
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  121 (  121),  selected  121 , name T0371TS168_5-D2
# Molecule2: number of CA atoms  121 (  915),  selected  121 , name T0371_D2.pdb
# PARAMETERS: T0371TS168_5-D2.T0371_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   121        82 - 202         4.85     4.85
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       139 - 158         2.00     6.22
  LCS_AVERAGE:      9.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       144 - 158         0.73     9.41
  LCS_AVERAGE:      6.06

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     S      82     S      82     11   12  121    11   11   11   11   20   27   37   45   60   74   88   95  102  108  112  116  118  119  121  121 
LCS_GDT     G      83     G      83     11   12  121    11   11   11   20   37   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     M      84     M      84     11   12  121    11   11   11   11   11   13   20   25   43   54   71   88  100  105  112  116  118  119  121  121 
LCS_GDT     I      85     I      85     11   12  121    11   11   11   11   18   29   37   50   61   77   87   95  102  108  112  116  118  119  121  121 
LCS_GDT     T      86     T      86     11   12  121    11   11   11   24   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     K      87     K      87     11   12  121    11   11   11   17   27   42   60   68   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     E      88     E      88     11   12  121    11   11   11   12   22   35   49   63   77   87   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     Y      89     Y      89     11   12  121    11   11   11   19   35   47   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I      90     I      90     11   12  121    11   11   11   11   11   16   40   56   77   82   95   99  103  108  112  116  118  119  121  121 
LCS_GDT     D      91     D      91     11   12  121    11   11   11   17   24   38   60   67   77   90   96   99  103  108  112  115  118  118  121  121 
LCS_GDT     L      92     L      92     11   12  121    11   11   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     K      93     K      93      5   12  121     3    4   11   24   38   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V      94     V      94      5    6  121     3    4    5    8   21   39   56   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D      95     D      95      5    6  121     3    4    6   15   26   46   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G      96     G      96      5   10  121     5    8   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G      97     G      97      6   10  121     4    6    9   18   29   42   60   68   79   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I      98     I      98      6   10  121     3    6    9   12   21   35   50   61   73   83   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V      99     V      99      6   10  121     4    6    9   15   27   45   56   68   78   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     100     A     100      6   10  121     4    6    9   12   16   28   40   57   70   79   91   99  103  107  112  116  118  119  121  121 
LCS_GDT     Y     101     Y     101      6   10  121     4    6    9   15   27   46   60   67   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     102     L     102      6   10  121     3    6    8   15   30   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     103     G     103      3   10  121     3    6   13   22   40   50   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     104     T     104      6   10  121     3    5    9   11   22   36   48   68   77   86   93   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     105     A     105      8   10  121     5    7    9   14   22   28   36   48   68   80   88   96  102  108  112  116  118  119  121  121 
LCS_GDT     N     106     N     106      8   10  121     5    7    9    9   15   29   36   54   71   80   89   96  102  108  112  116  118  119  121  121 
LCS_GDT     S     107     S     107      8   10  121     5    5    9    9    9   26   36   45   60   72   84   94  102  108  112  116  118  119  121  121 
LCS_GDT     A     108     A     108      8   10  121     5    7    9    9   19   27   36   45   54   64   76   93   98  105  111  116  118  119  121  121 
LCS_GDT     N     109     N     109      8   10  121     5    7    9   16   21   27   36   43   53   64   76   93   99  105  111  116  118  119  121  121 
LCS_GDT     Y     110     Y     110      8   10  121     5    7    9   14   20   27   36   42   53   62   76   86   94  103  108  115  118  119  121  121 
LCS_GDT     L     111     L     111      8   10  121     5    7    9    9   17   25   29   42   48   54   67   76   88   98  103  112  116  119  121  121 
LCS_GDT     V     112     V     112      8   10  121     5    7    9    9   11   21   29   42   48   56   64   74   86   98  107  112  116  119  121  121 
LCS_GDT     S     113     S     113      4   10  121     3    4    6    8   11   18   26   32   44   56   64   73   84  100  107  112  116  119  121  121 
LCS_GDT     D     114     D     114      4    9  121     3    4    5    8   11   16   23   30   46   67   78   92  101  105  111  116  118  119  121  121 
LCS_GDT     G     115     G     115      4    9  121     3    4    6    8   27   35   40   49   62   75   84   91   98  105  111  116  118  119  121  121 
LCS_GDT     I     116     I     116      4    9  121     3    4    6    8   27   36   44   61   71   81   88   96  103  108  112  116  118  119  121  121 
LCS_GDT     K     117     K     117      4    9  121     2    4   10   24   39   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     M     118     M     118      4    9  121     3    6   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     119     L     119      4    9  121     3    5    8   11   18   28   54   68   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     P     120     P     120      4    9  121     3    4    5    8   14   20   44   63   77   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     121     V     121      3    7  121     2    8   14   26   39   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     S     122     S     122      3    5  121     3    3    3    9   15   28   48   65   78   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     123     A     123      3    7  121     3    3    5   10   23   42   55   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     124     I     124      3    7  121     3    3   12   20   34   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     125     D     125      4    7  121     3    5   11   18   34   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     126     D     126      4    7  121     3    4    9   21   36   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     S     127     S     127      4    7  121     3    8   12   21   39   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     128     N     128      4    7  121     3    4    5   12   23   42   56   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     129     I     129      3    8  121     3    8   12   22   39   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     130     G     130      3    8  121     3    4    9   21   35   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     E     131     E     131      4    8  121     3    4   13   22   35   50   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     132     V     132      4    8  121     3    4   13   22   35   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     133     N     133      4    8  121     3    5    7   22   37   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     134     A     134      4    8  121     3    4   10   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     135     L     135      5    8  121     5    8   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     136     V     136      5    8  121     3    4    6   16   32   50   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     137     L     137      5    8  121     3    5   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     138     L     138      5    8  121     3    4    9   16   23   38   52   68   78   88   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     139     D     139      5   20  121     3    4   12   22   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     140     D     140      3   20  121     2    6   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     E     141     E     141      3   20  121     4    6   13   22   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     142     G     142      3   20  121     3    3    4   10   17   21   28   39   66   78   86   94  102  107  112  116  118  119  121  121 
LCS_GDT     F     143     F     143      3   20  121     3    4   11   20   28   41   54   67   78   88   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     144     N     144     15   20  121     3    5   14   24   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     W     145     W     145     15   20  121     3   12   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     F     146     F     146     15   20  121     3   13   14   18   40   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     H     147     H     147     15   20  121     3   13   14   20   40   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     148     D     148     15   20  121    11   13   14   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     149     L     149     15   20  121    11   13   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     150     N     150     15   20  121    11   13   14   23   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     K     151     K     151     15   20  121    11   13   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     152     T     152     15   20  121    11   13   14   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     153     V     153     15   20  121    11   13   14   20   30   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     154     N     154     15   20  121    11   13   14   23   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     155     L     155     15   20  121    11   13   14   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     156     L     156     15   20  121    11   13   14   20   30   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     R     157     R     157     15   20  121    11   13   14   20   29   44   58   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     K     158     K     158     15   20  121    11   13   14   22   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     R     159     R     159      4   17  121     3    4    9   16   31   45   56   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     160     T     160      4   17  121     3    7   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     161     I     161      4    8  121     3    7   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     P     162     P     162      5    8  121     3    5    7   21   36   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     163     A     163      5    8  121     3    4   10   21   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     164     I     164      5    8  121     3    8   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     165     V     165      5    8  121     3    6   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     166     A     166      5    8  121     3    4    6   10   16   31   45   65   76   88   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     167     N     167      4    8  121     4    4    7    8   14   21   38   55   68   84   89   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     168     T     168      4    8  121     4    8   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     169     D     169      4    8  121     4    5   11   26   39   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     N     170     N     170      4    8  121     4    6   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     171     T     171      4    6  121     3    6   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     Y     172     Y     172      4    6  121     3    4    6   10   24   46   59   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     P     173     P     173      4    6  121     3    4    4    6   16   42   58   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     174     L     174      4    7  121     3    4    9   15   25   43   57   66   77   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     175     T     175      4    7  121     3    4    4    5   15   40   56   66   78   90   96   99  102  108  112  116  118  119  121  121 
LCS_GDT     K     176     K     176      3    7  121     3    3    4    5   18   27   53   67   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     177     T     177      4    7  121     3    3    4    5    9   28   45   68   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     D     178     D     178      4    7  121     3    5   12   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     179     V     179      4    7  121     3    5   12   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     180     A     180      4    7  121     3    4    9   17   29   45   58   69   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     181     I     181      3   15  121     5    8   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     182     A     182     13   15  121     4    8   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     183     I     183     13   15  121    10   12   13   24   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     184     G     184     13   15  121    10   12   12   18   30   44   60   69   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     185     G     185     13   15  121    10   12   12   21   31   45   60   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     V     186     V     186     13   15  121    10   12   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     A     187     A     187     13   15  121    10   12   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     T     188     T     188     13   15  121    10   12   12   21   36   50   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     M     189     M     189     13   15  121    10   12   12   18   33   48   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     190     I     190     13   15  121    10   12   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     E     191     E     191     13   15  121    10   12   15   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     S     192     S     192     13   15  121    10   12   12   18   33   46   61   69   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     193     I     193     13   15  121     5   12   12   12   21   45   56   68   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     L     194     L     194     13   15  121     9   12   13   26   40   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     G     195     G     195      4   15  121     3    3    6   14   22   35   48   61   77   87   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     R     196     R     196      4    7  121     3    3    5    8   14   19   32   49   65   79   88   94  100  106  112  116  118  118  121  121 
LCS_GDT     R     197     R     197      4    7  121     3    4   11   26   38   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     F     198     F     198      4    7  121     1    4    9   17   35   51   61   70   80   90   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     I     199     I     199      4    7  121     3    3    6    9   17   29   43   56   75   88   96   99  103  108  112  116  118  119  121  121 
LCS_GDT     R     200     R     200      3    7  121     3    3    6    6   10   17   28   34   52   68   89   98  103  108  112  116  118  119  121  121 
LCS_GDT     F     201     F     201      3    7  121     3    3    6   10   12   19   36   40   56   71   80   94  102  107  112  116  118  119  121  121 
LCS_GDT     G     202     G     202      3    6  121     3    3    4    6   10   17   26   46   64   77   92   99  103  108  112  116  118  119  121  121 
LCS_AVERAGE  LCS_A:  38.51  (   6.06    9.47  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     26     40     51     61     70     80     90     96     99    103    108    112    116    118    119    121    121 
GDT PERCENT_CA   9.09  10.74  12.40  21.49  33.06  42.15  50.41  57.85  66.12  74.38  79.34  81.82  85.12  89.26  92.56  95.87  97.52  98.35 100.00 100.00
GDT RMS_LOCAL    0.22   0.49   1.20   1.54   1.98   2.19   2.42   2.68   2.94   3.22   3.42   3.52   3.74   4.01   4.18   4.48   4.58   4.78   4.85   4.85
GDT RMS_ALL_CA  29.42   9.63   5.21   5.13   5.04   5.09   5.13   5.09   5.14   5.24   5.22   5.19   5.12   4.98   4.98   4.87   4.87   4.85   4.85   4.85

#      Molecule1      Molecule2       DISTANCE
LGA    S      82      S      82          7.472
LGA    G      83      G      83          2.821
LGA    M      84      M      84          8.325
LGA    I      85      I      85          7.299
LGA    T      86      T      86          2.473
LGA    K      87      K      87          4.900
LGA    E      88      E      88          5.273
LGA    Y      89      Y      89          3.712
LGA    I      90      I      90          6.039
LGA    D      91      D      91          6.129
LGA    L      92      L      92          1.053
LGA    K      93      K      93          2.244
LGA    V      94      V      94          3.953
LGA    D      95      D      95          3.378
LGA    G      96      G      96          1.381
LGA    G      97      G      97          5.551
LGA    I      98      I      98          6.281
LGA    V      99      V      99          5.117
LGA    A     100      A     100          6.591
LGA    Y     101      Y     101          4.550
LGA    L     102      L     102          3.700
LGA    G     103      G     103          3.493
LGA    T     104      T     104          6.336
LGA    A     105      A     105          8.288
LGA    N     106      N     106          7.407
LGA    S     107      S     107          8.140
LGA    A     108      A     108          9.859
LGA    N     109      N     109         10.556
LGA    Y     110      Y     110         10.835
LGA    L     111      L     111         11.989
LGA    V     112      V     112         12.892
LGA    S     113      S     113         12.966
LGA    D     114      D     114         10.694
LGA    G     115      G     115          9.763
LGA    I     116      I     116          7.550
LGA    K     117      K     117          2.946
LGA    M     118      M     118          1.493
LGA    L     119      L     119          4.596
LGA    P     120      P     120          5.353
LGA    V     121      V     121          1.689
LGA    S     122      S     122          5.386
LGA    A     123      A     123          4.546
LGA    I     124      I     124          3.516
LGA    D     125      D     125          3.094
LGA    D     126      D     126          3.285
LGA    S     127      S     127          3.082
LGA    N     128      N     128          4.321
LGA    I     129      I     129          2.669
LGA    G     130      G     130          3.909
LGA    E     131      E     131          3.781
LGA    V     132      V     132          3.874
LGA    N     133      N     133          2.947
LGA    A     134      A     134          2.476
LGA    L     135      L     135          1.240
LGA    V     136      V     136          3.611
LGA    L     137      L     137          1.833
LGA    L     138      L     138          5.428
LGA    D     139      D     139          3.034
LGA    D     140      D     140          1.980
LGA    E     141      E     141          3.504
LGA    G     142      G     142          8.352
LGA    F     143      F     143          4.998
LGA    N     144      N     144          2.541
LGA    W     145      W     145          1.913
LGA    F     146      F     146          3.318
LGA    H     147      H     147          3.856
LGA    D     148      D     148          1.915
LGA    L     149      L     149          1.382
LGA    N     150      N     150          2.379
LGA    K     151      K     151          1.178
LGA    T     152      T     152          1.934
LGA    V     153      V     153          3.229
LGA    N     154      N     154          2.382
LGA    L     155      L     155          1.446
LGA    L     156      L     156          3.549
LGA    R     157      R     157          4.115
LGA    K     158      K     158          2.727
LGA    R     159      R     159          3.960
LGA    T     160      T     160          1.960
LGA    I     161      I     161          2.185
LGA    P     162      P     162          3.031
LGA    A     163      A     163          2.565
LGA    I     164      I     164          1.093
LGA    V     165      V     165          1.788
LGA    A     166      A     166          5.768
LGA    N     167      N     167          6.762
LGA    T     168      T     168          1.658
LGA    D     169      D     169          2.277
LGA    N     170      N     170          1.935
LGA    T     171      T     171          1.605
LGA    Y     172      Y     172          3.422
LGA    P     173      P     173          3.779
LGA    L     174      L     174          5.366
LGA    T     175      T     175          4.728
LGA    K     176      K     176          4.628
LGA    T     177      T     177          4.660
LGA    D     178      D     178          2.611
LGA    V     179      V     179          2.149
LGA    A     180      A     180          4.450
LGA    I     181      I     181          1.460
LGA    A     182      A     182          1.616
LGA    I     183      I     183          2.369
LGA    G     184      G     184          5.028
LGA    G     185      G     185          4.404
LGA    V     186      V     186          1.161
LGA    A     187      A     187          1.966
LGA    T     188      T     188          3.810
LGA    M     189      M     189          3.732
LGA    I     190      I     190          1.921
LGA    E     191      E     191          1.364
LGA    S     192      S     192          4.415
LGA    I     193      I     193          4.655
LGA    L     194      L     194          1.454
LGA    G     195      G     195          6.626
LGA    R     196      R     196          8.268
LGA    R     197      R     197          2.770
LGA    F     198      F     198          3.086
LGA    I     199      I     199          5.867
LGA    R     200      R     200          7.465
LGA    F     201      F     201          8.401
LGA    G     202      G     202          7.166

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  121  121    4.0     70    2.68    46.488    40.044     2.520

LGA_LOCAL      RMSD =  2.678  Number of atoms =   70  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.093  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  4.846  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.885003 * X  +   0.365644 * Y  +   0.288225 * Z  +  37.135029
  Y_new =   0.065080 * X  +  -0.515830 * Y  +   0.854216 * Z  +   4.323401
  Z_new =   0.461014 * X  +   0.774741 * Y  +   0.432715 * Z  + -53.419098 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.061429   -2.080163  [ DEG:    60.8154   -119.1846 ]
  Theta =  -0.479138   -2.662455  [ DEG:   -27.4526   -152.5474 ]
  Phi   =   3.068188   -0.073405  [ DEG:   175.7942     -4.2058 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0371TS168_5-D2                               
REMARK     2: T0371_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0371TS168_5-D2.T0371_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  121  121   4.0   70   2.68  40.044     4.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0371TS168_5-D2
PFRMAT TS
TARGET T0371
MODEL 5
PARENT N/A
ATOM     82  CA  SER    82      37.275  -0.983 -57.011  1.00 25.00           C
ATOM     83  CA  GLY    83      36.712   2.785 -57.396  1.00 25.00           C
ATOM     84  CA  MET    84      40.488   3.394 -57.196  1.00 25.00           C
ATOM     85  CA  ILE    85      41.085   0.712 -59.863  1.00 25.00           C
ATOM     86  CA  THR    86      38.449   2.332 -62.119  1.00 25.00           C
ATOM     87  CA  LYS    87      40.113   5.749 -61.652  1.00 25.00           C
ATOM     88  CA  GLU    88      43.518   4.240 -62.542  1.00 25.00           C
ATOM     89  CA  TYR    89      42.018   2.644 -65.684  1.00 25.00           C
ATOM     90  CA  ILE    90      40.480   6.005 -66.686  1.00 25.00           C
ATOM     91  CA  ASP    91      43.861   7.732 -66.179  1.00 25.00           C
ATOM     92  CA  LEU    92      45.572   5.069 -68.336  1.00 25.00           C
ATOM     93  CA  LYS    93      48.800   6.347 -66.887  1.00 25.00           C
ATOM     94  CA  VAL    94      50.973   3.315 -67.555  1.00 25.00           C
ATOM     95  CA  ASP    95      50.698   0.459 -70.003  1.00 25.00           C
ATOM     96  CA  GLY    96      50.338  -2.139 -67.194  1.00 25.00           C
ATOM     97  CA  GLY    97      48.239  -1.526 -64.040  1.00 25.00           C
ATOM     98  CA  ILE    98      45.718  -2.012 -61.234  1.00 25.00           C
ATOM     99  CA  VAL    99      42.912  -3.425 -59.038  1.00 25.00           C
ATOM    100  CA  ALA   100      42.222  -1.534 -55.802  1.00 25.00           C
ATOM    101  CA  TYR   101      40.280  -3.979 -53.681  1.00 25.00           C
ATOM    102  CA  LEU   102      39.614  -5.498 -50.202  1.00 25.00           C
ATOM    103  CA  GLY   103      37.508  -7.007 -47.425  1.00 25.00           C
ATOM    104  CA  THR   104      40.760  -7.884 -45.650  1.00 25.00           C
ATOM    105  CA  ALA   105      42.795 -10.865 -47.004  1.00 25.00           C
ATOM    106  CA  ASN   106      40.708 -10.246 -50.156  1.00 25.00           C
ATOM    107  CA  SER   107      43.582  -8.232 -51.692  1.00 25.00           C
ATOM    108  CA  ALA   108      46.031 -11.062 -50.880  1.00 25.00           C
ATOM    109  CA  ASN   109      43.668 -13.605 -52.500  1.00 25.00           C
ATOM    110  CA  TYR   110      43.400 -11.404 -55.623  1.00 25.00           C
ATOM    111  CA  LEU   111      47.217 -11.137 -55.793  1.00 25.00           C
ATOM    112  CA  VAL   112      47.521 -14.943 -55.485  1.00 25.00           C
ATOM    113  CA  SER   113      44.960 -15.399 -58.296  1.00 25.00           C
ATOM    114  CA  ASP   114      45.532 -13.593 -61.602  1.00 25.00           C
ATOM    115  CA  GLY   115      42.946 -12.013 -63.874  1.00 25.00           C
ATOM    116  CA  ILE   116      42.646  -9.380 -61.165  1.00 25.00           C
ATOM    117  CA  LYS   117      45.361  -6.982 -62.284  1.00 25.00           C
ATOM    118  CA  MET   118      46.353  -6.714 -58.645  1.00 25.00           C
ATOM    119  CA  LEU   119      45.811  -5.095 -55.236  1.00 25.00           C
ATOM    120  CA  PRO   120      47.180  -3.618 -52.040  1.00 25.00           C
ATOM    121  CA  VAL   121      49.373  -6.785 -51.975  1.00 25.00           C
ATOM    122  CA  SER   122      52.412  -8.823 -52.965  1.00 25.00           C
ATOM    123  CA  ALA   123      55.695 -10.685 -52.249  1.00 25.00           C
ATOM    124  CA  ILE   124      56.556  -7.342 -50.558  1.00 25.00           C
ATOM    125  CA  ASP   125      59.860  -7.952 -52.273  1.00 25.00           C
ATOM    126  CA  ASP   126      62.483  -9.984 -54.189  1.00 25.00           C
ATOM    127  CA  SER   127      61.466 -10.175 -57.815  1.00 25.00           C
ATOM    128  CA  ASN   128      61.274  -6.393 -57.847  1.00 25.00           C
ATOM    129  CA  ILE   129      57.726  -5.019 -57.513  1.00 25.00           C
ATOM    130  CA  GLY   130      56.043  -1.874 -58.923  1.00 25.00           C
ATOM    131  CA  GLU   131      52.801  -3.671 -59.887  1.00 25.00           C
ATOM    132  CA  VAL   132      49.890  -2.437 -57.764  1.00 25.00           C
ATOM    133  CA  ASN   133      50.917   1.205 -57.247  1.00 25.00           C
ATOM    134  CA  ALA   134      47.283   2.273 -57.989  1.00 25.00           C
ATOM    135  CA  LEU   135      46.377   0.213 -54.903  1.00 25.00           C
ATOM    136  CA  VAL   136      45.512   1.072 -51.279  1.00 25.00           C
ATOM    137  CA  LEU   137      42.893  -1.561 -50.459  1.00 25.00           C
ATOM    138  CA  LEU   138      41.093  -2.467 -47.233  1.00 25.00           C
ATOM    139  CA  ASP   139      37.409  -2.410 -46.420  1.00 25.00           C
ATOM    140  CA  ASP   140      38.007  -4.237 -43.188  1.00 25.00           C
ATOM    141  CA  GLU   141      36.667  -7.552 -41.756  1.00 25.00           C
ATOM    142  CA  GLY   142      39.353  -7.330 -39.132  1.00 25.00           C
ATOM    143  CA  PHE   143      40.677 -10.534 -40.686  1.00 25.00           C
ATOM    144  CA  ASN   144      44.277 -11.285 -39.654  1.00 25.00           C
ATOM    145  CA  TRP   145      44.582  -7.617 -39.011  1.00 25.00           C
ATOM    146  CA  PHE   146      46.018  -4.225 -37.964  1.00 25.00           C
ATOM    147  CA  HIS   147      49.555  -5.440 -38.792  1.00 25.00           C
ATOM    148  CA  ASP   148      48.361  -6.652 -42.223  1.00 25.00           C
ATOM    149  CA  LEU   149      46.712  -3.258 -42.876  1.00 25.00           C
ATOM    150  CA  ASN   150      49.950  -1.467 -41.890  1.00 25.00           C
ATOM    151  CA  LYS   151      51.947  -3.725 -44.252  1.00 25.00           C
ATOM    152  CA  THR   152      49.487  -2.973 -47.089  1.00 25.00           C
ATOM    153  CA  VAL   153      49.815   0.782 -46.413  1.00 25.00           C
ATOM    154  CA  ASN   154      53.633   0.484 -46.483  1.00 25.00           C
ATOM    155  CA  LEU   155      53.450  -1.409 -49.807  1.00 25.00           C
ATOM    156  CA  LEU   156      51.168   1.304 -51.255  1.00 25.00           C
ATOM    157  CA  ARG   157      53.616   4.014 -50.100  1.00 25.00           C
ATOM    158  CA  LYS   158      56.520   2.118 -51.725  1.00 25.00           C
ATOM    159  CA  ARG   159      58.524   5.264 -51.117  1.00 25.00           C
ATOM    160  CA  THR   160      56.298   7.111 -53.553  1.00 25.00           C
ATOM    161  CA  ILE   161      52.762   5.940 -54.462  1.00 25.00           C
ATOM    162  CA  PRO   162      49.211   5.596 -53.175  1.00 25.00           C
ATOM    163  CA  ALA   163      45.979   6.170 -55.098  1.00 25.00           C
ATOM    164  CA  ILE   164      43.222   4.660 -53.054  1.00 25.00           C
ATOM    165  CA  VAL   165      40.524   2.464 -51.641  1.00 25.00           C
ATOM    166  CA  ALA   166      38.478   0.929 -48.828  1.00 25.00           C
ATOM    167  CA  ASN   167      34.754   1.285 -48.154  1.00 25.00           C
ATOM    168  CA  THR   168      32.674   4.301 -47.091  1.00 25.00           C
ATOM    169  CA  ASP   169      34.231   6.505 -44.491  1.00 25.00           C
ATOM    170  CA  ASN   170      33.205   6.349 -40.841  1.00 25.00           C
ATOM    171  CA  THR   171      31.351   3.154 -41.891  1.00 25.00           C
ATOM    172  CA  TYR   172      29.458   1.489 -44.798  1.00 25.00           C
ATOM    173  CA  PRO   173      28.331  -0.958 -42.115  1.00 25.00           C
ATOM    174  CA  LEU   174      26.362   1.450 -39.932  1.00 25.00           C
ATOM    175  CA  THR   175      23.542  -1.047 -39.701  1.00 25.00           C
ATOM    176  CA  LYS   176      25.068  -2.687 -36.638  1.00 25.00           C
ATOM    177  CA  THR   177      27.439  -3.338 -33.737  1.00 25.00           C
ATOM    178  CA  ASP   178      28.377   0.327 -33.511  1.00 25.00           C
ATOM    179  CA  VAL   179      30.580   1.106 -36.499  1.00 25.00           C
ATOM    180  CA  ALA   180      34.089   2.019 -37.788  1.00 25.00           C
ATOM    181  CA  ILE   181      33.867  -0.903 -40.211  1.00 25.00           C
ATOM    182  CA  ALA   182      33.787  -0.977 -44.024  1.00 25.00           C
ATOM    183  CA  ILE   183      36.659   1.480 -44.238  1.00 25.00           C
ATOM    184  CA  GLY   184      37.471   3.736 -41.251  1.00 25.00           C
ATOM    185  CA  GLY   185      40.042   1.189 -39.996  1.00 25.00           C
ATOM    186  CA  VAL   186      41.635   1.046 -43.475  1.00 25.00           C
ATOM    187  CA  ALA   187      41.812   4.870 -43.579  1.00 25.00           C
ATOM    188  CA  THR   188      43.456   4.913 -40.121  1.00 25.00           C
ATOM    189  CA  MET   189      46.009   2.302 -41.275  1.00 25.00           C
ATOM    190  CA  ILE   190      46.777   4.393 -44.390  1.00 25.00           C
ATOM    191  CA  GLU   191      47.256   7.506 -42.211  1.00 25.00           C
ATOM    192  CA  SER   192      49.621   5.561 -39.910  1.00 25.00           C
ATOM    193  CA  ILE   193      51.619   4.353 -42.945  1.00 25.00           C
ATOM    194  CA  LEU   194      51.860   7.945 -44.250  1.00 25.00           C
ATOM    195  CA  GLY   195      55.552   8.837 -44.750  1.00 25.00           C
ATOM    196  CA  ARG   196      54.399   8.876 -48.375  1.00 25.00           C
ATOM    197  CA  ARG   197      50.675   9.221 -49.012  1.00 25.00           C
ATOM    198  CA  PHE   198      47.470   9.926 -50.808  1.00 25.00           C
ATOM    199  CA  ILE   199      45.909   6.782 -49.379  1.00 25.00           C
ATOM    200  CA  ARG   200      43.003   4.835 -47.982  1.00 25.00           C
ATOM    201  CA  PHE   201      39.274   5.847 -48.062  1.00 25.00           C
ATOM    202  CA  GLY   202      36.243   5.320 -50.247  1.00 25.00           C
TER
END
