
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  140 , name T0373TS393_1
# Molecule2: number of CA atoms  140 ( 1047),  selected  140 , name T0373.pdb
# PARAMETERS: T0373TS393_1.T0373.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    60        21 - 80          4.87    22.09
  LONGEST_CONTINUOUS_SEGMENT:    60        22 - 81          4.94    22.61
  LCS_AVERAGE:     35.21

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        51 - 81          1.80    26.76
  LCS_AVERAGE:     18.05

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         3 - 28          0.90    21.76
  LONGEST_CONTINUOUS_SEGMENT:    26         4 - 29          0.93    21.34
  LONGEST_CONTINUOUS_SEGMENT:    26        97 - 122         0.94    14.75
  LCS_AVERAGE:     12.94

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     P       2     P       2      3   29   39     3    3    3    4    5   18   27   31   34   35   37   39   40   44   47   54   61   65   72   77 
LCS_GDT     T       3     T       3     26   29   39     3    3    8   22   27   28   30   31   34   35   37   39   40   44   47   52   56   64   68   73 
LCS_GDT     N       4     N       4     26   29   39    10   23   24   26   27   28   30   31   34   35   37   39   40   44   47   52   58   64   68   73 
LCS_GDT     Q       5     Q       5     26   29   39    11   23   24   26   27   28   30   31   34   35   37   39   40   43   47   52   58   64   69   73 
LCS_GDT     D       6     D       6     26   29   39    10   23   24   26   27   28   30   31   34   35   37   39   40   44   47   54   61   65   72   75 
LCS_GDT     L       7     L       7     26   29   39    10   23   24   26   27   28   30   31   34   35   37   39   40   44   47   54   61   68   73   78 
LCS_GDT     Q       8     Q       8     26   29   39    12   23   24   26   27   28   30   31   34   35   37   39   40   44   47   54   61   68   74   79 
LCS_GDT     L       9     L       9     26   29   39    10   23   24   26   27   28   30   31   34   35   37   39   40   44   47   54   61   68   74   80 
LCS_GDT     A      10     A      10     26   29   39    10   23   24   26   27   28   30   31   34   35   37   39   40   44   47   54   62   69   75   80 
LCS_GDT     A      11     A      11     26   29   39    11   23   24   26   27   28   30   31   34   35   37   39   40   44   48   54   62   69   75   80 
LCS_GDT     H      12     H      12     26   29   39    12   23   24   26   27   28   30   31   34   35   37   39   40   44   48   54   62   69   75   80 
LCS_GDT     L      13     L      13     26   29   39    11   23   24   26   27   28   30   31   34   35   37   39   40   44   48   54   62   69   75   81 
LCS_GDT     R      14     R      14     26   29   39    11   23   24   26   27   28   30   31   34   35   37   39   40   47   53   56   64   71   78   82 
LCS_GDT     S      15     S      15     26   29   39    12   23   24   26   27   28   30   31   34   35   37   39   40   48   53   57   64   71   78   82 
LCS_GDT     Q      16     Q      16     26   29   39    12   23   24   26   27   28   30   31   34   35   37   39   40   45   50   55   64   71   78   82 
LCS_GDT     V      17     V      17     26   29   44    12   23   24   26   27   28   30   31   34   35   37   39   40   47   53   56   65   72   79   82 
LCS_GDT     T      18     T      18     26   29   57    12   23   24   26   27   28   30   31   34   36   45   49   51   52   57   62   67   74   79   82 
LCS_GDT     T      19     T      19     26   29   57    12   23   24   26   27   28   30   31   34   35   38   45   50   52   57   59   67   74   79   82 
LCS_GDT     L      20     L      20     26   29   58    12   23   24   26   27   28   30   31   34   35   37   41   48   52   57   62   67   74   79   82 
LCS_GDT     T      21     T      21     26   29   60    12   23   24   26   27   28   30   31   38   44   45   49   51   53   58   62   67   74   79   82 
LCS_GDT     R      22     R      22     26   29   60    12   23   24   26   27   28   30   36   40   44   45   49   52   53   58   62   67   74   79   82 
LCS_GDT     R      23     R      23     26   29   60    12   23   24   26   27   28   30   34   38   44   45   49   51   53   57   59   67   74   79   82 
LCS_GDT     L      24     L      24     26   29   60    12   23   24   26   27   28   30   31   34   43   45   49   51   53   58   62   67   74   79   82 
LCS_GDT     R      25     R      25     26   29   60    12   23   24   26   27   28   30   38   41   46   50   51   52   54   58   59   66   71   79   82 
LCS_GDT     R      26     R      26     26   29   60    12   23   24   26   27   28   30   38   41   46   50   51   52   54   58   59   62   70   77   82 
LCS_GDT     E      27     E      27     26   29   60    12   23   24   26   27   28   30   32   40   44   45   49   51   54   58   59   66   71   79   82 
LCS_GDT     A      28     A      28     26   29   60     3    4    7   26   27   28   30   31   34   35   41   49   51   54   58   59   61   68   75   80 
LCS_GDT     Q      29     Q      29     26   29   60     3    6   19   26   27   28   31   33   36   42   47   49   51   54   58   59   62   69   75   80 
LCS_GDT     A      30     A      30      5   29   60     3    4    7   20   27   28   31   33   36   41   47   49   51   54   58   59   63   71   79   82 
LCS_GDT     D      31     D      31      5   29   60     3    4    9   17   26   31   33   40   45   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     P      32     P      32      5   16   60     3    4   13   31   32   33   35   39   43   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     V      33     V      33      3   16   60     3    5    9   16   23   32   36   41   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     Q      34     Q      34     14   16   60     4    9   14   19   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     F      35     F      35     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     S      36     S      36     14   16   60    11   13   20   26   32   33   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     Q      37     Q      37     14   16   60    11   13   24   26   30   33   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     L      38     L      38     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     V      39     V      39     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     V      40     V      40     14   16   60    11   15   26   31   32   33   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     L      41     L      41     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     G      42     G      42     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     A      43     A      43     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     I      44     I      44     14   16   60    11   13   24   31   32   33   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     D      45     D      45     14   16   60    11   13   24   26   29   32   38   42   46   48   50   51   52   54   58   61   67   74   76   81 
LCS_GDT     R      46     R      46     14   16   60    11   13   24   26   29   32   36   42   46   48   50   51   52   53   58   62   67   74   79   82 
LCS_GDT     L      47     L      47     14   16   60     1    8   16   21   29   32   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     G      48     G      48      3   16   60     1    3    4    4    6   21   27   31   36   38   42   47   49   51   54   61   67   74   79   81 
LCS_GDT     G      49     G      49      3    5   60     1    3    4    4    5    8   12   22   26   36   41   43   47   52   56   62   67   74   79   81 
LCS_GDT     D      50     D      50      3   24   60     1    8   20   31   32   33   35   41   46   48   50   51   52   54   58   62   67   74   79   81 
LCS_GDT     V      51     V      51      3   31   60     3    6    7    9   32   33   38   42   46   48   50   51   52   54   58   62   67   74   79   81 
LCS_GDT     T      52     T      52     11   31   60     3    3   10   21   27   31   38   42   46   48   50   51   52   54   58   61   67   74   79   82 
LCS_GDT     P      53     P      53     11   31   60     8   10   11   19   28   31   36   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     S      54     S      54     11   31   60     8   16   21   26   28   31   38   42   46   48   50   51   52   54   58   59   67   74   79   82 
LCS_GDT     E      55     E      55     11   31   60     8   10   20   26   28   31   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     L      56     L      56     11   31   60     8   10   21   26   28   31   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     A      57     A      57     11   31   60     8   16   21   26   28   31   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     A      58     A      58     11   31   60     8   12   21   26   28   31   38   42   46   48   50   51   52   54   58   59   65   72   79   82 
LCS_GDT     A      59     A      59     11   31   60     8   16   21   26   28   31   36   42   46   48   50   51   52   54   58   59   65   74   79   82 
LCS_GDT     E      60     E      60     11   31   60     8   13   20   26   28   31   38   42   46   48   50   51   52   54   58   62   67   74   79   82 
LCS_GDT     R      61     R      61     11   31   60     8   10   13   17   26   31   34   41   46   48   50   51   52   54   58   59   62   69   75   81 
LCS_GDT     M      62     M      62     19   31   60     3   10   19   26   28   31   38   42   46   48   50   51   52   54   58   59   62   71   76   82 
LCS_GDT     R      63     R      63     19   31   60     3   13   18   26   29   32   38   42   46   48   50   51   52   54   58   59   62   69   75   81 
LCS_GDT     S      64     S      64     19   31   60    11   15   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   68   75   80 
LCS_GDT     S      65     S      65     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   63   67   71 
LCS_GDT     N      66     N      66     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   68   74   80 
LCS_GDT     L      67     L      67     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   64   72   79   82 
LCS_GDT     A      68     A      68     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   63   68   71 
LCS_GDT     A      69     A      69     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   63   68   71 
LCS_GDT     L      70     L      70     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   64   69   76   82 
LCS_GDT     L      71     L      71     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   65   73   75 
LCS_GDT     R      72     R      72     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   65   69 
LCS_GDT     E      73     E      73     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   66   70 
LCS_GDT     L      74     L      74     19   31   60    11   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   65   69 
LCS_GDT     E      75     E      75     19   31   60     9   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   64   67 
LCS_GDT     R      76     R      76     19   31   60     7   15   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   64   67 
LCS_GDT     G      77     G      77     19   31   60     8   16   24   26   29   32   38   42   46   48   50   51   52   54   58   59   61   62   64   67 
LCS_GDT     G      78     G      78     19   31   60     5   15   21   26   29   32   36   42   46   48   50   51   52   54   56   59   61   62   63   64 
LCS_GDT     L      79     L      79     19   31   60     5   14   21   26   28   32   36   42   46   48   50   51   52   54   58   59   61   62   63   66 
LCS_GDT     I      80     I      80     19   31   60     9   16   21   26   28   32   38   42   46   48   50   51   52   54   58   59   61   62   64   66 
LCS_GDT     V      81     V      81      4   31   60     3    7   13   22   28   29   31   34   39   43   46   49   50   53   55   57   61   62   62   64 
LCS_GDT     R      82     R      82      4   30   59     3    4    5    7   10   10   18   27   32   34   38   43   49   51   52   54   57   59   61   64 
LCS_GDT     H      83     H      83      4    8   58     3    4    6   10   16   25   30   33   33   37   39   46   49   51   52   56   58   59   62   64 
LCS_GDT     A      84     A      84      4    8   56     2    4    5    7   10   10   17   23   28   33   35   37   40   43   47   50   53   56   57   58 
LCS_GDT     D      85     D      85      4    8   41     0    4    5    7   10   10   13   19   23   27   31   35   39   43   45   50   53   56   57   61 
LCS_GDT     P      86     P      86      3    8   41     0    3    5    7   10   10   13   17   23   25   31   34   38   42   45   47   51   53   54   57 
LCS_GDT     R      91     R      91      3    8   41     3    3    6    7    8    9   10   12   15   19   21   23   24   26   28   29   31   31   34   36 
LCS_GDT     T      92     T      92      3    8   41     3    3    6    7    8    9   10   12   17   19   22   29   38   42   45   50   51   53   55   57 
LCS_GDT     R      93     R      93      4    8   41     3    3    6    7    8    9   10   14   34   39   44   47   50   52   54   57   61   62   62   64 
LCS_GDT     V      94     V      94      4    8   41     3    3    8   16   25   31   33   42   46   48   50   51   52   54   58   59   61   62   65   70 
LCS_GDT     S      95     S      95      4   29   41     4    4    6   12   29   31   36   42   46   48   50   51   52   54   58   59   61   68   74   81 
LCS_GDT     L      96     L      96     17   29   40     4    9   24   31   32   33   35   35   37   41   45   49   51   52   57   62   67   74   79   82 
LCS_GDT     S      97     S      97     26   29   40     4   12   17   31   32   33   35   35   37   38   40   45   47   52   56   62   67   74   79   82 
LCS_GDT     S      98     S      98     26   29   40     8   15   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     E      99     E      99     26   29   40     8   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     G     100     G     100     26   29   40     8   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     R     101     R     101     26   29   40     8   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     R     102     R     102     26   29   40     8   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     N     103     N     103     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     L     104     L     104     26   29   40     9   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     Y     105     Y     105     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     G     106     G     106     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     N     107     N     107     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     R     108     R     108     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     A     109     A     109     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     K     110     K     110     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     R     111     R     111     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     E     112     E     112     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     E     113     E     113     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     W     114     W     114     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     L     115     L     115     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     V     116     V     116     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     R     117     R     117     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     A     118     A     118     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     M     119     M     119     26   29   40    11   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     H     120     H     120     26   29   40     9   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     A     121     A     121     26   29   40    11   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     C     122     C     122     26   29   40    14   24   26   31   32   33   35   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     L     123     L     123     22   29   40     5    5   12   24   26   31   34   35   37   38   41   45   47   52   57   62   67   74   79   82 
LCS_GDT     D     124     D     124      5   29   40     5    5    7   12   20   25   29   33   35   37   39   43   47   52   57   62   67   74   79   82 
LCS_GDT     E     125     E     125     19   21   40    10   14   18   21   21   22   24   26   28   34   38   41   44   48   57   62   67   74   79   82 
LCS_GDT     S     126     S     126     19   21   40    10   13   18   21   21   22   24   26   27   28   31   35   40   44   50   55   65   74   79   82 
LCS_GDT     E     127     E     127     19   21   40    10   14   18   21   21   22   24   26   27   28   31   33   38   44   50   57   65   74   79   82 
LCS_GDT     R     128     R     128     19   21   40    10   14   18   21   21   22   24   26   34   36   39   43   47   52   57   62   67   74   79   82 
LCS_GDT     A     129     A     129     19   21   40    10   14   18   21   21   22   24   26   32   36   39   42   47   52   57   62   67   74   79   82 
LCS_GDT     L     130     L     130     19   21   40    10   14   18   21   21   22   24   26   27   28   31   33   38   45   52   59   65   74   79   82 
LCS_GDT     L     131     L     131     19   21   40    10   13   18   21   21   22   24   26   27   28   31   33   38   45   52   59   65   74   79   82 
LCS_GDT     A     132     A     132     19   21   40    10   13   18   21   21   22   24   26   28   31   37   41   46   51   57   62   67   74   79   82 
LCS_GDT     A     133     A     133     19   21   40    10   11   18   21   21   22   24   26   27   28   31   33   39   49   57   59   67   74   79   82 
LCS_GDT     A     134     A     134     19   21   40    10   12   18   21   21   22   24   26   27   28   31   33   37   45   52   57   63   69   77   81 
LCS_GDT     G     135     G     135     19   21   40     7   13   18   21   21   22   24   26   27   28   31   32   34   45   52   57   63   70   77   81 
LCS_GDT     P     136     P     136     19   21   39     8   14   18   21   21   22   24   26   27   28   31   33   39   45   52   57   63   70   77   82 
LCS_GDT     L     137     L     137     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   39   52   57   63   69   77   81 
LCS_GDT     L     138     L     138     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   36   40   47   56   66   71   77 
LCS_GDT     T     139     T     139     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   36   40   47   56   66   71   77 
LCS_GDT     R     140     R     140     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   36   43   50   56   66   72   77 
LCS_GDT     L     141     L     141     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   35   38   43   53   60   69   74 
LCS_GDT     A     142     A     142     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   35   38   41   46   48   53   55 
LCS_GDT     Q     143     Q     143     19   21   38     8   14   18   21   21   22   24   26   27   28   31   32   34   35   38   41   46   48   54   57 
LCS_GDT     F     144     F     144      9   21   38     3    3    8   15   19   20   21   23   25   28   28   30   33   35   38   39   43   45   50   55 
LCS_GDT     E     145     E     145      3   21   38     3    3    4    8   10   13   16   17   20   22   23   27   29   30   32   34   34   35   37   39 
LCS_AVERAGE  LCS_A:  22.07  (  12.94   18.05   35.21 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     24     26     31     32     33     38     42     46     48     50     51     52     54     58     62     67     74     79     82 
GDT PERCENT_CA  10.00  17.14  18.57  22.14  22.86  23.57  27.14  30.00  32.86  34.29  35.71  36.43  37.14  38.57  41.43  44.29  47.86  52.86  56.43  58.57
GDT RMS_LOCAL    0.28   0.69   0.83   1.19   1.27   1.37   2.42   2.56   2.82   2.94   3.18   3.41   3.47   3.90   4.39   5.21   5.52   6.03   6.44   6.87
GDT RMS_ALL_CA  14.21  14.54  14.74  15.03  14.99  14.97  24.58  24.73  24.70  24.62  24.45  23.56  23.77  23.46  22.10  14.23  14.14  14.06  13.88  13.53

#      Molecule1      Molecule2       DISTANCE
LGA    P       2      P       2         35.095
LGA    T       3      T       3         33.415
LGA    N       4      N       4         33.971
LGA    Q       5      Q       5         34.309
LGA    D       6      D       6         30.670
LGA    L       7      L       7         28.288
LGA    Q       8      Q       8         29.716
LGA    L       9      L       9         28.733
LGA    A      10      A      10         24.201
LGA    A      11      A      11         23.916
LGA    H      12      H      12         25.588
LGA    L      13      L      13         22.966
LGA    R      14      R      14         18.625
LGA    S      15      S      15         19.884
LGA    Q      16      Q      16         21.328
LGA    V      17      V      17         17.147
LGA    T      18      T      18         14.129
LGA    T      19      T      19         17.042
LGA    L      20      L      20         17.264
LGA    T      21      T      21         12.746
LGA    R      22      R      22         11.404
LGA    R      23      R      23         14.504
LGA    L      24      L      24         14.446
LGA    R      25      R      25         10.598
LGA    R      26      R      26         10.326
LGA    E      27      E      27         14.300
LGA    A      28      A      28         15.438
LGA    Q      29      Q      29         12.928
LGA    A      30      A      30         11.934
LGA    D      31      D      31          7.382
LGA    P      32      P      32          8.202
LGA    V      33      V      33          4.880
LGA    Q      34      Q      34          3.057
LGA    F      35      F      35          2.529
LGA    S      36      S      36          2.722
LGA    Q      37      Q      37          1.893
LGA    L      38      L      38          2.057
LGA    V      39      V      39          2.634
LGA    V      40      V      40          2.401
LGA    L      41      L      41          2.131
LGA    G      42      G      42          2.685
LGA    A      43      A      43          3.042
LGA    I      44      I      44          2.743
LGA    D      45      D      45          2.822
LGA    R      46      R      46          3.823
LGA    L      47      L      47          2.988
LGA    G      48      G      48          8.066
LGA    G      49      G      49         10.060
LGA    D      50      D      50          5.459
LGA    V      51      V      51          3.134
LGA    T      52      T      52          3.492
LGA    P      53      P      53          4.345
LGA    S      54      S      54          3.089
LGA    E      55      E      55          3.893
LGA    L      56      L      56          3.331
LGA    A      57      A      57          2.633
LGA    A      58      A      58          3.738
LGA    A      59      A      59          4.523
LGA    E      60      E      60          3.768
LGA    R      61      R      61          5.149
LGA    M      62      M      62          2.774
LGA    R      63      R      63          1.626
LGA    S      64      S      64          0.417
LGA    S      65      S      65          0.995
LGA    N      66      N      66          0.449
LGA    L      67      L      67          0.249
LGA    A      68      A      68          0.871
LGA    A      69      A      69          0.184
LGA    L      70      L      70          0.487
LGA    L      71      L      71          0.746
LGA    R      72      R      72          0.684
LGA    E      73      E      73          0.526
LGA    L      74      L      74          1.417
LGA    E      75      E      75          1.975
LGA    R      76      R      76          2.021
LGA    G      77      G      77          2.492
LGA    G      78      G      78          3.892
LGA    L      79      L      79          3.839
LGA    I      80      I      80          3.131
LGA    V      81      V      81          8.259
LGA    R      82      R      82         12.454
LGA    H      83      H      83         13.123
LGA    A      84      A      84         18.783
LGA    D      85      D      85         20.185
LGA    P      86      P      86         24.887
LGA    R      91      R      91         22.546
LGA    T      92      T      92         15.196
LGA    R      93      R      93          8.854
LGA    V      94      V      94          4.311
LGA    S      95      S      95          3.700
LGA    L      96      L      96         10.243
LGA    S      97      S      97         15.530
LGA    S      98      S      98         21.699
LGA    E      99      E      99         22.736
LGA    G     100      G     100         17.187
LGA    R     101      R     101         18.352
LGA    R     102      R     102         23.523
LGA    N     103      N     103         21.066
LGA    L     104      L     104         18.383
LGA    Y     105      Y     105         23.351
LGA    G     106      G     106         26.153
LGA    N     107      N     107         23.013
LGA    R     108      R     108         24.888
LGA    A     109      A     109         29.779
LGA    K     110      K     110         29.620
LGA    R     111      R     111         28.267
LGA    E     112      E     112         32.524
LGA    E     113      E     113         35.596
LGA    W     114      W     114         34.139
LGA    L     115      L     115         35.300
LGA    V     116      V     116         40.405
LGA    R     117      R     117         41.710
LGA    A     118      A     118         40.073
LGA    M     119      M     119         43.897
LGA    H     120      H     120         48.358
LGA    A     121      A     121         47.399
LGA    C     122      C     122         46.318
LGA    L     123      L     123         45.640
LGA    D     124      D     124         46.625
LGA    E     125      E     125         44.246
LGA    S     126      S     126         43.554
LGA    E     127      E     127         41.199
LGA    R     128      R     128         42.004
LGA    A     129      A     129         43.574
LGA    L     130      L     130         41.631
LGA    L     131      L     131         40.136
LGA    A     132      A     132         41.866
LGA    A     133      A     133         42.309
LGA    A     134      A     134         40.185
LGA    G     135      G     135         39.932
LGA    P     136      P     136         40.694
LGA    L     137      L     137         40.052
LGA    L     138      L     138         38.136
LGA    T     139      T     139         39.112
LGA    R     140      R     140         40.746
LGA    L     141      L     141         39.099
LGA    A     142      A     142         37.788
LGA    Q     143      Q     143         39.843
LGA    F     144      F     144         44.459
LGA    E     145      E     145         47.517

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  140    4.0     42    2.56    28.393    25.840     1.580

LGA_LOCAL      RMSD =  2.558  Number of atoms =   42  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.582  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 12.892  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.545914 * X  +  -0.043871 * Y  +  -0.836692 * Z  +  32.255127
  Y_new =   0.754434 * X  +  -0.408622 * Y  +   0.513670 * Z  +   0.085579
  Z_new =  -0.364426 * X  +  -0.911649 * Y  +  -0.189975 * Z  +  57.340336 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.776242    1.365350  [ DEG:  -101.7712     78.2288 ]
  Theta =   0.373016    2.768576  [ DEG:    21.3723    158.6277 ]
  Phi   =   0.944401   -2.197191  [ DEG:    54.1102   -125.8898 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0373TS393_1                                  
REMARK     2: T0373.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0373TS393_1.T0373.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  140   4.0   42   2.56  25.840    12.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0373TS393_1
PFRMAT TS
TARGET T0373
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      53.481  -8.395  39.045  1.00 25.00           C
ATOM      2  CA  PRO     2      54.431  -5.091  37.498  1.00 25.00           C
ATOM      3  CA  THR     3      55.703  -2.511  39.911  1.00 25.00           C
ATOM      4  CA  ASN     4      54.160   0.496  41.619  1.00 25.00           C
ATOM      5  CA  GLN     5      50.455   0.947  40.760  1.00 25.00           C
ATOM      6  CA  ASP     6      49.474  -1.311  43.693  1.00 25.00           C
ATOM      7  CA  LEU     7      51.720   0.719  46.039  1.00 25.00           C
ATOM      8  CA  GLN     8      50.122   3.970  44.797  1.00 25.00           C
ATOM      9  CA  LEU     9      46.632   2.508  45.389  1.00 25.00           C
ATOM     10  CA  ALA    10      47.643   1.461  48.931  1.00 25.00           C
ATOM     11  CA  ALA    11      48.982   4.984  49.616  1.00 25.00           C
ATOM     12  CA  HIS    12      45.706   6.504  48.341  1.00 25.00           C
ATOM     13  CA  LEU    13      43.706   4.150  50.605  1.00 25.00           C
ATOM     14  CA  ARG    14      45.877   5.145  53.599  1.00 25.00           C
ATOM     15  CA  SER    15      45.325   8.850  52.801  1.00 25.00           C
ATOM     16  CA  GLN    16      41.546   8.266  52.591  1.00 25.00           C
ATOM     17  CA  VAL    17      41.611   6.460  55.968  1.00 25.00           C
ATOM     18  CA  THR    18      43.568   9.368  57.511  1.00 25.00           C
ATOM     19  CA  THR    19      41.024  11.861  56.104  1.00 25.00           C
ATOM     20  CA  LEU    20      38.151   9.784  57.555  1.00 25.00           C
ATOM     21  CA  THR    21      39.894   9.710  60.965  1.00 25.00           C
ATOM     22  CA  ARG    22      40.362  13.509  60.835  1.00 25.00           C
ATOM     23  CA  ARG    23      36.657  13.960  59.977  1.00 25.00           C
ATOM     24  CA  LEU    24      35.677  11.702  62.910  1.00 25.00           C
ATOM     25  CA  ARG    25      37.922  13.731  65.256  1.00 25.00           C
ATOM     26  CA  ARG    26      36.323  16.983  64.014  1.00 25.00           C
ATOM     27  CA  GLU    27      32.834  15.520  64.605  1.00 25.00           C
ATOM     28  CA  ALA    28      32.042  15.890  68.305  1.00 25.00           C
ATOM     29  CA  GLN    29      34.150  16.805  71.350  1.00 25.00           C
ATOM     30  CA  ALA    30      34.900  13.412  72.854  1.00 25.00           C
ATOM     31  CA  ASP    31      36.950  10.313  72.039  1.00 25.00           C
ATOM     32  CA  PRO    32      35.763   6.895  70.987  1.00 25.00           C
ATOM     33  CA  VAL    33      35.615   4.528  68.034  1.00 25.00           C
ATOM     34  CA  GLN    34      39.168   4.238  66.792  1.00 25.00           C
ATOM     35  CA  PHE    35      41.774   2.947  64.285  1.00 25.00           C
ATOM     36  CA  SER    36      40.433  -0.462  65.402  1.00 25.00           C
ATOM     37  CA  GLN    37      37.255   0.084  63.336  1.00 25.00           C
ATOM     38  CA  LEU    38      39.370   1.015  60.282  1.00 25.00           C
ATOM     39  CA  VAL    39      41.484  -2.144  60.754  1.00 25.00           C
ATOM     40  CA  VAL    40      38.306  -4.267  60.989  1.00 25.00           C
ATOM     41  CA  LEU    41      36.965  -2.660  57.781  1.00 25.00           C
ATOM     42  CA  GLY    42      40.280  -3.384  56.005  1.00 25.00           C
ATOM     43  CA  ALA    43      40.139  -7.028  57.175  1.00 25.00           C
ATOM     44  CA  ILE    44      36.544  -7.328  55.890  1.00 25.00           C
ATOM     45  CA  ASP    45      37.605  -5.869  52.511  1.00 25.00           C
ATOM     46  CA  ARG    46      40.502  -8.365  52.315  1.00 25.00           C
ATOM     47  CA  LEU    47      41.244 -11.619  54.254  1.00 25.00           C
ATOM     48  CA  GLY    48      41.694 -15.372  53.563  1.00 25.00           C
ATOM     49  CA  GLY    49      38.778 -17.764  52.879  1.00 25.00           C
ATOM     50  CA  ASP    50      36.223 -15.293  51.584  1.00 25.00           C
ATOM     51  CA  VAL    51      36.060 -11.674  52.766  1.00 25.00           C
ATOM     52  CA  THR    52      36.662 -13.099  56.268  1.00 25.00           C
ATOM     53  CA  PRO    53      38.310 -11.306  59.183  1.00 25.00           C
ATOM     54  CA  SER    54      39.909 -13.054  62.193  1.00 25.00           C
ATOM     55  CA  GLU    55      43.375 -12.660  60.613  1.00 25.00           C
ATOM     56  CA  LEU    56      42.701  -8.941  60.002  1.00 25.00           C
ATOM     57  CA  ALA    57      41.597  -8.516  63.643  1.00 25.00           C
ATOM     58  CA  ALA    58      44.781 -10.275  64.840  1.00 25.00           C
ATOM     59  CA  ALA    59      46.907  -7.979  62.632  1.00 25.00           C
ATOM     60  CA  GLU    60      45.112  -4.910  64.052  1.00 25.00           C
ATOM     61  CA  ARG    61      45.544  -5.988  67.713  1.00 25.00           C
ATOM     62  CA  MET    62      42.176  -7.342  68.898  1.00 25.00           C
ATOM     63  CA  ARG    63      41.553 -11.085  69.123  1.00 25.00           C
ATOM     64  CA  SER    64      37.814 -11.433  69.244  1.00 25.00           C
ATOM     65  CA  SER    65      35.420  -9.632  71.630  1.00 25.00           C
ATOM     66  CA  ASN    66      37.414  -6.388  71.223  1.00 25.00           C
ATOM     67  CA  LEU    67      37.277  -6.753  67.412  1.00 25.00           C
ATOM     68  CA  ALA    68      33.491  -7.308  67.577  1.00 25.00           C
ATOM     69  CA  ALA    69      33.104  -4.189  69.764  1.00 25.00           C
ATOM     70  CA  LEU    70      35.185  -2.154  67.275  1.00 25.00           C
ATOM     71  CA  LEU    71      33.010  -3.419  64.387  1.00 25.00           C
ATOM     72  CA  ARG    72      29.845  -2.452  66.314  1.00 25.00           C
ATOM     73  CA  GLU    73      31.279   1.039  66.967  1.00 25.00           C
ATOM     74  CA  LEU    74      32.107   1.421  63.247  1.00 25.00           C
ATOM     75  CA  GLU    75      28.546   0.359  62.320  1.00 25.00           C
ATOM     76  CA  ARG    76      27.116   2.908  64.796  1.00 25.00           C
ATOM     77  CA  GLY    77      29.363   5.623  63.468  1.00 25.00           C
ATOM     78  CA  GLY    78      29.888   4.664  59.823  1.00 25.00           C
ATOM     79  CA  LEU    79      33.491   3.628  59.171  1.00 25.00           C
ATOM     80  CA  ILE    80      32.359   0.274  57.916  1.00 25.00           C
ATOM     81  CA  VAL    81      34.304   0.291  54.598  1.00 25.00           C
ATOM     82  CA  ARG    82      35.415  -1.391  51.342  1.00 25.00           C
ATOM     83  CA  HIS    83      34.004  -4.359  49.342  1.00 25.00           C
ATOM     84  CA  ALA    84      34.862  -3.992  45.684  1.00 25.00           C
ATOM     85  CA  ASP    85      34.811  -4.454  41.853  1.00 25.00           C
ATOM     86  CA  PRO    86      35.396  -3.542  38.172  1.00 25.00           C
ATOM     87  CA  GLN    87      33.863  -0.142  38.541  1.00 25.00           C
ATOM     88  CA  ASP    88      32.460   2.793  40.595  1.00 25.00           C
ATOM     89  CA  GLY    89      32.450   2.101  44.334  1.00 25.00           C
ATOM     90  CA  ARG    90      31.907   1.619  48.069  1.00 25.00           C
ATOM     91  CA  ARG    91      30.716   2.772  51.428  1.00 25.00           C
ATOM     92  CA  THR    92      29.868  -0.726  52.604  1.00 25.00           C
ATOM     93  CA  ARG    93      31.420  -3.798  54.284  1.00 25.00           C
ATOM     94  CA  VAL    94      32.253  -4.438  57.958  1.00 25.00           C
ATOM     95  CA  SER    95      31.127  -8.014  57.034  1.00 25.00           C
ATOM     96  CA  LEU    96      31.309 -10.450  59.961  1.00 25.00           C
ATOM     97  CA  SER    97      29.702 -13.801  60.783  1.00 25.00           C
ATOM     98  CA  SER    98      27.025 -14.884  63.227  1.00 25.00           C
ATOM     99  CA  GLU    99      26.682 -13.125  66.611  1.00 25.00           C
ATOM    100  CA  GLY   100      28.950 -10.288  65.394  1.00 25.00           C
ATOM    101  CA  ARG   101      26.844  -9.936  62.214  1.00 25.00           C
ATOM    102  CA  ARG   102      23.647  -9.798  64.318  1.00 25.00           C
ATOM    103  CA  ASN   103      25.201  -7.101  66.549  1.00 25.00           C
ATOM    104  CA  LEU   104      26.198  -5.079  63.453  1.00 25.00           C
ATOM    105  CA  TYR   105      22.636  -5.382  62.079  1.00 25.00           C
ATOM    106  CA  GLY   106      21.215  -4.202  65.435  1.00 25.00           C
ATOM    107  CA  ASN   107      23.608  -1.213  65.424  1.00 25.00           C
ATOM    108  CA  ARG   108      22.536  -0.334  61.855  1.00 25.00           C
ATOM    109  CA  ALA   109      18.852  -0.532  62.887  1.00 25.00           C
ATOM    110  CA  LYS   110      19.543   1.754  65.881  1.00 25.00           C
ATOM    111  CA  ARG   111      21.324   4.255  63.592  1.00 25.00           C
ATOM    112  CA  GLU   112      18.354   4.196  61.174  1.00 25.00           C
ATOM    113  CA  GLU   113      15.942   4.813  64.085  1.00 25.00           C
ATOM    114  CA  TRP   114      18.089   7.754  65.273  1.00 25.00           C
ATOM    115  CA  LEU   115      18.093   9.213  61.732  1.00 25.00           C
ATOM    116  CA  VAL   116      14.284   8.861  61.556  1.00 25.00           C
ATOM    117  CA  ARG   117      13.941  10.621  64.940  1.00 25.00           C
ATOM    118  CA  ALA   118      16.208  13.458  63.723  1.00 25.00           C
ATOM    119  CA  MET   119      14.102  13.810  60.544  1.00 25.00           C
ATOM    120  CA  HIS   120      10.905  13.948  62.647  1.00 25.00           C
ATOM    121  CA  ALA   121      12.459  16.645  64.878  1.00 25.00           C
ATOM    122  CA  CYS   122      14.760  18.623  62.560  1.00 25.00           C
ATOM    123  CA  LEU   123      17.354  18.076  59.853  1.00 25.00           C
ATOM    124  CA  ASP   124      17.958  17.562  56.115  1.00 25.00           C
ATOM    125  CA  GLU   125      20.572  15.782  53.915  1.00 25.00           C
ATOM    126  CA  SER   126      23.619  14.539  51.959  1.00 25.00           C
ATOM    127  CA  GLU   127      24.447  12.071  54.768  1.00 25.00           C
ATOM    128  CA  ARG   128      20.832  10.806  54.754  1.00 25.00           C
ATOM    129  CA  ALA   129      20.981  10.347  50.955  1.00 25.00           C
ATOM    130  CA  LEU   130      24.264   8.405  51.294  1.00 25.00           C
ATOM    131  CA  LEU   131      22.696   6.172  53.981  1.00 25.00           C
ATOM    132  CA  ALA   132      19.678   5.523  51.714  1.00 25.00           C
ATOM    133  CA  ALA   133      22.016   4.616  48.820  1.00 25.00           C
ATOM    134  CA  ALA   134      23.943   2.214  51.098  1.00 25.00           C
ATOM    135  CA  GLY   135      20.657   0.590  52.206  1.00 25.00           C
ATOM    136  CA  PRO   136      19.592   0.190  48.550  1.00 25.00           C
ATOM    137  CA  LEU   137      22.968  -1.413  47.716  1.00 25.00           C
ATOM    138  CA  LEU   138      22.581  -3.823  50.668  1.00 25.00           C
ATOM    139  CA  THR   139      19.060  -4.749  49.481  1.00 25.00           C
ATOM    140  CA  ARG   140      20.391  -5.384  45.947  1.00 25.00           C
ATOM    141  CA  LEU   141      23.171  -7.603  47.366  1.00 25.00           C
ATOM    142  CA  ALA   142      20.595  -9.563  49.413  1.00 25.00           C
ATOM    143  CA  GLN   143      18.430 -10.030  46.289  1.00 25.00           C
ATOM    144  CA  PHE   144      18.138 -10.825  42.544  1.00 25.00           C
ATOM    145  CA  GLU   145      14.685 -12.417  42.836  1.00 25.00           C
ATOM    146  CA  GLU   146      12.521  -9.368  43.726  1.00 25.00           C
ATOM    147  CA  PRO   147      10.158 -10.582  46.428  1.00 25.00           C
TER
END
