
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  121 (  121),  selected  121 , name T0371TS168_2-D2
# Molecule2: number of CA atoms  121 (  915),  selected  121 , name T0371_D2.pdb
# PARAMETERS: T0371TS168_2-D2.T0371_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    84       119 - 202         4.95     5.65
  LCS_AVERAGE:     54.87

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       140 - 158         1.79     9.12
  LONGEST_CONTINUOUS_SEGMENT:    19       145 - 163         1.89     7.00
  LCS_AVERAGE:      9.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       144 - 158         0.90    10.10
  LCS_AVERAGE:      6.58

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     S      82     S      82     13   15   25    11   11   12   12   13   18   26   42   58   73   82   89   96  100  104  108  111  113  115  119 
LCS_GDT     G      83     G      83     13   15   25    11   11   13   18   25   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     M      84     M      84     13   15   25    11   11   12   13   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I      85     I      85     13   15   25    11   11   12   12   14   20   35   50   61   75   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T      86     T      86     13   15   25    11   11   12   18   23   31   44   56   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K      87     K      87     13   15   25    11   11   13   18   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     E      88     E      88     13   15   25    11   11   12   15   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     Y      89     Y      89     13   15   25    11   11   12   12   23   28   44   56   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I      90     I      90     13   15   25    11   11   12   12   17   27   41   56   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D      91     D      91     13   15   25    11   11   12   16   25   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L      92     L      92     13   15   25    11   11   12   16   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K      93     K      93     13   15   27     3    3   12   19   22   31   43   54   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V      94     V      94     13   15   27     3    5   12   12   13   21   25   30   43   61   74   88   96  100  104  108  111  113  115  119 
LCS_GDT     D      95     D      95      5   15   27     3    5    5   10   17   21   23   30   35   60   78   88   96  100  104  106  111  113  115  119 
LCS_GDT     G      96     G      96      5   15   27     3    5    5    8   10   14   23   33   50   60   81   85   95  100  104  106  111  113  115  119 
LCS_GDT     G      97     G      97      5    9   27     4    5    5    8   12   16   24   34   41   56   68   83   91   96  101  104  108  112  115  119 
LCS_GDT     I      98     I      98      5    9   27     4    5    5    8   10   16   24   34   42   57   64   74   87   96  101  104  108  112  115  119 
LCS_GDT     V      99     V      99      5    9   27     4    4    6    8   15   24   39   51   66   75   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     100     A     100      5    9   27     4    4    6    8   11   16   29   38   52   62   74   87   95  100  104  108  111  113  115  119 
LCS_GDT     Y     101     Y     101      5    9   27     3    3    7   12   22   30   45   60   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     102     L     102      5    9   27     3    5    7    8   10   14   20   35   49   62   82   88   96  100  104  108  111  113  115  119 
LCS_GDT     G     103     G     103      5   10   27     4    7   13   19   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     104     T     104      9   10   27     3    5   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     105     A     105      9   10   27     5    7   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     106     N     106      9   10   27     5    7    9   13   15   24   34   43   61   69   81   89   94   98  103  108  111  113  115  119 
LCS_GDT     S     107     S     107      9   10   27     5    5    9    9   10   11   24   26   50   61   71   83   90   97  102  108  111  113  115  119 
LCS_GDT     A     108     A     108      9   10   27     5    7    9    9   10   21   26   36   50   63   79   87   94   98  103  108  111  113  115  119 
LCS_GDT     N     109     N     109      9   10   27     5    7    9   10   15   21   30   42   61   69   82   89   94   98  103  108  111  113  115  119 
LCS_GDT     Y     110     Y     110      9   10   27     5    7    9    9   10   21   25   30   44   61   71   83   92   97  102  107  111  113  115  119 
LCS_GDT     L     111     L     111      9   10   27     5    7    9    9   10   20   25   30   38   55   64   77   89   97  101  106  110  113  115  119 
LCS_GDT     V     112     V     112      9   10   27     5    7    9   10   15   21   31   33   47   62   79   87   94   98  103  108  111  113  115  119 
LCS_GDT     S     113     S     113      4   10   27     3    4   10   19   22   33   44   54   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     114     D     114      4    6   27     3    4    8   16   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     G     115     G     115      4    6   27     3    4    7   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     116     I     116      4    6   27     3    3    7   12   22   31   50   59   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K     117     K     117      4    6   27     3    4    5   10   13   14   15   28   37   44   53   61   79   84   99  101  108  111  115  119 
LCS_GDT     M     118     M     118      4    6   27     0    6    9   13   15   16   22   29   37   63   69   77   89   96  102  108  111  113  115  119 
LCS_GDT     L     119     L     119      4    6   84     1    4    9   13   15   16   22   29   37   63   69   77   93   97  102  108  111  113  115  119 
LCS_GDT     P     120     P     120      4    7   84     3    6    9   13   15   16   29   37   56   66   79   87   94   98  103  108  111  113  115  119 
LCS_GDT     V     121     V     121      4    7   84     3    4    8   10   16   26   33   56   65   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     S     122     S     122      4    7   84     3    3    5   11   12   17   24   30   40   47   56   72   79   93  100  105  109  113  115  119 
LCS_GDT     A     123     A     123      4    7   84     3    3    5    9   15   24   29   36   50   61   73   83   93   97  102  108  111  113  115  119 
LCS_GDT     I     124     I     124      4    7   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     125     D     125      4    7   84     3    5   11   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     126     D     126      4    7   84     3    5    9   16   24   32   49   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     S     127     S     127      4    6   84     3    5    5   13   20   31   43   55   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     128     N     128      4    6   84     3    4    9   12   17   25   37   50   62   73   82   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     129     I     129      3    6   84     3    4    6    6   12   24   31   40   55   73   81   89   96  100  104  106  111  113  115  119 
LCS_GDT     G     130     G     130      3    6   84     3    3    6    6    8    9   12   18   23   31   35   51   63   76   85   93   97  107  108  110 
LCS_GDT     E     131     E     131      3    6   84     3    3    4    6    8    9   12   14   21   28   37   51   62   76   85   92   97  106  108  111 
LCS_GDT     V     132     V     132      3    6   84     1    3    4    6    8   10   18   27   36   42   58   72   85   94  104  104  109  113  115  119 
LCS_GDT     N     133     N     133      0    6   84     0    3    4    6    8   11   12   17   32   42   55   65   83   94  104  104  109  113  115  119 
LCS_GDT     A     134     A     134      4    6   84     2    4    5   12   22   28   38   55   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     135     L     135      4    6   84     3    4    5   12   22   28   33   48   60   75   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V     136     V     136      4    6   84     3    4    5   11   22   28   35   53   65   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     137     L     137      5    6   84     3    4    7   12   22   28   33   42   59   75   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     138     L     138      5    6   84     3    4    7   11   17   24   31   40   56   68   81   89   96  100  104  108  111  113  115  119 
LCS_GDT     D     139     D     139      5    6   84     3    4   11   15   23   37   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     140     D     140      5   19   84     3    5    8   16   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     E     141     E     141      5   19   84     3    8   15   19   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     G     142     G     142      4   19   84     3    4   11   16   22   31   44   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     F     143     F     143      4   19   84     3    4    7   10   17   25   31   40   57   70   81   89   96  100  104  108  111  113  115  119 
LCS_GDT     N     144     N     144     15   19   84     3    4    7   16   23   31   42   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     W     145     W     145     15   19   84     4   12   15   19   23   39   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     F     146     F     146     15   19   84     3   13   15   19   23   30   36   48   66   75   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     H     147     H     147     15   19   84     3   13   15   19   23   31   41   60   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     148     D     148     15   19   84    11   13   15   19   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     149     L     149     15   19   84    11   13   15   19   23   37   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     150     N     150     15   19   84    11   13   15   19   23   31   46   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K     151     K     151     15   19   84    11   13   15   19   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     152     T     152     15   19   84    11   13   15   19   23   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V     153     V     153     15   19   84    11   13   15   19   23   31   45   60   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     154     N     154     15   19   84    11   13   15   19   23   37   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     155     L     155     15   19   84    11   13   15   19   25   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     156     L     156     15   19   84    11   13   15   19   23   37   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     R     157     R     157     15   19   84    11   13   15   19   23   32   48   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K     158     K     158     15   19   84    11   13   15   19   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     R     159     R     159      3   19   84     3    3    8   15   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     160     T     160      3   19   84     3    6   13   19   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     161     I     161      3   19   84     3    3    8   18   25   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     P     162     P     162      5   19   84     3    4    8   16   24   38   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     163     A     163      5   19   84     3    6   13   19   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     164     I     164      5    8   84     3    5    9   15   24   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V     165     V     165      5    8   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     166     A     166      5    8   84     3    4    9   16   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     167     N     167      5    7   84     3    4    6   11   15   26   33   44   61   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     168     T     168      5    7   84     1    3    9   13   24   35   48   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     169     D     169      5   12   84     3    4    7   10   22   31   48   58   68   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     N     170     N     170      5   12   84     3    4   11   18   23   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     171     T     171      4   12   84     3    6   10   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     Y     172     Y     172      6   12   84     3    4    9   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     P     173     P     173      6   12   84     3    4    7   14   25   40   50   60   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     174     L     174      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     175     T     175      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     K     176     K     176      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     177     T     177      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     D     178     D     178      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V     179     V     179      7   12   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     180     A     180      7   12   84     3    5    9   16   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     181     I     181      3    4   84     2    4    6   12   21   34   49   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     182     A     182     13   14   84     3    4    5   12   22   35   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     183     I     183     13   14   84    10   12   12   12   22   29   46   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     G     184     G     184     13   14   84    10   12   12   12   13   16   23   31   40   54   68   84   93  100  104  108  111  113  115  119 
LCS_GDT     G     185     G     185     13   14   84    10   12   12   12   15   26   33   44   62   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     V     186     V     186     13   14   84    10   12   13   18   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     A     187     A     187     13   14   84    10   12   12   12   16   24   39   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     T     188     T     188     13   14   84    10   12   12   12   17   27   37   48   62   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     M     189     M     189     13   14   84    10   12   12   12   17   21   32   51   67   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     190     I     190     13   14   84    10   12   12   18   23   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     E     191     E     191     13   14   84    10   12   12   12   22   36   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     S     192     S     192     13   14   84    10   12   12   12   13   23   40   53   64   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     193     I     193     13   14   84     5   12   12   12   17   26   39   51   67   74   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     L     194     L     194     13   14   84     9   12   12   18   23   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     G     195     G     195      4   14   84     3    4    9   17   24   36   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     R     196     R     196      4    8   84     3    4    4    6   10   23   37   48   60   74   82   89   96  100  104  108  111  113  115  119 
LCS_GDT     R     197     R     197      4    8   84     3    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     F     198     F     198      3    8   84     1    6   12   17   26   40   50   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     I     199     I     199      4    8   84     3    5    6   11   19   29   45   61   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     R     200     R     200      4    8   84     3    5    6   11   19   29   39   51   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     F     201     F     201      4    8   84     3    5    6   11   19   29   39   51   69   76   84   91   96  100  104  108  111  113  115  119 
LCS_GDT     G     202     G     202      4    8   84     3    5    6   11   17   24   33   46   57   75   84   91   96  100  104  108  111  113  115  119 
LCS_AVERAGE  LCS_A:  23.77  (   6.58    9.88   54.87 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     19     26     40     50     61     69     76     84     91     96    100    104    108    111    113    115    119 
GDT PERCENT_CA   9.09  10.74  12.40  15.70  21.49  33.06  41.32  50.41  57.02  62.81  69.42  75.21  79.34  82.64  85.95  89.26  91.74  93.39  95.04  98.35
GDT RMS_LOCAL    0.22   0.49   0.67   1.42   1.90   2.34   2.60   2.96   3.20   3.40   3.67   3.89   4.09   4.27   4.48   4.65   4.78   4.89   5.01   5.28
GDT RMS_ALL_CA  25.10   9.89   9.24   7.00   5.96   5.78   5.68   5.58   5.56   5.54   5.52   5.52   5.54   5.55   5.57   5.55   5.54   5.53   5.53   5.52

#      Molecule1      Molecule2       DISTANCE
LGA    S      82      S      82          7.230
LGA    G      83      G      83          2.772
LGA    M      84      M      84          3.029
LGA    I      85      I      85          5.994
LGA    T      86      T      86          5.235
LGA    K      87      K      87          1.923
LGA    E      88      E      88          3.004
LGA    Y      89      Y      89          5.156
LGA    I      90      I      90          5.110
LGA    D      91      D      91          2.901
LGA    L      92      L      92          2.387
LGA    K      93      K      93          5.608
LGA    V      94      V      94          7.688
LGA    D      95      D      95          8.585
LGA    G      96      G      96          8.948
LGA    G      97      G      97         10.395
LGA    I      98      I      98         10.394
LGA    V      99      V      99          5.574
LGA    A     100      A     100          7.556
LGA    Y     101      Y     101          4.009
LGA    L     102      L     102          6.651
LGA    G     103      G     103          1.078
LGA    T     104      T     104          3.817
LGA    A     105      A     105          3.563
LGA    N     106      N     106          6.672
LGA    S     107      S     107          8.941
LGA    A     108      A     108          7.746
LGA    N     109      N     109          7.107
LGA    Y     110      Y     110          9.146
LGA    L     111      L     111          9.839
LGA    V     112      V     112          8.492
LGA    S     113      S     113          5.536
LGA    D     114      D     114          3.788
LGA    G     115      G     115          3.318
LGA    I     116      I     116          4.335
LGA    K     117      K     117         10.478
LGA    M     118      M     118          8.811
LGA    L     119      L     119          8.150
LGA    P     120      P     120          7.287
LGA    V     121      V     121          5.707
LGA    S     122      S     122         10.768
LGA    A     123      A     123          9.245
LGA    I     124      I     124          3.408
LGA    D     125      D     125          1.980
LGA    D     126      D     126          3.908
LGA    S     127      S     127          4.839
LGA    N     128      N     128          6.171
LGA    I     129      I     129          7.562
LGA    G     130      G     130         13.328
LGA    E     131      E     131         12.525
LGA    V     132      V     132          9.130
LGA    N     133      N     133          8.881
LGA    A     134      A     134          4.742
LGA    L     135      L     135          5.810
LGA    V     136      V     136          5.052
LGA    L     137      L     137          5.673
LGA    L     138      L     138          6.644
LGA    D     139      D     139          2.371
LGA    D     140      D     140          2.706
LGA    E     141      E     141          1.909
LGA    G     142      G     142          3.814
LGA    F     143      F     143          6.648
LGA    N     144      N     144          3.983
LGA    W     145      W     145          2.288
LGA    F     146      F     146          5.394
LGA    H     147      H     147          4.246
LGA    D     148      D     148          1.675
LGA    L     149      L     149          3.230
LGA    N     150      N     150          3.973
LGA    K     151      K     151          2.044
LGA    T     152      T     152          2.408
LGA    V     153      V     153          4.137
LGA    N     154      N     154          3.062
LGA    L     155      L     155          1.541
LGA    L     156      L     156          3.310
LGA    R     157      R     157          3.931
LGA    K     158      K     158          2.263
LGA    R     159      R     159          3.806
LGA    T     160      T     160          1.239
LGA    I     161      I     161          2.245
LGA    P     162      P     162          2.804
LGA    A     163      A     163          2.012
LGA    I     164      I     164          2.833
LGA    V     165      V     165          1.714
LGA    A     166      A     166          2.540
LGA    N     167      N     167          6.008
LGA    T     168      T     168          3.973
LGA    D     169      D     169          4.888
LGA    N     170      N     170          2.704
LGA    T     171      T     171          1.300
LGA    Y     172      Y     172          3.868
LGA    P     173      P     173          4.121
LGA    L     174      L     174          3.750
LGA    T     175      T     175          3.926
LGA    K     176      K     176          3.356
LGA    T     177      T     177          3.276
LGA    D     178      D     178          3.357
LGA    V     179      V     179          2.280
LGA    A     180      A     180          3.541
LGA    I     181      I     181          3.440
LGA    A     182      A     182          3.187
LGA    I     183      I     183          3.448
LGA    G     184      G     184          7.601
LGA    G     185      G     185          6.369
LGA    V     186      V     186          1.957
LGA    A     187      A     187          3.979
LGA    T     188      T     188          6.028
LGA    M     189      M     189          5.397
LGA    I     190      I     190          3.186
LGA    E     191      E     191          2.940
LGA    S     192      S     192          6.045
LGA    I     193      I     193          5.965
LGA    L     194      L     194          2.863
LGA    G     195      G     195          3.777
LGA    R     196      R     196          7.044
LGA    R     197      R     197          2.673
LGA    F     198      F     198          2.437
LGA    I     199      I     199          3.888
LGA    R     200      R     200          4.730
LGA    F     201      F     201          4.778
LGA    G     202      G     202          6.132

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  121  121    4.0     61    2.96    41.529    35.186     1.993

LGA_LOCAL      RMSD =  2.960  Number of atoms =   61  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.559  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  5.514  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.555733 * X  +   0.630090 * Y  +   0.542354 * Z  +  36.284828
  Y_new =  -0.078635 * X  +  -0.609605 * Y  +   0.788795 * Z  +   4.299670
  Z_new =   0.827633 * X  +  -0.481008 * Y  +  -0.289231 * Z  + -54.338207 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.112172    1.029420  [ DEG:  -121.0186     58.9814 ]
  Theta =  -0.974878   -2.166715  [ DEG:   -55.8564   -124.1436 ]
  Phi   =  -0.140565    3.001028  [ DEG:    -8.0538    171.9462 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0371TS168_2-D2                               
REMARK     2: T0371_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0371TS168_2-D2.T0371_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  121  121   4.0   61   2.96  35.186     5.51
REMARK  ---------------------------------------------------------- 
MOLECULE T0371TS168_2-D2
PFRMAT TS
TARGET T0371
MODEL 2
PARENT N/A
ATOM     82  CA  SER    82      36.010  -1.478 -57.049  1.00 25.00           C
ATOM     83  CA  GLY    83      34.438  -0.480 -60.396  1.00 25.00           C
ATOM     84  CA  MET    84      36.104   2.962 -60.180  1.00 25.00           C
ATOM     85  CA  ILE    85      39.479   1.309 -59.443  1.00 25.00           C
ATOM     86  CA  THR    86      39.023  -1.018 -62.450  1.00 25.00           C
ATOM     87  CA  LYS    87      38.188   1.983 -64.678  1.00 25.00           C
ATOM     88  CA  GLU    88      41.316   3.809 -63.433  1.00 25.00           C
ATOM     89  CA  TYR    89      43.447   0.715 -64.173  1.00 25.00           C
ATOM     90  CA  ILE    90      41.961   0.505 -67.698  1.00 25.00           C
ATOM     91  CA  ASP    91      42.728   4.212 -68.269  1.00 25.00           C
ATOM     92  CA  LEU    92      46.330   3.676 -67.083  1.00 25.00           C
ATOM     93  CA  LYS    93      48.925   2.724 -69.648  1.00 25.00           C
ATOM     94  CA  VAL    94      47.514  -0.404 -71.247  1.00 25.00           C
ATOM     95  CA  ASP    95      48.086  -3.722 -73.052  1.00 25.00           C
ATOM     96  CA  GLY    96      44.883  -5.505 -71.921  1.00 25.00           C
ATOM     97  CA  GLY    97      43.761  -5.381 -68.262  1.00 25.00           C
ATOM     98  CA  ILE    98      41.850  -4.180 -65.195  1.00 25.00           C
ATOM     99  CA  VAL    99      43.523  -3.188 -61.907  1.00 25.00           C
ATOM    100  CA  ALA   100      41.582  -3.169 -58.570  1.00 25.00           C
ATOM    101  CA  TYR   101      41.225  -4.422 -54.979  1.00 25.00           C
ATOM    102  CA  LEU   102      37.766  -5.073 -53.488  1.00 25.00           C
ATOM    103  CA  GLY   103      39.740  -7.059 -50.913  1.00 25.00           C
ATOM    104  CA  THR   104      42.226  -9.726 -51.996  1.00 25.00           C
ATOM    105  CA  ALA   105      42.571 -10.923 -55.559  1.00 25.00           C
ATOM    106  CA  ASN   106      41.207  -8.527 -58.217  1.00 25.00           C
ATOM    107  CA  SER   107      44.407  -6.434 -58.008  1.00 25.00           C
ATOM    108  CA  ALA   108      46.531  -9.596 -58.405  1.00 25.00           C
ATOM    109  CA  ASN   109      44.465 -10.630 -61.458  1.00 25.00           C
ATOM    110  CA  TYR   110      44.930  -7.148 -62.983  1.00 25.00           C
ATOM    111  CA  LEU   111      48.706  -7.363 -62.382  1.00 25.00           C
ATOM    112  CA  VAL   112      48.800 -10.810 -64.048  1.00 25.00           C
ATOM    113  CA  SER   113      46.863  -9.437 -67.053  1.00 25.00           C
ATOM    114  CA  ASP   114      48.660  -6.602 -68.746  1.00 25.00           C
ATOM    115  CA  GLY   115      50.874  -3.577 -67.861  1.00 25.00           C
ATOM    116  CA  ILE   116      48.614  -1.506 -65.681  1.00 25.00           C
ATOM    117  CA  LYS   117      49.029   1.857 -63.961  1.00 25.00           C
ATOM    118  CA  MET   118      49.187   0.109 -60.570  1.00 25.00           C
ATOM    119  CA  LEU   119      49.814  -1.602 -57.308  1.00 25.00           C
ATOM    120  CA  PRO   120      50.821  -3.271 -54.071  1.00 25.00           C
ATOM    121  CA  VAL   121      50.618  -6.630 -55.795  1.00 25.00           C
ATOM    122  CA  SER   122      54.004  -6.198 -57.544  1.00 25.00           C
ATOM    123  CA  ALA   123      57.598  -6.974 -56.618  1.00 25.00           C
ATOM    124  CA  ILE   124      56.230  -6.694 -53.080  1.00 25.00           C
ATOM    125  CA  ASP   125      58.899  -9.160 -52.157  1.00 25.00           C
ATOM    126  CA  ASP   126      61.287 -11.821 -53.309  1.00 25.00           C
ATOM    127  CA  SER   127      59.376 -15.098 -53.550  1.00 25.00           C
ATOM    128  CA  ASN   128      56.005 -13.378 -53.189  1.00 25.00           C
ATOM    129  CA  ILE   129      53.010 -11.020 -53.039  1.00 25.00           C
ATOM    130  CA  GLY   130      49.604 -11.897 -54.330  1.00 25.00           C
ATOM    131  CA  GLU   131      48.240  -9.204 -52.031  1.00 25.00           C
ATOM    132  CA  VAL   132      46.650  -5.801 -52.836  1.00 25.00           C
ATOM    133  CA  ASN   133      45.920  -2.244 -54.106  1.00 25.00           C
ATOM    134  CA  ALA   134      44.804   0.725 -56.203  1.00 25.00           C
ATOM    135  CA  LEU   135      41.680   0.175 -54.110  1.00 25.00           C
ATOM    136  CA  VAL   136      39.723  -1.245 -51.211  1.00 25.00           C
ATOM    137  CA  LEU   137      36.066  -1.500 -50.233  1.00 25.00           C
ATOM    138  CA  LEU   138      33.186  -1.811 -47.769  1.00 25.00           C
ATOM    139  CA  ASP   139      36.008  -4.092 -46.673  1.00 25.00           C
ATOM    140  CA  ASP   140      39.145  -6.114 -45.992  1.00 25.00           C
ATOM    141  CA  GLU   141      37.567  -9.622 -46.119  1.00 25.00           C
ATOM    142  CA  GLY   142      39.061 -11.369 -43.091  1.00 25.00           C
ATOM    143  CA  PHE   143      38.374  -8.789 -40.366  1.00 25.00           C
ATOM    144  CA  ASN   144      41.892  -9.449 -39.135  1.00 25.00           C
ATOM    145  CA  TRP   145      42.713  -6.592 -41.552  1.00 25.00           C
ATOM    146  CA  PHE   146      44.206  -3.384 -40.086  1.00 25.00           C
ATOM    147  CA  HIS   147      47.733  -4.836 -40.435  1.00 25.00           C
ATOM    148  CA  ASP   148      47.012  -5.774 -44.079  1.00 25.00           C
ATOM    149  CA  LEU   149      45.735  -2.229 -44.763  1.00 25.00           C
ATOM    150  CA  ASN   150      48.896  -0.756 -43.180  1.00 25.00           C
ATOM    151  CA  LYS   151      51.074  -3.045 -45.344  1.00 25.00           C
ATOM    152  CA  THR   152      49.154  -1.956 -48.474  1.00 25.00           C
ATOM    153  CA  VAL   153      49.641   1.721 -47.521  1.00 25.00           C
ATOM    154  CA  ASN   154      53.389   1.122 -47.021  1.00 25.00           C
ATOM    155  CA  LEU   155      53.599  -0.580 -50.446  1.00 25.00           C
ATOM    156  CA  LEU   156      51.775   2.378 -52.055  1.00 25.00           C
ATOM    157  CA  ARG   157      54.197   4.819 -50.370  1.00 25.00           C
ATOM    158  CA  LYS   158      57.178   2.780 -51.644  1.00 25.00           C
ATOM    159  CA  ARG   159      58.408   6.051 -53.148  1.00 25.00           C
ATOM    160  CA  THR   160      55.544   7.012 -55.443  1.00 25.00           C
ATOM    161  CA  ILE   161      51.811   6.765 -55.516  1.00 25.00           C
ATOM    162  CA  PRO   162      50.208   3.557 -56.743  1.00 25.00           C
ATOM    163  CA  ALA   163      47.119   5.049 -55.186  1.00 25.00           C
ATOM    164  CA  ILE   164      45.044   3.937 -52.120  1.00 25.00           C
ATOM    165  CA  VAL   165      41.443   4.963 -52.578  1.00 25.00           C
ATOM    166  CA  ALA   166      38.192   3.154 -52.124  1.00 25.00           C
ATOM    167  CA  ASN   167      37.373   2.366 -48.447  1.00 25.00           C
ATOM    168  CA  THR   168      36.351   5.078 -45.962  1.00 25.00           C
ATOM    169  CA  ASP   169      36.474   7.403 -42.901  1.00 25.00           C
ATOM    170  CA  ASN   170      32.729   7.188 -43.162  1.00 25.00           C
ATOM    171  CA  THR   171      32.568   4.290 -40.776  1.00 25.00           C
ATOM    172  CA  TYR   172      31.746   2.187 -43.887  1.00 25.00           C
ATOM    173  CA  PRO   173      28.370   1.109 -42.480  1.00 25.00           C
ATOM    174  CA  LEU   174      28.781  -2.442 -41.180  1.00 25.00           C
ATOM    175  CA  THR   175      26.734  -3.048 -38.051  1.00 25.00           C
ATOM    176  CA  LYS   176      24.288  -1.888 -35.372  1.00 25.00           C
ATOM    177  CA  THR   177      26.876  -1.759 -32.644  1.00 25.00           C
ATOM    178  CA  ASP   178      30.251  -0.850 -33.993  1.00 25.00           C
ATOM    179  CA  VAL   179      30.881   0.418 -37.516  1.00 25.00           C
ATOM    180  CA  ALA   180      34.668   0.441 -38.192  1.00 25.00           C
ATOM    181  CA  ILE   181      34.576  -3.290 -38.831  1.00 25.00           C
ATOM    182  CA  ALA   182      33.721  -2.430 -42.447  1.00 25.00           C
ATOM    183  CA  ILE   183      36.014   0.538 -43.064  1.00 25.00           C
ATOM    184  CA  GLY   184      38.687  -0.517 -40.532  1.00 25.00           C
ATOM    185  CA  GLY   185      41.090  -1.370 -43.388  1.00 25.00           C
ATOM    186  CA  VAL   186      40.436   2.046 -44.992  1.00 25.00           C
ATOM    187  CA  ALA   187      41.111   3.775 -41.643  1.00 25.00           C
ATOM    188  CA  THR   188      44.383   1.823 -41.266  1.00 25.00           C
ATOM    189  CA  MET   189      45.424   2.834 -44.811  1.00 25.00           C
ATOM    190  CA  ILE   190      44.641   6.499 -44.021  1.00 25.00           C
ATOM    191  CA  GLU   191      46.725   6.279 -40.815  1.00 25.00           C
ATOM    192  CA  SER   192      49.635   4.754 -42.783  1.00 25.00           C
ATOM    193  CA  ILE   193      49.394   7.568 -45.369  1.00 25.00           C
ATOM    194  CA  LEU   194      49.419  10.179 -42.568  1.00 25.00           C
ATOM    195  CA  GLY   195      53.180  10.223 -43.146  1.00 25.00           C
ATOM    196  CA  ARG   196      53.728   9.786 -46.829  1.00 25.00           C
ATOM    197  CA  ARG   197      50.639  10.065 -49.039  1.00 25.00           C
ATOM    198  CA  PHE   198      47.077   9.150 -50.179  1.00 25.00           C
ATOM    199  CA  ILE   199      43.392   8.405 -50.096  1.00 25.00           C
ATOM    200  CA  ARG   200      40.060   7.542 -48.522  1.00 25.00           C
ATOM    201  CA  PHE   201      37.220   7.278 -51.034  1.00 25.00           C
ATOM    202  CA  GLY   202      33.980   5.356 -50.722  1.00 25.00           C
TER
END
