
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0370TS393_1
# Molecule2: number of CA atoms  154 ( 1177),  selected  154 , name T0370.pdb
# PARAMETERS: T0370TS393_1.T0370.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         4 - 28          4.88    21.81
  LONGEST_CONTINUOUS_SEGMENT:    25         5 - 29          4.64    22.14
  LONGEST_CONTINUOUS_SEGMENT:    25         6 - 30          4.83    22.53
  LCS_AVERAGE:     12.84

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19         8 - 26          1.90    21.89
  LCS_AVERAGE:      5.49

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         8 - 23          0.63    22.23
  LCS_AVERAGE:      3.38

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     M       1     M       1      3    6   18     3    3    3    4    6    7    9   11   13   15   15   16   17   20   25   30   33   38   41   44 
LCS_GDT     T       2     T       2      3    6   18     3    3    4    4    6    7    9   11   13   15   15   16   17   19   22   30   32   34   39   43 
LCS_GDT     T       3     T       3      3    6   20     3    3    4    4    6    7    9   11   13   15   15   16   17   19   22   30   32   36   40   43 
LCS_GDT     P       4     P       4      3    6   25     3    3    4    4    6    8   10   11   14   19   21   23   29   30   30   35   39   44   50   51 
LCS_GDT     P       5     P       5      3    6   25     3    3    4    5    6   10   17   20   20   23   25   28   30   32   38   40   45   48   50   51 
LCS_GDT     A       6     A       6      3    6   25     3    3    3    5    8   14   17   20   20   25   25   28   30   32   38   40   45   48   50   51 
LCS_GDT     R       7     R       7      3   17   25     2    3    3    4    8   14   17   20   23   26   28   29   34   38   40   40   45   48   50   54 
LCS_GDT     T       8     T       8     16   19   25    10   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     A       9     A       9     16   19   25    13   16   16   17   18   19   21   22   23   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     K      10     K      10     16   19   25    13   16   16   17   18   19   21   22   23   26   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     Q      11     Q      11     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     R      12     R      12     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     I      13     I      13     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     Q      14     Q      14     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     D      15     D      15     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     T      16     T      16     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     L      17     L      17     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   55   60 
LCS_GDT     N      18     N      18     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   53 
LCS_GDT     R      19     R      19     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   53 
LCS_GDT     L      20     L      20     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   57 
LCS_GDT     E      21     E      21     16   19   25    13   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   53 
LCS_GDT     L      22     L      22     16   19   25     3    4    7   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   51 
LCS_GDT     D      23     D      23     16   19   25    11   16   16   17   18   19   21   22   28   31   34   34   37   39   40   40   45   48   50   51 
LCS_GDT     V      24     V      24      4   19   25     3    4    4    4    6    8   12   20   24   30   32   33   35   39   40   40   45   48   50   51 
LCS_GDT     D      25     D      25      3   19   25     3    3    7   11   17   18   19   21   28   31   34   34   37   39   40   40   45   48   50   51 
LCS_GDT     A      26     A      26      3   19   25     3    4    7   16   16   19   21   22   28   31   34   34   37   39   40   40   45   50   55   62 
LCS_GDT     W      27     W      27      3    3   25     3    3    5    6    7   10   13   13   17   21   25   27   29   34   38   40   45   48   50   61 
LCS_GDT     V      28     V      28      3    4   25     3    3    5    6    8   10   13   15   19   21   23   27   29   34   38   40   45   50   58   62 
LCS_GDT     S      29     S      29      3    4   25     0    3    5    8    9   11   13   15   19   23   28   32   37   40   45   47   50   57   59   62 
LCS_GDT     T      30     T      30      3    4   25     3    3    4    4   11   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     A      31     A      31      4    6   21     3    3    6    9   11   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     G      32     G      32      4    6   21     3    3    6    9   11   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     A      33     A      33      4    8   21     3    3    4    5    7    9   14   20   24   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     D      34     D      34      4    8   21     3    3    4    6    9   12   13   17   19   21   23   27   33   36   39   47   50   55   59   62 
LCS_GDT     G      35     G      35      3    8   21     3    3    4    7    9   12   14   17   19   21   23   27   30   33   39   47   50   54   59   62 
LCS_GDT     G      36     G      36      3    8   21     0    3    6    8    8   12   14   17   19   21   23   26   30   33   36   41   44   47   54   58 
LCS_GDT     A      37     A      37      3    8   21     3    3    6    8    9   12   14   17   19   21   23   27   30   33   36   41   44   48   54   58 
LCS_GDT     P      38     P      38      3    8   21     3    3    6    8    9   12   14   17   19   21   23   27   30   33   36   41   45   48   54   58 
LCS_GDT     Y      39     Y      39      3    8   21     3    3    6    8    9   12   14   17   19   21   23   27   30   33   36   41   44   50   54   61 
LCS_GDT     L      40     L      40      3    8   21     3    3    6    8    9   12   14   17   19   21   23   27   37   41   46   51   53   57   59   62 
LCS_GDT     V      41     V      41      3    8   21     3    3    6    8    9   12   14   18   21   25   30   33   37   41   46   51   53   57   59   62 
LCS_GDT     P      42     P      42      5    6   21     3    4    5    5    9   12   14   17   20   23   30   33   37   41   46   51   53   57   59   62 
LCS_GDT     L      43     L      43      5    6   21     3    4    5    7    9   12   14   18   21   23   26   32   37   40   45   51   53   57   59   62 
LCS_GDT     S      44     S      44      5    6   21     3    4    5    5    6    8   11   15   18   21   26   31   35   40   44   51   53   57   59   62 
LCS_GDT     Y      45     Y      45      5    6   21     3    4    5    7    8   11   13   15   22   27   30   34   37   40   44   51   53   57   59   62 
LCS_GDT     L      46     L      46      5    6   21     3    4    5    6    6    9   13   17   21   23   31   34   37   39   40   43   49   54   59   61 
LCS_GDT     W      47     W      47      4    5   21     3    4    4    6    9   11   16   19   25   27   30   32   35   41   46   51   53   57   59   62 
LCS_GDT     D      48     D      48      4    5   21     3    4    4    6    8   11   13   16   22   26   30   32   37   39   40   51   53   57   59   61 
LCS_GDT     G      49     G      49      4    9   21     3    4    6    8    9   11   18   23   27   31   34   34   37   42   46   51   53   57   59   62 
LCS_GDT     E      50     E      50      4    9   20     3    4    6    9   12   18   19   23   28   31   34   34   37   42   46   51   53   57   59   62 
LCS_GDT     T      51     T      51      4    9   20     3    4    6    9   12   18   19   23   28   31   34   34   37   42   46   51   53   57   59   62 
LCS_GDT     F      52     F      52      4    9   20     3    4    5    9   12   18   19   23   28   31   34   34   37   42   46   51   53   57   59   62 
LCS_GDT     L      53     L      53      4    9   19     3    4    4    6    8   10   19   23   28   31   34   34   37   42   46   51   53   57   59   62 
LCS_GDT     V      54     V      54      4    9   19     3    4    6    8   11   15   16   21   28   31   34   34   37   39   46   51   53   57   59   61 
LCS_GDT     A      55     A      55      4    9   19     3    4    6    8   11   15   16   21   27   31   34   34   37   39   40   43   49   51   56   61 
LCS_GDT     T      56     T      56      3    9   19     3    3    6    8   11   15   16   21   27   31   34   34   37   39   40   45   49   54   57   61 
LCS_GDT     P      57     P      57      3    9   19     3    4    6    8    9   11   13   15   26   30   34   34   37   39   40   45   49   54   57   61 
LCS_GDT     A      58     A      58      4    7   19     3    4    4    7    8   12   16   20   28   31   34   34   37   39   40   43   49   51   56   61 
LCS_GDT     A      59     A      59      4    6   19     3    4    4    5    9   12   16   20   28   31   34   34   37   39   42   45   49   54   57   61 
LCS_GDT     S      60     S      60      5    5   19     3    5    5    7    9   10   16   20   28   31   34   34   37   39   43   46   52   54   57   61 
LCS_GDT     P      61     P      61      5    5   19     3    5    5    7    7    8    9   12   28   31   34   34   37   39   43   46   52   55   58   61 
LCS_GDT     T      62     T      62      5    5   18     3    5    5    5    5    7    8    9   11   11   12   16   18   19   29   31   33   34   40   49 
LCS_GDT     G      63     G      63      5    5   17     3    5    5    7    8    8    9    9   11   13   16   17   19   32   35   36   38   42   50   61 
LCS_GDT     R      64     R      64      5    5   17     3   16   16   17   17   18   19   22   23   25   26   30   32   36   43   46   52   55   57   61 
LCS_GDT     N      65     N      65      4    4   17     3    4    6   17   18   19   21   22   23   25   28   30   33   39   43   48   52   55   58   61 
LCS_GDT     L      66     L      66      4    4   17     3    4    6   17   18   19   21   22   23   25   28   30   32   36   43   46   52   54   57   61 
LCS_GDT     S      67     S      67      4    8   17     3    3    5   17   18   19   21   22   23   25   28   29   32   36   40   45   49   54   57   61 
LCS_GDT     E      68     E      68      4    8   17     3    3    5    7    8   10   13   17   19   21   26   31   37   39   43   46   52   54   57   61 
LCS_GDT     T      69     T      69      4    8   17     3    4    6    7    9   11   13   15   19   21   26   31   37   39   43   46   52   55   58   61 
LCS_GDT     G      70     G      70      4    8   17     3    3    5    7    8   11   13   17   19   23   26   30   32   39   43   46   52   55   57   61 
LCS_GDT     R      71     R      71      4    8   17     3    4    5    7    9   11   13   15   19   25   30   33   37   41   46   51   53   57   59   61 
LCS_GDT     V      72     V      72      4    8   17     3    4    5    7    9   12   18   20   22   27   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     R      73     R      73      4    8   17     3    4    5    8   12   15   18   20   24   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     L      74     L      74      4    8   17     3    4    6    8   12   15   18   20   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     G      75     G      75      3    7   17     3    3    5    6   10   15   18   20   23   25   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     I      76     I      76      4    6   17     4    4    4    5    6   14   18   20   23   25   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     G      77     G      77      4    6   15     4    4    4    6    6    9   10   13   17   20   27   34   37   42   46   51   53   57   59   62 
LCS_GDT     P      78     P      78      4    6   15     4    4    4    6    6    9   10   13   15   17   19   30   35   40   45   47   52   57   59   62 
LCS_GDT     T      79     T      79      4    6   15     4    4    4    5    6    9   10   12   13   14   16   27   29   31   33   36   42   43   46   48 
LCS_GDT     R      80     R      80      4    6   15     3    4    4    5    6    8    8   10   12   13   14   16   17   21   21   31   34   37   46   47 
LCS_GDT     D      81     D      81      4    6   15     3    4    4    4    6    8   10   12   13   14   14   16   18   21   21   22   26   28   34   39 
LCS_GDT     L      82     L      82      4    6   15     3    4    4    4    5    9   10   12   13   14   14   16   18   21   21   23   26   29   34   39 
LCS_GDT     V      83     V      83      4    6   17     1    4    4    5    6    9   10   12   13   14   17   19   20   21   23   28   32   33   39   42 
LCS_GDT     L      84     L      84      4    6   18     1    4    4    5    8   11   16   20   23   25   26   28   32   34   38   40   45   48   50   54 
LCS_GDT     V      85     V      85      4    7   18     1    4    4    6   16   19   21   22   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     E      86     E      86      6    7   18     2    5    6    7    7   15   16   21   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     G      87     G      87      6    7   18     3    5    6    7    7   15   16   21   28   31   34   34   37   39   40   40   45   48   50   54 
LCS_GDT     T      88     T      88      6    7   18     3    5    6    7    7    9   10   12   13   15   21   26   27   33   34   39   44   45   48   55 
LCS_GDT     A      89     A      89      6    7   18     3    5    6    7    7    9   10   12   14   17   19   26   27   29   32   36   44   45   45   55 
LCS_GDT     L      90     L      90      6    7   19     3    5    6    7    7    9   10   12   14   18   19   26   27   29   32   36   44   45   45   49 
LCS_GDT     P      91     P      91      6    7   19     3    5    6    7    7    9   10   12   14   18   19   21   25   26   28   31   34   40   43   45 
LCS_GDT     L      92     L      92      4    7   19     3    4    5    5    7    9   10   12   14   18   19   21   25   26   28   31   34   38   41   45 
LCS_GDT     E      93     E      93      4    7   19     3    4    5    5    7    9   10   12   14   18   19   21   25   26   28   31   34   36   38   42 
LCS_GDT     P      94     P      94      3    7   19     3    3    4    7    7    9   10   12   13   15   17   21   25   26   28   31   33   38   40   45 
LCS_GDT     A      95     A      95      3    7   19     3    3    4    5    7    8   10   11   14   18   19   21   25   26   28   32   37   42   45   50 
LCS_GDT     G      96     G      96      3    7   19     3    4    5    6    6    8    8   14   15   18   19   22   30   31   35   37   41   45   49   53 
LCS_GDT     L      97     L      97      3    6   19     3    4    5    6    7    9   10   12   14   18   20   25   30   31   35   38   41   45   49   54 
LCS_GDT     P      98     P      98      4    6   19     4    4    5    7    7    8    9   13   15   18   22   25   29   31   35   38   42   46   49   54 
LCS_GDT     D      99     D      99      4    6   19     4    4    4    7    7    8   10   13   15   18   22   25   29   31   35   38   42   46   49   54 
LCS_GDT     G     100     G     100      4    6   19     4    4    4    7    7    8    9   13   15   18   22   25   30   31   35   38   42   46   49   54 
LCS_GDT     V     101     V     101      4    6   19     4    4    4    7    7    8   10   13   15   18   22   25   30   31   35   38   42   46   49   54 
LCS_GDT     G     102     G     102      3    6   19     3    3    4    6    7    9   10   12   15   19   22   30   31   36   38   41   42   46   49   55 
LCS_GDT     D     103     D     103      3    4   19     3    3    4    6    7    9   13   19   22   26   30   31   34   36   39   43   46   49   55   58 
LCS_GDT     T     104     T     104      3    4   19     3    3    4    6   11   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     F     105     F     105      3    4   19     3    3    4    6   11   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     A     106     A     106      3    4   19     0    3    3    3    7   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     E     107     E     107      3    7   20     3    4    5    6    7    8   10   11   14   18   22   30   37   42   45   47   52   57   59   62 
LCS_GDT     K     108     K     108      3    7   20     3    3    3    6    6    7    9   11   14   19   22   23   25   28   31   41   49   52   56   60 
LCS_GDT     T     109     T     109      4    7   22     3    4    5    6    6    7    9   10   17   19   22   25   28   40   45   47   49   56   59   62 
LCS_GDT     G     110     G     110      4    7   22     3    4    5    6    7   11   18   18   21   25   30   33   37   42   46   51   53   57   59   62 
LCS_GDT     F     111     F     111      4    8   22     3    4    5    6    7   10   12   18   20   25   30   33   37   42   46   51   53   57   59   62 
LCS_GDT     D     112     D     112      4    8   22     3    4    4    6    7   10   10   14   17   20   27   32   37   42   46   51   53   57   59   62 
LCS_GDT     P     113     P     113      4    8   22     3    4    5    5    7   10   10   12   17   25   30   34   37   42   46   51   53   57   59   62 
LCS_GDT     R     114     R     114      4    8   22     3    4    4    6   11   15   18   20   23   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     R     115     R     115      4    8   22     3    4    6    9   12   18   19   21   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     L     116     L     116      3    8   22     3    4    6    9   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     T     117     T     117      4   10   22     3    4    6    9   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     T     118     T     118      4   10   22     3    4    6    8   10   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     S     119     S     119      4   10   22     3    4    4    8   10   11   16   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     Y     120     Y     120      4   10   22     0    4    5    7   10   14   18   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     L     121     L     121      4   10   22     3    4    6    8   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     Y     122     Y     122      4   10   22     3    4    6    8   10   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     F     123     F     123      4   10   22     3    4    6    8   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     R     124     R     124      4   10   22     3    4    6    8   10   11   16   20   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     I     125     I     125      4   10   22     3    3    6    9   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     S     126     S     126      4   10   22     3    3    6    9   12   18   19   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     P     127     P     127      3   10   22     3    3    5    7    9   12   18   23   25   27   30   34   37   42   46   51   53   57   59   62 
LCS_GDT     R     128     R     128      3    4   22     3    3    4    7    9   12   18   23   25   28   32   34   37   42   46   51   53   57   59   62 
LCS_GDT     R     129     R     129      3    4   22     3    3    5    6    9   11   13   15   18   23   28   33   37   42   46   51   53   57   59   62 
LCS_GDT     V     130     V     130      3    4   22     3    3    5    6    9   11   13   15   19   26   28   33   37   42   46   51   53   57   59   62 
LCS_GDT     Q     131     Q     131      3    3   22     1    3    4    5    9   11   13   15   19   26   28   32   37   42   44   50   53   57   59   62 
LCS_GDT     A     132     A     132      3    3   21     0    3    5    6    7    7    8   11   16   21   22   28   33   37   42   47   50   55   59   62 
LCS_GDT     W     133     W     133      3    4   20     0    3    3    4    4    7    8    9   10   10   13   15   22   27   32   42   50   55   59   62 
LCS_GDT     R     134     R     134      3    8   13     1    3    3    6    7    7    9   10   10   10   12   17   20   25   30   37   49   55   59   62 
LCS_GDT     E     135     E     135      6    9   13     4    5    7    8    9    9   10   10   10   10   12   14   16   19   22   31   39   48   59   62 
LCS_GDT     A     136     A     136      6    9   13     4    5    7    8    9    9   10   10   10   10   12   15   16   19   23   29   37   43   54   62 
LCS_GDT     N     137     N     137      6    9   13     4    5    7    8    9    9   10   10   10   10   13   15   16   18   19   22   28   38   43   54 
LCS_GDT     E     138     E     138      6    9   13     4    5    7    8    9    9   10   10   13   20   27   30   37   40   45   50   53   57   59   62 
LCS_GDT     L     139     L     139      6    9   13     4    5    7    8    9    9   10   10   17   20   27   32   37   42   46   51   53   57   59   62 
LCS_GDT     S     140     S     140      6    9   15     4    5    7    8    9    9   10   10   10   10   13   14   24   30   35   47   49   53   57   61 
LCS_GDT     G     141     G     141      5    9   15     3    5    5    8    9    9   10   10   11   15   21   30   36   40   45   47   51   57   59   61 
LCS_GDT     R     142     R     142      5    9   15     4    5    7    8    9   10   17   19   22   27   32   34   37   42   46   51   53   57   59   61 
LCS_GDT     E     143     E     143      4    9   15     3    4    6    7    9    9   10   13   19   20   24   27   33   37   40   44   48   52   57   61 
LCS_GDT     L     144     L     144      4    7   15     3    3    6    7    8    9   10   11   15   18   22   27   29   36   38   41   45   49   53   56 
LCS_GDT     M     145     M     145      4    6   15     3    3    4    6    8    8    9   11   15   18   22   27   29   31   33   37   41   49   53   56 
LCS_GDT     R     146     R     146      4    6   15     3    3    4    6    7    8    9   11   17   18   22   25   29   31   33   36   38   39   53   56 
LCS_GDT     D     147     D     147      4    5   15     3    3    4    6    7    8    9   11   14   18   22   25   27   28   33   36   38   39   48   51 
LCS_GDT     G     148     G     148      4    5   15     3    3    4    6    6    7    8   11   13   16   19   23   27   28   29   32   34   39   42   51 
LCS_GDT     E     149     E     149      4    6   15     3    4    5    6    6    7    8    9   11   15   17   20   23   24   26   30   34   37   42   43 
LCS_GDT     W     150     W     150      4    6   15     3    4    5    6    6    7    8    9   11   13   17   19   21   24   26   30   34   36   36   39 
LCS_GDT     L     151     L     151      4    6   15     3    4    5    6    6    7    8    9   11   13   17   19   21   24   26   30   34   35   36   39 
LCS_GDT     V     152     V     152      4    6   15     3    4    5    6    6    7    8   12   13   13   17   19   22   24   26   30   34   35   36   39 
LCS_GDT     T     153     T     153      4    6   15     3    4    5    6    6    7    8    9    9   11   13   16   17   21   21   23   28   33   36   39 
LCS_GDT     D     154     D     154      4    6   15     1    4    5    6    6    7    8    9    9   11   13   16   17   21   21   23   28   33   36   39 
LCS_AVERAGE  LCS_A:   7.24  (   3.38    5.49   12.84 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     16     17     18     19     21     23     28     31     34     34     37     42     46     51     53     57     59     62 
GDT PERCENT_CA   8.44  10.39  10.39  11.04  11.69  12.34  13.64  14.94  18.18  20.13  22.08  22.08  24.03  27.27  29.87  33.12  34.42  37.01  38.31  40.26
GDT RMS_LOCAL    0.23   0.47   0.47   0.64   1.02   1.17   1.60   2.92   3.33   3.55   3.75   3.75   4.12   4.88   5.20   5.54   5.68   6.02   6.16   6.93
GDT RMS_ALL_CA  22.20  22.27  22.27  22.26  22.27  22.25  22.14  19.49  21.80  21.80  21.82  21.82  21.80  18.49  18.42  18.49  18.42  18.44  18.43  18.32

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         55.055
LGA    T       2      T       2         55.754
LGA    T       3      T       3         52.796
LGA    P       4      P       4         49.646
LGA    P       5      P       5         50.133
LGA    A       6      A       6         43.964
LGA    R       7      R       7         39.786
LGA    T       8      T       8         40.041
LGA    A       9      A       9         35.178
LGA    K      10      K      10         29.895
LGA    Q      11      Q      11         32.254
LGA    R      12      R      12         31.946
LGA    I      13      I      13         25.092
LGA    Q      14      Q      14         23.720
LGA    D      15      D      15         28.021
LGA    T      16      T      16         23.646
LGA    L      17      L      17         17.878
LGA    N      18      N      18         22.640
LGA    R      19      R      19         23.768
LGA    L      20      L      20         16.797
LGA    E      21      E      21         18.000
LGA    L      22      L      22         23.411
LGA    D      23      D      23         24.016
LGA    V      24      V      24         20.696
LGA    D      25      D      25         18.536
LGA    A      26      A      26         13.103
LGA    W      27      W      27         13.154
LGA    V      28      V      28         10.970
LGA    S      29      S      29          7.754
LGA    T      30      T      30          3.358
LGA    A      31      A      31          3.207
LGA    G      32      G      32          2.865
LGA    A      33      A      33          5.340
LGA    D      34      D      34         10.009
LGA    G      35      G      35         13.765
LGA    G      36      G      36         16.236
LGA    A      37      A      37         14.820
LGA    P      38      P      38         15.422
LGA    Y      39      Y      39         13.637
LGA    L      40      L      40         11.557
LGA    V      41      V      41         11.747
LGA    P      42      P      42         11.809
LGA    L      43      L      43         10.563
LGA    S      44      S      44          7.700
LGA    Y      45      Y      45          5.463
LGA    L      46      L      46          7.753
LGA    W      47      W      47          4.837
LGA    D      48      D      48          5.788
LGA    G      49      G      49          3.199
LGA    E      50      E      50          2.821
LGA    T      51      T      51          3.863
LGA    F      52      F      52          3.739
LGA    L      53      L      53          3.477
LGA    V      54      V      54          5.684
LGA    A      55      A      55         11.075
LGA    T      56      T      56         11.882
LGA    P      57      P      57         13.541
LGA    A      58      A      58         18.817
LGA    A      59      A      59         19.302
LGA    S      60      S      60         15.483
LGA    P      61      P      61         17.075
LGA    T      62      T      62         19.370
LGA    G      63      G      63         19.392
LGA    R      64      R      64         17.203
LGA    N      65      N      65         16.084
LGA    L      66      L      66         17.949
LGA    S      67      S      67         20.745
LGA    E      68      E      68         18.209
LGA    T      69      T      69         16.733
LGA    G      70      G      70         15.487
LGA    R      71      R      71         10.916
LGA    V      72      V      72          8.239
LGA    R      73      R      73          7.738
LGA    L      74      L      74          6.809
LGA    G      75      G      75         10.014
LGA    I      76      I      76         10.231
LGA    G      77      G      77         11.441
LGA    P      78      P      78         15.004
LGA    T      79      T      79         21.618
LGA    R      80      R      80         24.844
LGA    D      81      D      81         24.719
LGA    L      82      L      82         21.448
LGA    V      83      V      83         20.969
LGA    L      84      L      84         19.842
LGA    V      85      V      85         17.411
LGA    E      86      E      86         21.270
LGA    G      87      G      87         17.763
LGA    T      88      T      88         17.292
LGA    A      89      A      89         17.267
LGA    L      90      L      90         19.986
LGA    P      91      P      91         23.503
LGA    L      92      L      92         21.364
LGA    E      93      E      93         25.748
LGA    P      94      P      94         26.035
LGA    A      95      A      95         25.021
LGA    G      96      G      96         22.706
LGA    L      97      L      97         18.654
LGA    P      98      P      98         22.495
LGA    D      99      D      99         22.639
LGA    G     100      G     100         19.308
LGA    V     101      V     101         16.279
LGA    G     102      G     102         11.959
LGA    D     103      D     103          7.232
LGA    T     104      T     104          1.683
LGA    F     105      F     105          3.764
LGA    A     106      A     106          3.105
LGA    E     107      E     107          9.370
LGA    K     108      K     108         14.491
LGA    T     109      T     109         13.856
LGA    G     110      G     110         12.210
LGA    F     111      F     111         11.801
LGA    D     112      D     112         11.637
LGA    P     113      P     113          9.433
LGA    R     114      R     114          6.374
LGA    R     115      R     115          4.401
LGA    L     116      L     116          2.238
LGA    T     117      T     117          2.421
LGA    T     118      T     118          3.432
LGA    S     119      S     119          3.907
LGA    Y     120      Y     120          3.561
LGA    L     121      L     121          2.811
LGA    Y     122      Y     122          2.608
LGA    F     123      F     123          2.846
LGA    R     124      R     124          4.531
LGA    I     125      I     125          2.942
LGA    S     126      S     126          1.456
LGA    P     127      P     127          2.969
LGA    R     128      R     128          2.635
LGA    R     129      R     129          7.003
LGA    V     130      V     130          6.993
LGA    Q     131      Q     131          7.006
LGA    A     132      A     132          9.076
LGA    W     133      W     133         12.593
LGA    R     134      R     134         13.218
LGA    E     135      E     135         13.693
LGA    A     136      A     136         15.233
LGA    N     137      N     137         17.321
LGA    E     138      E     138         10.485
LGA    L     139      L     139         10.180
LGA    S     140      S     140         16.642
LGA    G     141      G     141         15.065
LGA    R     142      R     142         10.814
LGA    E     143      E     143         16.591
LGA    L     144      L     144         18.651
LGA    M     145      M     145         21.977
LGA    R     146      R     146         25.908
LGA    D     147      D     147         27.754
LGA    G     148      G     148         24.932
LGA    E     149      E     149         24.534
LGA    W     150      W     150         24.692
LGA    L     151      L     151         25.117
LGA    V     152      V     152         28.678
LGA    T     153      T     153         27.811
LGA    D     154      D     154         27.796

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     23    2.92    17.370    13.876     0.762

LGA_LOCAL      RMSD =  2.919  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.603  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 16.792  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.657913 * X  +  -0.405248 * Y  +   0.634764 * Z  +   0.299754
  Y_new =  -0.499688 * X  +   0.865512 * Y  +   0.034652 * Z  +  35.863609
  Z_new =  -0.563438 * X  +  -0.294386 * Y  +  -0.771929 * Z  +  18.594780 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.777254    0.364339  [ DEG:  -159.1249     20.8751 ]
  Theta =   0.598542    2.543051  [ DEG:    34.2939    145.7061 ]
  Phi   =  -2.492036    0.649557  [ DEG:  -142.7831     37.2169 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS393_1                                  
REMARK     2: T0370.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS393_1.T0370.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   23   2.92  13.876    16.79
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS393_1
PFRMAT TS
TARGET T0370
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      -3.184  46.821  49.677  1.00 25.00           C
ATOM      2  CA  THR     2      -5.251  43.714  48.830  1.00 25.00           C
ATOM      3  CA  THR     3      -7.048  43.019  45.548  1.00 25.00           C
ATOM      4  CA  PRO     4      -7.591  39.579  44.167  1.00 25.00           C
ATOM      5  CA  PRO     5      -9.720  41.138  41.454  1.00 25.00           C
ATOM      6  CA  ALA     6      -7.379  40.488  38.492  1.00 25.00           C
ATOM      7  CA  ARG     7      -6.351  37.058  39.850  1.00 25.00           C
ATOM      8  CA  THR     8      -9.209  35.406  37.907  1.00 25.00           C
ATOM      9  CA  ALA     9      -8.115  37.214  34.713  1.00 25.00           C
ATOM     10  CA  LYS    10      -4.510  36.043  35.255  1.00 25.00           C
ATOM     11  CA  GLN    11      -5.728  32.445  35.750  1.00 25.00           C
ATOM     12  CA  ARG    12      -7.782  32.671  32.526  1.00 25.00           C
ATOM     13  CA  ILE    13      -4.724  33.994  30.639  1.00 25.00           C
ATOM     14  CA  GLN    14      -2.603  31.113  32.008  1.00 25.00           C
ATOM     15  CA  ASP    15      -5.271  28.595  30.908  1.00 25.00           C
ATOM     16  CA  THR    16      -5.337  30.155  27.411  1.00 25.00           C
ATOM     17  CA  LEU    17      -1.519  29.936  27.214  1.00 25.00           C
ATOM     18  CA  ASN    18      -1.651  26.256  28.269  1.00 25.00           C
ATOM     19  CA  ARG    19      -4.295  25.558  25.589  1.00 25.00           C
ATOM     20  CA  LEU    20      -2.117  27.284  22.954  1.00 25.00           C
ATOM     21  CA  GLU    21       0.899  25.187  24.039  1.00 25.00           C
ATOM     22  CA  LEU    22      -0.780  22.554  21.836  1.00 25.00           C
ATOM     23  CA  ASP    23      -4.594  22.237  21.324  1.00 25.00           C
ATOM     24  CA  VAL    24      -6.413  25.545  20.793  1.00 25.00           C
ATOM     25  CA  ASP    25      -7.599  25.964  17.175  1.00 25.00           C
ATOM     26  CA  ALA    26      -4.516  28.094  16.385  1.00 25.00           C
ATOM     27  CA  TRP    27      -2.245  25.427  17.935  1.00 25.00           C
ATOM     28  CA  VAL    28      -3.964  22.715  15.846  1.00 25.00           C
ATOM     29  CA  SER    29      -3.482  24.816  12.680  1.00 25.00           C
ATOM     30  CA  THR    30       0.222  25.290  13.527  1.00 25.00           C
ATOM     31  CA  ALA    31       1.033  22.263  11.367  1.00 25.00           C
ATOM     32  CA  GLY    32      -2.134  20.732   9.977  1.00 25.00           C
ATOM     33  CA  ALA    33      -5.887  20.864   9.281  1.00 25.00           C
ATOM     34  CA  ASP    34      -8.518  22.351  11.566  1.00 25.00           C
ATOM     35  CA  GLY    35      -9.700  24.559   8.680  1.00 25.00           C
ATOM     36  CA  GLY    36      -7.727  27.353  10.451  1.00 25.00           C
ATOM     37  CA  ALA    37      -5.643  30.221  11.922  1.00 25.00           C
ATOM     38  CA  PRO    38      -4.232  33.765  11.898  1.00 25.00           C
ATOM     39  CA  TYR    39      -2.123  34.267  15.072  1.00 25.00           C
ATOM     40  CA  LEU    40       0.304  36.548  13.236  1.00 25.00           C
ATOM     41  CA  VAL    41       0.894  40.065  14.580  1.00 25.00           C
ATOM     42  CA  PRO    42       0.039  40.562  18.223  1.00 25.00           C
ATOM     43  CA  LEU    43       2.279  39.993  21.192  1.00 25.00           C
ATOM     44  CA  SER    44       5.166  37.535  21.183  1.00 25.00           C
ATOM     45  CA  TYR    45       5.533  33.783  21.110  1.00 25.00           C
ATOM     46  CA  LEU    46       7.513  32.294  24.049  1.00 25.00           C
ATOM     47  CA  TRP    47       9.730  34.852  25.857  1.00 25.00           C
ATOM     48  CA  ASP    48      10.938  35.609  29.385  1.00 25.00           C
ATOM     49  CA  GLY    49       8.415  32.903  30.383  1.00 25.00           C
ATOM     50  CA  GLU    50       5.385  34.078  28.394  1.00 25.00           C
ATOM     51  CA  THR    51       3.024  34.876  25.558  1.00 25.00           C
ATOM     52  CA  PHE    52       0.845  35.243  22.401  1.00 25.00           C
ATOM     53  CA  LEU    53       0.708  35.354  18.607  1.00 25.00           C
ATOM     54  CA  VAL    54       3.543  36.743  16.478  1.00 25.00           C
ATOM     55  CA  ALA    55       5.225  37.825  13.183  1.00 25.00           C
ATOM     56  CA  THR    56       3.394  38.929  10.027  1.00 25.00           C
ATOM     57  CA  PRO    57       0.539  39.474   7.601  1.00 25.00           C
ATOM     58  CA  ALA    58      -0.181  41.075   4.242  1.00 25.00           C
ATOM     59  CA  ALA    59      -2.756  43.279   2.543  1.00 25.00           C
ATOM     60  CA  SER    60      -2.775  40.507  -0.030  1.00 25.00           C
ATOM     61  CA  PRO    61      -6.398  41.059  -1.087  1.00 25.00           C
ATOM     62  CA  THR    62      -7.494  39.327  -4.259  1.00 25.00           C
ATOM     63  CA  GLY    63      -4.789  36.621  -3.824  1.00 25.00           C
ATOM     64  CA  ARG    64      -7.027  34.815  -1.354  1.00 25.00           C
ATOM     65  CA  ASN    65      -3.887  33.367   0.323  1.00 25.00           C
ATOM     66  CA  LEU    66      -1.872  35.949   2.336  1.00 25.00           C
ATOM     67  CA  SER    67       1.084  33.750   1.533  1.00 25.00           C
ATOM     68  CA  GLU    68      -0.427  30.493   2.873  1.00 25.00           C
ATOM     69  CA  THR    69      -2.447  31.759   5.795  1.00 25.00           C
ATOM     70  CA  GLY    70      -0.390  32.727   8.824  1.00 25.00           C
ATOM     71  CA  ARG    71       0.371  30.590  11.897  1.00 25.00           C
ATOM     72  CA  VAL    72       2.720  32.129  14.511  1.00 25.00           C
ATOM     73  CA  ARG    73       6.483  32.807  14.719  1.00 25.00           C
ATOM     74  CA  LEU    74       8.575  34.844  17.163  1.00 25.00           C
ATOM     75  CA  GLY    75       8.231  38.647  17.287  1.00 25.00           C
ATOM     76  CA  ILE    76       5.800  41.609  16.814  1.00 25.00           C
ATOM     77  CA  GLY    77       4.824  42.907  13.356  1.00 25.00           C
ATOM     78  CA  PRO    78       3.602  46.082  11.614  1.00 25.00           C
ATOM     79  CA  THR    79      -0.121  46.755  11.216  1.00 25.00           C
ATOM     80  CA  ARG    80      -0.621  44.975  14.540  1.00 25.00           C
ATOM     81  CA  ASP    81      -3.632  43.241  13.069  1.00 25.00           C
ATOM     82  CA  LEU    82      -3.152  39.887  11.439  1.00 25.00           C
ATOM     83  CA  VAL    83      -4.512  38.776  14.868  1.00 25.00           C
ATOM     84  CA  LEU    84      -4.174  37.215  18.274  1.00 25.00           C
ATOM     85  CA  VAL    85      -4.531  34.970  21.319  1.00 25.00           C
ATOM     86  CA  GLU    86      -6.258  38.041  22.791  1.00 25.00           C
ATOM     87  CA  GLY    87      -2.780  39.403  22.855  1.00 25.00           C
ATOM     88  CA  THR    88      -0.691  39.151  25.994  1.00 25.00           C
ATOM     89  CA  ALA    89       2.585  40.871  26.776  1.00 25.00           C
ATOM     90  CA  LEU    90       6.111  42.219  26.104  1.00 25.00           C
ATOM     91  CA  PRO    91       7.668  44.827  28.375  1.00 25.00           C
ATOM     92  CA  LEU    92       4.563  46.982  28.813  1.00 25.00           C
ATOM     93  CA  GLU    93       5.446  50.505  29.742  1.00 25.00           C
ATOM     94  CA  PRO    94       7.000  53.734  28.617  1.00 25.00           C
ATOM     95  CA  ALA    95       4.384  53.727  25.859  1.00 25.00           C
ATOM     96  CA  GLY    96       1.118  52.519  24.332  1.00 25.00           C
ATOM     97  CA  LEU    97      -0.224  51.123  21.047  1.00 25.00           C
ATOM     98  CA  PRO    98       1.747  53.009  18.478  1.00 25.00           C
ATOM     99  CA  ASP    99       5.356  53.877  19.268  1.00 25.00           C
ATOM    100  CA  GLY   100       7.971  51.134  18.636  1.00 25.00           C
ATOM    101  CA  VAL   101       5.126  48.936  17.267  1.00 25.00           C
ATOM    102  CA  GLY   102       3.276  46.636  19.662  1.00 25.00           C
ATOM    103  CA  ASP   103       2.120  46.460  23.278  1.00 25.00           C
ATOM    104  CA  THR   104      -0.897  44.260  23.837  1.00 25.00           C
ATOM    105  CA  PHE   105      -2.448  44.683  20.399  1.00 25.00           C
ATOM    106  CA  ALA   106      -5.025  42.440  18.730  1.00 25.00           C
ATOM    107  CA  GLU   107      -8.707  43.273  18.384  1.00 25.00           C
ATOM    108  CA  LYS   108     -12.174  44.601  17.607  1.00 25.00           C
ATOM    109  CA  THR   109     -12.463  48.417  18.014  1.00 25.00           C
ATOM    110  CA  GLY   110     -12.396  48.322  21.815  1.00 25.00           C
ATOM    111  CA  PHE   111     -14.912  45.511  22.373  1.00 25.00           C
ATOM    112  CA  ASP   112     -18.341  44.057  23.047  1.00 25.00           C
ATOM    113  CA  PRO   113     -17.084  40.490  23.656  1.00 25.00           C
ATOM    114  CA  ARG   114     -17.853  38.464  20.498  1.00 25.00           C
ATOM    115  CA  ARG   115     -17.050  41.509  18.320  1.00 25.00           C
ATOM    116  CA  LEU   116     -15.938  41.245  14.690  1.00 25.00           C
ATOM    117  CA  THR   117     -17.818  37.970  14.323  1.00 25.00           C
ATOM    118  CA  THR   118     -15.251  35.511  15.486  1.00 25.00           C
ATOM    119  CA  SER   119     -11.571  35.963  16.272  1.00 25.00           C
ATOM    120  CA  TYR   120      -8.114  35.177  14.999  1.00 25.00           C
ATOM    121  CA  LEU   121      -6.866  32.529  17.523  1.00 25.00           C
ATOM    122  CA  TYR   122      -4.903  30.741  20.202  1.00 25.00           C
ATOM    123  CA  PHE   123      -1.219  30.702  19.512  1.00 25.00           C
ATOM    124  CA  ARG   124       2.281  29.598  20.672  1.00 25.00           C
ATOM    125  CA  ILE   125       2.759  29.906  24.447  1.00 25.00           C
ATOM    126  CA  SER   126       4.818  27.027  25.951  1.00 25.00           C
ATOM    127  CA  PRO   127       6.305  23.699  25.024  1.00 25.00           C
ATOM    128  CA  ARG   128       7.460  22.215  21.688  1.00 25.00           C
ATOM    129  CA  ARG   129       5.804  25.108  19.801  1.00 25.00           C
ATOM    130  CA  VAL   130       7.537  27.633  22.101  1.00 25.00           C
ATOM    131  CA  GLN   131      10.903  25.910  21.498  1.00 25.00           C
ATOM    132  CA  ALA   132      10.314  26.029  17.715  1.00 25.00           C
ATOM    133  CA  TRP   133       9.465  29.757  17.941  1.00 25.00           C
ATOM    134  CA  ARG   134      12.661  30.388  19.952  1.00 25.00           C
ATOM    135  CA  GLU   135      14.713  28.488  17.336  1.00 25.00           C
ATOM    136  CA  ALA   136      13.116  30.562  14.541  1.00 25.00           C
ATOM    137  CA  ASN   137      13.932  33.790  16.436  1.00 25.00           C
ATOM    138  CA  GLU   138      17.558  32.640  16.881  1.00 25.00           C
ATOM    139  CA  LEU   139      17.796  31.858  13.140  1.00 25.00           C
ATOM    140  CA  SER   140      16.400  35.325  12.301  1.00 25.00           C
ATOM    141  CA  GLY   141      18.960  36.949  14.643  1.00 25.00           C
ATOM    142  CA  ARG   142      21.779  34.965  12.975  1.00 25.00           C
ATOM    143  CA  GLU   143      20.552  36.075   9.521  1.00 25.00           C
ATOM    144  CA  LEU   144      20.471  39.721  10.696  1.00 25.00           C
ATOM    145  CA  MET   145      16.980  39.993   9.334  1.00 25.00           C
ATOM    146  CA  ARG   146      16.620  38.244   5.929  1.00 25.00           C
ATOM    147  CA  ASP   147      15.623  35.002   4.189  1.00 25.00           C
ATOM    148  CA  GLY   148      12.247  33.607   5.254  1.00 25.00           C
ATOM    149  CA  GLU   149       9.744  34.748   7.858  1.00 25.00           C
ATOM    150  CA  TRP   150       5.970  35.262   7.798  1.00 25.00           C
ATOM    151  CA  LEU   151       4.749  32.145   9.512  1.00 25.00           C
ATOM    152  CA  VAL   152       3.204  28.731   9.506  1.00 25.00           C
ATOM    153  CA  THR   153       5.570  26.911  11.854  1.00 25.00           C
ATOM    154  CA  ASP   154       8.135  24.191  12.727  1.00 25.00           C
TER
END
