
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0370TS393_2
# Molecule2: number of CA atoms  154 ( 1177),  selected  154 , name T0370.pdb
# PARAMETERS: T0370TS393_2.T0370.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          4.94    21.76
  LONGEST_CONTINUOUS_SEGMENT:    25         3 - 27          4.97    21.76
  LCS_AVERAGE:     12.66

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         7 - 21          1.84    31.97
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          1.77    30.89
  LCS_AVERAGE:      4.87

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         8 - 21          0.35    30.76
  LCS_AVERAGE:      3.20

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     M       1     M       1      4    7   21     3    3    5    6    6    8   10   10   12   14   15   18   23   27   30   31   35   45   46   50 
LCS_GDT     T       2     T       2      4    7   25     3    3    5    6    6    8   10   12   15   20   21   22   29   30   35   40   42   45   51   53 
LCS_GDT     T       3     T       3      4    7   25     3    4    5    6    6    8   11   12   16   20   21   23   29   30   35   40   43   46   51   54 
LCS_GDT     P       4     P       4      4    7   25     3    3    5    7    7    8   11   13   16   20   21   23   26   29   35   40   43   46   51   54 
LCS_GDT     P       5     P       5      3    7   25     3    4    4    7    7    8   11   13   16   20   21   23   29   30   35   40   43   46   51   54 
LCS_GDT     A       6     A       6      3    7   25     3    4    4    7    7    8   11   13   16   20   21   24   29   31   35   40   43   46   51   54 
LCS_GDT     R       7     R       7      3   15   25     3    4    5    7    7    8   11   14   16   20   21   24   29   30   35   40   43   46   51   54 
LCS_GDT     T       8     T       8     14   15   25     8   14   14   14   14   14   14   15   18   25   27   30   33   35   37   40   44   48   54   57 
LCS_GDT     A       9     A       9     14   15   25    13   14   14   14   14   14   22   22   24   25   27   30   33   35   37   41   46   49   54   57 
LCS_GDT     K      10     K      10     14   15   25    13   14   14   14   14   14   14   14   15   18   22   25   29   34   37   41   46   48   54   57 
LCS_GDT     Q      11     Q      11     14   15   25    13   14   14   14   14   14   14   14   18   22   26   30   33   35   37   41   46   49   54   57 
LCS_GDT     R      12     R      12     14   15   25    13   14   14   14   14   15   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     I      13     I      13     14   15   25    13   14   14   14   14   14   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     Q      14     Q      14     14   15   25    13   14   14   14   14   14   14   16   24   25   27   30   33   35   37   41   46   49   54   57 
LCS_GDT     D      15     D      15     14   15   25    13   14   14   14   14   15   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     T      16     T      16     14   15   25    13   14   14   14   14   14   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     L      17     L      17     14   15   25    13   14   14   14   14   14   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     N      18     N      18     14   15   25    13   14   14   14   14   15   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     R      19     R      19     14   15   25    13   14   14   14   14   14   14   16   21   23   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     L      20     L      20     14   15   25    13   14   14   14   14   14   14   14   16   20   24   30   32   35   37   40   44   48   52   57 
LCS_GDT     E      21     E      21     14   15   25    13   14   14   14   14   15   22   22   24   25   27   30   33   35   37   40   43   46   52   57 
LCS_GDT     L      22     L      22      4   15   25     3    3    4    6    6   15   22   22   24   25   27   30   33   35   37   40   43   46   51   57 
LCS_GDT     D      23     D      23      4    6   25     3    3    5    6   12   15   22   22   24   25   27   30   33   35   37   40   43   46   51   55 
LCS_GDT     V      24     V      24      3    6   25     3    3    4    6    7    9   11   16   18   21   23   25   29   35   37   40   43   46   51   55 
LCS_GDT     D      25     D      25      3    6   25     3    3    4    6    6   10   13   18   18   22   25   30   33   35   37   40   43   46   51   54 
LCS_GDT     A      26     A      26      3    5   25     3    5    6   10   12   15   22   22   24   25   27   30   33   35   37   40   43   48   54   57 
LCS_GDT     W      27     W      27      3    3   25     3    4    6    6    8   12   13   13   17   19   23   25   28   33   37   42   47   49   54   57 
LCS_GDT     V      28     V      28      3    3   22     3    3    3    3    4    6    9   12   15   17   22   24   28   33   37   41   44   48   54   57 
LCS_GDT     S      29     S      29      3    3   22     0    3    4    4    5    6   10   12   15   18   22   24   28   33   37   42   47   49   54   59 
LCS_GDT     T      30     T      30      3    4   17     0    3    3    7   10   10   12   13   15   18   22   24   27   33   37   42   47   52   58   65 
LCS_GDT     A      31     A      31      3    6   17     3    3    4    7   10   10   12   13   15   16   20   22   26   29   32   37   43   52   58   64 
LCS_GDT     G      32     G      32      3    6   17     3    3    4    6   10   10   12   13   15   15   20   21   25   29   32   36   43   52   58   64 
LCS_GDT     A      33     A      33      3    6   17     3    3    4    5    6    7    9   12   13   17   21   23   25   30   34   39   48   53   58   65 
LCS_GDT     D      34     D      34      3    7   17     3    3    4    5    6    7   10   12   18   22   23   25   27   30   34   38   48   53   58   65 
LCS_GDT     G      35     G      35      3    7   17     1    3    4    5    6   10   15   17   18   22   23   25   27   30   37   41   48   53   58   65 
LCS_GDT     G      36     G      36      4    7   17     4    4    4    5    6    9   12   17   18   22   23   25   27   29   33   40   47   52   58   65 
LCS_GDT     A      37     A      37      4    7   17     4    4    4    5    6    7   10   12   16   20   23   25   27   29   32   40   47   52   58   65 
LCS_GDT     P      38     P      38      4    7   17     4    4    4    5    6    9   15   17   18   22   23   25   27   29   33   40   47   53   58   65 
LCS_GDT     Y      39     Y      39      4    7   17     4    4    5    5    6    9   15   17   18   22   23   25   27   29   33   41   47   52   58   65 
LCS_GDT     L      40     L      40      4    7   17     3    4    5    5    6    9    9   11   12   20   22   24   27   32   35   42   47   52   58   65 
LCS_GDT     V      41     V      41      4    5   17     3    4    5    5    6    9    9   10   15   18   20   24   27   32   37   42   47   49   54   57 
LCS_GDT     P      42     P      42      4    5   17     3    4    5    5    6    9   12   12   15   18   22   24   27   32   37   42   47   49   54   57 
LCS_GDT     L      43     L      43      4    7   18     3    3    5    8   10   11   13   15   17   18   22   24   27   33   37   42   47   49   54   59 
LCS_GDT     S      44     S      44      5    7   18     3    5    6    9   12   12   13   15   17   18   22   24   27   32   37   42   47   49   54   59 
LCS_GDT     Y      45     Y      45      5    7   18     4    5    5    8   12   12   13   15   17   18   22   24   27   33   37   42   47   52   58   65 
LCS_GDT     L      46     L      46      5    7   18     4    5    5    7    7    8   10   13   15   18   20   24   27   33   37   42   45   52   58   65 
LCS_GDT     W      47     W      47      5    7   18     4    5    5    7    7    7   10   12   14   18   19   22   26   32   36   42   48   53   58   65 
LCS_GDT     D      48     D      48      5    7   18     4    5    5    7    7    7   10   12   13   15   18   23   26   30   32   39   43   50   58   64 
LCS_GDT     G      49     G      49      4    7   18     3    3    5    7    7    9   12   13   15   18   21   24   28   31   33   39   44   50   58   64 
LCS_GDT     E      50     E      50      5    7   18     3    4    6    6   10   12   12   15   17   21   23   25   28   31   33   39   44   48   58   64 
LCS_GDT     T      51     T      51      5    7   18     3    4    6    8   10   12   13   15   17   21   23   28   32   35   37   40   47   52   58   65 
LCS_GDT     F      52     F      52      5    7   19     3    3    6    7   10   11   13   17   19   21   23   29   33   35   40   44   48   53   58   65 
LCS_GDT     L      53     L      53      5    7   19     3    4    7   10   12   15   22   22   24   25   27   30   33   35   40   44   48   53   58   65 
LCS_GDT     V      54     V      54      5    7   19     3    4    6   10   12   15   22   22   24   25   27   30   33   35   40   44   48   53   58   65 
LCS_GDT     A      55     A      55      3    7   19     3    3    5    6   10   15   22   22   24   25   27   30   33   35   37   41   44   48   57   62 
LCS_GDT     T      56     T      56      3    7   19     3    3    4    5   10   15   22   22   24   25   27   30   33   35   37   42   47   49   54   60 
LCS_GDT     P      57     P      57      4    7   19     3    4    4    5    9   11   13   18   22   24   27   30   33   35   37   42   47   49   54   60 
LCS_GDT     A      58     A      58      4    7   19     3    4    5   10   12   15   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     A      59     A      59      4    7   20     3    4    5   10   12   15   22   22   24   25   27   30   33   35   37   42   47   49   54   57 
LCS_GDT     S      60     S      60      4    7   20     3    4    6   10   12   15   22   22   24   25   27   30   33   35   37   44   48   53   58   65 
LCS_GDT     P      61     P      61      4    6   20     3    3    4    5    7    9   12   14   18   25   27   30   33   35   40   44   48   53   58   65 
LCS_GDT     T      62     T      62      4    6   20     3    3    4    5    6    7    8    9   12   13   15   18   20   25   37   40   42   46   51   60 
LCS_GDT     G      63     G      63      4    5   20     3    3    4    5    5    5    6    8   12   14   18   23   30   34   37   40   42   49   57   60 
LCS_GDT     R      64     R      64      4    5   20     3    3    4    5    7   10   22   22   24   25   27   30   33   35   40   44   48   51   58   65 
LCS_GDT     N      65     N      65      3    5   20     4    5    6   10   12   15   22   22   24   25   27   30   33   35   40   44   48   51   58   64 
LCS_GDT     L      66     L      66      3    5   20     4    4    5    6    9   14   22   22   24   25   27   30   33   35   40   44   48   53   58   65 
LCS_GDT     S      67     S      67      3    5   20     4    4    4    5    9    9   15   17   18   22   24   27   31   34   40   44   48   51   58   64 
LCS_GDT     E      68     E      68      3    7   20     3    3    6    7    9   12   15   17   18   22   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     T      69     T      69      3    7   20     3    3    4    5    7   12   15   17   18   22   23   26   29   34   40   44   48   53   58   65 
LCS_GDT     G      70     G      70      3    7   20     3    3    4    6    9   12   15   17   18   22   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     R      71     R      71      4    7   20     3    4    6    7    9   12   15   17   18   22   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     V      72     V      72      4    8   20     3    4    5    6    7   12   15   17   18   22   23   25   29   34   38   44   48   53   58   65 
LCS_GDT     R      73     R      73      6    8   20     4    4    6    7    7   12   15   17   18   22   23   25   27   29   35   42   47   53   58   65 
LCS_GDT     L      74     L      74      6    8   20     4    4    6    7    9   12   15   17   18   22   23   25   27   31   35   40   48   53   58   65 
LCS_GDT     G      75     G      75      6    8   20     4    4    6    7    7   12   15   17   18   22   23   25   27   31   34   40   44   51   58   65 
LCS_GDT     I      76     I      76      6    8   20     4    4    6    7    9   12   15   17   18   22   24   26   31   34   40   44   48   53   58   65 
LCS_GDT     G      77     G      77      6    8   20     3    4    6    7    7   10   13   15   18   22   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     P      78     P      78      6    8   20     3    4    6    7    7    9   13   15   18   22   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     T      79     T      79      4    8   17     3    4    5    7    7    9   10   11   13   15   16   23   25   29   30   33   35   40   48   53 
LCS_GDT     R      80     R      80      3    6   17     3    3    4    6    6    7    8   11   13   15   15   17   18   22   25   33   35   36   41   45 
LCS_GDT     D      81     D      81      3    6   17     3    3    5    6    6    7    9   11   13   15   15   17   25   26   26   28   35   36   37   41 
LCS_GDT     L      82     L      82      4    6   17     3    3    5    6    6    7   10   11   13   15   15   19   25   26   27   33   35   39   41   47 
LCS_GDT     V      83     V      83      4    6   20     3    3    5    6    6    7   10   11   13   15   17   21   26   29   30   33   35   39   43   52 
LCS_GDT     L      84     L      84      4    6   20     3    3    5    6    6    7   10   13   16   20   21   23   26   30   33   40   43   46   51   54 
LCS_GDT     V      85     V      85      4    7   20     3    3    5    6    7    9   12   13   16   20   26   30   33   35   37   42   47   49   54   57 
LCS_GDT     E      86     E      86      5    9   20     3    4    7    8    9   11   12   13   18   22   26   30   33   35   37   42   47   49   54   57 
LCS_GDT     G      87     G      87      6    9   20     3    5    7    8    9   11   15   17   18   22   23   25   32   35   36   42   47   49   54   62 
LCS_GDT     T      88     T      88      6    9   20     2    3    7    8    9   11   12   13   14   16   17   18   23   27   31   34   40   50   58   65 
LCS_GDT     A      89     A      89      6    9   22     4    5    7    8    9   11   12   13   14   18   23   25   27   29   32   35   43   52   58   64 
LCS_GDT     L      90     L      90      6    9   22     4    5    7    8    9   11   12   14   17   21   23   25   27   29   31   35   40   48   56   59 
LCS_GDT     P      91     P      91      6    9   22     4    5    7    8    9   11   12   14   17   21   23   25   27   29   31   34   38   42   47   52 
LCS_GDT     L      92     L      92      6    9   22     4    5    7    8   10   12   13   15   17   19   23   25   27   28   30   33   38   42   47   50 
LCS_GDT     E      93     E      93      5    9   22     3    5    7    9   12   12   13   15   17   19   22   23   27   28   30   32   33   36   41   46 
LCS_GDT     P      94     P      94      4    9   22     3    4    4    8   12   12   13   14   17   19   22   23   27   28   30   32   37   37   41   46 
LCS_GDT     A      95     A      95      4    5   22     3    4    6    9   12   12   13   15   17   21   23   25   27   28   30   33   38   42   47   50 
LCS_GDT     G      96     G      96      3    5   22     3    3    3    5    5    9   13   14   17   21   23   25   27   29   31   34   38   42   47   52 
LCS_GDT     L      97     L      97      3    6   22     3    3    5    9   12   12   13   15   17   21   23   25   27   29   31   35   40   42   50   57 
LCS_GDT     P      98     P      98      3    6   22     3    3    6    9   12   12   13   15   17   21   23   25   27   29   31   35   40   48   52   57 
LCS_GDT     D      99     D      99      4    6   22     3    4    6    9   12   12   13   15   17   21   23   25   27   32   35   42   45   49   54   57 
LCS_GDT     G     100     G     100      4    6   22     3    4    5    9   12   12   13   15   17   21   23   25   27   32   37   42   47   52   58   65 
LCS_GDT     V     101     V     101      4    6   22     3    4    5    9   12   12   13   15   17   21   23   25   28   32   37   42   48   53   58   65 
LCS_GDT     G     102     G     102      4    6   22     3    3    5    9   12   12   13   15   17   21   23   25   28   32   36   42   48   53   58   65 
LCS_GDT     D     103     D     103      4    4   22     3    3    4    5    6    6    9   15   15   18   20   23   25   29   35   40   44   52   58   65 
LCS_GDT     T     104     T     104      4    4   22     3    3    4    7    9    9   11   15   18   19   22   25   28   33   38   44   48   53   58   65 
LCS_GDT     F     105     F     105      4    4   22     1    3    6    9   12   12   13   15   18   21   23   27   31   34   40   44   48   53   58   65 
LCS_GDT     A     106     A     106      3    4   22     0    3    5    6    8   11   13   15   18   21   23   27   31   34   40   44   48   53   58   65 
LCS_GDT     E     107     E     107      3    4   22     3    3    5    6   10   12   13   15   17   21   23   25   27   32   40   44   48   53   58   65 
LCS_GDT     K     108     K     108      3    4   22     3    3    3    6    7    7   10   13   16   21   23   25   28   33   40   43   48   53   58   65 
LCS_GDT     T     109     T     109      3    4   22     3    3    4    6    7    9   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     G     110     G     110      3    6   22     3    3    5    7    9   12   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     F     111     F     111      4    6   17     4    4    6    7    9   12   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     D     112     D     112      4    6   17     4    4    6    7    9   12   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     P     113     P     113      4    6   17     4    4    4    6    7   10   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     R     114     R     114      4    6   17     4    4    6    7    9   10   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     R     115     R     115      4    6   17     3    3    4    5    5   10   11   14   18   19   23   27   31   34   40   44   48   53   58   65 
LCS_GDT     L     116     L     116      4    6   17     3    3    4    6    8   10   11   14   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     T     117     T     117      4    6   17     3    3    4    6    6    7    7    9   13   18   20   22   27   33   38   44   48   53   58   65 
LCS_GDT     T     118     T     118      3    6   17     3    3    3    6    7    7    8   10   13   18   20   22   26   32   37   44   48   53   58   65 
LCS_GDT     S     119     S     119      3    6   17     3    3    4    6    7    7    8   10   11   13   17   19   25   30   33   39   44   52   58   65 
LCS_GDT     Y     120     Y     120      4    9   17     3    4    6    8    9   11   12   15   15   18   21   25   29   34   40   44   48   53   58   65 
LCS_GDT     L     121     L     121      4    9   17     3    4    7    8   10   11   12   15   18   19   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     Y     122     Y     122      4    9   17     3    4    5    8    9   11   12   15   18   19   22   27   31   34   40   44   48   53   58   65 
LCS_GDT     F     123     F     123      4    9   17     3    5    7   10   12   15   22   22   24   25   27   30   33   35   37   43   47   50   57   63 
LCS_GDT     R     124     R     124      4    9   17     3    4    7    8    9   11   12   17   24   25   27   30   33   35   37   41   44   48   54   57 
LCS_GDT     I     125     I     125      4    9   17     3    3    7    8    9   11   12   15   17   20   21   28   32   35   36   39   43   46   52   56 
LCS_GDT     S     126     S     126      4    9   17     3    3    7    8    9   11   12   12   13   17   17   22   27   29   32   36   38   46   51   54 
LCS_GDT     P     127     P     127      4    9   17     3    3    7    8    9   11   12   15   15   17   21   23   27   30   33   36   40   42   46   48 
LCS_GDT     R     128     R     128      3    9   14     3    3    4    5    8   11   12   12   13   14   17   21   26   29   32   36   38   41   46   48 
LCS_GDT     R     129     R     129      3    4   14     4    4    4    4    5    5    9   11   12   13   15   18   22   26   26   33   36   40   46   48 
LCS_GDT     V     130     V     130      3    4   14     0    3    5    7    7    8    9   12   13   14   17   25   28   31   33   35   40   47   50   58 
LCS_GDT     Q     131     Q     131      3    3   14     0    3    3    5    7    8    8    9   13   18   21   25   28   31   33   39   44   49   54   60 
LCS_GDT     A     132     A     132      3    3   14     0    3    5    6    7    9    9   11   12   15   18   22   28   33   36   40   47   52   58   65 
LCS_GDT     W     133     W     133      3    4   14     0    3    4    5    7    8    9   10   13   14   18   19   24   27   30   33   37   48   54   63 
LCS_GDT     R     134     R     134      3    8   14     1    3    4    5    5    6    9   10   11   13   18   19   24   27   30   36   41   49   58   65 
LCS_GDT     E     135     E     135      6    9   14     4    5    7    8    9    9    9   10   11   14   18   22   24   27   30   37   41   49   58   65 
LCS_GDT     A     136     A     136      6    9   14     4    5    7    8    9    9    9   10   10   12   18   22   23   25   27   31   32   39   43   50 
LCS_GDT     N     137     N     137      6    9   14     4    5    7    8    9    9    9   10   10   11   12   13   19   24   27   31   32   35   38   43 
LCS_GDT     E     138     E     138      6    9   16     4    5    7    8    9    9    9   10   13   14   18   22   25   27   33   39   48   53   58   65 
LCS_GDT     L     139     L     139      6    9   16     4    5    7    8    9    9    9   15   18   20   23   26   29   34   40   44   48   53   58   65 
LCS_GDT     S     140     S     140      6    9   16     4    5    7    8    9    9    9   10   10   11   14   22   24   27   30   37   43   49   58   65 
LCS_GDT     G     141     G     141      5    9   16     3    5    5    8    9    9    9   10   14   15   18   24   28   34   40   44   48   53   58   65 
LCS_GDT     R     142     R     142      5    9   16     4    5    7    8    9   10   11   14   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     E     143     E     143      3    9   16     3    3    4    6   10   10   12   14   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     L     144     L     144      3    7   16     3    3    4    4    6    7    9   14   18   19   20   26   31   34   40   44   48   53   58   65 
LCS_GDT     M     145     M     145      3    5   16     3    3    4    5    8   10   11   14   18   21   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     R     146     R     146      4    6   16     3    3    4    6    8   10   11   14   18   21   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     D     147     D     147      4    6   16     3    3    4    6    8    9   10   14   17   21   23   25   27   34   38   44   48   53   58   65 
LCS_GDT     G     148     G     148      4    6   16     4    4    5    6    8   10   11   14   18   19   23   26   31   34   40   44   48   53   58   65 
LCS_GDT     E     149     E     149      4    6   16     4    4    5    5    7   10   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     W     150     W     150      4    6   16     4    4    5    5    7    9   13   15   18   20   24   27   31   34   40   44   48   53   58   65 
LCS_GDT     L     151     L     151      4    6   16     4    4    5    5    6    9    9   10   11   12   15   15   21   23   27   32   37   44   48   53 
LCS_GDT     V     152     V     152      4    6   16     1    3    5    5    6    9    9   10   11   12   15   15   15   17   25   28   30   32   36   37 
LCS_GDT     T     153     T     153      3    6   16     0    3    3    4    6    9    9   10   11   12   15   15   15   16   19   21   30   34   36   37 
LCS_GDT     D     154     D     154      3    6   15     1    3    3    4    6    9    9   10   11   12   15   15   15   15   19   25   29   34   36   37 
LCS_AVERAGE  LCS_A:   6.91  (   3.20    4.87   12.66 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     14     14     14     14     15     22     22     24     25     27     30     33     35     40     44     48     53     58     65 
GDT PERCENT_CA   8.44   9.09   9.09   9.09   9.09   9.74  14.29  14.29  15.58  16.23  17.53  19.48  21.43  22.73  25.97  28.57  31.17  34.42  37.66  42.21
GDT RMS_LOCAL    0.23   0.35   0.35   0.35   0.35   2.01   2.64   2.64   2.92   3.04   3.30   3.61   3.95   4.18   5.55   5.88   6.19   6.91   6.98   7.55
GDT RMS_ALL_CA  30.50  30.76  30.76  30.76  30.76  21.39  21.41  21.41  21.45  21.41  21.44  21.35  21.39  21.44  18.60  18.68  18.81  18.79  18.97  18.72

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         29.780
LGA    T       2      T       2         24.581
LGA    T       3      T       3         19.066
LGA    P       4      P       4         18.909
LGA    P       5      P       5         17.223
LGA    A       6      A       6         13.790
LGA    R       7      R       7         13.169
LGA    T       8      T       8          6.944
LGA    A       9      A       9          2.992
LGA    K      10      K      10          7.388
LGA    Q      11      Q      11          6.866
LGA    R      12      R      12          2.363
LGA    I      13      I      13          3.265
LGA    Q      14      Q      14          4.686
LGA    D      15      D      15          3.477
LGA    T      16      T      16          3.219
LGA    L      17      L      17          3.395
LGA    N      18      N      18          1.689
LGA    R      19      R      19          5.368
LGA    L      20      L      20          6.539
LGA    E      21      E      21          3.347
LGA    L      22      L      22          3.042
LGA    D      23      D      23          3.276
LGA    V      24      V      24          7.517
LGA    D      25      D      25          6.742
LGA    A      26      A      26          0.941
LGA    W      27      W      27          7.760
LGA    V      28      V      28         10.831
LGA    S      29      S      29         11.230
LGA    T      30      T      30         16.553
LGA    A      31      A      31         23.051
LGA    G      32      G      32         25.233
LGA    A      33      A      33         25.677
LGA    D      34      D      34         26.321
LGA    G      35      G      35         26.772
LGA    G      36      G      36         25.659
LGA    A      37      A      37         22.023
LGA    P      38      P      38         21.790
LGA    Y      39      Y      39         19.326
LGA    L      40      L      40         17.990
LGA    V      41      V      41         18.417
LGA    P      42      P      42         17.633
LGA    L      43      L      43         12.075
LGA    S      44      S      44         11.488
LGA    Y      45      Y      45         10.724
LGA    L      46      L      46          8.990
LGA    W      47      W      47         11.642
LGA    D      48      D      48         12.309
LGA    G      49      G      49         16.281
LGA    E      50      E      50         15.003
LGA    T      51      T      51         10.778
LGA    F      52      F      52          7.404
LGA    L      53      L      53          2.158
LGA    V      54      V      54          1.529
LGA    A      55      A      55          2.864
LGA    T      56      T      56          2.850
LGA    P      57      P      57          4.680
LGA    A      58      A      58          2.095
LGA    A      59      A      59          2.252
LGA    S      60      S      60          2.149
LGA    P      61      P      61          5.666
LGA    T      62      T      62          7.877
LGA    G      63      G      63          8.325
LGA    R      64      R      64          3.470
LGA    N      65      N      65          0.634
LGA    L      66      L      66          3.068
LGA    S      67      S      67          9.034
LGA    E      68      E      68         11.651
LGA    T      69      T      69         11.725
LGA    G      70      G      70         12.056
LGA    R      71      R      71         14.412
LGA    V      72      V      72         12.282
LGA    R      73      R      73         12.704
LGA    L      74      L      74         13.932
LGA    G      75      G      75         18.819
LGA    I      76      I      76         20.850
LGA    G      77      G      77         25.509
LGA    P      78      P      78         32.305
LGA    T      79      T      79         35.293
LGA    R      80      R      80         32.315
LGA    D      81      D      81         26.524
LGA    L      82      L      82         21.682
LGA    V      83      V      83         15.268
LGA    L      84      L      84         11.037
LGA    V      85      V      85          6.039
LGA    E      86      E      86          6.664
LGA    G      87      G      87          8.443
LGA    T      88      T      88         13.960
LGA    A      89      A      89         17.702
LGA    L      90      L      90         21.920
LGA    P      91      P      91         24.694
LGA    L      92      L      92         24.123
LGA    E      93      E      93         27.797
LGA    P      94      P      94         29.230
LGA    A      95      A      95         27.901
LGA    G      96      G      96         22.450
LGA    L      97      L      97         16.367
LGA    P      98      P      98         13.490
LGA    D      99      D      99         15.013
LGA    G     100      G     100         17.398
LGA    V     101      V     101         14.111
LGA    G     102      G     102         19.926
LGA    D     103      D     103         18.901
LGA    T     104      T     104         12.829
LGA    F     105      F     105         13.831
LGA    A     106      A     106         19.165
LGA    E     107      E     107         23.188
LGA    K     108      K     108         24.767
LGA    T     109      T     109         26.199
LGA    G     110      G     110         32.290
LGA    F     111      F     111         32.344
LGA    D     112      D     112         31.241
LGA    P     113      P     113         28.719
LGA    R     114      R     114         32.279
LGA    R     115      R     115         32.901
LGA    L     116      L     116         30.783
LGA    T     117      T     117         30.425
LGA    T     118      T     118         25.879
LGA    S     119      S     119         21.368
LGA    Y     120      Y     120         18.834
LGA    L     121      L     121         12.615
LGA    Y     122      Y     122          7.221
LGA    F     123      F     123          0.717
LGA    R     124      R     124          5.900
LGA    I     125      I     125          9.293
LGA    S     126      S     126         15.470
LGA    P     127      P     127         22.135
LGA    R     128      R     128         24.577
LGA    R     129      R     129         24.131
LGA    V     130      V     130         26.298
LGA    Q     131      Q     131         31.981
LGA    A     132      A     132         30.058
LGA    W     133      W     133         30.830
LGA    R     134      R     134         35.178
LGA    E     135      E     135         39.690
LGA    A     136      A     136         38.793
LGA    N     137      N     137         39.947
LGA    E     138      E     138         40.298
LGA    L     139      L     139         40.021
LGA    S     140      S     140         39.431
LGA    G     141      G     141         40.329
LGA    R     142      R     142         39.505
LGA    E     143      E     143         37.109
LGA    L     144      L     144         35.146
LGA    M     145      M     145         31.861
LGA    R     146      R     146         35.585
LGA    D     147      D     147         35.959
LGA    G     148      G     148         29.660
LGA    E     149      E     149         26.528
LGA    W     150      W     150         21.048
LGA    L     151      L     151         24.530
LGA    V     152      V     152         27.969
LGA    T     153      T     153         34.449
LGA    D     154      D     154         41.375

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     22    2.64    15.260    12.058     0.802

LGA_LOCAL      RMSD =  2.645  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.407  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 17.601  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.235200 * X  +   0.424044 * Y  +  -0.874567 * Z  +   3.770217
  Y_new =  -0.926035 * X  +   0.175520 * Y  +   0.334144 * Z  +  34.697983
  Z_new =   0.295196 * X  +   0.888470 * Y  +   0.351398 * Z  +  22.547909 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.194168   -1.947425  [ DEG:    68.4208   -111.5792 ]
  Theta =  -0.299661   -2.841932  [ DEG:   -17.1693   -162.8307 ]
  Phi   =  -1.819523    1.322070  [ DEG:  -104.2510     75.7490 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS393_2                                  
REMARK     2: T0370.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS393_2.T0370.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   22   2.64  12.058    17.60
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS393_2
PFRMAT TS
TARGET T0370
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      33.537  15.881  20.483  1.00 25.00           C
ATOM      2  CA  THR     2      30.491  18.092  20.909  1.00 25.00           C
ATOM      3  CA  THR     3      28.928  21.381  22.002  1.00 25.00           C
ATOM      4  CA  PRO     4      25.281  20.268  21.890  1.00 25.00           C
ATOM      5  CA  PRO     5      24.982  21.010  25.591  1.00 25.00           C
ATOM      6  CA  ALA     6      21.680  22.731  24.819  1.00 25.00           C
ATOM      7  CA  ARG     7      20.125  24.665  27.735  1.00 25.00           C
ATOM      8  CA  THR     8      22.809  27.378  27.399  1.00 25.00           C
ATOM      9  CA  ALA     9      22.123  27.624  23.640  1.00 25.00           C
ATOM     10  CA  LYS    10      18.368  27.952  24.321  1.00 25.00           C
ATOM     11  CA  GLN    11      19.049  30.716  26.883  1.00 25.00           C
ATOM     12  CA  ARG    12      21.259  32.552  24.352  1.00 25.00           C
ATOM     13  CA  ILE    13      18.501  32.275  21.708  1.00 25.00           C
ATOM     14  CA  GLN    14      15.941  33.658  24.197  1.00 25.00           C
ATOM     15  CA  ASP    15      18.278  36.580  25.017  1.00 25.00           C
ATOM     16  CA  THR    16      18.718  37.307  21.282  1.00 25.00           C
ATOM     17  CA  LEU    17      14.919  37.257  20.800  1.00 25.00           C
ATOM     18  CA  ASN    18      14.489  39.672  23.742  1.00 25.00           C
ATOM     19  CA  ARG    19      17.128  42.007  22.241  1.00 25.00           C
ATOM     20  CA  LEU    20      15.332  41.905  18.861  1.00 25.00           C
ATOM     21  CA  GLU    21      12.008  42.730  20.575  1.00 25.00           C
ATOM     22  CA  LEU    22      10.307  39.531  19.534  1.00 25.00           C
ATOM     23  CA  ASP    23      12.492  38.541  16.604  1.00 25.00           C
ATOM     24  CA  VAL    24      10.785  35.225  17.180  1.00 25.00           C
ATOM     25  CA  ASP    25      10.321  33.242  13.937  1.00 25.00           C
ATOM     26  CA  ALA    26       6.716  34.502  13.652  1.00 25.00           C
ATOM     27  CA  TRP    27       7.908  38.103  14.184  1.00 25.00           C
ATOM     28  CA  VAL    28      10.575  37.647  11.474  1.00 25.00           C
ATOM     29  CA  SER    29       7.932  36.260   9.073  1.00 25.00           C
ATOM     30  CA  THR    30       5.659  39.253   9.807  1.00 25.00           C
ATOM     31  CA  ALA    31       8.657  41.352   8.649  1.00 25.00           C
ATOM     32  CA  GLY    32      10.081  39.525   5.561  1.00 25.00           C
ATOM     33  CA  ALA    33       7.557  37.101   3.973  1.00 25.00           C
ATOM     34  CA  ASP    34       4.034  38.002   5.185  1.00 25.00           C
ATOM     35  CA  GLY    35       0.911  40.118   5.456  1.00 25.00           C
ATOM     36  CA  GLY    36      -0.239  40.118   9.089  1.00 25.00           C
ATOM     37  CA  ALA    37      -0.332  38.662  12.628  1.00 25.00           C
ATOM     38  CA  PRO    38      -3.103  40.091  14.799  1.00 25.00           C
ATOM     39  CA  TYR    39      -3.490  38.744  18.374  1.00 25.00           C
ATOM     40  CA  LEU    40       0.082  39.552  19.454  1.00 25.00           C
ATOM     41  CA  VAL    41       0.538  43.017  20.948  1.00 25.00           C
ATOM     42  CA  PRO    42       2.905  43.284  23.852  1.00 25.00           C
ATOM     43  CA  LEU    43       4.072  39.958  22.524  1.00 25.00           C
ATOM     44  CA  SER    44       7.271  38.998  24.348  1.00 25.00           C
ATOM     45  CA  TYR    45       5.659  39.994  27.649  1.00 25.00           C
ATOM     46  CA  LEU    46       3.648  42.879  28.967  1.00 25.00           C
ATOM     47  CA  TRP    47       1.806  42.841  32.343  1.00 25.00           C
ATOM     48  CA  ASP    48      -0.242  45.905  33.389  1.00 25.00           C
ATOM     49  CA  GLY    49      -3.745  44.495  32.648  1.00 25.00           C
ATOM     50  CA  GLU    50      -2.239  43.575  29.311  1.00 25.00           C
ATOM     51  CA  THR    51      -0.468  40.769  27.341  1.00 25.00           C
ATOM     52  CA  PHE    52      -0.826  38.331  24.401  1.00 25.00           C
ATOM     53  CA  LEU    53      -1.087  35.757  21.689  1.00 25.00           C
ATOM     54  CA  VAL    54      -0.211  33.258  18.899  1.00 25.00           C
ATOM     55  CA  ALA    55      -2.391  33.632  15.806  1.00 25.00           C
ATOM     56  CA  THR    56      -6.018  34.612  16.406  1.00 25.00           C
ATOM     57  CA  PRO    57      -6.958  31.081  15.574  1.00 25.00           C
ATOM     58  CA  ALA    58     -10.215  29.203  16.007  1.00 25.00           C
ATOM     59  CA  ALA    59     -11.647  29.773  12.500  1.00 25.00           C
ATOM     60  CA  SER    60      -9.205  27.817  10.307  1.00 25.00           C
ATOM     61  CA  PRO    61     -11.957  28.371   7.657  1.00 25.00           C
ATOM     62  CA  THR    62     -10.004  25.771   5.669  1.00 25.00           C
ATOM     63  CA  GLY    63      -6.955  23.538   6.122  1.00 25.00           C
ATOM     64  CA  ARG    64      -8.023  22.333   9.544  1.00 25.00           C
ATOM     65  CA  ASN    65      -5.618  22.611  12.497  1.00 25.00           C
ATOM     66  CA  LEU    66      -4.316  26.080  13.290  1.00 25.00           C
ATOM     67  CA  SER    67      -4.204  26.605   9.507  1.00 25.00           C
ATOM     68  CA  GLU    68      -0.353  26.523   9.519  1.00 25.00           C
ATOM     69  CA  THR    69       1.186  28.629  12.336  1.00 25.00           C
ATOM     70  CA  GLY    70       2.236  31.438  14.693  1.00 25.00           C
ATOM     71  CA  ARG    71       2.425  35.251  15.130  1.00 25.00           C
ATOM     72  CA  VAL    72       4.294  35.871  18.385  1.00 25.00           C
ATOM     73  CA  ARG    73       4.111  34.948  22.078  1.00 25.00           C
ATOM     74  CA  LEU    74       3.449  35.884  25.675  1.00 25.00           C
ATOM     75  CA  GLY    75       0.493  34.746  27.707  1.00 25.00           C
ATOM     76  CA  ILE    76       0.108  36.900  30.801  1.00 25.00           C
ATOM     77  CA  GLY    77      -3.656  36.744  30.977  1.00 25.00           C
ATOM     78  CA  PRO    78      -6.748  35.170  32.629  1.00 25.00           C
ATOM     79  CA  THR    79      -6.235  31.376  32.357  1.00 25.00           C
ATOM     80  CA  ARG    80      -2.800  31.805  30.780  1.00 25.00           C
ATOM     81  CA  ASP    81      -1.491  30.089  27.614  1.00 25.00           C
ATOM     82  CA  LEU    82      -1.526  31.901  24.262  1.00 25.00           C
ATOM     83  CA  VAL    83       2.022  30.689  23.814  1.00 25.00           C
ATOM     84  CA  LEU    84       3.618  30.563  20.310  1.00 25.00           C
ATOM     85  CA  VAL    85       6.664  31.441  18.217  1.00 25.00           C
ATOM     86  CA  GLU    86       8.499  29.505  20.934  1.00 25.00           C
ATOM     87  CA  GLY    87       7.000  31.335  23.977  1.00 25.00           C
ATOM     88  CA  THR    88       8.716  34.095  25.968  1.00 25.00           C
ATOM     89  CA  ALA    89      10.028  36.910  28.134  1.00 25.00           C
ATOM     90  CA  LEU    90      10.500  39.860  30.466  1.00 25.00           C
ATOM     91  CA  PRO    91      11.391  38.927  34.032  1.00 25.00           C
ATOM     92  CA  LEU    92       9.537  41.219  36.401  1.00 25.00           C
ATOM     93  CA  GLU    93       8.757  41.115  40.132  1.00 25.00           C
ATOM     94  CA  PRO    94      11.621  38.802  40.969  1.00 25.00           C
ATOM     95  CA  ALA    95       9.593  35.575  41.530  1.00 25.00           C
ATOM     96  CA  GLY    96       7.189  32.794  40.605  1.00 25.00           C
ATOM     97  CA  LEU    97       4.289  34.455  38.710  1.00 25.00           C
ATOM     98  CA  PRO    98       2.007  34.465  41.804  1.00 25.00           C
ATOM     99  CA  ASP    99       1.686  30.760  41.177  1.00 25.00           C
ATOM    100  CA  GLY   100       3.730  29.189  38.341  1.00 25.00           C
ATOM    101  CA  VAL   101       4.343  30.526  34.870  1.00 25.00           C
ATOM    102  CA  GLY   102       8.051  30.195  34.179  1.00 25.00           C
ATOM    103  CA  ASP   103       8.048  34.000  34.524  1.00 25.00           C
ATOM    104  CA  THR   104       5.608  34.528  31.612  1.00 25.00           C
ATOM    105  CA  PHE   105       4.956  31.561  29.279  1.00 25.00           C
ATOM    106  CA  ALA   106       3.721  28.238  27.893  1.00 25.00           C
ATOM    107  CA  GLU   107       2.315  24.699  27.583  1.00 25.00           C
ATOM    108  CA  LYS   108       1.288  21.831  29.955  1.00 25.00           C
ATOM    109  CA  THR   109       5.073  21.374  30.186  1.00 25.00           C
ATOM    110  CA  GLY   110       4.630  20.230  33.806  1.00 25.00           C
ATOM    111  CA  PHE   111       2.618  17.436  32.190  1.00 25.00           C
ATOM    112  CA  ASP   112       3.733  16.068  28.820  1.00 25.00           C
ATOM    113  CA  PRO   113       6.279  17.817  26.653  1.00 25.00           C
ATOM    114  CA  ARG   114       6.547  14.853  24.243  1.00 25.00           C
ATOM    115  CA  ARG   115       5.547  17.110  21.316  1.00 25.00           C
ATOM    116  CA  LEU   116       1.938  16.377  22.074  1.00 25.00           C
ATOM    117  CA  THR   117       1.613  18.907  24.959  1.00 25.00           C
ATOM    118  CA  THR   118       2.681  21.726  22.708  1.00 25.00           C
ATOM    119  CA  SER   119       3.058  25.447  22.038  1.00 25.00           C
ATOM    120  CA  TYR   120       5.155  25.719  18.857  1.00 25.00           C
ATOM    121  CA  LEU   121       1.948  26.848  17.309  1.00 25.00           C
ATOM    122  CA  TYR   122      -0.905  28.198  19.387  1.00 25.00           C
ATOM    123  CA  PHE   123      -4.140  30.055  20.007  1.00 25.00           C
ATOM    124  CA  ARG   124      -5.586  33.377  21.266  1.00 25.00           C
ATOM    125  CA  ILE   125      -6.557  31.522  24.429  1.00 25.00           C
ATOM    126  CA  SER   126     -10.278  32.238  24.765  1.00 25.00           C
ATOM    127  CA  PRO   127     -12.676  34.333  26.744  1.00 25.00           C
ATOM    128  CA  ARG   128     -10.555  36.071  29.418  1.00 25.00           C
ATOM    129  CA  ARG   129      -7.440  35.703  27.221  1.00 25.00           C
ATOM    130  CA  VAL   130      -9.336  37.183  24.241  1.00 25.00           C
ATOM    131  CA  GLN   131     -10.487  40.126  26.405  1.00 25.00           C
ATOM    132  CA  ALA   132      -6.885  40.715  27.565  1.00 25.00           C
ATOM    133  CA  TRP   133      -5.679  40.657  23.930  1.00 25.00           C
ATOM    134  CA  ARG   134      -8.394  43.179  22.964  1.00 25.00           C
ATOM    135  CA  GLU   135      -7.351  45.451  25.865  1.00 25.00           C
ATOM    136  CA  ALA   136      -3.692  45.230  24.755  1.00 25.00           C
ATOM    137  CA  ASN   137      -4.700  46.125  21.170  1.00 25.00           C
ATOM    138  CA  GLU   138      -6.703  49.125  22.456  1.00 25.00           C
ATOM    139  CA  LEU   139      -3.693  50.278  24.525  1.00 25.00           C
ATOM    140  CA  SER   140      -1.430  49.968  21.452  1.00 25.00           C
ATOM    141  CA  GLY   141      -3.919  52.013  19.382  1.00 25.00           C
ATOM    142  CA  ARG   142      -4.011  54.703  22.106  1.00 25.00           C
ATOM    143  CA  GLU   143      -0.184  54.814  22.162  1.00 25.00           C
ATOM    144  CA  LEU   144      -0.114  55.175  18.350  1.00 25.00           C
ATOM    145  CA  MET   145       1.299  51.793  17.527  1.00 25.00           C
ATOM    146  CA  ARG   146       4.437  53.789  16.734  1.00 25.00           C
ATOM    147  CA  ASP   147       6.541  54.102  19.884  1.00 25.00           C
ATOM    148  CA  GLY   148       8.704  51.026  19.247  1.00 25.00           C
ATOM    149  CA  GLU   149       7.255  47.667  20.059  1.00 25.00           C
ATOM    150  CA  TRP   150       8.324  44.067  20.608  1.00 25.00           C
ATOM    151  CA  LEU   151       5.963  42.169  18.247  1.00 25.00           C
ATOM    152  CA  VAL   152       3.574  40.245  15.926  1.00 25.00           C
ATOM    153  CA  THR   153       1.538  43.450  15.744  1.00 25.00           C
ATOM    154  CA  ASP   154      -1.448  45.369  14.323  1.00 25.00           C
TER
END
