
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0370TS393_5
# Molecule2: number of CA atoms  154 ( 1177),  selected  154 , name T0370.pdb
# PARAMETERS: T0370TS393_5.T0370.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         7 - 29          4.83    19.10
  LONGEST_CONTINUOUS_SEGMENT:    23         8 - 30          4.61    18.35
  LONGEST_CONTINUOUS_SEGMENT:    23         9 - 31          4.87    18.45
  LCS_AVERAGE:     13.02

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17         8 - 24          1.91    25.52
  LCS_AVERAGE:      5.35

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          0.48    26.95
  LCS_AVERAGE:      3.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     M       1     M       1      3    7   22     3    3    4    6    8    9   13   14   19   20   22   23   24   27   29   33   37   41   42   50 
LCS_GDT     T       2     T       2      3    7   22     3    3    4    7    8    9   13   14   19   20   23   23   25   29   30   33   38   42   42   45 
LCS_GDT     T       3     T       3      4    7   22     3    4    5    7    8    9   12   14   15   17   21   23   24   27   29   33   38   42   43   45 
LCS_GDT     P       4     P       4      4    7   22     3    4    5    7    8    9   13   14   19   20   23   23   26   29   31   34   38   42   45   52 
LCS_GDT     P       5     P       5      4    7   22     3    4    5    7    8    9   13   14   19   20   23   23   26   29   31   34   37   42   45   49 
LCS_GDT     A       6     A       6      4    7   22     3    4    5    7    8    9   13   14   19   20   23   23   27   31   32   34   36   41   45   49 
LCS_GDT     R       7     R       7      4   16   23     3    3    5    7    8    9   13   14   19   20   23   23   27   31   32   34   36   42   45   51 
LCS_GDT     T       8     T       8     15   17   23     8   14   15   15   16   16   17   17   19   20   23   29   30   31   32   35   40   42   48   53 
LCS_GDT     A       9     A       9     15   17   23    13   14   15   15   16   16   17   17   17   18   23   29   30   31   34   37   40   48   52   55 
LCS_GDT     K      10     K      10     15   17   23    13   14   15   15   16   16   17   17   17   18   23   29   30   31   32   37   40   48   52   55 
LCS_GDT     Q      11     Q      11     15   17   23    13   14   15   15   16   16   17   17   19   20   23   29   30   31   34   37   44   49   52   55 
LCS_GDT     R      12     R      12     15   17   23    13   14   15   15   16   16   17   17   19   20   23   29   30   31   35   40   46   49   53   55 
LCS_GDT     I      13     I      13     15   17   23    13   14   15   15   16   16   17   17   17   18   23   29   30   31   35   40   46   49   53   55 
LCS_GDT     Q      14     Q      14     15   17   23    13   14   15   15   16   16   17   17   17   18   23   29   30   31   35   40   46   49   53   55 
LCS_GDT     D      15     D      15     15   17   23    13   14   15   15   16   16   17   17   19   20   23   29   30   31   35   40   46   49   53   55 
LCS_GDT     T      16     T      16     15   17   23    13   14   15   15   16   16   17   17   19   20   23   29   30   33   38   41   46   49   53   57 
LCS_GDT     L      17     L      17     15   17   23    13   14   15   15   16   16   17   17   17   20   23   24   28   38   41   42   46   49   53   57 
LCS_GDT     N      18     N      18     15   17   23    13   14   15   15   16   16   17   17   17   18   23   29   30   33   38   42   46   49   53   57 
LCS_GDT     R      19     R      19     15   17   23    13   14   15   15   16   16   17   17   17   20   25   29   35   39   41   42   46   49   53   57 
LCS_GDT     L      20     L      20     15   17   23    13   14   15   15   16   16   17   17   19   20   25   29   35   39   41   42   45   49   53   57 
LCS_GDT     E      21     E      21     15   17   23    13   14   15   15   16   16   17   17   19   20   23   24   35   39   41   42   45   49   53   55 
LCS_GDT     L      22     L      22     15   17   23     4   14   15   15   16   16   17   17   17   18   23   29   35   39   41   42   45   49   53   55 
LCS_GDT     D      23     D      23      4   17   23     3    4    5   12   16   16   17   17   17   18   23   29   35   39   41   42   45   49   53   55 
LCS_GDT     V      24     V      24      4   17   23     3    4    4    8   12   14   17   17   17   18   23   29   30   32   41   42   45   49   53   55 
LCS_GDT     D      25     D      25      3    6   23     0    3    4    5    6    8   10   13   15   20   23   29   35   39   41   42   46   49   53   57 
LCS_GDT     A      26     A      26      3    6   23     3    3    3    4    6    7   10   13   14   18   22   26   35   39   41   42   46   49   53   57 
LCS_GDT     W      27     W      27      3    3   23     3    3    4    6    6    8   10   13   18   20   25   29   35   39   41   43   46   51   54   59 
LCS_GDT     V      28     V      28      3    5   23     4    5    7    9   13   15   16   19   20   22   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     S      29     S      29      3    5   23     2    3    3    6   10   15   16   19   20   22   26   29   35   39   41   44   46   51   54   59 
LCS_GDT     T      30     T      30      3    5   23     0    5    7    9   13   15   16   18   20   22   26   27   32   35   39   44   46   51   54   59 
LCS_GDT     A      31     A      31      3    5   23     3    3    6    8   12   15   16   19   20   22   26   27   32   35   39   44   46   51   54   59 
LCS_GDT     G      32     G      32      3    5   19     4    6    6    9   11   13   15   18   19   20   21   23   26   30   36   41   46   49   53   59 
LCS_GDT     A      33     A      33      3    4   19     3    3    6    9   11   13   14   16   18   20   21   22   26   30   35   39   46   49   53   56 
LCS_GDT     D      34     D      34      3    4   19     3    3    3    4    5    7    9   12   17   20   21   23   27   34   37   41   46   51   54   59 
LCS_GDT     G      35     G      35      3    5   19     3    3    4    4    5    7    9   12   15   19   23   27   31   35   39   44   46   51   54   59 
LCS_GDT     G      36     G      36      3    5   19     3    3    4    4    5   10   10   12   12   16   19   26   30   35   39   44   45   51   54   59 
LCS_GDT     A      37     A      37      3    5   19     3    3    3    4    5    7   10   12   12   15   18   22   26   27   34   38   45   48   54   59 
LCS_GDT     P      38     P      38      3    5   19     4    4    4    5    5    9   10   12   12   14   18   20   29   34   37   39   45   49   54   59 
LCS_GDT     Y      39     Y      39      3    5   21     4    4    4    5    5    7    9   12   13   20   21   25   28   31   35   37   42   46   51   54 
LCS_GDT     L      40     L      40      3    6   21     4    4    4    5    8   10   11   13   19   20   23   23   28   33   36   39   42   46   51   54 
LCS_GDT     V      41     V      41      3    6   21     3    3    3    5    6    7   13   13   19   20   22   23   26   29   31   33   38   41   46   48 
LCS_GDT     P      42     P      42      3    6   21     3    3    4    5    8   10   13   13   19   20   22   23   26   32   35   38   42   46   49   52 
LCS_GDT     L      43     L      43      3    6   21     3    3    4    5    9   11   15   16   19   21   23   31   33   34   36   40   43   46   50   59 
LCS_GDT     S      44     S      44      3    6   21     1    3    4    5    9   11   15   16   19   23   25   31   33   34   37   44   45   51   54   59 
LCS_GDT     Y      45     Y      45      4    6   21     3    4    5   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     L      46     L      46      4   12   21     3    5    6   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     W      47     W      47      4   12   22     3    4    5   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     D      48     D      48      4   12   22     3    4    5    8   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     G      49     G      49      4   12   22     3    6    7    9   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     E      50     E      50      4   12   22     3    4    5    7   10   13   15   19   20   22   25   31   35   39   41   44   46   51   54   59 
LCS_GDT     T      51     T      51      4   12   22     4    6    7    9   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     F      52     F      52      5   12   22     3    4    6   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     L      53     L      53      5   12   22     4    6    7   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     V      54     V      54      5   12   22     4    6    7   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     A      55     A      55      5   12   22     4    6    7   10   13   15   16   19   20   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     T      56     T      56      5   12   22     3    3    6   10   13   14   16   18   19   23   26   31   33   35   39   44   46   51   54   59 
LCS_GDT     P      57     P      57      5   12   22     3    3    6   10   12   14   16   18   19   20   23   28   33   35   39   44   45   51   54   59 
LCS_GDT     A      58     A      58      5    7   22     3    4    5    5    7    8   11   16   19   20   23   28   30   34   37   40   44   47   54   59 
LCS_GDT     A      59     A      59      5    6   22     3    5    6    8   12   15   16   18   19   22   26   28   33   35   39   44   45   51   54   59 
LCS_GDT     S      60     S      60      5    6   22     3    4    5    5    6    8   11   13   17   18   22   27   30   35   39   44   45   51   54   59 
LCS_GDT     P      61     P      61      5    6   22     3    4    5    5    6    8    9   11   12   17   20   21   23   26   30   35   39   45   52   55 
LCS_GDT     T      62     T      62      5    6   22     3    4    5    5    6    6    8    9   11   13   13   15   16   21   27   30   38   42   43   45 
LCS_GDT     G      63     G      63      4    6   22     3    4    4    5    6    6    7   11   12   15   18   20   24   25   29   32   38   42   43   48 
LCS_GDT     R      64     R      64      4    6   22     3    4    4    5    5    8    9   13   14   17   20   21   24   25   29   32   38   42   44   50 
LCS_GDT     N      65     N      65      4    6   22     3    4    4    5    6    8    9   13   14   17   20   21   24   25   29   32   35   42   42   45 
LCS_GDT     L      66     L      66      3    6   22     3    3    4    5    5    8    9   13   14   17   20   21   24   25   29   32   38   42   44   50 
LCS_GDT     S      67     S      67      3    6   22     3    3    4    7    7    9   10   13   13   17   20   21   23   25   29   31   35   42   46   50 
LCS_GDT     E      68     E      68      4    6   22     3    3    4    7    7    9   10   13   14   17   20   23   25   25   29   32   35   42   46   50 
LCS_GDT     T      69     T      69      4    6   22     3    3    4    7    7    9   10   13   14   17   20   23   25   25   28   32   35   42   46   50 
LCS_GDT     G      70     G      70      4    6   22     3    3    5    6    6    7    9   10   14   17   20   23   25   25   31   33   35   42   46   50 
LCS_GDT     R      71     R      71      4    8   21     3    3    5    7    9   11   12   13   14   16   19   23   26   27   31   33   38   42   46   50 
LCS_GDT     V      72     V      72      4    8   21     3    3    5    7    9   11   12   13   14   17   20   23   27   32   36   41   46   49   54   59 
LCS_GDT     R      73     R      73      4    8   21     3    4    6    8    9   11   12   14   17   19   25   29   35   39   41   44   46   51   54   59 
LCS_GDT     L      74     L      74      4    8   21     3    4    5    8    9   11   12   14   19   23   25   31   35   39   41   44   46   51   54   59 
LCS_GDT     G      75     G      75      4    8   21     3    4    6    8    9   11   12   13   14   17   20   23   27   31   36   42   44   48   53   55 
LCS_GDT     I      76     I      76      4    8   21     3    3    6    8    9   11   12   13   14   17   20   23   26   29   33   39   42   45   46   50 
LCS_GDT     G      77     G      77      4    8   21     3    4    6    8    9   11   12   13   14   16   19   23   25   29   31   33   35   42   46   50 
LCS_GDT     P      78     P      78      4    8   21     3    4    4    7    9   11   12   13   14   16   19   23   25   29   31   33   35   37   42   46 
LCS_GDT     T      79     T      79      4    5   21     3    4    4    4    6    9   10   13   14   16   18   23   25   25   29   31   34   37   38   41 
LCS_GDT     R      80     R      80      4    4   16     3    4    4    4    4    4    5    7   10   11   13   16   18   23   26   27   32   37   38   41 
LCS_GDT     D      81     D      81      3    6   16     3    3    4    5    6    6    6    8   10   11   12   16   17   21   21   30   32   35   38   41 
LCS_GDT     L      82     L      82      4    6   16     3    4    5    5    6    6    6    7   10   11   13   16   17   21   22   30   32   36   43   47 
LCS_GDT     V      83     V      83      4    6   20     3    4    5    5    6    6    7   11   12   13   14   17   23   25   26   30   34   37   43   47 
LCS_GDT     L      84     L      84      4    6   20     3    4    5    7    9   11   12   13   14   17   20   23   27   27   31   33   36   39   43   47 
LCS_GDT     V      85     V      85      4    6   21     4    4    5    5    7    9   13   13   19   20   23   23   27   31   32   34   36   41   45   49 
LCS_GDT     E      86     E      86      3    6   21     2    4    5    5    6    7   13   13   19   20   23   23   27   31   32   34   36   41   42   47 
LCS_GDT     G      87     G      87      3    6   21     0    3    3    4    6    8   12   15   16   18   23   23   27   31   37   42   44   46   53   57 
LCS_GDT     T      88     T      88      3    6   21     0    3    3    4    9   13   15   16   16   21   25   31   33   34   37   42   44   49   53   57 
LCS_GDT     A      89     A      89      3    6   21     3    3    4    7   10   13   15   16   19   23   26   31   35   39   41   44   45   51   54   59 
LCS_GDT     L      90     L      90      4    6   21     3    3    4    6   11   13   14   19   20   22   26   29   35   39   41   44   45   51   54   59 
LCS_GDT     P      91     P      91      4    6   21     3    3    4    5    6   10   11   15   16   18   25   29   35   39   41   44   46   51   54   59 
LCS_GDT     L      92     L      92      4   10   21     3    3    7    8   10   10   11   15   16   18   23   29   30   31   36   42   46   51   54   59 
LCS_GDT     E      93     E      93      4   10   21     3    3    7    8   10   10   11   15   16   18   20   22   27   30   35   41   46   49   53   56 
LCS_GDT     P      94     P      94      4   10   21     3    3    5    6   10   10   11   15   16   18   20   22   26   30   35   40   46   49   53   55 
LCS_GDT     A      95     A      95      5   10   21     3    6    6    8   10   10   11   15   16   18   20   29   30   30   35   40   46   49   53   55 
LCS_GDT     G      96     G      96      5   10   21     3    6    7    8   10   10   11   15   16   18   23   29   30   30   34   37   46   49   53   55 
LCS_GDT     L      97     L      97      5   10   21     3    6    7    8   10   10   11   15   16   18   23   29   30   30   32   36   44   49   52   55 
LCS_GDT     P      98     P      98      5   10   21     3    6    7    8   10   10   11   15   16   18   20   21   23   25   29   31   34   40   43   50 
LCS_GDT     D      99     D      99      5   10   21     3    6    7    8   10   10   11   15   16   18   20   20   23   25   29   31   33   37   43   48 
LCS_GDT     G     100     G     100      4   10   21     3    4    4    6   10   10   11   15   16   18   20   20   22   25   29   30   32   42   43   48 
LCS_GDT     V     101     V     101      4   10   21     3    6    7    8   10   10   11   15   16   18   20   21   23   25   29   31   37   42   46   50 
LCS_GDT     G     102     G     102      4    8   21     3    4    5    8    9   10   10   12   14   18   23   29   30   30   32   35   40   42   48   55 
LCS_GDT     D     103     D     103      3    4   21     3    3    4    4    6    8    9   12   13   15   17   29   30   30   32   33   38   42   46   51 
LCS_GDT     T     104     T     104      3    4   21     3    3    5    8    9   10   10   12   14   18   23   29   30   30   32   35   40   42   46   51 
LCS_GDT     F     105     F     105      3    4   21     0    3    5    8    9   10   10   12   14   18   23   29   30   30   34   40   44   49   53   55 
LCS_GDT     A     106     A     106      3    4   20     0    3    4    5    5    9   10   12   14   17   20   22   25   30   35   40   46   49   53   55 
LCS_GDT     E     107     E     107      4    6   20     3    4    5    6    6    7    8    9   12   17   20   22   25   30   35   40   46   49   53   55 
LCS_GDT     K     108     K     108      4    6   20     3    4    5    6    6    6    7    8   12   14   17   22   26   29   35   40   46   49   53   55 
LCS_GDT     T     109     T     109      4    6   20     3    4    5    6    6    8   10   13   14   16   19   20   26   29   32   35   38   43   48   55 
LCS_GDT     G     110     G     110      4    6   20     3    4    5    6    6    8    9   11   14   16   19   22   26   30   35   40   46   49   53   55 
LCS_GDT     F     111     F     111      4    6   20     3    4    5    6    6    7    9   13   14   16   21   23   27   33   36   41   46   49   53   55 
LCS_GDT     D     112     D     112      4    6   18     3    3    5    6    6    8   10   13   13   16   21   24   28   33   38   41   45   49   53   57 
LCS_GDT     P     113     P     113      3    5   18     3    3    4    4    6    8    9   12   12   16   25   29   35   39   41   42   45   51   54   59 
LCS_GDT     R     114     R     114      3    5   18     3    3    4    6    7   15   15   19   20   22   26   29   35   39   41   44   45   51   54   59 
LCS_GDT     R     115     R     115      3    5   18     3    3    4    6    7   15   15   19   20   22   26   29   35   39   41   44   45   51   54   59 
LCS_GDT     L     116     L     116      4    4   18     3    4    4    6    7   15   15   19   20   22   26   29   35   39   41   44   45   51   54   59 
LCS_GDT     T     117     T     117      4    5   18     3    4    4    4    6    8   11   12   14   16   19   20   26   32   39   44   45   51   54   59 
LCS_GDT     T     118     T     118      4    5   18     3    4    4    4    6    7    9   12   12   14   17   20   26   29   33   42   45   51   54   59 
LCS_GDT     S     119     S     119      4    9   18     3    4    4    6    7    9   11   13   15   17   22   31   33   35   39   44   45   51   54   59 
LCS_GDT     Y     120     Y     120      3    9   18     3    5    6    7    8   10   10   13   19   23   25   31   33   35   39   44   45   51   54   59 
LCS_GDT     L     121     L     121      3    9   18     3    3    4    6    8   10   11   13   15   17   20   31   33   33   36   40   43   49   54   59 
LCS_GDT     Y     122     Y     122      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   33   39   41   44   45   51   54   59 
LCS_GDT     F     123     F     123      6    9   18     3    5    6    7    8   11   13   16   19   23   25   31   35   39   41   44   45   51   54   59 
LCS_GDT     R     124     R     124      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   35   39   41   44   45   51   54   59 
LCS_GDT     I     125     I     125      6    9   18     3    5    6    7    8   11   13   16   19   23   26   31   35   39   41   44   46   51   54   59 
LCS_GDT     S     126     S     126      6    9   18     3    5    6    7    8   11   13   16   19   23   25   31   33   39   41   44   45   51   54   59 
LCS_GDT     P     127     P     127      6    9   18     3    5    6    7    8   13   14   16   19   23   25   31   33   35   39   44   45   51   54   59 
LCS_GDT     R     128     R     128      3    9   18     3    3    5   10   11   12   14   16   19   23   26   31   33   35   39   44   45   51   54   59 
LCS_GDT     R     129     R     129      3    4   18     3    3    4    4    4    6   10   14   19   23   25   31   33   34   38   44   45   51   54   59 
LCS_GDT     V     130     V     130      3    4   18     0    3    4    4    4    6    7   13   18   22   25   31   33   34   37   44   45   51   54   59 
LCS_GDT     Q     131     Q     131      3    3   16     0    3    3    3    4    7   11   15   18   20   25   31   33   34   37   40   43   51   53   59 
LCS_GDT     A     132     A     132      3    3   16     0    3    3    5    6    8   10   12   15   20   24   31   33   33   36   40   43   46   50   54 
LCS_GDT     W     133     W     133      3    4   15     0    3    3    4    4    4    6    9   11   14   17   20   24   28   31   39   42   45   47   53 
LCS_GDT     R     134     R     134      3    8   14     1    3    3    5    5    6    9   10   11   14   17   20   24   28   30   33   41   45   50   53 
LCS_GDT     E     135     E     135      6    9   14     4    5    7    8    9    9    9   10   10   11   14   17   24   26   29   33   36   41   47   51 
LCS_GDT     A     136     A     136      6    9   14     4    5    7    8    9    9    9   10   10   10   12   15   17   18   22   25   30   34   44   48 
LCS_GDT     N     137     N     137      6    9   14     4    5    7    8    9    9    9   10   10   10   12   14   16   17   22   25   30   33   43   47 
LCS_GDT     E     138     E     138      6    9   16     4    5    7    8    9    9    9   10   12   17   19   23   27   31   36   39   44   51   53   59 
LCS_GDT     L     139     L     139      6    9   16     4    5    7    8    9    9    9   10   17   18   20   27   30   32   37   44   45   51   54   59 
LCS_GDT     S     140     S     140      6    9   16     4    5    7    8    9    9    9   10   10   12   14   17   20   28   38   41   44   49   53   57 
LCS_GDT     G     141     G     141      5    9   16     3    5    5    8    9    9    9   12   17   19   23   27   35   39   41   42   45   49   53   59 
LCS_GDT     R     142     R     142      5    9   16     4    5    7    8   12   15   16   19   20   22   26   29   35   39   41   44   45   51   54   59 
LCS_GDT     E     143     E     143      3    9   16     3    3    4    6    9    9   10   17   18   21   25   29   35   39   41   42   45   49   53   57 
LCS_GDT     L     144     L     144      3    7   16     3    3    4    4    6    8   10   13   13   18   20   20   35   39   41   42   45   49   52   56 
LCS_GDT     M     145     M     145      3    5   16     3    3    4    4    6    8    9   10   12   18   20   20   24   32   36   39   45   49   52   56 
LCS_GDT     R     146     R     146      3    5   16     3    3    4    4    6    7   11   11   12   15   17   18   24   29   31   39   46   49   53   54 
LCS_GDT     D     147     D     147      3    6   16     3    3    4    5    6    7    8    9   11   14   17   18   24   25   29   33   38   42   46   50 
LCS_GDT     G     148     G     148      4    6   16     3    4    4    5    6    7    8   10   13   15   17   20   24   29   31   33   38   42   46   50 
LCS_GDT     E     149     E     149      4    6   16     3    4    4    5    6    7    8    8   11   14   17   20   23   29   31   33   38   42   46   50 
LCS_GDT     W     150     W     150      4    6   16     3    4    4    5    7   10   10   12   13   14   17   18   23   29   31   33   35   38   44   49 
LCS_GDT     L     151     L     151      4    6   16     3    4    4    5    6    6    8    8    9   13   17   17   19   20   21   30   33   37   40   43 
LCS_GDT     V     152     V     152      3    6   16     3    3    4    5    6    6    8    8   11   11   13   15   15   18   20   22   23   25   28   31 
LCS_GDT     T     153     T     153      3    6   16     3    3    4    4    6    6    8    8   10   10   12   14   15   18   18   22   23   25   27   31 
LCS_GDT     D     154     D     154      3    6   14     3    3    3    4    6    6    8    8    9    9    9   12   14   15   16   22   23   25   27   31 
LCS_AVERAGE  LCS_A:   7.21  (   3.25    5.35   13.02 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     14     15     15     16     16     17     19     20     23     26     31     35     39     41     44     46     51     54     59 
GDT PERCENT_CA   8.44   9.09   9.74   9.74  10.39  10.39  11.04  12.34  12.99  14.94  16.88  20.13  22.73  25.32  26.62  28.57  29.87  33.12  35.06  38.31
GDT RMS_LOCAL    0.23   0.35   0.48   0.48   1.14   1.14   1.91   2.90   3.01   3.69   4.17   4.41   4.82   5.07   5.23   5.68   6.29   6.30   6.47   7.97
GDT RMS_ALL_CA  26.72  27.02  26.95  26.95  26.58  26.58  25.52  16.62  16.60  19.61  16.81  20.16  17.42  17.51  17.53  17.21  16.01  17.01  17.07  16.96

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         30.196
LGA    T       2      T       2         31.172
LGA    T       3      T       3         33.243
LGA    P       4      P       4         30.299
LGA    P       5      P       5         34.380
LGA    A       6      A       6         32.466
LGA    R       7      R       7         30.955
LGA    T       8      T       8         30.270
LGA    A       9      A       9         25.709
LGA    K      10      K      10         24.446
LGA    Q      11      Q      11         24.624
LGA    R      12      R      12         20.463
LGA    I      13      I      13         16.809
LGA    Q      14      Q      14         18.194
LGA    D      15      D      15         16.691
LGA    T      16      T      16         11.801
LGA    L      17      L      17         11.554
LGA    N      18      N      18         14.334
LGA    R      19      R      19         10.119
LGA    L      20      L      20          8.342
LGA    E      21      E      21         13.073
LGA    L      22      L      22         13.981
LGA    D      23      D      23         12.874
LGA    V      24      V      24         13.622
LGA    D      25      D      25         10.527
LGA    A      26      A      26         11.292
LGA    W      27      W      27          6.362
LGA    V      28      V      28          3.053
LGA    S      29      S      29          2.207
LGA    T      30      T      30          4.817
LGA    A      31      A      31          3.961
LGA    G      32      G      32          9.892
LGA    A      33      A      33         12.891
LGA    D      34      D      34          9.207
LGA    G      35      G      35          7.721
LGA    G      36      G      36          9.382
LGA    A      37      A      37         11.588
LGA    P      38      P      38         11.959
LGA    Y      39      Y      39         14.661
LGA    L      40      L      40         16.016
LGA    V      41      V      41         17.061
LGA    P      42      P      42         14.569
LGA    L      43      L      43         11.676
LGA    S      44      S      44          9.284
LGA    Y      45      Y      45          3.404
LGA    L      46      L      46          2.355
LGA    W      47      W      47          1.841
LGA    D      48      D      48          1.680
LGA    G      49      G      49          1.284
LGA    E      50      E      50          3.787
LGA    T      51      T      51          2.146
LGA    F      52      F      52          2.790
LGA    L      53      L      53          2.646
LGA    V      54      V      54          2.962
LGA    A      55      A      55          3.928
LGA    T      56      T      56          5.694
LGA    P      57      P      57          7.770
LGA    A      58      A      58         10.163
LGA    A      59      A      59          5.823
LGA    S      60      S      60          6.551
LGA    P      61      P      61         11.046
LGA    T      62      T      62         15.795
LGA    G      63      G      63         16.357
LGA    R      64      R      64         17.858
LGA    N      65      N      65         18.964
LGA    L      66      L      66         16.417
LGA    S      67      S      67         19.930
LGA    E      68      E      68         24.198
LGA    T      69      T      69         21.373
LGA    G      70      G      70         17.180
LGA    R      71      R      71         14.831
LGA    V      72      V      72          7.939
LGA    R      73      R      73          5.400
LGA    L      74      L      74          7.327
LGA    G      75      G      75         13.444
LGA    I      76      I      76         17.512
LGA    G      77      G      77         23.488
LGA    P      78      P      78         29.004
LGA    T      79      T      79         30.567
LGA    R      80      R      80         29.275
LGA    D      81      D      81         25.721
LGA    L      82      L      82         20.171
LGA    V      83      V      83         18.882
LGA    L      84      L      84         18.101
LGA    V      85      V      85         17.209
LGA    E      86      E      86         19.211
LGA    G      87      G      87         12.778
LGA    T      88      T      88         12.427
LGA    A      89      A      89          6.222
LGA    L      90      L      90          3.720
LGA    P      91      P      91          7.454
LGA    L      92      L      92          8.835
LGA    E      93      E      93         12.626
LGA    P      94      P      94         19.214
LGA    A      95      A      95         19.951
LGA    G      96      G      96         16.304
LGA    L      97      L      97         17.902
LGA    P      98      P      98         23.753
LGA    D      99      D      99         30.223
LGA    G     100      G     100         29.923
LGA    V     101      V     101         25.061
LGA    G     102      G     102         21.534
LGA    D     103      D     103         26.900
LGA    T     104      T     104         23.853
LGA    F     105      F     105         16.995
LGA    A     106      A     106         15.246
LGA    E     107      E     107         18.521
LGA    K     108      K     108         18.983
LGA    T     109      T     109         21.043
LGA    G     110      G     110         21.610
LGA    F     111      F     111         14.976
LGA    D     112      D     112         11.131
LGA    P     113      P     113          7.559
LGA    R     114      R     114          3.237
LGA    R     115      R     115          3.473
LGA    L     116      L     116          3.338
LGA    T     117      T     117          8.128
LGA    T     118      T     118          9.124
LGA    S     119      S     119          8.819
LGA    Y     120      Y     120          8.680
LGA    L     121      L     121         10.152
LGA    Y     122      Y     122          6.313
LGA    F     123      F     123          7.081
LGA    R     124      R     124          6.015
LGA    I     125      I     125          6.892
LGA    S     126      S     126          8.158
LGA    P     127      P     127          9.790
LGA    R     128      R     128          8.880
LGA    R     129      R     129         10.773
LGA    V     130      V     130         11.143
LGA    Q     131      Q     131         14.080
LGA    A     132      A     132         15.652
LGA    W     133      W     133         16.591
LGA    R     134      R     134         18.511
LGA    E     135      E     135         21.727
LGA    A     136      A     136         19.889
LGA    N     137      N     137         18.051
LGA    E     138      E     138         13.107
LGA    L     139      L     139         11.356
LGA    S     140      S     140         10.631
LGA    G     141      G     141          5.959
LGA    R     142      R     142          3.415
LGA    E     143      E     143          5.434
LGA    L     144      L     144          9.558
LGA    M     145      M     145         11.530
LGA    R     146      R     146         16.351
LGA    D     147      D     147         21.166
LGA    G     148      G     148         20.756
LGA    E     149      E     149         20.036
LGA    W     150      W     150         20.191
LGA    L     151      L     151         19.715
LGA    V     152      V     152         21.663
LGA    T     153      T     153         21.032
LGA    D     154      D     154         22.670

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     19    2.90    14.935    12.006     0.634

LGA_LOCAL      RMSD =  2.896  Number of atoms =   19  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.543  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 14.391  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.269696 * X  +  -0.328920 * Y  +   0.905028 * Z  +   1.161967
  Y_new =   0.125275 * X  +  -0.919882 * Y  +  -0.371650 * Z  +  31.190958
  Z_new =   0.954762 * X  +   0.213610 * Y  +  -0.206883 * Z  +  17.687023 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.340196   -0.801396  [ DEG:   134.0834    -45.9166 ]
  Theta =  -1.268858   -1.872735  [ DEG:   -72.7002   -107.2998 ]
  Phi   =   0.434852   -2.706741  [ DEG:    24.9152   -155.0848 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS393_5                                  
REMARK     2: T0370.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS393_5.T0370.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   19   2.90  12.006    14.39
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS393_5
PFRMAT TS
TARGET T0370
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      19.886  53.331  33.561  1.00 25.00           C
ATOM      2  CA  THR     2      16.882  53.382  31.229  1.00 25.00           C
ATOM      3  CA  THR     3      14.073  55.824  30.536  1.00 25.00           C
ATOM      4  CA  PRO     4      11.852  54.589  27.671  1.00 25.00           C
ATOM      5  CA  PRO     5       8.076  54.301  27.153  1.00 25.00           C
ATOM      6  CA  ALA     6       6.344  50.852  27.213  1.00 25.00           C
ATOM      7  CA  ARG     7       3.796  51.116  24.367  1.00 25.00           C
ATOM      8  CA  THR     8       6.618  51.808  21.872  1.00 25.00           C
ATOM      9  CA  ALA     9       8.547  48.766  23.172  1.00 25.00           C
ATOM     10  CA  LYS    10       5.415  46.591  22.801  1.00 25.00           C
ATOM     11  CA  GLN    11       4.936  47.851  19.216  1.00 25.00           C
ATOM     12  CA  ARG    12       8.594  47.050  18.418  1.00 25.00           C
ATOM     13  CA  ILE    13       8.165  43.531  19.866  1.00 25.00           C
ATOM     14  CA  GLN    14       5.016  43.017  17.748  1.00 25.00           C
ATOM     15  CA  ASP    15       6.900  44.176  14.621  1.00 25.00           C
ATOM     16  CA  THR    16       9.754  41.750  15.412  1.00 25.00           C
ATOM     17  CA  LEU    17       7.240  38.894  15.850  1.00 25.00           C
ATOM     18  CA  ASN    18       5.619  39.775  12.494  1.00 25.00           C
ATOM     19  CA  ARG    19       9.057  39.786  10.808  1.00 25.00           C
ATOM     20  CA  LEU    20       9.845  36.364  12.336  1.00 25.00           C
ATOM     21  CA  GLU    21       6.494  35.004  11.077  1.00 25.00           C
ATOM     22  CA  LEU    22       5.781  36.744   7.762  1.00 25.00           C
ATOM     23  CA  ASP    23       6.674  33.510   5.966  1.00 25.00           C
ATOM     24  CA  VAL    24       3.610  31.301   6.174  1.00 25.00           C
ATOM     25  CA  ASP    25       1.160  29.657   8.615  1.00 25.00           C
ATOM     26  CA  ALA    26       1.291  26.406   6.596  1.00 25.00           C
ATOM     27  CA  TRP    27       5.120  26.502   6.646  1.00 25.00           C
ATOM     28  CA  VAL    28       5.082  27.042  10.436  1.00 25.00           C
ATOM     29  CA  SER    29       2.690  24.081  10.860  1.00 25.00           C
ATOM     30  CA  THR    30       4.983  21.892   8.710  1.00 25.00           C
ATOM     31  CA  ALA    31       1.887  21.539   6.503  1.00 25.00           C
ATOM     32  CA  GLY    32       4.456  20.552   3.899  1.00 25.00           C
ATOM     33  CA  ALA    33       6.556  18.051   5.881  1.00 25.00           C
ATOM     34  CA  ASP    34       3.252  16.793   7.409  1.00 25.00           C
ATOM     35  CA  GLY    35       5.042  15.025  10.309  1.00 25.00           C
ATOM     36  CA  GLY    36       3.507  17.347  12.916  1.00 25.00           C
ATOM     37  CA  ALA    37       3.080  20.582  14.946  1.00 25.00           C
ATOM     38  CA  PRO    38       6.313  22.205  16.121  1.00 25.00           C
ATOM     39  CA  TYR    39       4.648  21.853  19.531  1.00 25.00           C
ATOM     40  CA  LEU    40       1.180  21.861  21.023  1.00 25.00           C
ATOM     41  CA  VAL    41       2.054  25.146  22.636  1.00 25.00           C
ATOM     42  CA  PRO    42       5.019  27.017  21.196  1.00 25.00           C
ATOM     43  CA  LEU    43       6.390  27.015  17.684  1.00 25.00           C
ATOM     44  CA  SER    44       4.921  30.479  18.467  1.00 25.00           C
ATOM     45  CA  TYR    45       4.564  34.301  18.444  1.00 25.00           C
ATOM     46  CA  LEU    46       3.337  35.768  21.732  1.00 25.00           C
ATOM     47  CA  TRP    47       5.041  37.765  24.524  1.00 25.00           C
ATOM     48  CA  ASP    48       5.087  38.203  28.309  1.00 25.00           C
ATOM     49  CA  GLY    49       7.724  35.517  28.616  1.00 25.00           C
ATOM     50  CA  GLU    50       7.925  33.553  25.306  1.00 25.00           C
ATOM     51  CA  THR    51       5.125  31.459  23.824  1.00 25.00           C
ATOM     52  CA  PHE    52       1.568  30.740  22.671  1.00 25.00           C
ATOM     53  CA  LEU    53       0.031  32.439  19.570  1.00 25.00           C
ATOM     54  CA  VAL    54      -0.530  32.529  15.801  1.00 25.00           C
ATOM     55  CA  ALA    55      -3.625  32.951  13.663  1.00 25.00           C
ATOM     56  CA  THR    56      -2.816  29.925  11.529  1.00 25.00           C
ATOM     57  CA  PRO    57      -4.893  29.209   8.438  1.00 25.00           C
ATOM     58  CA  ALA    58      -6.763  28.883   5.168  1.00 25.00           C
ATOM     59  CA  ALA    59     -10.547  29.361   5.164  1.00 25.00           C
ATOM     60  CA  SER    60      -9.981  32.631   3.363  1.00 25.00           C
ATOM     61  CA  PRO    61     -12.937  32.278   0.919  1.00 25.00           C
ATOM     62  CA  THR    62     -11.290  34.846  -1.331  1.00 25.00           C
ATOM     63  CA  GLY    63      -7.657  33.745  -1.921  1.00 25.00           C
ATOM     64  CA  ARG    64      -6.717  37.060  -0.215  1.00 25.00           C
ATOM     65  CA  ASN    65      -8.545  38.649   2.674  1.00 25.00           C
ATOM     66  CA  LEU    66      -6.544  36.586   5.208  1.00 25.00           C
ATOM     67  CA  SER    67      -4.769  39.714   6.342  1.00 25.00           C
ATOM     68  CA  GLU    68      -1.349  41.305   6.676  1.00 25.00           C
ATOM     69  CA  THR    69      -0.328  38.652   9.230  1.00 25.00           C
ATOM     70  CA  GLY    70       0.610  36.760  12.431  1.00 25.00           C
ATOM     71  CA  ARG    71       2.165  34.083  10.176  1.00 25.00           C
ATOM     72  CA  VAL    72       2.613  31.380  12.821  1.00 25.00           C
ATOM     73  CA  ARG    73       2.017  28.300  14.999  1.00 25.00           C
ATOM     74  CA  LEU    74       1.685  25.297  17.404  1.00 25.00           C
ATOM     75  CA  GLY    75      -0.667  27.318  19.635  1.00 25.00           C
ATOM     76  CA  ILE    76      -1.467  26.662  23.314  1.00 25.00           C
ATOM     77  CA  GLY    77      -1.235  25.251  26.839  1.00 25.00           C
ATOM     78  CA  PRO    78      -2.581  21.863  25.758  1.00 25.00           C
ATOM     79  CA  THR    79      -4.359  21.655  22.435  1.00 25.00           C
ATOM     80  CA  ARG    80      -4.642  23.935  19.460  1.00 25.00           C
ATOM     81  CA  ASP    81      -2.639  22.602  16.452  1.00 25.00           C
ATOM     82  CA  LEU    82      -1.972  25.169  13.784  1.00 25.00           C
ATOM     83  CA  VAL    83      -3.710  27.946  15.710  1.00 25.00           C
ATOM     84  CA  LEU    84      -4.625  30.745  18.141  1.00 25.00           C
ATOM     85  CA  VAL    85      -4.972  34.456  18.394  1.00 25.00           C
ATOM     86  CA  GLU    86      -6.818  34.485  21.692  1.00 25.00           C
ATOM     87  CA  GLY    87      -4.151  31.988  22.666  1.00 25.00           C
ATOM     88  CA  THR    88      -6.929  30.579  24.903  1.00 25.00           C
ATOM     89  CA  ALA    89      -6.426  27.368  22.948  1.00 25.00           C
ATOM     90  CA  LEU    90      -6.201  25.494  26.250  1.00 25.00           C
ATOM     91  CA  PRO    91      -8.192  22.687  27.741  1.00 25.00           C
ATOM     92  CA  LEU    92     -11.627  22.645  26.222  1.00 25.00           C
ATOM     93  CA  GLU    93     -12.778  21.360  29.610  1.00 25.00           C
ATOM     94  CA  PRO    94     -10.659  18.235  30.054  1.00 25.00           C
ATOM     95  CA  ALA    95     -10.962  16.704  26.573  1.00 25.00           C
ATOM     96  CA  GLY    96     -13.550  18.312  24.391  1.00 25.00           C
ATOM     97  CA  LEU    97     -11.295  19.349  21.520  1.00 25.00           C
ATOM     98  CA  PRO    98     -13.609  17.128  19.407  1.00 25.00           C
ATOM     99  CA  ASP    99     -11.978  14.576  17.036  1.00 25.00           C
ATOM    100  CA  GLY   100      -8.839  15.115  19.114  1.00 25.00           C
ATOM    101  CA  VAL   101      -7.571  17.850  16.801  1.00 25.00           C
ATOM    102  CA  GLY   102      -8.932  21.300  17.503  1.00 25.00           C
ATOM    103  CA  ASP   103     -10.452  21.178  14.027  1.00 25.00           C
ATOM    104  CA  THR   104      -9.565  24.850  13.596  1.00 25.00           C
ATOM    105  CA  PHE   105      -8.684  27.301  16.351  1.00 25.00           C
ATOM    106  CA  ALA   106      -9.593  30.904  17.114  1.00 25.00           C
ATOM    107  CA  GLU   107     -12.011  32.374  19.720  1.00 25.00           C
ATOM    108  CA  LYS   108     -13.605  34.192  22.656  1.00 25.00           C
ATOM    109  CA  THR   109     -17.207  33.116  22.000  1.00 25.00           C
ATOM    110  CA  GLY   110     -18.449  32.552  18.471  1.00 25.00           C
ATOM    111  CA  PHE   111     -17.620  36.266  18.031  1.00 25.00           C
ATOM    112  CA  ASP   112     -18.296  39.912  18.878  1.00 25.00           C
ATOM    113  CA  PRO   113     -16.037  39.226  21.848  1.00 25.00           C
ATOM    114  CA  ARG   114     -12.912  40.416  23.715  1.00 25.00           C
ATOM    115  CA  ARG   115     -13.134  43.817  21.970  1.00 25.00           C
ATOM    116  CA  LEU   116     -13.985  42.590  18.539  1.00 25.00           C
ATOM    117  CA  THR   117     -10.459  43.478  17.467  1.00 25.00           C
ATOM    118  CA  THR   118      -9.340  40.132  18.788  1.00 25.00           C
ATOM    119  CA  SER   119      -7.166  38.411  16.096  1.00 25.00           C
ATOM    120  CA  TYR   120      -3.565  38.055  15.029  1.00 25.00           C
ATOM    121  CA  LEU   121      -0.840  37.399  17.518  1.00 25.00           C
ATOM    122  CA  TYR   122      -2.588  38.102  20.874  1.00 25.00           C
ATOM    123  CA  PHE   123      -1.276  35.954  23.745  1.00 25.00           C
ATOM    124  CA  ARG   124       1.349  34.633  26.227  1.00 25.00           C
ATOM    125  CA  ILE   125       2.349  31.614  28.233  1.00 25.00           C
ATOM    126  CA  SER   126       3.744  30.939  31.655  1.00 25.00           C
ATOM    127  CA  PRO   127       3.687  27.161  32.365  1.00 25.00           C
ATOM    128  CA  ARG   128       3.927  23.634  30.891  1.00 25.00           C
ATOM    129  CA  ARG   129       3.344  25.036  27.376  1.00 25.00           C
ATOM    130  CA  VAL   130       6.080  27.656  27.940  1.00 25.00           C
ATOM    131  CA  GLN   131       8.485  24.924  29.132  1.00 25.00           C
ATOM    132  CA  ALA   132       7.687  22.833  26.024  1.00 25.00           C
ATOM    133  CA  TRP   133       8.332  25.871  23.784  1.00 25.00           C
ATOM    134  CA  ARG   134      11.678  26.488  25.540  1.00 25.00           C
ATOM    135  CA  GLU   135      12.644  22.815  25.042  1.00 25.00           C
ATOM    136  CA  ALA   136      11.735  23.055  21.330  1.00 25.00           C
ATOM    137  CA  ASN   137      13.858  26.224  20.989  1.00 25.00           C
ATOM    138  CA  GLU   138      16.803  24.464  22.691  1.00 25.00           C
ATOM    139  CA  LEU   139      16.430  21.486  20.312  1.00 25.00           C
ATOM    140  CA  SER   140      16.388  23.860  17.307  1.00 25.00           C
ATOM    141  CA  GLY   141      19.548  25.594  18.601  1.00 25.00           C
ATOM    142  CA  ARG   142      21.266  22.198  19.027  1.00 25.00           C
ATOM    143  CA  GLU   143      20.282  21.224  15.456  1.00 25.00           C
ATOM    144  CA  LEU   144      21.678  24.538  14.141  1.00 25.00           C
ATOM    145  CA  MET   145      18.352  26.324  13.608  1.00 25.00           C
ATOM    146  CA  ARG   146      20.556  29.053  12.136  1.00 25.00           C
ATOM    147  CA  ASP   147      19.705  27.356   8.858  1.00 25.00           C
ATOM    148  CA  GLY   148      16.375  29.203   8.811  1.00 25.00           C
ATOM    149  CA  GLU   149      12.854  29.047  10.125  1.00 25.00           C
ATOM    150  CA  TRP   150       9.193  29.758   9.753  1.00 25.00           C
ATOM    151  CA  LEU   151       8.443  30.846  13.312  1.00 25.00           C
ATOM    152  CA  VAL   152       7.852  33.085  16.384  1.00 25.00           C
ATOM    153  CA  THR   153      11.117  32.307  18.139  1.00 25.00           C
ATOM    154  CA  ASP   154      13.022  34.461  20.658  1.00 25.00           C
TER
END
