
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  121 (  121),  selected  121 , name T0371TS168_4-D2
# Molecule2: number of CA atoms  121 (  915),  selected  121 , name T0371_D2.pdb
# PARAMETERS: T0371TS168_4-D2.T0371_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   121        82 - 202         4.47     4.47
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21       145 - 165         1.97     6.50
  LCS_AVERAGE:     10.54

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       144 - 158         0.98    10.56
  LCS_AVERAGE:      6.05

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     S      82     S      82     11   12  121    11   11   11   11   11   14   24   44   57   74   93  101  109  113  115  118  119  120  121  121 
LCS_GDT     G      83     G      83     11   12  121    11   11   11   12   21   35   50   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     M      84     M      84     11   12  121    11   11   11   11   11   14   19   34   46   65   69   91  102  108  112  118  119  120  121  121 
LCS_GDT     I      85     I      85     11   12  121    11   11   11   11   11   15   32   44   59   74   89  101  108  113  115  118  119  120  121  121 
LCS_GDT     T      86     T      86     11   12  121    11   11   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     K      87     K      87     11   12  121    11   11   11   13   22   37   56   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     E      88     E      88     11   12  121    11   11   11   13   26   35   50   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     Y      89     Y      89     11   12  121    11   11   11   15   32   43   58   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I      90     I      90     11   12  121    11   11   11   17   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D      91     D      91     11   12  121    11   11   13   22   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L      92     L      92     11   12  121    11   11   13   22   35   47   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     K      93     K      93      3   12  121     3    3    4    7   21   34   55   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V      94     V      94      5    7  121     3    4    5    6    7   14   17   22   30   46   79   91  101  113  115  117  119  120  121  121 
LCS_GDT     D      95     D      95      5    7  121     3    4    5    6   11   20   40   60   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G      96     G      96      5    8  121     3    4    9   17   33   45   59   70   80   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G      97     G      97      5   11  121     3    6   11   21   34   45   57   69   80   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I      98     I      98      5   11  121     1    6   11   18   31   44   54   65   80   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V      99     V      99      4   11  121     2    5   11   22   34   45   59   70   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     100     A     100      4   11  121     0    4    8   18   28   42   54   69   80   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     Y     101     Y     101      4   12  121     3    4   11   21   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     102     L     102      4   12  121     3    6   11   22   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     103     G     103      8   12  121     3    6   10   19   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     104     T     104      8   12  121     3    4   10   19   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     105     A     105      8   12  121     5    7   10   22   35   45   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     106     N     106      8   12  121     5    7   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     S     107     S     107      8   12  121     5    7   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     108     A     108      8   12  121     5    7   10   16   30   42   58   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     109     N     109      8   12  121     5    7   10   16   30   41   58   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     Y     110     Y     110      8   12  121     5    7   10   16   30   41   58   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     111     L     111      8   12  121     5    7   10   16   26   40   54   70   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     112     V     112      8   12  121     5    7   10   16   26   40   54   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     S     113     S     113      3   12  121     3    3    5    9   16   29   48   63   78   90  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     114     D     114      3    9  121     3    3    5    8   21   34   50   65   81   90  100  104  108  113  115  118  119  120  121  121 
LCS_GDT     G     115     G     115      4    9  121     3    3    4    9   25   37   55   68   81   90  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     116     I     116      4    9  121     3    3    5   15   30   43   58   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     K     117     K     117      4    9  121     5    9   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     M     118     M     118      4    9  121     3    4   12   23   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     119     L     119      4    9  121     3    4    9   23   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     P     120     P     120      4    9  121     3    4    9   15   29   46   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     121     V     121      4    7  121     3    3    9   18   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     S     122     S     122      3    7  121     3    4   10   21   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     123     A     123      3    9  121     3    7   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     124     I     124      3    9  121     3    7   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     125     D     125      3    9  121     0    3    6   18   30   45   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     126     D     126      4    9  121     3    4    7   19   28   42   54   60   73   85   94  104  109  113  115  118  119  120  121  121 
LCS_GDT     S     127     S     127      4    9  121     3    4   10   21   32   45   56   65   80   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     128     N     128      4    9  121     3    5   11   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     129     I     129      4    9  121     3    6   11   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     130     G     130      4    9  121     3   10   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     E     131     E     131      4    9  121     3    4    5   11   16   22   49   64   78   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     132     V     132      4    7  121     3    6   12   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     133     N     133      4    7  121     3    4    5    9   10   28   45   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     134     A     134      4    8  121     3    6   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     135     L     135      4    8  121     3    6   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     136     V     136      4    9  121     3    5    7   11   21   33   52   62   78   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     137     L     137      4    9  121     3    5   10   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     138     L     138      3    9  121     3    4   10   19   31   45   58   70   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     139     D     139      5   20  121     5   10   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     140     D     140      5   20  121     3   10   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     E     141     E     141      5   20  121     3    6   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     142     G     142      5   20  121     3    4    7   15   26   43   58   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     F     143     F     143      5   20  121     3    4    8   15   25   43   58   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     144     N     144     15   20  121     3    4    8   16   29   44   60   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     W     145     W     145     15   21  121     3   12   15   22   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     F     146     F     146     15   21  121     3   13   15   16   22   28   46   61   75   87   99  105  109  113  115  118  119  120  121  121 
LCS_GDT     H     147     H     147     15   21  121     3   13   15   16   29   43   60   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     148     D     148     15   21  121    11   13   15   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     149     L     149     15   21  121    11   13   15   17   27   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     150     N     150     15   21  121    11   13   15   16   26   43   60   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     K     151     K     151     15   21  121    11   13   15   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     152     T     152     15   21  121    11   13   15   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     153     V     153     15   21  121    11   13   15   16   26   46   60   71   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     154     N     154     15   21  121    11   13   15   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     155     L     155     15   21  121    11   13   15   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     156     L     156     15   21  121    11   13   15   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     R     157     R     157     15   21  121    11   13   15   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     K     158     K     158     15   21  121    11   13   15   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     R     159     R     159      4   21  121     3    3    6   12   20   40   53   67   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     160     T     160      4   21  121     3   11   15   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     161     I     161      4   21  121     3    7   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     P     162     P     162      4   21  121     3    6   13   23   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     163     A     163      4   21  121     3   10   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     164     I     164      4   21  121     3    4    9   17   30   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     165     V     165      4   21  121     1    4    8   16   29   46   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     166     A     166      4   12  121     2    7   10   15   26   40   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     167     N     167      4   12  121     3    4    6   14   21   37   56   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     168     T     168      4   12  121     3   10   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     169     D     169      4   12  121     3    7   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     N     170     N     170      4   11  121     3    4    9   16   33   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     171     T     171      4    7  121     3    4    8   17   31   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     Y     172     Y     172      4    8  121     3    4    5    8   22   32   49   66   77   88  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     P     173     P     173      3    8  121     3    3    4    8   22   32   49   63   75   88   99  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     174     L     174      4    8  121     3    4    4    7   15   32   53   66   78   88  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     175     T     175      4    8  121     3    4    4    6    8   10   20   35   66   84   94  104  109  113  115  118  119  120  121  121 
LCS_GDT     K     176     K     176      5    8  121     4    5    5    6    8   14   33   48   68   84   94  101  108  113  115  118  119  120  121  121 
LCS_GDT     T     177     T     177      5    8  121     4    5    5    6   21   30   49   62   74   88   99  105  109  113  115  118  119  120  121  121 
LCS_GDT     D     178     D     178      5    8  121     4    5    9   17   31   48   59   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     179     V     179      5    8  121     4    5    8   17   32   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     180     A     180      5    6  121     3    5   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     181     I     181      3   15  121     3    5   13   23   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     182     A     182     13   15  121    11   13   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     183     I     183     13   15  121    11   13   13   22   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     184     G     184     13   15  121    11   13   13   14   22   38   54   68   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     185     G     185     13   15  121    11   13   13   18   31   42   58   70   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     V     186     V     186     13   15  121    11   13   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     A     187     A     187     13   15  121    11   13   13   16   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     T     188     T     188     13   15  121    11   13   13   20   31   45   58   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     M     189     M     189     13   15  121    11   13   13   21   32   45   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     190     I     190     13   15  121    11   13   13   23   35   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     E     191     E     191     13   15  121    11   13   13   15   31   45   59   70   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     S     192     S     192     13   15  121    11   13   13   21   32   45   58   69   81   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     193     I     193     13   15  121     5   13   13   17   34   46   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     L     194     L     194     13   15  121    10   13   13   22   34   48   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     G     195     G     195      4   15  121     3    4   10   19   29   44   56   66   77   89  100  104  109  113  115  118  119  120  121  121 
LCS_GDT     R     196     R     196      4    6  121     3    5    6   15   19   24   37   51   65   78   94   99  106  112  115  118  119  120  121  121 
LCS_GDT     R     197     R     197      4    6  121     3    7   10   21   34   46   60   71   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     F     198     F     198      4    6  121     3    6   10   21   32   45   58   69   82   92  100  105  109  113  115  118  119  120  121  121 
LCS_GDT     I     199     I     199      4    6  121     3    5    6   10   20   29   33   45   61   73   78   86   95  101  108  111  117  120  121  121 
LCS_GDT     R     200     R     200      4    6  121     3    4    9   15   22   32   46   61   69   80   90   99  106  111  115  118  119  120  121  121 
LCS_GDT     F     201     F     201      3    6  121     1    3    6   13   21   30   41   58   69   80   90   98  105  107  113  118  119  120  121  121 
LCS_GDT     G     202     G     202      3    4  121     0    3    3    4    9   11   14   16   30   42   55   70   78   99  104  115  119  120  121  121 
LCS_AVERAGE  LCS_A:  38.86  (   6.05   10.54  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     23     35     48     60     71     82     92    100    105    109    113    115    118    119    120    121    121 
GDT PERCENT_CA   9.09  10.74  12.40  19.01  28.93  39.67  49.59  58.68  67.77  76.03  82.64  86.78  90.08  93.39  95.04  97.52  98.35  99.17 100.00 100.00
GDT RMS_LOCAL    0.22   0.39   0.75   1.56   1.87   2.22   2.52   2.83   3.11   3.33   3.53   3.70   3.85   4.01   4.10   4.27   4.31   4.39   4.47   4.47
GDT RMS_ALL_CA  21.65  17.29  10.31   4.63   4.64   4.57   4.54   4.51   4.51   4.52   4.50   4.51   4.50   4.50   4.51   4.48   4.48   4.47   4.47   4.47

#      Molecule1      Molecule2       DISTANCE
LGA    S      82      S      82          6.896
LGA    G      83      G      83          4.566
LGA    M      84      M      84          8.592
LGA    I      85      I      85          7.232
LGA    T      86      T      86          1.746
LGA    K      87      K      87          3.997
LGA    E      88      E      88          4.931
LGA    Y      89      Y      89          3.967
LGA    I      90      I      90          3.773
LGA    D      91      D      91          2.968
LGA    L      92      L      92          2.429
LGA    K      93      K      93          4.925
LGA    V      94      V      94          7.627
LGA    D      95      D      95          4.727
LGA    G      96      G      96          4.985
LGA    G      97      G      97          5.429
LGA    I      98      I      98          5.764
LGA    V      99      V      99          4.568
LGA    A     100      A     100          5.331
LGA    Y     101      Y     101          2.932
LGA    L     102      L     102          3.858
LGA    G     103      G     103          2.993
LGA    T     104      T     104          2.922
LGA    A     105      A     105          3.347
LGA    N     106      N     106          1.898
LGA    S     107      S     107          2.067
LGA    A     108      A     108          3.432
LGA    N     109      N     109          3.965
LGA    Y     110      Y     110          3.950
LGA    L     111      L     111          4.391
LGA    V     112      V     112          4.888
LGA    S     113      S     113          5.910
LGA    D     114      D     114          6.346
LGA    G     115      G     115          5.791
LGA    I     116      I     116          4.633
LGA    K     117      K     117          1.911
LGA    M     118      M     118          3.470
LGA    L     119      L     119          3.192
LGA    P     120      P     120          3.426
LGA    V     121      V     121          2.957
LGA    S     122      S     122          3.315
LGA    A     123      A     123          1.915
LGA    I     124      I     124          1.746
LGA    D     125      D     125          3.825
LGA    D     126      D     126          6.954
LGA    S     127      S     127          5.576
LGA    N     128      N     128          3.110
LGA    I     129      I     129          2.087
LGA    G     130      G     130          1.145
LGA    E     131      E     131          5.428
LGA    V     132      V     132          2.706
LGA    N     133      N     133          4.952
LGA    A     134      A     134          1.827
LGA    L     135      L     135          1.890
LGA    V     136      V     136          5.558
LGA    L     137      L     137          3.254
LGA    L     138      L     138          4.148
LGA    D     139      D     139          0.612
LGA    D     140      D     140          1.253
LGA    E     141      E     141          2.678
LGA    G     142      G     142          4.406
LGA    F     143      F     143          3.998
LGA    N     144      N     144          4.504
LGA    W     145      W     145          3.290
LGA    F     146      F     146          6.415
LGA    H     147      H     147          4.845
LGA    D     148      D     148          2.014
LGA    L     149      L     149          3.764
LGA    N     150      N     150          4.415
LGA    K     151      K     151          2.263
LGA    T     152      T     152          2.148
LGA    V     153      V     153          3.922
LGA    N     154      N     154          2.829
LGA    L     155      L     155          0.891
LGA    L     156      L     156          2.375
LGA    R     157      R     157          2.979
LGA    K     158      K     158          1.390
LGA    R     159      R     159          4.764
LGA    T     160      T     160          1.911
LGA    I     161      I     161          1.666
LGA    P     162      P     162          2.357
LGA    A     163      A     163          1.187
LGA    I     164      I     164          3.241
LGA    V     165      V     165          3.482
LGA    A     166      A     166          3.393
LGA    N     167      N     167          3.928
LGA    T     168      T     168          1.250
LGA    D     169      D     169          1.658
LGA    N     170      N     170          2.882
LGA    T     171      T     171          3.753
LGA    Y     172      Y     172          6.191
LGA    P     173      P     173          6.970
LGA    L     174      L     174          5.880
LGA    T     175      T     175          6.538
LGA    K     176      K     176          7.228
LGA    T     177      T     177          7.103
LGA    D     178      D     178          4.567
LGA    V     179      V     179          3.714
LGA    A     180      A     180          3.422
LGA    I     181      I     181          1.887
LGA    A     182      A     182          1.458
LGA    I     183      I     183          2.330
LGA    G     184      G     184          4.970
LGA    G     185      G     185          4.308
LGA    V     186      V     186          0.902
LGA    A     187      A     187          3.268
LGA    T     188      T     188          5.125
LGA    M     189      M     189          3.674
LGA    I     190      I     190          0.409
LGA    E     191      E     191          4.239
LGA    S     192      S     192          5.526
LGA    I     193      I     193          3.357
LGA    L     194      L     194          2.897
LGA    G     195      G     195          6.412
LGA    R     196      R     196          7.835
LGA    R     197      R     197          3.621
LGA    F     198      F     198          4.902
LGA    I     199      I     199         10.937
LGA    R     200      R     200          8.497
LGA    F     201      F     201          9.033
LGA    G     202      G     202         10.178

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  121  121    4.0     71    2.83    46.488    40.528     2.422

LGA_LOCAL      RMSD =  2.832  Number of atoms =   71  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.496  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  4.472  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.022938 * X  +   0.804836 * Y  +   0.593053 * Z  +  38.382023
  Y_new =  -0.932572 * X  +  -0.196537 * Y  +   0.302791 * Z  +   7.847230
  Z_new =   0.360254 * X  +  -0.560011 * Y  +   0.746060 * Z  + -53.738735 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.643901    2.497692  [ DEG:   -36.8928    143.1072 ]
  Theta =  -0.368540   -2.773052  [ DEG:   -21.1158   -158.8842 ]
  Phi   =  -1.546204    1.595388  [ DEG:   -88.5910     91.4090 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0371TS168_4-D2                               
REMARK     2: T0371_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0371TS168_4-D2.T0371_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  121  121   4.0   71   2.83  40.528     4.47
REMARK  ---------------------------------------------------------- 
MOLECULE T0371TS168_4-D2
PFRMAT TS
TARGET T0371
MODEL 4
PARENT N/A
ATOM     82  CA  SER    82      34.168  -1.755 -57.074  1.00 25.00           C
ATOM     83  CA  GLY    83      37.468  -0.266 -55.828  1.00 25.00           C
ATOM     84  CA  MET    84      39.419  -2.489 -58.261  1.00 25.00           C
ATOM     85  CA  ILE    85      37.149  -1.374 -61.137  1.00 25.00           C
ATOM     86  CA  THR    86      37.696   2.294 -60.180  1.00 25.00           C
ATOM     87  CA  LYS    87      41.484   1.737 -60.111  1.00 25.00           C
ATOM     88  CA  GLU    88      41.330   0.094 -63.567  1.00 25.00           C
ATOM     89  CA  TYR    89      39.303   3.053 -64.910  1.00 25.00           C
ATOM     90  CA  ILE    90      41.869   5.499 -63.462  1.00 25.00           C
ATOM     91  CA  ASP    91      44.712   3.523 -65.097  1.00 25.00           C
ATOM     92  CA  LEU    92      42.867   3.594 -68.452  1.00 25.00           C
ATOM     93  CA  LYS    93      46.162   4.717 -69.947  1.00 25.00           C
ATOM     94  CA  VAL    94      48.127   2.053 -71.856  1.00 25.00           C
ATOM     95  CA  ASP    95      51.927   2.322 -71.291  1.00 25.00           C
ATOM     96  CA  GLY    96      53.488   1.583 -67.862  1.00 25.00           C
ATOM     97  CA  GLY    97      51.530   0.640 -64.729  1.00 25.00           C
ATOM     98  CA  ILE    98      49.092  -0.133 -61.859  1.00 25.00           C
ATOM     99  CA  VAL    99      46.432   0.723 -59.280  1.00 25.00           C
ATOM    100  CA  ALA   100      44.291  -1.169 -56.758  1.00 25.00           C
ATOM    101  CA  TYR   101      42.535  -3.937 -54.886  1.00 25.00           C
ATOM    102  CA  LEU   102      42.466  -1.680 -51.876  1.00 25.00           C
ATOM    103  CA  GLY   103      42.118  -4.688 -49.596  1.00 25.00           C
ATOM    104  CA  THR   104      40.283  -7.935 -50.147  1.00 25.00           C
ATOM    105  CA  ALA   105      38.627 -11.234 -51.221  1.00 25.00           C
ATOM    106  CA  ASN   106      36.125 -10.179 -53.921  1.00 25.00           C
ATOM    107  CA  SER   107      38.137  -6.986 -54.573  1.00 25.00           C
ATOM    108  CA  ALA   108      41.352  -9.044 -54.870  1.00 25.00           C
ATOM    109  CA  ASN   109      39.634 -11.416 -57.339  1.00 25.00           C
ATOM    110  CA  TYR   110      38.428  -8.428 -59.407  1.00 25.00           C
ATOM    111  CA  LEU   111      41.977  -6.988 -59.444  1.00 25.00           C
ATOM    112  CA  VAL   112      43.363 -10.371 -60.586  1.00 25.00           C
ATOM    113  CA  SER   113      40.745 -10.530 -63.377  1.00 25.00           C
ATOM    114  CA  ASP   114      39.905  -9.022 -66.806  1.00 25.00           C
ATOM    115  CA  GLY   115      43.609  -8.276 -67.254  1.00 25.00           C
ATOM    116  CA  ILE   116      43.451  -5.986 -64.185  1.00 25.00           C
ATOM    117  CA  LYS   117      46.986  -6.942 -63.132  1.00 25.00           C
ATOM    118  CA  MET   118      46.405  -4.626 -60.207  1.00 25.00           C
ATOM    119  CA  LEU   119      47.148  -6.193 -56.766  1.00 25.00           C
ATOM    120  CA  PRO   120      48.488  -6.226 -53.212  1.00 25.00           C
ATOM    121  CA  VAL   121      46.265  -8.059 -50.722  1.00 25.00           C
ATOM    122  CA  SER   122      47.706 -11.630 -50.877  1.00 25.00           C
ATOM    123  CA  ALA   123      51.226 -13.011 -50.407  1.00 25.00           C
ATOM    124  CA  ILE   124      53.714 -10.285 -51.253  1.00 25.00           C
ATOM    125  CA  ASP   125      56.502 -12.625 -52.308  1.00 25.00           C
ATOM    126  CA  ASP   126      56.830 -12.157 -56.056  1.00 25.00           C
ATOM    127  CA  SER   127      57.793 -11.591 -59.669  1.00 25.00           C
ATOM    128  CA  ASN   128      55.938  -8.301 -59.152  1.00 25.00           C
ATOM    129  CA  ILE   129      57.484  -5.709 -56.881  1.00 25.00           C
ATOM    130  CA  GLY   130      59.369  -2.383 -57.351  1.00 25.00           C
ATOM    131  CA  GLU   131      56.551   0.082 -56.760  1.00 25.00           C
ATOM    132  CA  VAL   132      53.030  -0.317 -58.246  1.00 25.00           C
ATOM    133  CA  ASN   133      51.137  -1.858 -55.276  1.00 25.00           C
ATOM    134  CA  ALA   134      49.110   1.289 -55.738  1.00 25.00           C
ATOM    135  CA  LEU   135      46.850   0.740 -52.693  1.00 25.00           C
ATOM    136  CA  VAL   136      45.566   2.929 -49.904  1.00 25.00           C
ATOM    137  CA  LEU   137      42.009   2.082 -48.919  1.00 25.00           C
ATOM    138  CA  LEU   138      39.168  -0.400 -48.316  1.00 25.00           C
ATOM    139  CA  ASP   139      37.077  -3.605 -48.579  1.00 25.00           C
ATOM    140  CA  ASP   140      38.611  -4.698 -45.245  1.00 25.00           C
ATOM    141  CA  GLU   141      35.474  -6.406 -43.925  1.00 25.00           C
ATOM    142  CA  GLY   142      35.794 -10.186 -44.376  1.00 25.00           C
ATOM    143  CA  PHE   143      39.422 -10.415 -43.074  1.00 25.00           C
ATOM    144  CA  ASN   144      40.892  -8.458 -40.143  1.00 25.00           C
ATOM    145  CA  TRP   145      42.349  -6.062 -42.742  1.00 25.00           C
ATOM    146  CA  PHE   146      43.660  -2.903 -41.018  1.00 25.00           C
ATOM    147  CA  HIS   147      47.181  -4.404 -40.892  1.00 25.00           C
ATOM    148  CA  ASP   148      46.973  -5.266 -44.618  1.00 25.00           C
ATOM    149  CA  LEU   149      45.850  -1.691 -45.408  1.00 25.00           C
ATOM    150  CA  ASN   150      48.774  -0.296 -43.366  1.00 25.00           C
ATOM    151  CA  LYS   151      51.208  -2.580 -45.244  1.00 25.00           C
ATOM    152  CA  THR   152      49.765  -1.407 -48.591  1.00 25.00           C
ATOM    153  CA  VAL   153      50.159   2.246 -47.510  1.00 25.00           C
ATOM    154  CA  ASN   154      53.791   1.578 -46.496  1.00 25.00           C
ATOM    155  CA  LEU   155      54.462  -0.067 -49.888  1.00 25.00           C
ATOM    156  CA  LEU   156      52.923   2.946 -51.682  1.00 25.00           C
ATOM    157  CA  ARG   157      55.112   5.321 -49.625  1.00 25.00           C
ATOM    158  CA  LYS   158      58.218   3.258 -50.504  1.00 25.00           C
ATOM    159  CA  ARG   159      59.754   6.201 -52.360  1.00 25.00           C
ATOM    160  CA  THR   160      57.824   5.440 -55.548  1.00 25.00           C
ATOM    161  CA  ILE   161      54.197   4.496 -55.983  1.00 25.00           C
ATOM    162  CA  PRO   162      50.995   6.188 -54.969  1.00 25.00           C
ATOM    163  CA  ALA   163      47.651   5.686 -53.126  1.00 25.00           C
ATOM    164  CA  ILE   164      45.692   4.868 -56.231  1.00 25.00           C
ATOM    165  CA  VAL   165      42.652   3.608 -54.330  1.00 25.00           C
ATOM    166  CA  ALA   166      39.294   3.224 -52.552  1.00 25.00           C
ATOM    167  CA  ASN   167      37.479   4.520 -49.555  1.00 25.00           C
ATOM    168  CA  THR   168      33.825   4.817 -48.635  1.00 25.00           C
ATOM    169  CA  ASP   169      33.467   6.502 -45.269  1.00 25.00           C
ATOM    170  CA  ASN   170      31.696   5.360 -42.064  1.00 25.00           C
ATOM    171  CA  THR   171      31.391   2.124 -44.015  1.00 25.00           C
ATOM    172  CA  TYR   172      30.218   1.056 -47.473  1.00 25.00           C
ATOM    173  CA  PRO   173      26.800   0.251 -46.159  1.00 25.00           C
ATOM    174  CA  LEU   174      28.101  -2.650 -44.157  1.00 25.00           C
ATOM    175  CA  THR   175      28.195  -4.355 -40.762  1.00 25.00           C
ATOM    176  CA  LYS   176      25.806  -5.885 -38.232  1.00 25.00           C
ATOM    177  CA  THR   177      23.942  -2.598 -38.753  1.00 25.00           C
ATOM    178  CA  ASP   178      26.404  -0.022 -37.591  1.00 25.00           C
ATOM    179  CA  VAL   179      29.321   1.104 -39.740  1.00 25.00           C
ATOM    180  CA  ALA   180      32.765   1.469 -38.080  1.00 25.00           C
ATOM    181  CA  ILE   181      33.997  -1.636 -39.990  1.00 25.00           C
ATOM    182  CA  ALA   182      35.250  -0.826 -43.488  1.00 25.00           C
ATOM    183  CA  ILE   183      36.552   2.348 -45.123  1.00 25.00           C
ATOM    184  CA  GLY   184      36.763   3.252 -41.408  1.00 25.00           C
ATOM    185  CA  GLY   185      39.145   0.316 -40.803  1.00 25.00           C
ATOM    186  CA  VAL   186      41.327   1.449 -43.739  1.00 25.00           C
ATOM    187  CA  ALA   187      41.409   5.012 -42.334  1.00 25.00           C
ATOM    188  CA  THR   188      42.420   3.660 -38.896  1.00 25.00           C
ATOM    189  CA  MET   189      45.209   1.585 -40.505  1.00 25.00           C
ATOM    190  CA  ILE   190      46.452   4.676 -42.395  1.00 25.00           C
ATOM    191  CA  GLU   191      46.452   6.695 -39.140  1.00 25.00           C
ATOM    192  CA  SER   192      48.432   3.922 -37.391  1.00 25.00           C
ATOM    193  CA  ILE   193      50.965   3.886 -40.262  1.00 25.00           C
ATOM    194  CA  LEU   194      51.328   7.690 -40.024  1.00 25.00           C
ATOM    195  CA  GLY   195      54.709   7.951 -41.681  1.00 25.00           C
ATOM    196  CA  ARG   196      54.073   8.632 -45.360  1.00 25.00           C
ATOM    197  CA  ARG   197      51.251   8.790 -47.905  1.00 25.00           C
ATOM    198  CA  PHE   198      47.682   8.473 -46.670  1.00 25.00           C
ATOM    199  CA  ILE   199      46.400   9.857 -43.378  1.00 25.00           C
ATOM    200  CA  ARG   200      43.040   9.284 -45.161  1.00 25.00           C
ATOM    201  CA  PHE   201      39.776   8.724 -47.032  1.00 25.00           C
ATOM    202  CA  GLY   202      41.591   7.229 -50.034  1.00 25.00           C
TER
END
