
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  121 (  121),  selected  121 , name T0371TS393_1-D2
# Molecule2: number of CA atoms  121 (  915),  selected  121 , name T0371_D2.pdb
# PARAMETERS: T0371TS393_1-D2.T0371_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    70       133 - 202         4.79     6.93
  LCS_AVERAGE:     46.31

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21       140 - 160         1.94    11.63
  LONGEST_CONTINUOUS_SEGMENT:    21       182 - 202         1.80     8.04
  LCS_AVERAGE:     12.16

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       143 - 158         0.79    12.59
  LCS_AVERAGE:      6.78

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     S      82     S      82     12   13   35    11   12   12   19   26   32   37   52   64   76   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G      83     G      83     12   13   35    11   12   14   21   28   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     M      84     M      84     12   13   35    11   12   16   23   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I      85     I      85     12   13   35    11   12   12   13   19   33   45   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T      86     T      86     12   13   35    11   12   15   21   27   35   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K      87     K      87     12   13   35    11   12   12   22   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     E      88     E      88     12   13   35    11   12   16   22   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     Y      89     Y      89     12   13   35    11   12   15   21   27   35   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I      90     I      90     12   13   35    11   12   12   13   14   29   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     D      91     D      91     12   13   35    11   12   12   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L      92     L      92     12   13   35    11   12   16   22   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K      93     K      93     12   13   35     3   12   15   21   27   35   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V      94     V      94      5   13   35     3    5    5    7   10   15   32   50   65   72   81   88   93   96   97  101  102  106  108  109 
LCS_GDT     D      95     D      95      5    6   35     3    5    6   12   16   24   39   53   65   73   82   88   93   96   97  101  102  106  108  109 
LCS_GDT     G      96     G      96      5    8   35     3    5    5    9   15   24   35   50   63   72   81   88   93   96   97  101  102  106  108  109 
LCS_GDT     G      97     G      97      5   10   35     3    5    5    9   11   13   16   40   57   64   76   85   91   94   97  101  102  106  108  109 
LCS_GDT     I      98     I      98      5   10   35     0    6    9   10   13   15   20   26   33   64   69   79   85   93   96  100  102  106  108  109 
LCS_GDT     V      99     V      99      4   10   35     3    5    9   10   18   25   29   40   57   66   80   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     100     A     100      4   10   35     3    6    7   10   13   15   16   20   33   37   61   71   79   90   96  101  102  104  108  109 
LCS_GDT     Y     101     Y     101      5   12   35     6    9   16   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     102     L     102      5   12   35     3   12   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     103     G     103      5   12   35     2    4   15   21   28   36   45   60   70   76   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     104     T     104      9   12   35     4    8   10   11   14   25   34   40   48   56   67   72   86   91   97   99  101  106  108  109 
LCS_GDT     A     105     A     105      9   12   35     5    8   10   11   13   25   27   32   37   44   59   65   73   83   88   94  100  106  108  109 
LCS_GDT     N     106     N     106      9   12   35     5    8   10   11   13   25   27   30   37   44   51   64   73   83   88   94  100  106  108  109 
LCS_GDT     S     107     S     107      9   12   35     5    6   10   11   13   16   27   30   37   44   59   65   73   83   92   96  101  106  108  109 
LCS_GDT     A     108     A     108      9   12   35     5    7   10   11   13   25   27   30   37   44   51   61   73   83   88   94  100  106  108  109 
LCS_GDT     N     109     N     109      9   12   35     5    8   10   11   13   25   27   30   37   44   51   55   70   77   80   92   97   99  106  109 
LCS_GDT     Y     110     Y     110      9   12   35     5    8   10   11   13   25   27   30   37   44   51   63   73   83   88   94  100  106  108  109 
LCS_GDT     L     111     L     111      9   12   35     5    8   10   11   13   25   27   31   40   51   59   65   78   86   93   98  101  106  108  109 
LCS_GDT     V     112     V     112      9   12   35     5    8   10   11   13   25   27   30   37   45   51   63   73   83   85   94  100  106  108  109 
LCS_GDT     S     113     S     113      5   11   35     3    6    7   11   13   25   27   37   47   56   63   79   86   90   96   98  101  106  108  109 
LCS_GDT     D     114     D     114      5    9   35     3    6    9   10   14   23   37   46   60   73   82   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     115     G     115      5    9   35     3    6   15   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     116     I     116      5    9   35     3    6   17   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K     117     K     117      4    9   33     3    9   17   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     M     118     M     118      4    9   41     3   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     119     L     119      4    9   41     3    4    9   15   22   34   47   59   71   77   83   88   93   96   97  101  102  106  108  109 
LCS_GDT     P     120     P     120      4    9   41     3    4    8   14   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V     121     V     121      4    8   41     3    4    5   10   17   26   41   54   68   77   83   88   93   96   97  101  102  104  106  109 
LCS_GDT     S     122     S     122      4    8   41     3    5    8   14   21   33   48   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     123     A     123      3    6   41     3    3    4   10   21   33   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     124     I     124      3    6   41     3    4    8   15   22   34   47   61   71   77   84   88   93   96   97  101  102  105  108  109 
LCS_GDT     D     125     D     125      3    6   41     3    4    6   11   19   27   41   54   71   77   83   88   93   96   97  101  102  104  105  107 
LCS_GDT     D     126     D     126      3    6   41     1    3    4    8   15   23   32   42   51   57   68   73   78   86   91   96   97  100  102  105 
LCS_GDT     S     127     S     127      3    7   41     1    3    3    6   15   23   32   42   51   57   68   73   78   86   90   96   97   99  101  105 
LCS_GDT     N     128     N     128      3    7   41     3    3    3    5    9   17   25   29   37   46   52   65   73   79   87   91   93   98  100  101 
LCS_GDT     I     129     I     129      5    7   41     3    5    5    7    9   10   14   19   27   32   35   42   59   65   67   86   93   96   99  101 
LCS_GDT     G     130     G     130      5    7   41     3    5    5    7    9   12   17   21   27   32   51   55   59   68   77   86   93   96   99  101 
LCS_GDT     E     131     E     131      5    7   44     3    5    5    7    9   14   18   21   37   46   51   61   68   76   83   90   93   98  100  101 
LCS_GDT     V     132     V     132      5    7   45     3    5    5    7    9   14   18   21   27   35   43   52   60   72   78   87   93   96  100  101 
LCS_GDT     N     133     N     133      5    7   70     3    5    5    7    9   14   18   21   28   38   45   54   65   72   81   89   93   98  100  101 
LCS_GDT     A     134     A     134      4    8   70     1    4    5    7   10   14   19   27   37   47   61   71   82   90   92   96   98  100  103  105 
LCS_GDT     L     135     L     135      4    8   70     3    5    6    8   10   15   20   30   38   53   71   82   88   90   95  101  102  104  104  109 
LCS_GDT     V     136     V     136      4    8   70     3    5   11   15   18   22   35   48   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     137     L     137      4    8   70     3    5   13   15   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     138     L     138      4    8   70     3    5    6   16   24   36   45   60   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     D     139     D     139      4    8   70     3   10   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     D     140     D     140      4   21   70     3    6    9   12   21   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     E     141     E     141      4   21   70     3    4   16   17   28   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     142     G     142      4   21   70     3    3    4   13   23   33   41   54   63   76   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     F     143     F     143     16   21   70     3   12   16   17   24   33   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     N     144     N     144     16   21   70     4   13   16   17   20   34   45   57   67   76   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     W     145     W     145     16   21   70     4   13   16   17   23   31   47   58   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     F     146     F     146     16   21   70     4   13   16   17   21   28   40   46   53   64   72   82   91   95   96  101  102  106  108  109 
LCS_GDT     H     147     H     147     16   21   70     3   13   16   17   21   28   33   44   57   68   77   87   92   95   97  101  102  106  108  109 
LCS_GDT     D     148     D     148     16   21   70    11   13   16   17   23   34   47   59   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     149     L     149     16   21   70    11   13   16   17   23   31   45   55   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     N     150     N     150     16   21   70    11   13   16   17   22   29   40   47   61   72   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K     151     K     151     16   21   70    11   13   16   17   23   34   47   59   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     152     T     152     16   21   70    11   13   16   17   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V     153     V     153     16   21   70    11   13   16   17   23   29   40   51   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     N     154     N     154     16   21   70    11   13   16   17   23   30   41   59   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     155     L     155     16   21   70    11   13   16   17   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     156     L     156     16   21   70    11   13   16   17   23   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     R     157     R     157     16   21   70    11   13   16   17   23   30   42   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K     158     K     158     16   21   70    11   13   16   17   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     R     159     R     159      3   21   70     4   11   13   22   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     160     T     160      3   21   70     3    5   13   16   28   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     161     I     161      3   20   70     3    3   10   15   24   35   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     P     162     P     162      3   20   70     3    5   15   20   28   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     163     A     163      4   20   70     3    5   14   19   27   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     164     I     164      4   10   70     3    3    7   14   24   33   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V     165     V     165      4    9   70     3    4   12   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     166     A     166      4    9   70     3    3    8   15   24   36   48   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     N     167     N     167      3    7   70     3    3    4    6   11   25   30   41   56   72   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     168     T     168      4    8   70     3    3    7   12   18   29   39   53   67   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     D     169     D     169      4   13   70     4    4    7   15   23   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     N     170     N     170      4   17   70     4    5    8   15   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     171     T     171      5   17   70     4    5   11   15   24   34   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     Y     172     Y     172      6   17   70     4    7   11   14   24   32   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     P     173     P     173      6   17   70     3    7   11   14   24   34   49   60   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     174     L     174      6   17   70     3    7    9   14   18   29   40   56   67   76   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     175     T     175      6   17   70     3    7    9   14   18   24   39   54   65   75   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     K     176     K     176      6   17   70     3    4    8   13   17   24   35   50   63   72   81   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     177     T     177      6   17   70     3    7    9   14   18   24   35   49   63   72   80   88   93   96   97  101  102  106  108  109 
LCS_GDT     D     178     D     178      6   17   70     3    5    7   14   18   29   40   54   65   75   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V     179     V     179      4   17   70     3    7    9   14   18   29   40   54   65   75   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     180     A     180      4   17   70     3    8   10   14   18   22   35   54   65   75   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     181     I     181      4   18   70     3    5    9   14   19   32   46   60   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     182     A     182     14   21   70     6   12   18   24   29   36   48   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     183     I     183     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     184     G     184     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     185     G     185     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     V     186     V     186     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     A     187     A     187     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     T     188     T     188     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     M     189     M     189     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     190     I     190     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     E     191     E     191     14   21   70    10   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     S     192     S     192     14   21   70    10   13   18   24   29   36   48   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     193     I     193     14   21   70     4   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     L     194     L     194     14   21   70     9   13   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     195     G     195     14   21   70     0   13   18   21   29   36   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     R     196     R     196     14   21   70     2    4    9   16   24   32   44   54   67   77   83   88   93   96   97  101  102  106  108  109 
LCS_GDT     R     197     R     197      5   21   70     4   10   17   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     F     198     F     198      5   21   70     4   11   18   24   29   36   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     I     199     I     199      5   21   70     4    5   15   21   27   35   49   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     R     200     R     200      5   21   70     4    9   13   21   26   35   47   61   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     F     201     F     201      5   21   70     0    5   11   20   26   33   42   60   71   77   84   88   93   96   97  101  102  106  108  109 
LCS_GDT     G     202     G     202      3   21   70     0    5    6   11   14   23   32   44   57   72   83   88   93   96   97  101  102  106  108  109 
LCS_AVERAGE  LCS_A:  21.75  (   6.78   12.16   46.31 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     18     24     29     36     49     61     71     77     84     88     93     96     97    101    102    106    108    109 
GDT PERCENT_CA   9.09  10.74  14.88  19.83  23.97  29.75  40.50  50.41  58.68  63.64  69.42  72.73  76.86  79.34  80.17  83.47  84.30  87.60  89.26  90.08
GDT RMS_LOCAL    0.22   0.48   0.88   1.30   1.62   1.99   2.71   2.98   3.25   3.44   3.73   3.82   4.03   4.20   4.25   4.48   4.53   5.13   5.21   5.25
GDT RMS_ALL_CA  17.91   7.84   7.70   7.64   7.43   7.37   6.89   6.90   6.90   6.87   6.82   6.82   6.81   6.84   6.83   6.84   6.85   7.19   7.14   7.10

#      Molecule1      Molecule2       DISTANCE
LGA    S      82      S      82          5.369
LGA    G      83      G      83          1.920
LGA    M      84      M      84          2.326
LGA    I      85      I      85          3.987
LGA    T      86      T      86          3.321
LGA    K      87      K      87          1.608
LGA    E      88      E      88          2.120
LGA    Y      89      Y      89          2.982
LGA    I      90      I      90          3.592
LGA    D      91      D      91          3.016
LGA    L      92      L      92          1.249
LGA    K      93      K      93          3.473
LGA    V      94      V      94          6.341
LGA    D      95      D      95          7.207
LGA    G      96      G      96          8.328
LGA    G      97      G      97          8.859
LGA    I      98      I      98          8.989
LGA    V      99      V      99          6.304
LGA    A     100      A     100          8.075
LGA    Y     101      Y     101          3.403
LGA    L     102      L     102          1.948
LGA    G     103      G     103          4.439
LGA    T     104      T     104          9.815
LGA    A     105      A     105         13.110
LGA    N     106      N     106         13.775
LGA    S     107      S     107         11.788
LGA    A     108      A     108         12.769
LGA    N     109      N     109         15.408
LGA    Y     110      Y     110         13.746
LGA    L     111      L     111         11.580
LGA    V     112      V     112         14.338
LGA    S     113      S     113         11.490
LGA    D     114      D     114          8.070
LGA    G     115      G     115          2.906
LGA    I     116      I     116          3.694
LGA    K     117      K     117          3.701
LGA    M     118      M     118          1.032
LGA    L     119      L     119          4.176
LGA    P     120      P     120          2.954
LGA    V     121      V     121          6.122
LGA    S     122      S     122          3.520
LGA    A     123      A     123          3.689
LGA    I     124      I     124          3.761
LGA    D     125      D     125          5.927
LGA    D     126      D     126         11.843
LGA    S     127      S     127         12.772
LGA    N     128      N     128         14.037
LGA    I     129      I     129         16.545
LGA    G     130      G     130         16.401
LGA    E     131      E     131         14.731
LGA    V     132      V     132         14.635
LGA    N     133      N     133         14.033
LGA    A     134      A     134         10.009
LGA    L     135      L     135          8.516
LGA    V     136      V     136          5.577
LGA    L     137      L     137          2.970
LGA    L     138      L     138          4.092
LGA    D     139      D     139          1.957
LGA    D     140      D     140          3.859
LGA    E     141      E     141          2.500
LGA    G     142      G     142          5.268
LGA    F     143      F     143          3.911
LGA    N     144      N     144          5.235
LGA    W     145      W     145          5.008
LGA    F     146      F     146          8.037
LGA    H     147      H     147          7.141
LGA    D     148      D     148          4.500
LGA    L     149      L     149          4.754
LGA    N     150      N     150          5.853
LGA    K     151      K     151          4.340
LGA    T     152      T     152          3.193
LGA    V     153      V     153          4.746
LGA    N     154      N     154          4.330
LGA    L     155      L     155          2.573
LGA    L     156      L     156          3.301
LGA    R     157      R     157          3.995
LGA    K     158      K     158          2.918
LGA    R     159      R     159          2.056
LGA    T     160      T     160          1.885
LGA    I     161      I     161          3.097
LGA    P     162      P     162          1.350
LGA    A     163      A     163          1.807
LGA    I     164      I     164          3.137
LGA    V     165      V     165          3.020
LGA    A     166      A     166          3.625
LGA    N     167      N     167          6.656
LGA    T     168      T     168          5.393
LGA    D     169      D     169          3.513
LGA    N     170      N     170          3.970
LGA    T     171      T     171          3.456
LGA    Y     172      Y     172          3.933
LGA    P     173      P     173          4.329
LGA    L     174      L     174          5.906
LGA    T     175      T     175          8.043
LGA    K     176      K     176         10.591
LGA    T     177      T     177         10.087
LGA    D     178      D     178          6.699
LGA    V     179      V     179          6.661
LGA    A     180      A     180          6.614
LGA    I     181      I     181          4.531
LGA    A     182      A     182          3.612
LGA    I     183      I     183          2.395
LGA    G     184      G     184          2.305
LGA    G     185      G     185          2.855
LGA    V     186      V     186          2.572
LGA    A     187      A     187          1.553
LGA    T     188      T     188          2.356
LGA    M     189      M     189          3.118
LGA    I     190      I     190          2.622
LGA    E     191      E     191          2.687
LGA    S     192      S     192          3.578
LGA    I     193      I     193          2.890
LGA    L     194      L     194          2.861
LGA    G     195      G     195          3.966
LGA    R     196      R     196          5.084
LGA    R     197      R     197          2.856
LGA    F     198      F     198          1.472
LGA    I     199      I     199          2.906
LGA    R     200      R     200          3.783
LGA    F     201      F     201          4.188
LGA    G     202      G     202          5.470

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  121  121    4.0     61    2.98    41.116    35.610     1.983

LGA_LOCAL      RMSD =  2.977  Number of atoms =   61  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.860  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  6.792  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.521320 * X  +   0.728006 * Y  +   0.445233 * Z  +  35.179962
  Y_new =  -0.704898 * X  +   0.073298 * Y  +   0.705511 * Z  +   3.311283
  Z_new =   0.480982 * X  +  -0.681641 * Y  +   0.551382 * Z  + -54.750729 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.890650    2.250943  [ DEG:   -51.0305    128.9695 ]
  Theta =  -0.501774   -2.639818  [ DEG:   -28.7496   -151.2504 ]
  Phi   =  -0.934005    2.207588  [ DEG:   -53.5145    126.4855 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0371TS393_1-D2                               
REMARK     2: T0371_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0371TS393_1-D2.T0371_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  121  121   4.0   61   2.98  35.610     6.79
REMARK  ---------------------------------------------------------- 
MOLECULE T0371TS393_1-D2
PFRMAT TS
TARGET T0371
MODEL 1
PARENT N/A
ATOM     82  CA  SER    82      36.572   1.485 -56.070  1.00 25.00           C
ATOM     83  CA  GLY    83      35.351   0.186 -59.459  1.00 25.00           C
ATOM     84  CA  MET    84      35.540   3.724 -60.912  1.00 25.00           C
ATOM     85  CA  ILE    85      39.104   4.113 -59.567  1.00 25.00           C
ATOM     86  CA  THR    86      40.087   0.758 -61.129  1.00 25.00           C
ATOM     87  CA  LYS    87      38.590   1.852 -64.480  1.00 25.00           C
ATOM     88  CA  GLU    88      40.536   5.145 -64.302  1.00 25.00           C
ATOM     89  CA  TYR    89      43.766   3.224 -63.561  1.00 25.00           C
ATOM     90  CA  ILE    90      43.107   0.916 -66.545  1.00 25.00           C
ATOM     91  CA  ASP    91      42.515   3.955 -68.797  1.00 25.00           C
ATOM     92  CA  LEU    92      45.789   5.526 -67.579  1.00 25.00           C
ATOM     93  CA  LYS    93      49.136   3.710 -67.306  1.00 25.00           C
ATOM     94  CA  VAL    94      50.837   6.884 -68.483  1.00 25.00           C
ATOM     95  CA  ASP    95      54.512   7.527 -67.653  1.00 25.00           C
ATOM     96  CA  GLY    96      53.840   5.091 -64.745  1.00 25.00           C
ATOM     97  CA  GLY    97      51.136   4.141 -62.191  1.00 25.00           C
ATOM     98  CA  ILE    98      47.848   3.067 -60.585  1.00 25.00           C
ATOM     99  CA  VAL    99      44.744   1.880 -58.656  1.00 25.00           C
ATOM    100  CA  ALA   100      42.131   0.903 -56.072  1.00 25.00           C
ATOM    101  CA  TYR   101      44.386  -1.308 -53.939  1.00 25.00           C
ATOM    102  CA  LEU   102      43.555  -3.197 -50.778  1.00 25.00           C
ATOM    103  CA  GLY   103      44.101  -6.119 -48.470  1.00 25.00           C
ATOM    104  CA  THR   104      47.655  -6.830 -49.582  1.00 25.00           C
ATOM    105  CA  ALA   105      50.991  -6.747 -51.336  1.00 25.00           C
ATOM    106  CA  ASN   106      49.080  -8.172 -54.333  1.00 25.00           C
ATOM    107  CA  SER   107      47.602  -4.716 -55.067  1.00 25.00           C
ATOM    108  CA  ALA   108      51.096  -3.158 -54.894  1.00 25.00           C
ATOM    109  CA  ASN   109      52.430  -5.823 -57.299  1.00 25.00           C
ATOM    110  CA  TYR   110      49.542  -5.123 -59.715  1.00 25.00           C
ATOM    111  CA  LEU   111      50.280  -1.368 -59.549  1.00 25.00           C
ATOM    112  CA  VAL   112      53.982  -2.040 -60.269  1.00 25.00           C
ATOM    113  CA  SER   113      53.027  -4.228 -63.264  1.00 25.00           C
ATOM    114  CA  ASP   114      51.701  -3.344 -66.761  1.00 25.00           C
ATOM    115  CA  GLY   115      48.381  -2.883 -68.631  1.00 25.00           C
ATOM    116  CA  ILE   116      47.097  -2.169 -65.122  1.00 25.00           C
ATOM    117  CA  LYS   117      46.105  -5.306 -63.158  1.00 25.00           C
ATOM    118  CA  MET   118      45.335  -7.316 -60.013  1.00 25.00           C
ATOM    119  CA  LEU   119      43.848  -7.206 -56.544  1.00 25.00           C
ATOM    120  CA  PRO   120      44.873 -10.304 -54.494  1.00 25.00           C
ATOM    121  CA  VAL   121      43.899 -10.315 -50.823  1.00 25.00           C
ATOM    122  CA  SER   122      47.100 -12.210 -50.008  1.00 25.00           C
ATOM    123  CA  ALA   123      50.255 -14.359 -49.470  1.00 25.00           C
ATOM    124  CA  ILE   124      51.786 -11.974 -52.019  1.00 25.00           C
ATOM    125  CA  ASP   125      54.770 -14.085 -53.009  1.00 25.00           C
ATOM    126  CA  ASP   126      53.986 -17.790 -52.855  1.00 25.00           C
ATOM    127  CA  SER   127      50.530 -18.520 -54.233  1.00 25.00           C
ATOM    128  CA  ASN   128      47.086 -17.144 -53.495  1.00 25.00           C
ATOM    129  CA  ILE   129      44.333 -15.247 -55.330  1.00 25.00           C
ATOM    130  CA  GLY   130      47.073 -14.319 -57.756  1.00 25.00           C
ATOM    131  CA  GLU   131      44.534 -12.806 -60.225  1.00 25.00           C
ATOM    132  CA  VAL   132      41.502 -10.811 -59.130  1.00 25.00           C
ATOM    133  CA  ASN   133      40.905  -7.548 -61.070  1.00 25.00           C
ATOM    134  CA  ALA   134      41.578  -3.804 -61.620  1.00 25.00           C
ATOM    135  CA  LEU   135      40.668  -3.500 -57.972  1.00 25.00           C
ATOM    136  CA  VAL   136      39.920  -4.239 -54.288  1.00 25.00           C
ATOM    137  CA  LEU   137      38.974  -1.382 -52.016  1.00 25.00           C
ATOM    138  CA  LEU   138      39.676  -0.808 -48.339  1.00 25.00           C
ATOM    139  CA  ASP   139      38.469  -4.397 -47.830  1.00 25.00           C
ATOM    140  CA  ASP   140      39.949  -7.109 -45.557  1.00 25.00           C
ATOM    141  CA  GLU   141      37.968 -10.375 -45.275  1.00 25.00           C
ATOM    142  CA  GLY   142      38.685 -11.215 -41.631  1.00 25.00           C
ATOM    143  CA  PHE   143      42.284  -9.974 -41.306  1.00 25.00           C
ATOM    144  CA  ASN   144      41.881  -7.796 -38.144  1.00 25.00           C
ATOM    145  CA  TRP   145      39.895  -5.579 -40.538  1.00 25.00           C
ATOM    146  CA  PHE   146      41.354  -2.303 -39.193  1.00 25.00           C
ATOM    147  CA  HIS   147      44.808  -3.933 -38.901  1.00 25.00           C
ATOM    148  CA  ASP   148      44.537  -5.208 -42.502  1.00 25.00           C
ATOM    149  CA  LEU   149      43.565  -1.702 -43.697  1.00 25.00           C
ATOM    150  CA  ASN   150      46.560  -0.210 -41.835  1.00 25.00           C
ATOM    151  CA  LYS   151      48.880  -2.800 -43.441  1.00 25.00           C
ATOM    152  CA  THR   152      47.466  -1.959 -46.899  1.00 25.00           C
ATOM    153  CA  VAL   153      48.025   1.773 -46.247  1.00 25.00           C
ATOM    154  CA  ASN   154      51.633   1.070 -45.169  1.00 25.00           C
ATOM    155  CA  LEU   155      52.208  -0.985 -48.350  1.00 25.00           C
ATOM    156  CA  LEU   156      50.789   1.867 -50.477  1.00 25.00           C
ATOM    157  CA  ARG   157      53.093   4.364 -48.712  1.00 25.00           C
ATOM    158  CA  LYS   158      56.100   2.079 -49.352  1.00 25.00           C
ATOM    159  CA  ARG   159      57.886   3.834 -52.240  1.00 25.00           C
ATOM    160  CA  THR   160      55.218   6.270 -53.430  1.00 25.00           C
ATOM    161  CA  ILE   161      51.434   6.020 -53.729  1.00 25.00           C
ATOM    162  CA  PRO   162      48.513   4.801 -55.783  1.00 25.00           C
ATOM    163  CA  ALA   163      45.686   3.522 -53.660  1.00 25.00           C
ATOM    164  CA  ILE   164      42.526   3.193 -51.481  1.00 25.00           C
ATOM    165  CA  VAL   165      40.655   5.999 -49.815  1.00 25.00           C
ATOM    166  CA  ALA   166      37.515   3.943 -49.221  1.00 25.00           C
ATOM    167  CA  ASN   167      35.027   1.067 -49.566  1.00 25.00           C
ATOM    168  CA  THR   168      33.591   0.585 -46.150  1.00 25.00           C
ATOM    169  CA  ASP   169      33.278   3.461 -43.720  1.00 25.00           C
ATOM    170  CA  ASN   170      33.077   2.444 -40.084  1.00 25.00           C
ATOM    171  CA  THR   171      29.975   0.494 -41.216  1.00 25.00           C
ATOM    172  CA  TYR   172      28.860  -1.389 -44.313  1.00 25.00           C
ATOM    173  CA  PRO   173      26.486  -3.280 -42.020  1.00 25.00           C
ATOM    174  CA  LEU   174      27.394  -6.443 -43.814  1.00 25.00           C
ATOM    175  CA  THR   175      25.016  -9.049 -42.524  1.00 25.00           C
ATOM    176  CA  LYS   176      23.825 -10.895 -39.421  1.00 25.00           C
ATOM    177  CA  THR   177      26.572  -9.022 -37.577  1.00 25.00           C
ATOM    178  CA  ASP   178      28.916  -6.139 -38.438  1.00 25.00           C
ATOM    179  CA  VAL   179      31.504  -4.819 -40.805  1.00 25.00           C
ATOM    180  CA  ALA   180      33.367  -4.974 -44.106  1.00 25.00           C
ATOM    181  CA  ILE   181      36.388  -2.793 -43.174  1.00 25.00           C
ATOM    182  CA  ALA   182      37.188   0.424 -41.220  1.00 25.00           C
ATOM    183  CA  ILE   183      38.497   1.552 -44.608  1.00 25.00           C
ATOM    184  CA  GLY   184      38.237   5.370 -44.462  1.00 25.00           C
ATOM    185  CA  GLY   185      39.842   5.372 -40.984  1.00 25.00           C
ATOM    186  CA  VAL   186      42.683   3.147 -42.269  1.00 25.00           C
ATOM    187  CA  ALA   187      43.230   5.513 -45.230  1.00 25.00           C
ATOM    188  CA  THR   188      43.337   8.510 -42.848  1.00 25.00           C
ATOM    189  CA  MET   189      45.892   6.698 -40.644  1.00 25.00           C
ATOM    190  CA  ILE   190      48.036   5.924 -43.722  1.00 25.00           C
ATOM    191  CA  GLU   191      47.875   9.599 -44.788  1.00 25.00           C
ATOM    192  CA  SER   192      48.926  10.691 -41.270  1.00 25.00           C
ATOM    193  CA  ILE   193      51.860   8.231 -41.356  1.00 25.00           C
ATOM    194  CA  LEU   194      52.929   9.588 -44.774  1.00 25.00           C
ATOM    195  CA  GLY   195      51.718  12.754 -46.494  1.00 25.00           C
ATOM    196  CA  ARG   196      50.730  10.624 -49.448  1.00 25.00           C
ATOM    197  CA  ARG   197      47.507  12.627 -49.447  1.00 25.00           C
ATOM    198  CA  PHE   198      45.896   9.307 -50.368  1.00 25.00           C
ATOM    199  CA  ILE   199      45.980   8.689 -54.107  1.00 25.00           C
ATOM    200  CA  ARG   200      42.429   7.417 -54.504  1.00 25.00           C
ATOM    201  CA  PHE   201      39.220   5.332 -54.913  1.00 25.00           C
ATOM    202  CA  GLY   202      37.103   7.079 -52.282  1.00 25.00           C
TER
END
