3    5    5    6    9   10   10   17   20   23   26   31   37   40   42   48   52   63 
LCS_GDT     E     135     E     135      6    9   13     4    5    7    8    9    9   10   11   12   16   17   19   24   28   32   37   41   48   58   63 
LCS_GDT     A     136     A     136      6    9   13     4    5    7    8    9    9   10   11   12   16   16   18   21   24   27   32   39   46   48   57 
LCS_GDT     N     137     N     137      6    9   13     4    5    7    8    9    9    9   10   10   16   16   17   21   26   31   36   40   46   48   53 
LCS_GDT     E     138     E     138      6    9   16     4    5    7    8    9    9    9   10   10   15   20   23   26   30   37   40   42   47   54   60 
LCS_GDT     L     139     L     139      6    9   16     4    5    7    8    9    9    9   10   11   13   17   21   25   31   37   41   51   54   62   67 
LCS_GDT     S     140     S     140      6    9   16     4    5    7    8    9    9    9   10   10   16   16   20   23   26   31   36   42   47   53   60 
LCS_GDT     G     141     G     141      5    9   16     3    5    5    8    9   10   12   13   16   19   19   22   26   30   34   38   42   50   54   59 
LCS_GDT     R     142     R     142      5    9   16     4    5    7    8    9    9    9   12   16   19   19   22   26   31   37   41   46   54   57   63 
LCS_GDT     E     143     E     143      3    9   16     3    3    4    6    9    9    9   12   16   19   19   28   31   33   41   45   51   54   57   63 
LCS_GDT     L     144     L     144      3    7   16     3    3    5    6    6    8    9   12   13   14   16   19   22   26   30   34   42   48   54   59 
LCS_GDT     M     145     M     145      4    7   16     3    4    5    6    7   11   11   12   13   14   18   23   27   33   41   45   51   54   57   62 
LCS_GDT     R     146     R     146      4    7   16     3    4    5    6    7    8    9   12   13   14   18   23   27   33   41   45   51   54   57   62 
LCS_GDT     D     147     D     147      4    8   16     3    4    5    6    7    8    9   12   13   18   22   28   31   33   41   45   51   54   57   62 
LCS_GDT     G     148     G     148      4    8   16     3    4    6    6    8    8   10   12   16   19   22   28   31   33   41   45   51   54   57   62 
LCS_GDT     E     149     E     149      4    8   16     3    4    5    6    7    8    9   10   13   15   18   23   27   33   37   42   48   52   57   62 
LCS_GDT     W     150     W     150      4    8   16     3    4    5    6    7    8    9   11   13   14   15   18   24   28   33   40   46   50   54   59 
LCS_GDT     L     151     L     151      4    8   16     3    3    5    6    7    8    9   11   14   14   16   18   21   23   29   34   46   50   54   59 
LCS_GDT     V     152     V     152      4    8   16     3    3    5    6    7    8    9    9   10   12   13   14   15   17   18   25   30   35   36   42 
LCS_GDT     T     153     T     153      4    8   16     3    3    5    6    7    8    9    9   10   12   13   14   15   22   25   25   30   31   36   40 
LCS_GDT     D     154     D     154      4    8   15     2    3    5    6    7    8    9    9    9   11   13   14   14   17   17   19   21   22   36   40 
LCS_AVERAGE  LCS_A:   6.75  (   3.28    5.14   11.84 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     15     15     16     16     16     18     20     23     26     29     30     32     37     42     46     51     54     63     67 
GDT PERCENT_CA   8.44   9.74   9.74  10.39  10.39  10.39  11.69  12.99  14.94  16.88  18.83  19.48  20.78  24.03  27.27  29.87  33.12  35.06  40.91  43.51
GDT RMS_LOCAL    0.23   0.54   0.54   0.68   0.68   0.68   1.37   2.34   2.75   3.19   3.54   6.82   4.64   5.36   5.67   5.92   6.27   6.42   6.95   7.25
GDT RMS_ALL_CA  17.05  16.77  16.77  16.68  16.68  16.68  16.99  17.54  17.82  18.28  18.84  18.84  13.64  15.11  14.85  15.00  13.25  14.91  14.79  14.26

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         34.617
LGA    T       2      T       2         30.823
LGA    T       3      T       3         26.530
LGA    P       4      P       4         19.951
LGA    P       5      P       5         17.835
LGA    A       6      A       6         13.884
LGA    R       7      R       7          9.481
LGA    T       8      T       8          2.333
LGA    A       9      A       9          1.208
LGA    K      10      K      10          1.387
LGA    Q      11      Q      11          0.473
LGA    R      12      R      12          0.472
LGA    I      13      I      13          0.648
LGA    Q      14      Q      14          1.132
LGA    D      15      D      15          1.318
LGA    T      16      T      16          1.404
LGA    L      17      L      17          1.956
LGA    N      18      N      18          2.359
LGA    R      19      R      19          2.582
LGA    L      20      L      20          2.756
LGA    E      21      E      21          3.397
LGA    L      22      L      22          3.879
LGA    D      23      D      23          9.296
LGA    V      24      V      24         11.741
LGA    D      25      D      25         11.323
LGA    A      26      A      26         13.244
LGA    W      27      W      27         17.656
LGA    V      28      V      28         14.472
LGA    S      29      S      29         15.373
LGA    T      30      T      30         19.393
LGA    A      31      A      31         23.121
LGA    G      32      G      32         25.405
LGA    A      33      A      33         24.622
LGA    D      34      D      34         24.551
LGA    G      35      G      35         24.613
LGA    G      36      G      36         23.287
LGA    A      37      A      37         20.421
LGA    P      38      P      38         16.928
LGA    Y      39      Y      39         13.927
LGA    L      40      L      40         10.404
LGA    V      41      V      41         12.163
LGA    P      42      P      42         14.949
LGA    L      43      L      43         17.904
LGA    S      44      S      44         18.462
LGA    Y      45      Y      45         18.443
LGA    L      46      L      46         19.960
LGA    W      47      W      47         21.088
LGA    D      48      D      48         26.248
LGA    G      49      G      49         22.324
LGA    E      50      E      50         19.058
LGA    T      51      T      51         14.770
LGA    F      52      F      52         10.007
LGA    L      53      L      53          9.495
LGA    V      54      V      54          7.513
LGA    A      55      A      55          9.588
LGA    T      56      T      56          7.917
LGA    P      57      P      57          8.779
LGA    A      58      A      58          4.775
LGA    A      59      A      59          6.769
LGA    S      60      S      60          8.872
LGA    P      61      P      61         12.278
LGA    T      62      T      62         15.354
LGA    G      63      G      63         12.651
LGA    R      64      R      64          7.982
LGA    N      65      N      65          5.677
LGA    L      66      L      66          5.449
LGA    S      67      S      67          8.271
LGA    E      68      E      68          6.695
LGA    T      69      T      69          3.533
LGA    G      70      G      70          3.424
LGA    R      71      R      71          3.801
LGA    V      72      V      72          2.723
LGA    R      73      R      73          5.600
LGA    L      74      L      74          4.380
LGA    G      75      G      75          3.871
LGA    I      76      I      76          9.354
LGA    G      77      G      77         12.629
LGA    P      78      P      78         14.762
LGA    T      79      T      79         10.478
LGA    R      80      R      80         10.236
LGA    D      81      D      81          9.763
LGA    L      82      L      82          4.525
LGA    V      83      V      83          6.236
LGA    L      84      L      84          9.671
LGA    V      85      V      85         10.580
LGA    E      86      E      86         15.569
LGA    G      87      G      87         14.999
LGA    T      88      T      88         18.206
LGA    A      89      A      89         17.879
LGA    L      90      L      90         23.663
LGA    P      91      P      91         25.458
LGA    L      92      L      92         27.232
LGA    E      93      E      93         31.544
LGA    P      94      P      94         32.242
LGA    A      95      A      95         34.408
LGA    G      96      G      96         37.142
LGA    L      97      L      97         32.785
LGA    P      98      P      98         36.098
LGA    D      99      D      99         39.401
LGA    G     100      G     100         36.069
LGA    V     101      V     101         30.006
LGA    G     102      G     102         29.402
LGA    D     103      D     103         26.744
LGA    T     104      T     104         21.150
LGA    F     105      F     105         18.798
LGA    A     106      A     106         18.286
LGA    E     107      E     107         18.887
LGA    K     108      K     108         15.993
LGA    T     109      T     109         15.277
LGA    G     110      G     110         19.629
LGA    F     111      F     111         22.721
LGA    D     112      D     112         25.471
LGA    P     113      P     113         24.807
LGA    R     114      R     114         29.994
LGA    R     115      R     115         28.149
LGA    L     116      L     116         22.442
LGA    T     117      T     117         20.250
LGA    T     118      T     118         15.174
LGA    S     119      S     119         15.627
LGA    Y     120      Y     120         11.157
LGA    L     121      L     121         12.513
LGA    Y     122      Y     122         14.568
LGA    F     123      F     123         13.086
LGA    R     124      R     124         12.674
LGA    I     125      I     125         13.129
LGA    S     126      S     126         16.059
LGA    P     127      P     127         14.628
LGA    R     128      R     128         10.025
LGA    R     129      R     129          6.127
LGA    V     130      V     130         11.047
LGA    Q     131      Q     131         12.372
LGA    A     132      A     132         12.877
LGA    W     133      W     133         18.362
LGA    R     134      R     134         24.812
LGA    E     135      E     135         25.299
LGA    A     136      A     136         25.044
LGA    N     137      N     137         28.836
LGA    E     138      E     138         25.555
LGA    L     139      L     139         23.183
LGA    S     140      S     140         25.068
LGA    G     141      G     141         24.209
LGA    R     142      R     142         22.725
LGA    E     143      E     143         19.598
LGA    L     144      L     144         19.798
LGA    M     145      M     145         15.698
LGA    R     146      R     146         17.003
LGA    D     147      D     147         16.914
LGA    G     148      G     148         12.482
LGA    E     149      E     149         12.918
LGA    W     150      W     150         15.156
LGA    L     151      L     151         15.232
LGA    V     152      V     152         15.924
LGA    T     153      T     153         15.887
LGA    D     154      D     154         14.756

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     20    2.34    15.747    12.385     0.820

LGA_LOCAL      RMSD =  2.339  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.090  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 12.398  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.396733 * X  +  -0.170481 * Y  +  -0.901964 * Z  +   7.990308
  Y_new =   0.917728 * X  +  -0.052839 * Y  +  -0.393679 * Z  +  29.140013
  Z_new =   0.019456 * X  +  -0.983943 * Y  +   0.177418 * Z  +  17.737345 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.392400    1.749193  [ DEG:   -79.7786    100.2214 ]
  Theta =  -0.019457   -3.122136  [ DEG:    -1.1148   -178.8852 ]
  Phi   =   1.978833   -1.162760  [ DEG:   113.3788    -66.6212 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS168_3                                  
REMARK     2: T0370.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS168_3.T0370.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   20   2.34  12.385    12.40
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS168_3
PFRMAT TS
TARGET T0370
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      37.039  16.079  29.666  1.00 25.00           C
ATOM      2  CA  THR     2      34.047  17.975  31.032  1.00 25.00           C
ATOM      3  CA  THR     3      31.751  20.896  31.973  1.00 25.00           C
ATOM      4  CA  PRO     4      31.779  24.110  29.977  1.00 25.00           C
ATOM      5  CA  PRO     5      29.439  26.128  32.206  1.00 25.00           C
ATOM      6  CA  ALA     6      26.390  27.479  30.326  1.00 25.00           C
ATOM      7  CA  ARG     7      27.395  31.125  29.716  1.00 25.00           C
ATOM      8  CA  THR     8      27.603  30.462  25.950  1.00 25.00           C
ATOM      9  CA  ALA     9      24.131  28.846  26.017  1.00 25.00           C
ATOM     10  CA  LYS    10      22.734  31.869  27.910  1.00 25.00           C
ATOM     11  CA  GLN    11      24.296  34.234  25.334  1.00 25.00           C
ATOM     12  CA  ARG    12      22.756  32.189  22.486  1.00 25.00           C
ATOM     13  CA  ILE    13      19.334  32.333  24.200  1.00 25.00           C
ATOM     14  CA  GLN    14      19.668  36.127  24.602  1.00 25.00           C
ATOM     15  CA  ASP    15      20.580  36.465  20.898  1.00 25.00           C
ATOM     16  CA  THR    16      17.534  34.353  19.931  1.00 25.00           C
ATOM     17  CA  LEU    17      15.286  36.549  22.121  1.00 25.00           C
ATOM     18  CA  ASN    18      16.717  39.698  20.476  1.00 25.00           C
ATOM     19  CA  ARG    19      16.073  38.208  17.007  1.00 25.00           C
ATOM     20  CA  LEU    20      12.471  37.376  18.006  1.00 25.00           C
ATOM     21  CA  GLU    21      11.971  40.953  19.277  1.00 25.00           C
ATOM     22  CA  LEU    22       8.972  40.529  21.570  1.00 25.00           C
ATOM     23  CA  ASP    23       8.744  40.899  25.386  1.00 25.00           C
ATOM     24  CA  VAL    24      10.515  37.541  25.789  1.00 25.00           C
ATOM     25  CA  ASP    25       9.094  35.013  23.288  1.00 25.00           C
ATOM     26  CA  ALA    26       6.775  33.605  25.991  1.00 25.00           C
ATOM     27  CA  TRP    27       5.591  37.143  26.854  1.00 25.00           C
ATOM     28  CA  VAL    28       4.909  37.843  23.151  1.00 25.00           C
ATOM     29  CA  SER    29       2.920  34.583  22.875  1.00 25.00           C
ATOM     30  CA  THR    30       0.881  35.535  25.974  1.00 25.00           C
ATOM     31  CA  ALA    31      -0.250  38.361  23.698  1.00 25.00           C
ATOM     32  CA  GLY    32      -3.904  39.174  24.023  1.00 25.00           C
ATOM     33  CA  ALA    33      -4.972  35.843  25.417  1.00 25.00           C
ATOM     34  CA  ASP    34      -5.589  32.883  23.106  1.00 25.00           C
ATOM     35  CA  GLY    35      -3.414  30.264  24.806  1.00 25.00           C
ATOM     36  CA  GLY    36      -2.120  26.805  24.120  1.00 25.00           C
ATOM     37  CA  ALA    37       1.289  25.143  23.486  1.00 25.00           C
ATOM     38  CA  PRO    38       4.541  24.626  21.529  1.00 25.00           C
ATOM     39  CA  TYR    39       5.975  26.341  18.397  1.00 25.00           C
ATOM     40  CA  LEU    40       7.103  28.382  15.428  1.00 25.00           C
ATOM     41  CA  VAL    41      10.100  26.467  13.928  1.00 25.00           C
ATOM     42  CA  PRO    42      10.365  24.207  17.017  1.00 25.00           C
ATOM     43  CA  LEU    43      12.046  24.325  20.363  1.00 25.00           C
ATOM     44  CA  SER    44      14.586  26.986  21.492  1.00 25.00           C
ATOM     45  CA  TYR    45      16.628  25.092  18.902  1.00 25.00           C
ATOM     46  CA  LEU    46      15.237  23.215  15.899  1.00 25.00           C
ATOM     47  CA  TRP    47      15.925  21.439  12.673  1.00 25.00           C
ATOM     48  CA  ASP    48      18.044  22.040   9.595  1.00 25.00           C
ATOM     49  CA  GLY    49      19.615  24.839  11.688  1.00 25.00           C
ATOM     50  CA  GLU    50      17.757  27.737  13.347  1.00 25.00           C
ATOM     51  CA  THR    51      14.583  28.210  15.494  1.00 25.00           C
ATOM     52  CA  PHE    52      11.707  29.683  17.517  1.00 25.00           C
ATOM     53  CA  LEU    53       8.993  31.637  19.333  1.00 25.00           C
ATOM     54  CA  VAL    54       5.325  30.827  19.775  1.00 25.00           C
ATOM     55  CA  ALA    55       2.075  28.845  20.085  1.00 25.00           C
ATOM     56  CA  THR    56      -0.949  30.376  18.388  1.00 25.00           C
ATOM     57  CA  PRO    57      -3.160  28.649  15.795  1.00 25.00           C
ATOM     58  CA  ALA    58      -6.793  28.020  14.681  1.00 25.00           C
ATOM     59  CA  ALA    59      -8.565  24.622  14.896  1.00 25.00           C
ATOM     60  CA  SER    60     -12.210  25.090  15.916  1.00 25.00           C
ATOM     61  CA  PRO    61     -15.042  22.493  15.856  1.00 25.00           C
ATOM     62  CA  THR    62     -15.400  21.876  19.593  1.00 25.00           C
ATOM     63  CA  GLY    63     -12.930  19.052  20.265  1.00 25.00           C
ATOM     64  CA  ARG    64     -10.670  18.601  17.274  1.00 25.00           C
ATOM     65  CA  ASN    65      -8.247  18.522  14.396  1.00 25.00           C
ATOM     66  CA  LEU    66      -5.490  19.047  16.943  1.00 25.00           C
ATOM     67  CA  SER    67      -4.788  15.461  17.874  1.00 25.00           C
ATOM     68  CA  GLU    68      -2.178  15.679  15.060  1.00 25.00           C
ATOM     69  CA  THR    69      -0.368  18.447  17.009  1.00 25.00           C
ATOM     70  CA  GLY    70       0.890  20.710  19.795  1.00 25.00           C
ATOM     71  CA  ARG    71      -1.027  23.848  18.715  1.00 25.00           C
ATOM     72  CA  VAL    72       1.260  25.952  16.511  1.00 25.00           C
ATOM     73  CA  ARG    73       2.479  29.134  14.883  1.00 25.00           C
ATOM     74  CA  LEU    74       4.494  31.368  12.475  1.00 25.00           C
ATOM     75  CA  GLY    75       6.899  29.503  10.203  1.00 25.00           C
ATOM     76  CA  ILE    76       8.032  26.083   8.973  1.00 25.00           C
ATOM     77  CA  GLY    77      11.248  24.052   9.598  1.00 25.00           C
ATOM     78  CA  PRO    78      11.425  23.816   5.799  1.00 25.00           C
ATOM     79  CA  THR    79      12.984  26.954   4.365  1.00 25.00           C
ATOM     80  CA  ARG    80      11.620  29.889   6.337  1.00 25.00           C
ATOM     81  CA  ASP    81      11.932  29.188  10.050  1.00 25.00           C
ATOM     82  CA  LEU    82      12.371  31.793  12.755  1.00 25.00           C
ATOM     83  CA  VAL    83       9.094  32.784  14.437  1.00 25.00           C
ATOM     84  CA  LEU    84       6.356  34.701  16.192  1.00 25.00           C
ATOM     85  CA  VAL    85       2.649  33.860  16.823  1.00 25.00           C
ATOM     86  CA  GLU    86       0.384  36.317  15.036  1.00 25.00           C
ATOM     87  CA  GLY    87       2.582  35.868  11.916  1.00 25.00           C
ATOM     88  CA  THR    88       5.118  38.518  13.066  1.00 25.00           C
ATOM     89  CA  ALA    89       7.566  39.664  15.697  1.00 25.00           C
ATOM     90  CA  LEU    90      10.183  41.619  13.696  1.00 25.00           C
ATOM     91  CA  PRO    91       8.785  44.898  12.467  1.00 25.00           C
ATOM     92  CA  LEU    92       8.584  45.130   8.692  1.00 25.00           C
ATOM     93  CA  GLU    93      12.150  45.216   7.324  1.00 25.00           C
ATOM     94  CA  PRO    94      12.139  46.202   3.616  1.00 25.00           C
ATOM     95  CA  ALA    95      10.148  43.176   2.373  1.00 25.00           C
ATOM     96  CA  GLY    96      13.408  41.357   1.622  1.00 25.00           C
ATOM     97  CA  LEU    97      14.788  40.021   4.924  1.00 25.00           C
ATOM     98  CA  PRO    98      18.545  39.171   5.193  1.00 25.00           C
ATOM     99  CA  ASP    99      18.826  36.376   2.605  1.00 25.00           C
ATOM    100  CA  GLY   100      17.870  32.902   3.881  1.00 25.00           C
ATOM    101  CA  VAL   101      17.841  34.156   7.472  1.00 25.00           C
ATOM    102  CA  GLY   102      19.146  35.274  10.865  1.00 25.00           C
ATOM    103  CA  ASP   103      16.507  37.947  10.503  1.00 25.00           C
ATOM    104  CA  THR   104      12.831  37.181  10.708  1.00 25.00           C
ATOM    105  CA  PHE   105      10.193  34.741   9.320  1.00 25.00           C
ATOM    106  CA  ALA   106       6.524  34.790   8.492  1.00 25.00           C
ATOM    107  CA  GLU   107       4.442  36.885   6.101  1.00 25.00           C
ATOM    108  CA  LYS   108       2.050  39.565   4.803  1.00 25.00           C
ATOM    109  CA  THR   109       0.148  36.924   2.969  1.00 25.00           C
ATOM    110  CA  GLY   110      -0.629  34.422   0.246  1.00 25.00           C
ATOM    111  CA  PHE   111       1.022  32.597  -2.625  1.00 25.00           C
ATOM    112  CA  ASP   112      -1.011  29.430  -1.888  1.00 25.00           C
ATOM    113  CA  PRO   113       1.867  27.568  -0.266  1.00 25.00           C
ATOM    114  CA  ARG   114       2.019  23.817   0.494  1.00 25.00           C
ATOM    115  CA  ARG   115      -1.129  24.102   2.656  1.00 25.00           C
ATOM    116  CA  LEU   116      -3.796  26.762   2.126  1.00 25.00           C
ATOM    117  CA  THR   117      -3.521  30.454   2.718  1.00 25.00           C
ATOM    118  CA  THR   118      -2.639  32.449   5.775  1.00 25.00           C
ATOM    119  CA  SER   119      -0.746  33.653   8.846  1.00 25.00           C
ATOM    120  CA  TYR   120      -1.171  32.160  12.314  1.00 25.00           C
ATOM    121  CA  LEU   121      -0.219  28.795  10.789  1.00 25.00           C
ATOM    122  CA  TYR   122       2.351  26.068  10.797  1.00 25.00           C
ATOM    123  CA  PHE   123       5.151  24.532  12.845  1.00 25.00           C
ATOM    124  CA  ARG   124       5.220  22.174  15.877  1.00 25.00           C
ATOM    125  CA  ILE   125       6.565  19.049  14.077  1.00 25.00           C
ATOM    126  CA  SER   126       8.336  15.707  13.698  1.00 25.00           C
ATOM    127  CA  PRO   127      10.135  13.470  16.189  1.00 25.00           C
ATOM    128  CA  ARG   128      12.897  15.959  17.105  1.00 25.00           C
ATOM    129  CA  ARG   129      10.308  18.767  17.386  1.00 25.00           C
ATOM    130  CA  VAL   130       8.132  16.568  19.642  1.00 25.00           C
ATOM    131  CA  GLN   131      11.163  15.788  21.849  1.00 25.00           C
ATOM    132  CA  ALA   132      11.974  19.524  22.096  1.00 25.00           C
ATOM    133  CA  TRP   133       8.347  20.271  23.075  1.00 25.00           C
ATOM    134  CA  ARG   134       8.482  17.542  25.758  1.00 25.00           C
ATOM    135  CA  GLU   135      11.749  19.008  27.119  1.00 25.00           C
ATOM    136  CA  ALA   136      10.165  22.493  27.233  1.00 25.00           C
ATOM    137  CA  ASN   137       7.135  21.082  29.103  1.00 25.00           C
ATOM    138  CA  GLU   138       9.458  19.352  31.610  1.00 25.00           C
ATOM    139  CA  LEU   139      11.368  22.629  32.140  1.00 25.00           C
ATOM    140  CA  SER   140       8.069  24.487  32.720  1.00 25.00           C
ATOM    141  CA  GLY   141       6.991  21.830  35.259  1.00 25.00           C
ATOM    142  CA  ARG   142      10.351  22.161  37.068  1.00 25.00           C
ATOM    143  CA  GLU   143       9.948  25.968  37.171  1.00 25.00           C
ATOM    144  CA  LEU   144       6.415  25.580  38.598  1.00 25.00           C
ATOM    145  CA  MET   145       5.105  27.649  35.725  1.00 25.00           C
ATOM    146  CA  ARG   146       2.217  25.191  35.577  1.00 25.00           C
ATOM    147  CA  ASP   147      -0.239  27.990  34.809  1.00 25.00           C
ATOM    148  CA  GLY   148       1.748  30.195  32.451  1.00 25.00           C
ATOM    149  CA  GLU   149       1.791  29.024  28.843  1.00 25.00           C
ATOM    150  CA  TRP   150       1.842  29.874  25.090  1.00 25.00           C
ATOM    151  CA  LEU   151       5.461  28.853  24.530  1.00 25.00           C
ATOM    152  CA  VAL   152       8.585  27.730  22.647  1.00 25.00           C
ATOM    153  CA  THR   153      10.925  27.224  25.578  1.00 25.00           C
ATOM    154  CA  ASP   154      14.350  27.454  27.185  1.00 25.00           C
TER
END
