
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  121 (  121),  selected  121 , name T0371TS168_3-D2
# Molecule2: number of CA atoms  121 (  915),  selected  121 , name T0371_D2.pdb
# PARAMETERS: T0371TS168_3-D2.T0371_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    86       110 - 195         4.99     8.62
  LONGEST_CONTINUOUS_SEGMENT:    86       111 - 196         4.93     8.59
  LONGEST_CONTINUOUS_SEGMENT:    86       112 - 197         4.92     8.57
  LONGEST_CONTINUOUS_SEGMENT:    86       113 - 198         4.89     8.56
  LCS_AVERAGE:     57.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       144 - 159         1.62    25.77
  LCS_AVERAGE:      9.16

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       144 - 158         0.93    25.14
  LCS_AVERAGE:      6.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     S      82     S      82     12   14   22    11   11   11   12   12   13   15   22   34   44   54   65   76   81   86   89   94   96   98  102 
LCS_GDT     G      83     G      83     12   14   22    11   11   11   12   12   13   17   23   39   55   64   70   77   82   87   89   94   96   98  102 
LCS_GDT     M      84     M      84     12   14   22    11   11   11   12   12   17   25   33   47   60   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I      85     I      85     12   14   22    11   11   11   12   12   17   23   31   42   58   68   72   78   82   87   89   92   96   98  102 
LCS_GDT     T      86     T      86     12   14   22    11   11   11   12   12   13   21   29   40   55   68   72   78   82   87   89   92   96   98  102 
LCS_GDT     K      87     K      87     12   14   22    11   11   11   12   15   17   23   33   43   60   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     E      88     E      88     12   14   22    11   11   11   12   12   13   17   21   22   37   51   57   71   76   82   87   92   94   97   98 
LCS_GDT     Y      89     Y      89     12   14   22    11   11   11   12   12   14   19   25   33   42   48   55   64   69   79   86   89   91   96   98 
LCS_GDT     I      90     I      90     12   14   22    11   11   11   12   12   17   22   25   36   45   55   63   72   77   83   89   92   95   97   98 
LCS_GDT     D      91     D      91     12   14   22    11   11   11   12   12   13   15   21   22   24   41   46   52   62   73   80   86   91   94   98 
LCS_GDT     L      92     L      92     12   14   22    11   11   11   12   12   13   15   19   22   23   25   34   38   58   63   69   74   79   85   89 
LCS_GDT     K      93     K      93     12   14   22     3    5    5   12   12   13   15   19   22   23   29   34   38   42   48   52   63   71   73   86 
LCS_GDT     V      94     V      94      5   14   22     3    5    5    8   10   13   15   19   22   23   29   34   38   42   48   54   62   71   73   82 
LCS_GDT     D      95     D      95      5   14   22     3    5    5    8   10   13   15   19   22   23   25   26   30   33   35   40   44   50   58   63 
LCS_GDT     G      96     G      96      4   10   22     3    4    4    8    9   13   15   19   22   23   25   26   30   33   35   38   59   63   75   78 
LCS_GDT     G      97     G      97      4    9   22     0    4    4    8    9   12   15   19   22   23   25   26   30   33   35   37   42   49   53   78 
LCS_GDT     I      98     I      98      3    9   22     0    3    6    8    9   12   15   19   22   23   25   26   30   33   35   37   39   49   53   66 
LCS_GDT     V      99     V      99      4    9   22     2    4    6    7    8   12   15   19   22   24   27   29   36   47   56   67   73   86   94   97 
LCS_GDT     A     100     A     100      4    9   22     3    4    6    8    9   10   13   15   19   24   33   37   51   58   82   86   91   95   97  102 
LCS_GDT     Y     101     Y     101      4    9   22     3    4    6    8   10   12   14   30   47   54   67   73   77   82   87   89   94   96   98  102 
LCS_GDT     L     102     L     102      4    9   25     3    4    6   13   14   16   20   23   27   41   47   56   67   74   79   86   94   96   98  102 
LCS_GDT     G     103     G     103      4    8   25     3    4    5    7    9    9   11   16   16   26   36   45   60   70   78   86   94   96   98  102 
LCS_GDT     T     104     T     104      4    9   25     3    4    6    7    9    9   11   16   16   20   22   25   29   32   37   43   48   55   74   87 
LCS_GDT     A     105     A     105      8    9   25     5    7    8    8    9    9   10   16   16   19   20   25   29   32   37   43   48   55   60   63 
LCS_GDT     N     106     N     106      8    9   25     5    7    8    8    9    9   11   16   16   20   23   26   29   32   49   63   78   81   85   87 
LCS_GDT     S     107     S     107      8    9   25     5    5    8    8    8    9   12   16   18   20   23   26   34   41   59   63   78   82   85   90 
LCS_GDT     A     108     A     108      8    9   25     5    7    8    8    8    9   10   13   15   20   23   26   26   32   59   75   78   82   85   91 
LCS_GDT     N     109     N     109      8    9   79     5    7    8    8    8    9   10   15   19   24   36   46   60   68   74   80   86   90   96   99 
LCS_GDT     Y     110     Y     110      8    9   86     5    7    8    8    8    9   12   29   35   41   52   62   69   75   83   86   94   96   98  102 
LCS_GDT     L     111     L     111      8    9   86     5    7    8    8    8    9   16   17   34   41   47   57   62   74   78   86   94   96   98  102 
LCS_GDT     V     112     V     112      8    9   86     5    7    8    8    8   14   17   29   35   41   51   62   68   75   83   86   94   96   98  102 
LCS_GDT     S     113     S     113      4    9   86     3    4    7   10   18   27   37   45   54   61   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     114     D     114      4    9   86     4    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     115     G     115      5    9   86     4    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     116     I     116      5    9   86     3    4   12   15   21   30   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     K     117     K     117      5    9   86     3    7   10   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     M     118     M     118      5    9   86     3    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     119     L     119      5    9   86     3    5    6    7   17   28   34   41   52   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     P     120     P     120      4    9   86     3    5    6   10   17   28   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     V     121     V     121      4    9   86     3    5    6   10   21   29   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     S     122     S     122      3    7   86     3    3    8   16   19   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     123     A     123      3    7   86     3    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     124     I     124      3    7   86     3    4   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     125     D     125      4    7   86     3    5   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     126     D     126      4    7   86     3    3    4   12   21   30   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     S     127     S     127      4    7   86     3    5   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     128     N     128      4    7   86     3    4    8   14   22   27   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     129     I     129      4    5   86     3    5   10   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     130     G     130      5    6   86     3    4    6    9   11   19   32   41   51   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     E     131     E     131      5    6   86     3    4    6    9   11   17   28   41   48   57   67   73   78   82   87   89   94   96   98  102 
LCS_GDT     V     132     V     132      5    6   86     3    4    6   11   20   28   36   41   51   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     133     N     133      5    7   86     0    4    6    9   17   27   31   39   49   56   67   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     134     A     134      5    7   86     0    4    6    9   17   27   33   39   49   56   67   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     135     L     135      4    7   86     3    3    5   13   21   29   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     V     136     V     136      4    7   86     3    4    6   15   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     137     L     137      4    7   86     3    3    5   12   18   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     138     L     138      4    7   86     3    3    6   13   20   28   36   43   52   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     139     D     139      3    7   86     3    3    5   13   20   28   36   43   52   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     140     D     140      3    7   86     1    5    7   15   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     E     141     E     141      3    7   86     3    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     142     G     142      3    5   86     3    4    5   11   15   22   30   41   49   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     F     143     F     143      3    5   86     3    3    3    5   12   15   18   25   36   46   59   72   76   82   87   89   92   95   98  102 
LCS_GDT     N     144     N     144     15   16   86     4    4   13   14   15   17   27   40   48   56   66   73   78   82   87   89   94   96   98  102 
LCS_GDT     W     145     W     145     15   16   86     4   12   14   14   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     F     146     F     146     15   16   86     4   13   14   14   15   18   25   36   47   57   66   73   77   82   87   89   94   96   98  102 
LCS_GDT     H     147     H     147     15   16   86     4   13   14   14   15   16   22   31   40   51   63   72   77   82   87   89   94   96   98  102 
LCS_GDT     D     148     D     148     15   16   86    11   13   14   14   19   28   36   43   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     149     L     149     15   16   86    11   13   14   14   21   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     150     N     150     15   16   86    11   13   14   14   15   17   24   34   47   56   67   73   78   82   87   89   94   96   98  102 
LCS_GDT     K     151     K     151     15   16   86    11   13   14   14   16   22   34   41   51   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     152     T     152     15   16   86    11   13   14   14   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     V     153     V     153     15   16   86    11   13   14   14   15   15   23   30   49   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     154     N     154     15   16   86    11   13   14   14   15   17   33   41   51   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     155     L     155     15   16   86    11   13   14   14   20   29   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     156     L     156     15   16   86    11   13   14   14   18   26   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     R     157     R     157     15   16   86    11   13   14   14   15   16   25   38   51   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     K     158     K     158     15   16   86    11   13   14   14   20   29   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     R     159     R     159      4   16   86     3    3    4    8   12   22   31   40   54   60   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     160     T     160      4    8   86     4    4    7   13   21   29   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     161     I     161      4    8   86     4    4    8   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     P     162     P     162      5    8   86     4    4   10   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     163     A     163      5    8   86     4    4    6    9   15   25   32   43   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     164     I     164      5    8   86     4    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     V     165     V     165      5    8   86     3    4   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     166     A     166      5    7   86     3    4    5   11   20   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     167     N     167      3    9   86     3    3    5   11   20   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     168     T     168      4    9   86     3    4    6    8   13   20   33   44   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     D     169     D     169      4   12   86     3    4    6    9   17   26   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     N     170     N     170      4   13   86     3    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     171     T     171      4   13   86     4    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     Y     172     Y     172      4   13   86     4    7   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     P     173     P     173      4   13   86     3    3    6    8   19   27   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     L     174     L     174      4   13   86     3    4    8   14   20   27   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     175     T     175      4   13   86     3    4    7   15   20   27   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     K     176     K     176      5   13   86     3    4    8   13   14   25   32   38   48   56   66   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     177     T     177      5   13   86     3    4    8   13   14   17   29   34   40   53   64   69   74   80   86   89   94   96   98  102 
LCS_GDT     D     178     D     178      5   13   86     3    4    8   13   14   24   32   37   48   56   65   72   78   82   87   89   94   96   98  102 
LCS_GDT     V     179     V     179      5   13   86     3    4    8   13   15   25   32   41   52   60   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     180     A     180      5   13   86     3    4    8   13   14   22   32   42   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     181     I     181      4   13   86     3    4    6   10   16   24   31   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     182     A     182     13   14   86     1    4    7   13   16   24   31   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     I     183     I     183     13   15   86    10   12   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     184     G     184     13   15   86    10   12   12   12   13   15   20   28   47   56   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     185     G     185     13   15   86    10   12   12   12   13   15   16   19   34   43   53   61   71   81   87   89   94   96   98  102 
LCS_GDT     V     186     V     186     13   15   86    10   12   12   13   14   21   28   41   52   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     A     187     A     187     13   15   86    10   12   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     T     188     T     188     13   15   86    10   12   12   12   13   15   16   22   34   41   53   66   71   80   87   89   94   96   98  102 
LCS_GDT     M     189     M     189     13   15   86    10   12   12   12   13   15   18   22   34   43   53   64   72   81   87   89   94   96   98  102 
LCS_GDT     I     190     I     190     13   15   86    10   12   12   12   16   26   35   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     E     191     E     191     13   15   86    10   12   12   12   17   26   36   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     S     192     S     192     13   15   86    10   12   12   12   13   15   19   25   34   43   53   61   67   71   83   89   92   95   98  102 
LCS_GDT     I     193     I     193     13   15   86     5   12   12   13   14   17   24   29   45   58   68   72   78   82   87   89   94   96   98  102 
LCS_GDT     L     194     L     194     13   15   86     9   12   12   16   23   30   37   45   54   62   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     G     195     G     195      4   15   86     3    4    7   13   20   28   36   45   54   60   68   73   78   82   87   89   94   96   98  102 
LCS_GDT     R     196     R     196      4   15   86     3    3    7    9   20   28   33   38   46   55   66   72   77   81   85   89   94   96   98  102 
LCS_GDT     R     197     R     197      4   15   86     3    3    5    8   13   22   28   32   37   44   50   56   66   74   80   86   88   93   98  102 
LCS_GDT     F     198     F     198      5    6   86     4    5    6    7   15   22   28   33   39   44   50   59   67   74   81   86   88   93   98  102 
LCS_GDT     I     199     I     199      5    6   21     4    5    6    6    9   16   22   31   36   42   48   53   62   70   78   83   88   91   94   99 
LCS_GDT     R     200     R     200      5    6   21     4    5    6    9   20   28   33   38   46   52   57   72   77   81   84   88   94   96   98  102 
LCS_GDT     F     201     F     201      5    6   20     4    5    6    8   15   28   33   38   46   52   57   67   77   81   84   88   94   96   98  102 
LCS_GDT     G     202     G     202      5    6   19     3    5    6    6    6   23   33   38   46   54   67   73   77   82   86   89   94   96   98  102 
LCS_AVERAGE  LCS_A:  24.32  (   6.22    9.16   57.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     14     16     23     30     37     45     54     62     68     73     78     82     87     89     94     96     98    102 
GDT PERCENT_CA   9.09  10.74  11.57  13.22  19.01  24.79  30.58  37.19  44.63  51.24  56.20  60.33  64.46  67.77  71.90  73.55  77.69  79.34  80.99  84.30
GDT RMS_LOCAL    0.22   0.49   0.57   1.41   1.86   2.21   2.54   2.82   3.20   3.53   3.72   3.93   4.21   4.37   4.66   4.75   5.15   5.27   5.34   5.62
GDT RMS_ALL_CA  26.11  24.77  24.92   8.59   8.58   8.56   8.65   8.62   8.62   8.54   8.56   8.58   8.51   8.52   8.50   8.52   8.65   8.66   8.58   8.61

#      Molecule1      Molecule2       DISTANCE
LGA    S      82      S      82          9.339
LGA    G      83      G      83          6.999
LGA    M      84      M      84          5.663
LGA    I      85      I      85          8.664
LGA    T      86      T      86          8.179
LGA    K      87      K      87          6.797
LGA    E      88      E      88         11.941
LGA    Y      89      Y      89         13.989
LGA    I      90      I      90         11.203
LGA    D      91      D      91         14.703
LGA    L      92      L      92         19.637
LGA    K      93      K      93         22.016
LGA    V      94      V      94         21.096
LGA    D      95      D      95         25.205
LGA    G      96      G      96         22.079
LGA    G      97      G      97         20.182
LGA    I      98      I      98         18.660
LGA    V      99      V      99         13.009
LGA    A     100      A     100          9.497
LGA    Y     101      Y     101          6.534
LGA    L     102      L     102          9.461
LGA    G     103      G     103         10.110
LGA    T     104      T     104         15.639
LGA    A     105      A     105         18.379
LGA    N     106      N     106         16.465
LGA    S     107      S     107         16.435
LGA    A     108      A     108         15.626
LGA    N     109      N     109         13.315
LGA    Y     110      Y     110         10.673
LGA    L     111      L     111         11.146
LGA    V     112      V     112         10.629
LGA    S     113      S     113          4.154
LGA    D     114      D     114          2.359
LGA    G     115      G     115          2.539
LGA    I     116      I     116          3.650
LGA    K     117      K     117          2.250
LGA    M     118      M     118          1.592
LGA    L     119      L     119          4.851
LGA    P     120      P     120          3.939
LGA    V     121      V     121          3.551
LGA    S     122      S     122          2.871
LGA    A     123      A     123          0.956
LGA    I     124      I     124          2.291
LGA    D     125      D     125          0.764
LGA    D     126      D     126          3.233
LGA    S     127      S     127          2.129
LGA    N     128      N     128          3.677
LGA    I     129      I     129          2.729
LGA    G     130      G     130          5.758
LGA    E     131      E     131          6.409
LGA    V     132      V     132          5.002
LGA    N     133      N     133          6.137
LGA    A     134      A     134          5.934
LGA    L     135      L     135          3.591
LGA    V     136      V     136          2.689
LGA    L     137      L     137          3.283
LGA    L     138      L     138          4.410
LGA    D     139      D     139          4.579
LGA    D     140      D     140          2.260
LGA    E     141      E     141          1.657
LGA    G     142      G     142          6.203
LGA    F     143      F     143          9.033
LGA    N     144      N     144          7.787
LGA    W     145      W     145          2.486
LGA    F     146      F     146          7.378
LGA    H     147      H     147          8.841
LGA    D     148      D     148          4.683
LGA    L     149      L     149          3.048
LGA    N     150      N     150          6.878
LGA    K     151      K     151          5.769
LGA    T     152      T     152          2.321
LGA    V     153      V     153          5.222
LGA    N     154      N     154          5.792
LGA    L     155      L     155          3.419
LGA    L     156      L     156          3.759
LGA    R     157      R     157          5.408
LGA    K     158      K     158          3.971
LGA    R     159      R     159          5.127
LGA    T     160      T     160          3.727
LGA    I     161      I     161          2.269
LGA    P     162      P     162          2.182
LGA    A     163      A     163          4.810
LGA    I     164      I     164          1.503
LGA    V     165      V     165          2.360
LGA    A     166      A     166          3.441
LGA    N     167      N     167          3.285
LGA    T     168      T     168          4.217
LGA    D     169      D     169          3.768
LGA    N     170      N     170          1.358
LGA    T     171      T     171          1.534
LGA    Y     172      Y     172          1.079
LGA    P     173      P     173          3.932
LGA    L     174      L     174          3.450
LGA    T     175      T     175          3.251
LGA    K     176      K     176          5.727
LGA    T     177      T     177          7.086
LGA    D     178      D     178          6.039
LGA    V     179      V     179          4.644
LGA    A     180      A     180          4.860
LGA    I     181      I     181          5.282
LGA    A     182      A     182          5.281
LGA    I     183      I     183          1.482
LGA    G     184      G     184          5.363
LGA    G     185      G     185          8.312
LGA    V     186      V     186          5.842
LGA    A     187      A     187          0.947
LGA    T     188      T     188          7.525
LGA    M     189      M     189          9.155
LGA    I     190      I     190          4.617
LGA    E     191      E     191          3.787
LGA    S     192      S     192          9.690
LGA    I     193      I     193          8.341
LGA    L     194      L     194          1.807
LGA    G     195      G     195          3.764
LGA    R     196      R     196          6.341
LGA    R     197      R     197         10.067
LGA    F     198      F     198          9.521
LGA    I     199      I     199         11.295
LGA    R     200      R     200          7.294
LGA    F     201      F     201          7.502
LGA    G     202      G     202          5.719

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  121  121    4.0     45    2.82    33.678    28.841     1.542

LGA_LOCAL      RMSD =  2.818  Number of atoms =   45  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  8.618  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  8.462  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.106182 * X  +   0.921108 * Y  +   0.374547 * Z  +  34.075466
  Y_new =  -0.366373 * X  +  -0.313934 * Y  +   0.875909 * Z  +   3.336079
  Z_new =   0.924390 * X  +  -0.230229 * Y  +   0.304135 * Z  + -54.661736 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.647964    2.493628  [ DEG:   -37.1256    142.8744 ]
  Theta =  -1.179432   -1.962160  [ DEG:   -67.5765   -112.4235 ]
  Phi   =  -1.288707    1.852886  [ DEG:   -73.8375    106.1625 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0371TS168_3-D2                               
REMARK     2: T0371_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0371TS168_3-D2.T0371_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  121  121   4.0   45   2.82  28.841     8.46
REMARK  ---------------------------------------------------------- 
MOLECULE T0371TS168_3-D2
PFRMAT TS
TARGET T0371
MODEL 3
PARENT N/A
ATOM     82  CA  SER    82      38.007   2.091 -64.878  1.00 25.00           C
ATOM     83  CA  GLY    83      40.537   1.424 -62.080  1.00 25.00           C
ATOM     84  CA  MET    84      37.932  -0.649 -60.186  1.00 25.00           C
ATOM     85  CA  ILE    85      37.187  -2.659 -63.359  1.00 25.00           C
ATOM     86  CA  THR    86      40.931  -3.286 -63.870  1.00 25.00           C
ATOM     87  CA  LYS    87      41.255  -4.455 -60.237  1.00 25.00           C
ATOM     88  CA  GLU    88      38.280  -6.819 -60.707  1.00 25.00           C
ATOM     89  CA  TYR    89      39.869  -8.227 -63.894  1.00 25.00           C
ATOM     90  CA  ILE    90      43.173  -8.771 -62.037  1.00 25.00           C
ATOM     91  CA  ASP    91      41.317 -10.572 -59.212  1.00 25.00           C
ATOM     92  CA  LEU    92      39.538 -12.800 -61.769  1.00 25.00           C
ATOM     93  CA  LYS    93      42.476 -15.254 -61.343  1.00 25.00           C
ATOM     94  CA  VAL    94      43.331 -16.802 -57.990  1.00 25.00           C
ATOM     95  CA  ASP    95      41.376 -19.273 -55.792  1.00 25.00           C
ATOM     96  CA  GLY    96      39.268 -16.509 -54.150  1.00 25.00           C
ATOM     97  CA  GLY    97      38.001 -13.150 -52.999  1.00 25.00           C
ATOM     98  CA  ILE    98      35.619 -10.782 -51.153  1.00 25.00           C
ATOM     99  CA  VAL    99      37.447  -7.681 -52.272  1.00 25.00           C
ATOM    100  CA  ALA   100      38.612  -5.334 -55.007  1.00 25.00           C
ATOM    101  CA  TYR   101      39.589  -1.754 -55.916  1.00 25.00           C
ATOM    102  CA  LEU   102      42.176   0.703 -57.324  1.00 25.00           C
ATOM    103  CA  GLY   103      45.278  -1.451 -56.691  1.00 25.00           C
ATOM    104  CA  THR   104      48.461  -0.454 -58.527  1.00 25.00           C
ATOM    105  CA  ALA   105      48.943   2.476 -60.930  1.00 25.00           C
ATOM    106  CA  ASN   106      45.509   0.807 -61.230  1.00 25.00           C
ATOM    107  CA  SER   107      44.718   2.935 -64.315  1.00 25.00           C
ATOM    108  CA  ALA   108      48.073   1.956 -65.881  1.00 25.00           C
ATOM    109  CA  ASN   109      47.346  -1.739 -65.190  1.00 25.00           C
ATOM    110  CA  TYR   110      43.890  -1.386 -66.802  1.00 25.00           C
ATOM    111  CA  LEU   111      45.464   0.279 -69.870  1.00 25.00           C
ATOM    112  CA  VAL   112      48.020  -2.561 -70.130  1.00 25.00           C
ATOM    113  CA  SER   113      45.205  -5.148 -69.909  1.00 25.00           C
ATOM    114  CA  ASP   114      45.488  -8.884 -68.975  1.00 25.00           C
ATOM    115  CA  GLY   115      49.048  -8.072 -67.853  1.00 25.00           C
ATOM    116  CA  ILE   116      47.749  -9.348 -64.493  1.00 25.00           C
ATOM    117  CA  LYS   117      47.516  -6.232 -62.325  1.00 25.00           C
ATOM    118  CA  MET   118      45.718  -6.371 -58.976  1.00 25.00           C
ATOM    119  CA  LEU   119      43.393  -6.622 -56.015  1.00 25.00           C
ATOM    120  CA  PRO   120      45.484  -5.186 -53.240  1.00 25.00           C
ATOM    121  CA  VAL   121      45.605  -8.026 -50.642  1.00 25.00           C
ATOM    122  CA  SER   122      48.598 -10.224 -51.245  1.00 25.00           C
ATOM    123  CA  ALA   123      52.164 -11.526 -51.399  1.00 25.00           C
ATOM    124  CA  ILE   124      53.115  -8.132 -49.929  1.00 25.00           C
ATOM    125  CA  ASP   125      56.593  -9.232 -50.730  1.00 25.00           C
ATOM    126  CA  ASP   126      59.131 -10.674 -53.131  1.00 25.00           C
ATOM    127  CA  SER   127      59.890  -9.591 -56.674  1.00 25.00           C
ATOM    128  CA  ASN   128      60.128  -5.763 -56.745  1.00 25.00           C
ATOM    129  CA  ILE   129      56.856  -3.898 -57.195  1.00 25.00           C
ATOM    130  CA  GLY   130      55.357  -5.512 -54.095  1.00 25.00           C
ATOM    131  CA  GLU   131      51.951  -5.107 -55.611  1.00 25.00           C
ATOM    132  CA  VAL   132      50.599  -1.989 -54.012  1.00 25.00           C
ATOM    133  CA  ASN   133      49.364   1.581 -54.438  1.00 25.00           C
ATOM    134  CA  ALA   134      47.180   4.439 -53.208  1.00 25.00           C
ATOM    135  CA  LEU   135      44.649   1.621 -52.759  1.00 25.00           C
ATOM    136  CA  VAL   136      42.504  -1.377 -52.083  1.00 25.00           C
ATOM    137  CA  LEU   137      39.173  -2.619 -50.757  1.00 25.00           C
ATOM    138  CA  LEU   138      36.613  -3.917 -48.204  1.00 25.00           C
ATOM    139  CA  ASP   139      35.140  -2.401 -44.989  1.00 25.00           C
ATOM    140  CA  ASP   140      36.816  -5.362 -43.288  1.00 25.00           C
ATOM    141  CA  GLU   141      38.524  -8.587 -44.350  1.00 25.00           C
ATOM    142  CA  GLY   142      38.567  -9.687 -40.739  1.00 25.00           C
ATOM    143  CA  PHE   143      37.726  -6.798 -38.427  1.00 25.00           C
ATOM    144  CA  ASN   144      40.863  -6.211 -36.361  1.00 25.00           C
ATOM    145  CA  TRP   145      42.918  -7.509 -39.269  1.00 25.00           C
ATOM    146  CA  PHE   146      41.547  -4.653 -41.422  1.00 25.00           C
ATOM    147  CA  HIS   147      43.826  -2.163 -39.614  1.00 25.00           C
ATOM    148  CA  ASP   148      46.836  -4.457 -40.199  1.00 25.00           C
ATOM    149  CA  LEU   149      45.943  -4.724 -43.914  1.00 25.00           C
ATOM    150  CA  ASN   150      45.673  -0.910 -44.148  1.00 25.00           C
ATOM    151  CA  LYS   151      49.092  -0.541 -42.462  1.00 25.00           C
ATOM    152  CA  THR   152      50.605  -3.055 -44.922  1.00 25.00           C
ATOM    153  CA  VAL   153      49.092  -1.124 -47.863  1.00 25.00           C
ATOM    154  CA  ASN   154      50.536   2.146 -46.491  1.00 25.00           C
ATOM    155  CA  LEU   155      53.978   0.506 -46.136  1.00 25.00           C
ATOM    156  CA  LEU   156      53.770  -0.768 -49.742  1.00 25.00           C
ATOM    157  CA  ARG   157      52.831   2.742 -50.954  1.00 25.00           C
ATOM    158  CA  LYS   158      55.797   4.224 -49.038  1.00 25.00           C
ATOM    159  CA  ARG   159      57.325   7.054 -51.049  1.00 25.00           C
ATOM    160  CA  THR   160      53.918   7.808 -52.669  1.00 25.00           C
ATOM    161  CA  ILE   161      51.418   6.346 -55.134  1.00 25.00           C
ATOM    162  CA  PRO   162      49.131   6.966 -58.123  1.00 25.00           C
ATOM    163  CA  ALA   163      45.440   6.590 -57.381  1.00 25.00           C
ATOM    164  CA  ILE   164      42.672   5.928 -54.817  1.00 25.00           C
ATOM    165  CA  VAL   165      39.479   3.906 -54.382  1.00 25.00           C
ATOM    166  CA  ALA   166      36.968   1.429 -52.982  1.00 25.00           C
ATOM    167  CA  ASN   167      36.157   4.708 -51.375  1.00 25.00           C
ATOM    168  CA  THR   168      37.007   6.929 -48.423  1.00 25.00           C
ATOM    169  CA  ASP   169      35.656   7.239 -44.920  1.00 25.00           C
ATOM    170  CA  ASN   170      35.669   5.949 -41.277  1.00 25.00           C
ATOM    171  CA  THR   171      32.197   4.648 -40.581  1.00 25.00           C
ATOM    172  CA  TYR   172      29.807   1.859 -41.324  1.00 25.00           C
ATOM    173  CA  PRO   173      28.155  -1.501 -42.215  1.00 25.00           C
ATOM    174  CA  LEU   174      29.695  -3.639 -39.452  1.00 25.00           C
ATOM    175  CA  THR   175      26.322  -4.451 -37.794  1.00 25.00           C
ATOM    176  CA  LYS   176      26.737  -2.843 -34.420  1.00 25.00           C
ATOM    177  CA  THR   177      30.113  -4.018 -33.262  1.00 25.00           C
ATOM    178  CA  ASP   178      33.080  -1.902 -34.488  1.00 25.00           C
ATOM    179  CA  VAL   179      33.521   0.029 -37.745  1.00 25.00           C
ATOM    180  CA  ALA   180      34.970   0.859 -41.164  1.00 25.00           C
ATOM    181  CA  ILE   181      33.612   2.343 -44.373  1.00 25.00           C
ATOM    182  CA  ALA   182      33.969   3.272 -48.051  1.00 25.00           C
ATOM    183  CA  ILE   183      37.014   1.916 -46.309  1.00 25.00           C
ATOM    184  CA  GLY   184      40.156  -0.155 -47.023  1.00 25.00           C
ATOM    185  CA  GLY   185      41.025   2.134 -49.968  1.00 25.00           C
ATOM    186  CA  VAL   186      40.564   5.216 -47.740  1.00 25.00           C
ATOM    187  CA  ALA   187      42.837   3.662 -45.078  1.00 25.00           C
ATOM    188  CA  THR   188      45.491   2.926 -47.740  1.00 25.00           C
ATOM    189  CA  MET   189      45.279   6.540 -48.986  1.00 25.00           C
ATOM    190  CA  ILE   190      45.681   7.827 -45.401  1.00 25.00           C
ATOM    191  CA  GLU   191      48.736   5.571 -44.909  1.00 25.00           C
ATOM    192  CA  SER   192      50.255   6.874 -48.174  1.00 25.00           C
ATOM    193  CA  ILE   193      49.656  10.483 -47.042  1.00 25.00           C
ATOM    194  CA  LEU   194      51.327   9.732 -43.679  1.00 25.00           C
ATOM    195  CA  GLY   195      50.630  10.131 -40.019  1.00 25.00           C
ATOM    196  CA  ARG   196      47.216   8.710 -40.880  1.00 25.00           C
ATOM    197  CA  ARG   197      45.959   5.109 -40.379  1.00 25.00           C
ATOM    198  CA  PHE   198      42.631   6.457 -41.584  1.00 25.00           C
ATOM    199  CA  ILE   199      42.203  10.109 -42.595  1.00 25.00           C
ATOM    200  CA  ARG   200      39.953   9.721 -45.634  1.00 25.00           C
ATOM    201  CA  PHE   201      40.058  11.028 -49.205  1.00 25.00           C
ATOM    202  CA  GLY   202      36.931  10.225 -51.114  1.00 25.00           C
TER
END
