
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0370TS393_4-D1
# Molecule2: number of CA atoms  144 ( 1104),  selected  144 , name T0370_D1.pdb
# PARAMETERS: T0370TS393_4-D1.T0370_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        58 - 86          4.86    20.22
  LONGEST_CONTINUOUS_SEGMENT:    29        59 - 87          4.89    20.35
  LCS_AVERAGE:     14.18

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          1.77    19.90
  LCS_AVERAGE:      5.25

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         8 - 21          0.35    19.69
  LCS_AVERAGE:      3.58

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     T       8     T       8     14   15   23     8   14   14   15   15   16   16   18   23   26   30   34   38   41   42   46   51   57   61   62 
LCS_GDT     A       9     A       9     14   15   23    13   14   14   15   15   16   16   18   20   26   30   36   38   41   42   48   52   57   61   62 
LCS_GDT     K      10     K      10     14   15   23    13   14   14   15   15   16   16   18   20   24   30   36   38   41   44   49   52   57   61   62 
LCS_GDT     Q      11     Q      11     14   15   23    13   14   14   15   15   16   16   18   23   26   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     R      12     R      12     14   15   23    13   14   14   15   15   16   16   20   23   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     I      13     I      13     14   15   23    13   14   14   15   15   16   16   20   23   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     Q      14     Q      14     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     D      15     D      15     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     T      16     T      16     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     L      17     L      17     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     N      18     N      18     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     R      19     R      19     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     L      20     L      20     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     E      21     E      21     14   15   23    13   14   14   15   15   16   18   20   23   29   33   36   38   41   46   49   52   57   61   62 
LCS_GDT     L      22     L      22      3   15   23     3    4    4    5    7   11   15   19   22   29   33   36   38   43   46   49   52   55   58   60 
LCS_GDT     D      23     D      23      4    4   23     3    4    4    5    6    9   11   18   22   22   25   32   34   41   46   49   52   55   58   60 
LCS_GDT     V      24     V      24      4    4   23     3    4    5    8    9   13   15   18   22   23   30   35   36   41   43   49   52   55   58   60 
LCS_GDT     D      25     D      25      4    4   23     3    4    5    8    9   13   14   15   21   22   25   30   35   43   46   49   52   55   58   60 
LCS_GDT     A      26     A      26      4    4   23     3    3    6    7    7    8   11   14   17   19   21   27   30   33   37   40   48   55   58   60 
LCS_GDT     W      27     W      27      3    3   23     3    4    6    7    7    8   10   14   17   19   21   27   30   32   35   39   43   47   50   59 
LCS_GDT     V      28     V      28      3    5   23     3    4    6    7    7    8   10   14   17   19   21   27   30   32   35   39   43   50   53   60 
LCS_GDT     S      29     S      29      3    5   23     3    4    4    5    7    8   11   14   17   19   21   24   30   32   33   36   41   47   54   60 
LCS_GDT     T      30     T      30      3    5   23     3    3    3    4    9    9   11   13   17   17   19   22   24   29   32   35   41   47   54   60 
LCS_GDT     A      31     A      31      4    5   20     3    3    4    4    5    6   11   12   14   14   19   22   24   29   32   35   38   46   51   60 
LCS_GDT     G      32     G      32      4    5   20     3    3    4    7    9   10   10   12   14   17   19   22   24   29   32   34   38   46   54   60 
LCS_GDT     A      33     A      33      4    7   20     3    3    4    6    8    8   11   12   14   17   19   21   24   29   32   35   42   47   54   60 
LCS_GDT     D      34     D      34      4    7   20     3    3    5    6    8   10   11   12   14   17   19   21   24   29   32   35   41   47   54   60 
LCS_GDT     G      35     G      35      4    7   20     3    4    5    6    8    8   11   12   14   17   19   21   24   29   32   35   41   47   54   60 
LCS_GDT     G      36     G      36      4    7   20     3    4    5    5    7    8   11   12   14   17   18   21   24   29   32   35   41   47   53   60 
LCS_GDT     A      37     A      37      4    7   20     3    4    5    6    7    8   11   12   14   17   19   21   23   29   32   35   38   46   51   58 
LCS_GDT     P      38     P      38      4    7   20     0    4    5    6    7    8   11   12   14   17   19   21   23   29   32   35   38   46   51   60 
LCS_GDT     Y      39     Y      39      3    7   20     3    3    5    6    7    8   11   12   14   17   19   21   24   29   32   35   41   46   51   58 
LCS_GDT     L      40     L      40      5    7   20     3    4    5    6    9   13   14   15   19   20   22   27   30   34   40   44   48   53   57   60 
LCS_GDT     V      41     V      41      5    7   20     3    3    5    6    8    8   11   12   15   20   22   27   34   38   42   45   49   53   58   60 
LCS_GDT     P      42     P      42      5    7   20     3    4    5    6    8   10   13   18   23   24   27   31   35   38   42   45   47   51   57   60 
LCS_GDT     L      43     L      43      5    7   20     3    4    5    9   11   15   18   21   23   24   27   31   35   38   42   45   49   55   58   60 
LCS_GDT     S      44     S      44      5    7   20     3    4    6    8   11   15   18   21   23   24   27   31   35   38   42   45   46   51   55   60 
LCS_GDT     Y      45     Y      45      4    8   20     1    4    6    8   11   15   18   21   23   24   27   31   35   40   42   48   52   57   61   62 
LCS_GDT     L      46     L      46      4    8   20     2    4    4    7    9   13   18   21   23   24   26   29   32   37   40   47   52   57   61   62 
LCS_GDT     W      47     W      47      4    8   20     1    3    5    7    9   10   14   16   21   22   26   30   38   43   46   49   52   57   61   62 
LCS_GDT     D      48     D      48      4    8   20     3    4    5    7    9   10   12   13   17   20   26   30   38   43   46   49   52   55   58   60 
LCS_GDT     G      49     G      49      4    8   20     3    4    5    7    9   11   12   13   17   22   26   29   38   43   46   49   52   55   58   60 
LCS_GDT     E      50     E      50      4    8   20     3    4    5    7    9   10   14   19   22   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     T      51     T      51      5    9   20     3    4    6    7   12   12   18   20   22   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     F      52     F      52      5    9   20     3    4    6    7   12   12   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     L      53     L      53      5    9   20     3    4    6    7   12   12   18   21   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     V      54     V      54      5    9   20     3    4    6    9   12   15   18   21   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     A      55     A      55      5    9   20     3    4    6    9   12   15   18   21   23   29   33   36   38   41   44   48   52   57   61   62 
LCS_GDT     T      56     T      56      4    9   20     3    4    6    9   11   15   18   21   23   24   27   36   38   43   46   49   52   57   61   62 
LCS_GDT     P      57     P      57      4    9   20     3    4    6    7   12   12   18   21   23   29   33   36   38   41   45   49   52   57   61   62 
LCS_GDT     A      58     A      58      4    9   29     3    4    5    9   11   15   18   21   23   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     A      59     A      59      4    9   29     3    4    4    7   12   15   18   21   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     S      60     S      60      4    6   29     3    4    5    7    9   12   17   20   23   24   27   31   38   43   46   49   52   57   61   62 
LCS_GDT     P      61     P      61      4    6   29     3    4    5    5    7   10   12   16   21   23   26   29   38   43   46   49   52   55   61   62 
LCS_GDT     T      62     T      62      3    6   29     3    4    5    5    5    6    7   10   11   12   15   16   21   30   36   40   43   49   53   62 
LCS_GDT     G      63     G      63      3    6   29     0    3    5    5    5    6    9   13   14   20   22   26   28   30   35   39   51   57   61   62 
LCS_GDT     R      64     R      64      3    6   29     1    3    3    6    9   12   16   18   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     N      65     N      65      3    5   29     3    3    3    5    9   12   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     L      66     L      66      3    4   29     3    3    4    5    9   12   18   20   23   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     S      67     S      67      3    5   29     3    3    5    5    7   10   14   17   21   24   27   35   38   43   46   49   52   55   58   60 
LCS_GDT     E      68     E      68      3    7   29     3    3    5    7   12   12   16   19   22   29   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     T      69     T      69      6    7   29     3    4    6    8    9   11   14   16   22   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     G      70     G      70      6    7   29     3    4    6    6    9   11   16   16   19   29   33   36   38   41   45   49   52   57   61   62 
LCS_GDT     R      71     R      71      6    8   29     3    4    6    7    9   13   16   18   21   29   33   36   38   43   46   49   52   55   61   62 
LCS_GDT     V      72     V      72      6    8   29     3    4    6    7   12   14   16   18   22   27   33   36   38   43   46   49   52   55   61   62 
LCS_GDT     R      73     R      73      6    8   29     3    4    6    7    9   13   16   18   22   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     L      74     L      74      6    8   29     3    4    6    7    9   13   16   18   22   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     G      75     G      75      4    8   29     4    4    5    7    9   13   16   18   21   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     I      76     I      76      4    8   29     4    4    5    6    9   13   16   18   21   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     G      77     G      77      4    8   29     4    4    5    7    9   13   16   18   21   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     P      78     P      78      4    8   29     4    4    5    6    9   12   16   18   21   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     T      79     T      79      4    6   29     3    4    4    6    9   12   16   18   21   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     R      80     R      80      4    6   29     3    4    4    6    6    9   11   14   17   21   25   29   38   43   46   49   52   55   58   60 
LCS_GDT     D      81     D      81      4    6   29     1    3    4    6    6    8   11   14   17   22   24   29   38   43   46   49   52   55   58   60 
LCS_GDT     L      82     L      82      4    5   29     1    4    5    7    9   11   14   16   19   22   25   30   38   43   46   49   52   55   58   60 
LCS_GDT     V      83     V      83      4    5   29     3    4    5    7    9   11   14   18   21   24   26   31   38   43   46   49   52   55   58   60 
LCS_GDT     L      84     L      84      4    5   29     3    4    5    7    9   11   15   18   22   24   26   31   38   43   46   49   52   55   58   60 
LCS_GDT     V      85     V      85      4    5   29     3    4    5   11   12   16   16   18   22   24   33   36   38   43   46   49   52   57   61   62 
LCS_GDT     E      86     E      86      3    5   29     3    3    4   15   15   16   16   18   22   24   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     G      87     G      87      3    4   29     3    4    5   15   15   15   15   16   19   20   27   31   38   43   46   49   52   55   58   60 
LCS_GDT     T      88     T      88      3    4   26     3    4    5    7    9   13   14   15   19   20   25   29   34   43   46   49   52   55   58   60 
LCS_GDT     A      89     A      89      3    5   18     3    3    5    5    9   13   14   15   19   20   22   26   29   34   40   44   49   55   57   60 
LCS_GDT     L      90     L      90      4    7   18     3    4    6    6    8   10   14   15   19   20   22   27   32   34   40   46   49   55   58   60 
LCS_GDT     P      91     P      91      4    7   18     3    4    4    5    8   10   12   15   16   18   20   22   28   33   37   38   42   47   49   54 
LCS_GDT     L      92     L      92      5    7   18     3    4    5    6    8   11   13   15   17   18   22   25   28   33   37   37   40   43   48   50 
LCS_GDT     E      93     E      93      5    7   18     3    4    5    6    8   11   13   15   17   18   22   25   28   33   37   37   38   43   45   50 
LCS_GDT     P      94     P      94      5    7   18     3    4    5    6    8   11   13   15   17   18   22   25   28   33   37   37   40   43   45   50 
LCS_GDT     A      95     A      95      5    7   18     3    4    5    6    8   11   13   15   17   18   22   25   28   33   37   37   40   43   45   50 
LCS_GDT     G      96     G      96      5    7   18     3    3    5    8    9   11   13   15   17   18   22   25   28   33   37   37   40   43   45   50 
LCS_GDT     L      97     L      97      3    7   18     4    4    5    8    9   11   13   15   17   18   22   25   28   33   37   37   41   43   49   54 
LCS_GDT     P      98     P      98      5    7   18     3    5    6    6    6    9   12   15   17   18   22   25   28   33   37   37   41   46   51   57 
LCS_GDT     D      99     D      99      5    7   18     4    5    6    8    9   11   13   15   17   18   22   25   28   33   37   37   41   47   54   60 
LCS_GDT     G     100     G     100      5    7   18     4    5    6    8   11   13   15   21   23   24   26   28   31   36   38   44   46   49   54   60 
LCS_GDT     V     101     V     101      5    7   18     4    5    6    8   11   13   15   21   23   24   26   28   31   37   39   44   46   51   56   61 
LCS_GDT     G     102     G     102      5    7   18     4    5    6    6    9    9   10   11   16   18   22   25   28   32   37   38   42   47   54   60 
LCS_GDT     D     103     D     103      4    5   18     3    3    4    6    8   11   13   15   17   20   24   26   28   33   37   38   42   47   50   58 
LCS_GDT     T     104     T     104      4    5   18     3    3    6    8   11   15   18   21   23   24   26   29   32   37   40   44   46   53   56   61 
LCS_GDT     F     105     F     105      4    5   18     0    3    5    8   11   15   18   21   23   24   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     A     106     A     106      3    5   18     0    3    5    9   11   13   18   20   22   24   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     E     107     E     107      3    4   17     3    3    5    5    7    8   10   16   19   24   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     K     108     K     108      5    6   17     3    4    4    5    8    8    9   12   13   17   19   26   29   32   41   46   51   57   61   62 
LCS_GDT     T     109     T     109      5    6   17     3    4    4    5    8    8    9   12   13   17   21   27   29   35   42   46   51   57   61   62 
LCS_GDT     G     110     G     110      5    7   16     3    4    4    5    8    8    9   12   13   17   21   27   30   32   42   46   51   57   61   62 
LCS_GDT     F     111     F     111      5    7   16     3    4    4    5    8    8    9   12   13   17   21   27   29   32   41   46   51   57   61   62 
LCS_GDT     D     112     D     112      5    7   16     3    3    4    5    8    8    9   12   13   17   19   26   29   35   42   46   51   57   61   62 
LCS_GDT     P     113     P     113      4    7   16     3    4    4    5    8    8   10   12   14   19   25   28   35   38   42   46   51   57   61   62 
LCS_GDT     R     114     R     114      4    7   16     3    4    4    5    8    8   12   16   19   22   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     R     115     R     115      4    7   16     3    4    4    5    7    8   10   14   23   24   30   32   33   38   42   46   51   57   61   62 
LCS_GDT     L     116     L     116      4    7   16     3    4    4    6    7    8   10   16   23   25   30   32   35   40   42   46   51   57   61   62 
LCS_GDT     T     117     T     117      4    8   16     3    3    5    7    9   12   14   16   21   22   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     T     118     T     118      5    8   16     3    4    5    6    7   10   14   16   21   22   26   29   30   36   41   46   51   57   61   62 
LCS_GDT     S     119     S     119      5    8   16     3    4    5    6    7    8   13   15   18   21   25   26   28   32   37   42   46   49   55   61 
LCS_GDT     Y     120     Y     120      5    8   16     3    4    5    6    8   10   14   16   21   22   26   31   35   40   42   46   51   57   61   62 
LCS_GDT     L     121     L     121      5    8   16     3    4    5    6    8    9   14   16   21   22   27   31   35   38   42   46   51   57   61   62 
LCS_GDT     Y     122     Y     122      5    8   16     1    3    5    6    8   10   18   20   23   29   33   36   38   41   42   46   51   57   61   62 
LCS_GDT     F     123     F     123      4    8   14     4    4    5    6    8   11   15   18   22   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     R     124     R     124      4    8   14     4    4    5    6    8   12   16   17   22   29   33   36   38   41   44   49   52   57   61   62 
LCS_GDT     I     125     I     125      4    8   14     4    4    5    6    9   12   16   17   19   24   30   33   38   41   44   49   52   57   61   62 
LCS_GDT     S     126     S     126      4    8   14     4    4    5    6    7    9   10   13   16   20   22   25   28   30   38   43   48   51   54   62 
LCS_GDT     P     127     P     127      3    8   14     3    4    5    6    8    9   10   10   13   15   20   23   27   30   36   40   42   45   47   54 
LCS_GDT     R     128     R     128      3    8   14     3    4    5    5    7    9   10   11   14   17   21   28   33   37   42   46   51   57   61   62 
LCS_GDT     R     129     R     129      3    4   13     3    4    5    5    5   11   12   15   16   18   21   24   28   30   33   40   46   54   61   62 
LCS_GDT     V     130     V     130      3    4   13     0    3    5    7    8   11   12   15   15   18   20   22   24   27   33   38   42   46   53   59 
LCS_GDT     Q     131     Q     131      3    3   13     0    3    3    5    8   11   12   15   15   16   19   21   24   27   31   35   43   49   55   59 
LCS_GDT     A     132     A     132      3    3   13     0    3    3    3    3    6    6    7    8   11   13   21   24   27   30   36   44   49   55   60 
LCS_GDT     W     133     W     133      3    4   14     0    3    4    4    4    6    6    7    8   10   16   16   21   23   28   33   41   47   55   60 
LCS_GDT     R     134     R     134      3    8   14     1    3    3    5    5    6    9   10   10   12   16   16   18   23   30   35   41   46   53   60 
LCS_GDT     E     135     E     135      6    9   14     4    5    7    8    9    9    9   10   10   12   17   22   23   25   31   35   41   47   54   60 
LCS_GDT     A     136     A     136      6    9   14     4    5    7    8    9    9    9   10   10   10   12   19   21   23   26   30   33   43   48   51 
LCS_GDT     N     137     N     137      6    9   14     4    5    7    8    9    9    9   10   10   10   11   13   18   19   24   27   33   35   38   50 
LCS_GDT     E     138     E     138      6    9   14     4    5    7    8    9    9    9   10   13   14   19   21   24   27   31   35   41   48   55   60 
LCS_GDT     L     139     L     139      6    9   14     4    5    7    8    9    9    9   10   11   13   19   23   25   29   37   44   46   51   55   60 
LCS_GDT     S     140     S     140      6    9   14     4    5    7    8    9    9    9   10   10   12   15   19   21   24   27   35   39   47   53   60 
LCS_GDT     G     141     G     141      5    9   14     3    5    5    8    9   10   12   14   15   16   17   20   23   29   31   38   46   49   55   60 
LCS_GDT     R     142     R     142      5    9   14     4    5    7    8   11   15   18   21   23   24   27   30   35   38   42   45   46   51   55   60 
LCS_GDT     E     143     E     143      3    9   14     3    4    5    9   11   15   18   21   23   24   27   31   35   38   42   45   46   51   55   60 
LCS_GDT     L     144     L     144      3    7   14     3    3    4    5    6   14   18   21   23   24   27   30   35   38   42   45   46   51   55   60 
LCS_GDT     M     145     M     145      4    5   14     3    4    6    9   11   15   18   21   23   24   27   31   35   38   42   45   46   51   55   60 
LCS_GDT     R     146     R     146      4    5   14     3    4    6    8   11   15   18   21   23   24   27   31   35   38   42   45   46   51   55   60 
LCS_GDT     D     147     D     147      4    5   13     3    3    5    9   11   15   18   21   23   24   27   31   35   38   42   45   46   51   55   60 
LCS_GDT     G     148     G     148      4    5   12     3    3    4    5   10   12   18   20   22   24   27   31   35   38   42   45   46   51   55   59 
LCS_GDT     E     149     E     149      4    5   12     3    3    4    4    5    6    7   12   14   17   21   24   26   29   34   40   44   51   55   59 
LCS_GDT     W     150     W     150      4    5   12     3    3    4    4    7    8   10   14   15   16   18   20   22   27   31   35   44   49   53   59 
LCS_GDT     L     151     L     151      4    5   12     3    3    4    4    5    6    6    8   15   16   17   19   22   26   31   35   40   43   50   53 
LCS_AVERAGE  LCS_A:   7.67  (   3.58    5.25   14.18 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     14     14     15     15     16     18     21     23     29     33     36     38     43     46     49     52     57     61     62 
GDT PERCENT_CA   9.03   9.72   9.72  10.42  10.42  11.11  12.50  14.58  15.97  20.14  22.92  25.00  26.39  29.86  31.94  34.03  36.11  39.58  42.36  43.06
GDT RMS_LOCAL    0.23   0.35   0.35   0.67   0.67   1.01   2.57   2.88   3.02   3.55   3.81   6.68   4.91   5.23   5.42   5.62   5.84   6.37   7.76   7.79
GDT RMS_ALL_CA  19.64  19.69  19.69  19.71  19.71  19.32  15.19  15.12  15.12  18.79  18.83  18.94  20.43  20.45  20.46  20.40  20.43  17.41  17.32  17.32

#      Molecule1      Molecule2       DISTANCE
LGA    T       8      T       8         19.725
LGA    A       9      A       9         20.357
LGA    K      10      K      10         15.660
LGA    Q      11      Q      11         12.505
LGA    R      12      R      12         15.489
LGA    I      13      I      13         12.794
LGA    Q      14      Q      14          7.863
LGA    D      15      D      15         10.775
LGA    T      16      T      16         11.859
LGA    L      17      L      17          6.765
LGA    N      18      N      18          8.848
LGA    R      19      R      19         13.193
LGA    L      20      L      20         10.234
LGA    E      21      E      21         10.431
LGA    L      22      L      22         12.860
LGA    D      23      D      23         17.185
LGA    V      24      V      24         18.097
LGA    D      25      D      25         15.759
LGA    A      26      A      26         16.649
LGA    W      27      W      27         20.783
LGA    V      28      V      28         16.317
LGA    S      29      S      29         15.179
LGA    T      30      T      30         16.734
LGA    A      31      A      31         19.653
LGA    G      32      G      32         18.152
LGA    A      33      A      33         14.352
LGA    D      34      D      34         16.263
LGA    G      35      G      35         15.084
LGA    G      36      G      36         16.226
LGA    A      37      A      37         15.789
LGA    P      38      P      38         13.488
LGA    Y      39      Y      39         14.259
LGA    L      40      L      40         10.493
LGA    V      41      V      41          7.652
LGA    P      42      P      42          4.651
LGA    L      43      L      43          2.511
LGA    S      44      S      44          2.052
LGA    Y      45      Y      45          1.978
LGA    L      46      L      46          2.977
LGA    W      47      W      47          7.592
LGA    D      48      D      48         14.577
LGA    G      49      G      49         17.761
LGA    E      50      E      50         16.281
LGA    T      51      T      51         10.709
LGA    F      52      F      52          4.730
LGA    L      53      L      53          3.909
LGA    V      54      V      54          1.138
LGA    A      55      A      55          2.928
LGA    T      56      T      56          2.593
LGA    P      57      P      57          3.607
LGA    A      58      A      58          3.436
LGA    A      59      A      59          3.663
LGA    S      60      S      60          4.614
LGA    P      61      P      61          8.523
LGA    T      62      T      62         14.947
LGA    G      63      G      63         15.498
LGA    R      64      R      64         15.467
LGA    N      65      N      65         17.594
LGA    L      66      L      66         16.083
LGA    S      67      S      67         20.370
LGA    E      68      E      68         21.374
LGA    T      69      T      69         19.116
LGA    G      70      G      70         16.700
LGA    R      71      R      71         18.632
LGA    V      72      V      72         15.187
LGA    R      73      R      73         17.301
LGA    L      74      L      74         16.364
LGA    G      75      G      75         16.963
LGA    I      76      I      76         20.212
LGA    G      77      G      77         26.171
LGA    P      78      P      78         30.351
LGA    T      79      T      79         34.422
LGA    R      80      R      80         32.674
LGA    D      81      D      81         25.836
LGA    L      82      L      82         19.883
LGA    V      83      V      83         16.742
LGA    L      84      L      84         18.935
LGA    V      85      V      85         17.931
LGA    E      86      E      86         22.033
LGA    G      87      G      87         21.265
LGA    T      88      T      88         23.399
LGA    A      89      A      89         20.327
LGA    L      90      L      90         22.658
LGA    P      91      P      91         24.101
LGA    L      92      L      92         21.655
LGA    E      93      E      93         23.804
LGA    P      94      P      94         20.477
LGA    A      95      A      95         19.897
LGA    G      96      G      96         18.157
LGA    L      97      L      97         13.013
LGA    P      98      P      98         14.546
LGA    D      99      D      99          8.850
LGA    G     100      G     100          3.831
LGA    V     101      V     101          3.784
LGA    G     102      G     102          7.749
LGA    D     103      D     103          6.534
LGA    T     104      T     104          1.044
LGA    F     105      F     105          2.534
LGA    A     106      A     106          6.458
LGA    E     107      E     107         11.209
LGA    K     108      K     108         16.011
LGA    T     109      T     109         16.451
LGA    G     110      G     110         17.347
LGA    F     111      F     111         16.264
LGA    D     112      D     112         14.362
LGA    P     113      P     113         11.656
LGA    R     114      R     114         11.759
LGA    R     115      R     115         16.025
LGA    L     116      L     116         13.275
LGA    T     117      T     117          8.360
LGA    T     118      T     118          9.430
LGA    S     119      S     119          8.487
LGA    Y     120      Y     120          7.193
LGA    L     121      L     121          7.327
LGA    Y     122      Y     122          8.423
LGA    F     123      F     123          8.554
LGA    R     124      R     124         13.037
LGA    I     125      I     125         13.420
LGA    S     126      S     126         20.219
LGA    P     127      P     127         21.155
LGA    R     128      R     128         22.074
LGA    R     129      R     129         18.653
LGA    V     130      V     130         16.475
LGA    Q     131      Q     131         15.077
LGA    A     132      A     132         13.408
LGA    W     133      W     133         15.530
LGA    R     134      R     134         15.750
LGA    E     135      E     135         14.522
LGA    A     136      A     136         17.458
LGA    N     137      N     137         19.400
LGA    E     138      E     138         12.862
LGA    L     139      L     139         10.449
LGA    S     140      S     140         13.675
LGA    G     141      G     141         10.043
LGA    R     142      R     142          3.313
LGA    E     143      E     143          2.646
LGA    L     144      L     144          3.974
LGA    M     145      M     145          1.571
LGA    R     146      R     146          0.849
LGA    D     147      D     147          3.837
LGA    G     148      G     148          6.317
LGA    E     149      E     149         10.270
LGA    W     150      W     150         14.542
LGA    L     151      L     151         16.561

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0     21    2.88    17.188    13.720     0.704

LGA_LOCAL      RMSD =  2.882  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.120  Number of atoms =  144 
Std_ALL_ATOMS  RMSD = 13.929  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.488354 * X  +  -0.805298 * Y  +   0.336163 * Z  +   1.011051
  Y_new =  -0.105263 * X  +  -0.328049 * Y  +  -0.938778 * Z  +  34.617661
  Z_new =   0.866274 * X  +  -0.493841 * Y  +   0.075436 * Z  +  18.765686 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.419214    1.722378  [ DEG:   -81.3150     98.6850 ]
  Theta =  -1.047695   -2.093898  [ DEG:   -60.0285   -119.9715 ]
  Phi   =  -2.929295    0.212298  [ DEG:  -167.8362     12.1638 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS393_4-D1                               
REMARK     2: T0370_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS393_4-D1.T0370_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0   21   2.88  13.720    13.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS393_4-D1
PFRMAT TS
TARGET T0370
MODEL 4
PARENT N/A
ATOM      8  CA  THR     8      17.792  46.623  18.979  1.00 25.00           C
ATOM      9  CA  ALA     9      14.828  44.902  17.270  1.00 25.00           C
ATOM     10  CA  LYS    10      15.939  41.523  18.691  1.00 25.00           C
ATOM     11  CA  GLN    11      16.209  43.056  22.190  1.00 25.00           C
ATOM     12  CA  ARG    12      12.697  44.540  21.838  1.00 25.00           C
ATOM     13  CA  ILE    13      11.338  41.130  20.744  1.00 25.00           C
ATOM     14  CA  GLN    14      13.015  39.468  23.760  1.00 25.00           C
ATOM     15  CA  ASP    15      11.483  42.093  26.090  1.00 25.00           C
ATOM     16  CA  THR    16       8.031  41.482  24.550  1.00 25.00           C
ATOM     17  CA  LEU    17       8.454  37.707  25.038  1.00 25.00           C
ATOM     18  CA  ASN    18       9.451  38.267  28.693  1.00 25.00           C
ATOM     19  CA  ARG    19       6.374  40.485  29.218  1.00 25.00           C
ATOM     20  CA  LEU    20       4.138  37.792  27.665  1.00 25.00           C
ATOM     21  CA  GLU    21       5.684  35.147  29.963  1.00 25.00           C
ATOM     22  CA  LEU    22       7.594  33.106  27.320  1.00 25.00           C
ATOM     23  CA  ASP    23       8.532  30.649  30.105  1.00 25.00           C
ATOM     24  CA  VAL    24       4.720  30.200  29.847  1.00 25.00           C
ATOM     25  CA  ASP    25       4.090  29.638  26.110  1.00 25.00           C
ATOM     26  CA  ALA    26       3.138  25.992  26.795  1.00 25.00           C
ATOM     27  CA  TRP    27       0.729  27.113  29.554  1.00 25.00           C
ATOM     28  CA  VAL    28      -0.850  29.663  27.172  1.00 25.00           C
ATOM     29  CA  SER    29      -1.263  26.950  24.501  1.00 25.00           C
ATOM     30  CA  THR    30      -2.909  24.635  27.071  1.00 25.00           C
ATOM     31  CA  ALA    31      -0.683  22.240  28.959  1.00 25.00           C
ATOM     32  CA  GLY    32      -2.038  19.267  26.904  1.00 25.00           C
ATOM     33  CA  ALA    33      -4.801  20.550  24.574  1.00 25.00           C
ATOM     34  CA  ASP    34      -5.314  16.905  23.869  1.00 25.00           C
ATOM     35  CA  GLY    35      -2.372  17.344  21.430  1.00 25.00           C
ATOM     36  CA  GLY    36      -3.673  20.018  19.060  1.00 25.00           C
ATOM     37  CA  ALA    37      -1.571  23.168  19.422  1.00 25.00           C
ATOM     38  CA  PRO    38       1.219  25.285  18.092  1.00 25.00           C
ATOM     39  CA  TYR    39      -0.595  28.280  19.529  1.00 25.00           C
ATOM     40  CA  LEU    40      -1.341  29.020  15.845  1.00 25.00           C
ATOM     41  CA  VAL    41      -0.759  32.297  13.968  1.00 25.00           C
ATOM     42  CA  PRO    42       2.971  32.869  13.145  1.00 25.00           C
ATOM     43  CA  LEU    43       1.516  36.274  14.053  1.00 25.00           C
ATOM     44  CA  SER    44       3.066  39.707  14.601  1.00 25.00           C
ATOM     45  CA  TYR    45       2.334  38.919  18.228  1.00 25.00           C
ATOM     46  CA  LEU    46       5.513  39.439  20.278  1.00 25.00           C
ATOM     47  CA  TRP    47       7.349  40.461  17.126  1.00 25.00           C
ATOM     48  CA  ASP    48       8.510  41.640  13.681  1.00 25.00           C
ATOM     49  CA  GLY    49      10.225  39.392  11.065  1.00 25.00           C
ATOM     50  CA  GLU    50       9.344  36.257  13.099  1.00 25.00           C
ATOM     51  CA  THR    51       8.295  35.119  16.584  1.00 25.00           C
ATOM     52  CA  PHE    52       4.966  34.128  18.226  1.00 25.00           C
ATOM     53  CA  LEU    53       1.314  33.068  18.125  1.00 25.00           C
ATOM     54  CA  VAL    54      -2.270  34.313  17.770  1.00 25.00           C
ATOM     55  CA  ALA    55      -4.973  31.893  16.724  1.00 25.00           C
ATOM     56  CA  THR    56      -5.621  31.280  13.069  1.00 25.00           C
ATOM     57  CA  PRO    57      -8.948  29.582  12.425  1.00 25.00           C
ATOM     58  CA  ALA    58     -12.377  28.701  11.129  1.00 25.00           C
ATOM     59  CA  ALA    59     -14.374  29.489   7.941  1.00 25.00           C
ATOM     60  CA  SER    60     -11.604  30.045   5.344  1.00 25.00           C
ATOM     61  CA  PRO    61     -12.392  28.465   1.974  1.00 25.00           C
ATOM     62  CA  THR    62     -14.439  31.369   0.538  1.00 25.00           C
ATOM     63  CA  GLY    63     -16.678  33.578   2.689  1.00 25.00           C
ATOM     64  CA  ARG    64     -15.571  36.184   5.187  1.00 25.00           C
ATOM     65  CA  ASN    65     -11.861  37.223   5.108  1.00 25.00           C
ATOM     66  CA  LEU    66      -8.984  37.208   7.587  1.00 25.00           C
ATOM     67  CA  SER    67      -7.377  39.684   5.184  1.00 25.00           C
ATOM     68  CA  GLU    68      -4.945  37.134   3.618  1.00 25.00           C
ATOM     69  CA  THR    69      -3.944  35.424   6.874  1.00 25.00           C
ATOM     70  CA  GLY    70      -2.132  35.384  10.199  1.00 25.00           C
ATOM     71  CA  ARG    71      -3.753  38.301  11.994  1.00 25.00           C
ATOM     72  CA  VAL    72      -5.634  36.483  14.739  1.00 25.00           C
ATOM     73  CA  ARG    73      -6.817  35.673  18.238  1.00 25.00           C
ATOM     74  CA  LEU    74      -5.743  35.000  21.835  1.00 25.00           C
ATOM     75  CA  GLY    75      -3.217  32.261  22.452  1.00 25.00           C
ATOM     76  CA  ILE    76      -5.509  29.610  24.050  1.00 25.00           C
ATOM     77  CA  GLY    77      -6.154  28.987  27.733  1.00 25.00           C
ATOM     78  CA  PRO    78      -4.399  30.002  30.996  1.00 25.00           C
ATOM     79  CA  THR    79      -5.908  33.461  31.733  1.00 25.00           C
ATOM     80  CA  ARG    80      -5.099  35.466  28.643  1.00 25.00           C
ATOM     81  CA  ASP    81      -2.011  35.143  26.398  1.00 25.00           C
ATOM     82  CA  LEU    82       1.424  34.184  25.172  1.00 25.00           C
ATOM     83  CA  VAL    83       0.314  36.033  22.061  1.00 25.00           C
ATOM     84  CA  LEU    84      -1.942  38.340  20.015  1.00 25.00           C
ATOM     85  CA  VAL    85      -1.673  39.917  16.528  1.00 25.00           C
ATOM     86  CA  GLU    86      -5.437  40.442  17.002  1.00 25.00           C
ATOM     87  CA  GLY    87      -4.800  42.482  20.153  1.00 25.00           C
ATOM     88  CA  THR    88      -3.355  45.151  17.833  1.00 25.00           C
ATOM     89  CA  ALA    89       0.500  44.932  17.782  1.00 25.00           C
ATOM     90  CA  LEU    90      -0.072  45.736  14.091  1.00 25.00           C
ATOM     91  CA  PRO    91      -0.936  49.459  14.134  1.00 25.00           C
ATOM     92  CA  LEU    92      -4.618  49.847  15.008  1.00 25.00           C
ATOM     93  CA  GLU    93      -4.662  53.624  15.458  1.00 25.00           C
ATOM     94  CA  PRO    94      -2.422  53.940  18.479  1.00 25.00           C
ATOM     95  CA  ALA    95      -4.875  53.590  21.306  1.00 25.00           C
ATOM     96  CA  GLY    96      -5.125  49.774  21.766  1.00 25.00           C
ATOM     97  CA  LEU    97      -4.185  47.684  24.749  1.00 25.00           C
ATOM     98  CA  PRO    98      -4.218  50.243  27.558  1.00 25.00           C
ATOM     99  CA  ASP    99      -5.734  48.517  30.608  1.00 25.00           C
ATOM    100  CA  GLY   100      -4.016  45.735  32.416  1.00 25.00           C
ATOM    101  CA  VAL   101      -3.923  43.324  29.508  1.00 25.00           C
ATOM    102  CA  GLY   102      -0.184  43.110  30.033  1.00 25.00           C
ATOM    103  CA  ASP   103       1.425  45.846  27.879  1.00 25.00           C
ATOM    104  CA  THR   104       0.038  43.805  24.999  1.00 25.00           C
ATOM    105  CA  PHE   105      -2.307  40.834  24.616  1.00 25.00           C
ATOM    106  CA  ALA   106      -5.986  40.118  24.529  1.00 25.00           C
ATOM    107  CA  GLU   107      -9.638  40.821  24.004  1.00 25.00           C
ATOM    108  CA  LYS   108     -12.860  42.389  25.273  1.00 25.00           C
ATOM    109  CA  THR   109     -14.660  40.303  22.655  1.00 25.00           C
ATOM    110  CA  GLY   110     -17.721  42.483  21.999  1.00 25.00           C
ATOM    111  CA  PHE   111     -19.981  39.756  20.775  1.00 25.00           C
ATOM    112  CA  ASP   112     -19.833  38.246  24.253  1.00 25.00           C
ATOM    113  CA  PRO   113     -18.151  34.808  23.926  1.00 25.00           C
ATOM    114  CA  ARG   114     -16.991  31.738  25.898  1.00 25.00           C
ATOM    115  CA  ARG   115     -18.419  29.431  23.195  1.00 25.00           C
ATOM    116  CA  LEU   116     -18.894  30.350  19.490  1.00 25.00           C
ATOM    117  CA  THR   117     -17.024  33.645  19.168  1.00 25.00           C
ATOM    118  CA  THR   118     -13.635  32.769  20.650  1.00 25.00           C
ATOM    119  CA  SER   119     -10.127  31.632  21.452  1.00 25.00           C
ATOM    120  CA  TYR   120      -7.988  29.045  19.681  1.00 25.00           C
ATOM    121  CA  LEU   121      -5.927  25.882  20.128  1.00 25.00           C
ATOM    122  CA  TYR   122      -5.200  25.587  16.420  1.00 25.00           C
ATOM    123  CA  PHE   123      -2.657  25.329  13.616  1.00 25.00           C
ATOM    124  CA  ARG   124       0.250  25.908  11.162  1.00 25.00           C
ATOM    125  CA  ILE   125      -1.207  28.879   9.288  1.00 25.00           C
ATOM    126  CA  SER   126      -0.973  29.555   5.542  1.00 25.00           C
ATOM    127  CA  PRO   127       2.105  30.344   3.486  1.00 25.00           C
ATOM    128  CA  ARG   128       4.225  33.109   5.074  1.00 25.00           C
ATOM    129  CA  ARG   129       2.808  32.248   8.526  1.00 25.00           C
ATOM    130  CA  VAL   130       3.616  28.546   7.961  1.00 25.00           C
ATOM    131  CA  GLN   131       7.189  29.460   6.928  1.00 25.00           C
ATOM    132  CA  ALA   132       7.576  31.609  10.073  1.00 25.00           C
ATOM    133  CA  TRP   133       6.305  28.716  12.237  1.00 25.00           C
ATOM    134  CA  ARG   134       8.795  26.336  10.561  1.00 25.00           C
ATOM    135  CA  GLU   135      11.638  28.822  11.202  1.00 25.00           C
ATOM    136  CA  ALA   136      10.597  29.103  14.877  1.00 25.00           C
ATOM    137  CA  ASN   137      10.552  25.285  15.182  1.00 25.00           C
ATOM    138  CA  GLU   138      14.045  25.095  13.624  1.00 25.00           C
ATOM    139  CA  LEU   139      15.313  27.744  16.082  1.00 25.00           C
ATOM    140  CA  SER   140      13.815  25.779  19.009  1.00 25.00           C
ATOM    141  CA  GLY   141      15.504  22.578  17.756  1.00 25.00           C
ATOM    142  CA  ARG   142      18.851  24.420  17.486  1.00 25.00           C
ATOM    143  CA  GLU   143      18.436  25.747  21.055  1.00 25.00           C
ATOM    144  CA  LEU   144      17.669  22.210  22.307  1.00 25.00           C
ATOM    145  CA  MET   145      14.530  23.958  23.635  1.00 25.00           C
ATOM    146  CA  ARG   146      14.117  20.695  25.546  1.00 25.00           C
ATOM    147  CA  ASP   147      12.799  18.098  23.114  1.00 25.00           C
ATOM    148  CA  GLY   148       9.291  19.151  22.354  1.00 25.00           C
ATOM    149  CA  GLU   149       6.157  21.260  22.657  1.00 25.00           C
ATOM    150  CA  TRP   150       2.996  23.298  22.867  1.00 25.00           C
ATOM    151  CA  LEU   151       4.440  26.742  21.866  1.00 25.00           C
TER
END
