
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  140 , name T0373TS393_2
# Molecule2: number of CA atoms  140 ( 1047),  selected  140 , name T0373.pdb
# PARAMETERS: T0373TS393_2.T0373.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    66        21 - 86          4.87    24.01
  LCS_AVERAGE:     37.20

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        95 - 123         1.92    12.76
  LCS_AVERAGE:     15.91

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        97 - 122         0.90    12.98
  LCS_AVERAGE:     12.19

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     P       2     P       2      3   28   40     3    3    3    6   12   21   24   31   40   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     T       3     T       3     25   28   40     3    5    8   17   24   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     N       4     N       4     25   28   40    10   22   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     Q       5     Q       5     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     D       6     D       6     25   28   40    10   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L       7     L       7     25   28   40    10   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     Q       8     Q       8     25   28   40    12   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L       9     L       9     25   28   40    10   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A      10     A      10     25   28   40    10   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A      11     A      11     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     H      12     H      12     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L      13     L      13     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R      14     R      14     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     S      15     S      15     25   28   40    12   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     Q      16     Q      16     25   28   40    11   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     V      17     V      17     25   28   40     8   23   24   25   26   27   31   34   37   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     T      18     T      18     25   28   40    12   23   24   25   26   27   31   34   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     T      19     T      19     25   28   40    12   23   24   25   26   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L      20     L      20     25   28   40    12   23   24   25   26   27   31   34   41   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     T      21     T      21     25   28   66    12   23   24   25   26   27   31   34   37   44   50   63   68   72   77   82   86   91   93   94 
LCS_GDT     R      22     R      22     25   28   66    12   23   24   25   26   27   31   34   41   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R      23     R      23     25   28   66    12   23   24   25   26   27   31   35   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L      24     L      24     25   28   66    12   23   24   25   26   27   32   38   43   49   52   62   68   72   77   82   86   91   93   94 
LCS_GDT     R      25     R      25     25   28   66    12   23   24   25   26   27   36   44   48   52   54   60   68   72   77   82   86   91   93   94 
LCS_GDT     R      26     R      26     25   28   66    12   23   24   25   26   27   35   44   48   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     E      27     E      27     25   28   66    12   23   24   25   26   27   36   44   48   52   57   64   68   72   77   82   86   91   93   94 
LCS_GDT     A      28     A      28     25   28   66     4    5    5   11   25   27   30   34   45   52   54   55   58   69   75   82   85   91   93   94 
LCS_GDT     Q      29     Q      29      5   28   66     4    5    5    7   26   27   31   33   37   42   51   55   61   70   76   82   86   91   93   94 
LCS_GDT     A      30     A      30      5   28   66     4    5    5    7    7   15   25   31   35   42   52   60   68   72   77   82   86   91   93   94 
LCS_GDT     D      31     D      31      5    6   66     4    5    5    7   10   22   31   39   47   52   54   55   63   69   77   82   86   91   93   94 
LCS_GDT     P      32     P      32      5   15   66     4    5    5    6   19   27   36   44   48   52   54   55   60   67   74   79   83   89   93   94 
LCS_GDT     V      33     V      33      3   15   66     9   13   13   14   20   25   36   44   48   52   55   61   67   72   77   82   86   91   93   94 
LCS_GDT     Q      34     Q      34      3   15   66     3    3    5    8   15   23   28   39   45   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     F      35     F      35     12   15   66    12   13   13   14   20   26   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     S      36     S      36     12   15   66    12   13   13   15   20   27   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     Q      37     Q      37     12   15   66    12   13   18   27   30   31   36   44   48   52   54   56   67   71   77   82   86   91   93   94 
LCS_GDT     L      38     L      38     12   15   66    12   13   13   15   20   25   35   44   48   52   54   62   67   72   77   82   86   91   93   94 
LCS_GDT     V      39     V      39     12   15   66    12   13   13   15   20   27   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     V      40     V      40     12   15   66    12   16   26   29   30   31   36   44   48   52   54   62   67   72   77   82   86   91   93   94 
LCS_GDT     L      41     L      41     12   15   66    12   13   13   15   20   26   36   44   48   52   54   55   58   58   60   63   69   76   82   89 
LCS_GDT     G      42     G      42     12   15   66    12   13   13   13   20   25   35   44   48   52   54   55   58   58   64   73   80   83   86   91 
LCS_GDT     A      43     A      43     12   15   66    12   13   13   13   14   26   35   44   48   52   54   55   65   72   77   82   85   91   93   94 
LCS_GDT     I      44     I      44     12   15   66    12   13   13   16   20   27   36   44   48   52   54   55   58   58   60   63   69   75   80   85 
LCS_GDT     D      45     D      45     12   15   66    12   13   13   13   19   26   35   44   48   52   54   55   58   58   60   63   63   68   70   76 
LCS_GDT     R      46     R      46     12   15   66    12   13   13   13   13   15   17   20   35   49   52   55   58   58   60   64   70   77   82   85 
LCS_GDT     L      47     L      47      6   13   66     3    4    6   14   20   25   34   42   48   52   54   55   58   58   60   63   65   72   77   85 
LCS_GDT     G      48     G      48      6    7   66     3    4    6    8   11   15   19   25   30   34   37   47   55   57   60   61   63   64   69   75 
LCS_GDT     G      49     G      49      6    9   66     3    4    6    8   11   15   18   22   30   34   36   44   47   57   60   61   63   63   69   72 
LCS_GDT     D      50     D      50      6   12   66     3    4    6    8   13   20   24   34   42   49   52   54   58   58   60   61   63   64   70   73 
LCS_GDT     V      51     V      51     10   12   66     3    4   10   16   20   27   36   44   48   52   54   55   58   58   60   63   65   70   73   77 
LCS_GDT     T      52     T      52     10   12   66     3    8   11   15   20   27   36   43   48   52   54   55   58   58   60   63   65   70   73   77 
LCS_GDT     P      53     P      53     10   12   66     8    9   11   15   20   27   36   44   48   52   54   55   58   58   60   63   70   79   82   88 
LCS_GDT     S      54     S      54     10   12   66     8   22   25   27   28   29   36   44   48   52   54   55   62   67   73   79   83   89   92   94 
LCS_GDT     E      55     E      55     10   12   66     8    9   11   29   30   31   36   44   48   52   54   56   67   71   77   82   85   91   93   94 
LCS_GDT     L      56     L      56     10   12   66     8    9   22   29   30   31   36   44   48   52   54   56   67   71   77   82   85   91   93   94 
LCS_GDT     A      57     A      57     10   12   66     8    9   14   17   27   27   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A      58     A      58     10   12   66     8    9   11   15   20   25   35   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A      59     A      59     10   12   66     8    9   11   15   19   27   36   44   48   52   57   64   68   72   77   82   86   91   93   94 
LCS_GDT     E      60     E      60     10   18   66     8    9   11   15   20   27   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R      61     R      61      9   24   66     3    4   18   20   25   27   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     M      62     M      62     16   24   66     3    9   16   18   21   26   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R      63     R      63     17   24   66     4   15   16   18   21   26   33   44   48   52   55   61   66   72   77   82   86   91   93   94 
LCS_GDT     S      64     S      64     17   24   66    11   15   16   18   21   26   36   44   48   52   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     S      65     S      65     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   62   68   74   82   87   91   94 
LCS_GDT     N      66     N      66     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   62   70   77   82   87   90   94 
LCS_GDT     L      67     L      67     17   24   66    11   15   16   18   21   27   36   44   48   52   54   58   66   71   76   82   86   91   93   94 
LCS_GDT     A      68     A      68     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   69   75   82   87   94 
LCS_GDT     A      69     A      69     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   63   63   68   71   83 
LCS_GDT     L      70     L      70     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   61   68   76   83   88   94 
LCS_GDT     L      71     L      71     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   63   68   77   82   88 
LCS_GDT     R      72     R      72     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   63   63   68   71   76 
LCS_GDT     E      73     E      73     17   24   66    11   15   16   18   21   27   33   43   48   50   54   55   58   58   60   63   63   68   71   76 
LCS_GDT     L      74     L      74     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   63   63   68   73   80 
LCS_GDT     E      75     E      75     17   24   66    11   15   16   18   21   27   36   44   48   52   54   55   58   58   60   63   63   68   71   76 
LCS_GDT     R      76     R      76     17   24   66     8   15   16   18   21   27   33   44   48   49   54   55   58   58   60   63   63   68   70   74 
LCS_GDT     G      77     G      77     17   24   66    11   15   16   18   21   27   32   43   46   49   52   55   58   58   60   63   63   68   70   76 
LCS_GDT     G      78     G      78     17   24   66     1    3    8   15   21   27   36   44   48   52   54   55   58   58   60   63   63   68   71   76 
LCS_GDT     L      79     L      79     17   24   66     3    6   16   18   21   27   36   44   48   52   54   55   58   58   60   63   63   68   73   79 
LCS_GDT     I      80     I      80      5   24   66     3    5   12   17   21   25   36   44   48   52   54   55   58   58   60   63   63   68   73   77 
LCS_GDT     V      81     V      81      5   24   66     3    5    7   10   20   25   35   44   48   52   54   55   58   58   60   63   63   68   71   76 
LCS_GDT     R      82     R      82      5   24   66     3    5   16   18   21   22   28   39   47   52   54   55   58   58   60   63   63   68   70   74 
LCS_GDT     H      83     H      83      5   24   66     3    5   12   18   21   25   35   42   48   52   54   55   58   58   60   63   63   68   70   74 
LCS_GDT     A      84     A      84      5   24   66     3    7   11   16   20   25   30   39   47   52   54   55   58   58   60   63   63   66   69   74 
LCS_GDT     D      85     D      85      3    8   66     0    3   11   15   20   25   30   39   47   52   54   55   58   58   60   63   63   68   69   74 
LCS_GDT     P      86     P      86      3    8   66     1    4    9   15   19   24   30   39   45   52   54   55   58   58   60   63   63   66   69   74 
LCS_GDT     R      91     R      91      3    8   65     2    3    3    4    8    8    9   10   11   20   22   23   25   38   38   44   47   53   57   60 
LCS_GDT     T      92     T      92      3    8   64     3    3    3    7   11   14   14   15   17   20   22   30   35   38   40   44   48   53   57   60 
LCS_GDT     R      93     R      93      4    8   41     3    4    4    5   11   14   14   15   17   20   22   30   35   38   42   45   50   53   57   59 
LCS_GDT     V      94     V      94      4    8   41     3    4    4    7   11   14   14   15   17   24   28   34   38   42   46   49   52   62   65   68 
LCS_GDT     S      95     S      95      4   29   41     3    4    4    6    8    8   11   14   20   30   32   35   39   43   47   54   60   70   79   87 
LCS_GDT     L      96     L      96     20   29   39     3   10   17   23   30   31   32   33   35   36   38   45   65   72   77   82   85   91   93   94 
LCS_GDT     S      97     S      97     26   29   39     7   13   26   29   30   31   32   33   35   36   41   56   67   72   77   82   85   91   93   94 
LCS_GDT     S      98     S      98     26   29   39     8   16   26   29   30   31   32   33   35   44   57   62   68   72   77   82   86   91   93   94 
LCS_GDT     E      99     E      99     26   29   39     8   23   26   29   30   31   32   33   35   48   57   64   68   72   77   82   86   91   93   94 
LCS_GDT     G     100     G     100     26   29   39     8   23   26   29   30   31   32   33   35   40   57   64   68   72   77   82   86   91   93   94 
LCS_GDT     R     101     R     101     26   29   39     8   23   26   29   30   31   32   33   37   50   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R     102     R     102     26   29   39     8   23   26   29   30   31   32   33   43   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     N     103     N     103     26   29   39    14   23   26   29   30   31   32   33   40   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L     104     L     104     26   29   39     9   23   26   29   30   31   32   33   41   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     Y     105     Y     105     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     G     106     G     106     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     N     107     N     107     26   29   39    14   23   26   29   30   31   32   35   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R     108     R     108     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A     109     A     109     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     K     110     K     110     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R     111     R     111     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     E     112     E     112     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     E     113     E     113     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     W     114     W     114     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L     115     L     115     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     V     116     V     116     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     R     117     R     117     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A     118     A     118     26   29   39    14   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     M     119     M     119     26   29   39    10   23   26   29   30   31   32   33   35   43   53   64   68   72   77   82   86   91   93   94 
LCS_GDT     H     120     H     120     26   29   39    10   23   26   29   30   31   32   33   35   48   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A     121     A     121     26   29   39    13   23   26   29   30   31   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     C     122     C     122     26   29   39     9   21   26   29   30   31   32   34   41   50   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L     123     L     123      4   29   39     3    4   12   15   22   27   32   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     D     124     D     124     12   21   39     3    4    9   13   18   20   25   35   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     E     125     E     125     19   21   39    10   13   18   19   19   20   22   22   35   42   57   64   68   72   77   82   86   91   93   94 
LCS_GDT     S     126     S     126     19   21   39    10   13   18   19   19   20   22   22   25   42   42   54   63   70   77   82   86   91   93   94 
LCS_GDT     E     127     E     127     19   21   39    10   13   18   19   19   23   31   34   37   42   45   59   68   72   77   82   86   91   93   94 
LCS_GDT     R     128     R     128     19   21   39    10   13   18   19   24   27   31   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A     129     A     129     19   21   39    10   13   18   19   20   25   30   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     L     130     L     130     19   21   39    10   13   18   25   26   27   31   34   37   42   50   62   68   72   77   82   86   91   93   94 
LCS_GDT     L     131     L     131     19   21   39    10   13   18   19   21   27   31   34   37   42   54   63   68   72   77   82   86   91   93   94 
LCS_GDT     A     132     A     132     19   21   39    10   13   18   19   19   24   30   36   44   51   58   64   68   72   77   82   86   91   93   94 
LCS_GDT     A     133     A     133     19   21   39    10   11   18   19   24   27   31   35   41   48   57   63   68   72   77   82   86   91   93   94 
LCS_GDT     A     134     A     134     19   21   38    10   12   17   19   19   20   22   22   36   38   46   59   64   72   76   81   86   91   93   94 
LCS_GDT     G     135     G     135     19   21   37     7   13   18   19   19   20   22   22   23   30   43   55   62   72   76   81   86   91   93   94 
LCS_GDT     P     136     P     136     19   21   37     8   13   18   19   19   20   23   30   35   42   54   60   67   72   77   82   86   91   93   94 
LCS_GDT     L     137     L     137     19   21   37     8   13   18   19   19   20   22   22   26   39   47   55   64   72   76   81   86   91   93   94 
LCS_GDT     L     138     L     138     19   21   37     8   13   18   19   19   20   22   22   23   27   31   35   45   58   65   73   78   85   89   93 
LCS_GDT     T     139     T     139     19   21   37     8   13   18   19   19   20   22   22   26   31   35   39   44   53   65   73   78   87   90   93 
LCS_GDT     R     140     R     140     19   21   37     8   13   18   19   19   20   22   22   28   32   39   41   60   65   70   79   82   87   90   94 
LCS_GDT     L     141     L     141     19   21   37     8   13   18   19   19   20   22   22   23   27   31   35   41   51   60   68   77   81   86   91 
LCS_GDT     A     142     A     142     19   21   37     8   13   18   19   19   20   22   22   23   26   30   35   39   44   48   56   63   69   81   91 
LCS_GDT     Q     143     Q     143     19   21   37     8   13   18   19   19   20   22   22   23   27   31   36   41   47   50   56   63   69   82   91 
LCS_GDT     F     144     F     144      3   20   36     0    3    4    4    7   11   14   18   20   21   26   28   29   31   33   41   49   55   61   63 
LCS_GDT     E     145     E     145      3    4   35     1    3    4    4    4    8    8   11   13   16   16   17   21   22   24   26   26   38   41   42 
LCS_AVERAGE  LCS_A:  21.77  (  12.19   15.91   37.20 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     23     26     29     30     31     36     44     48     52     58     64     68     72     77     82     86     91     93     94 
GDT PERCENT_CA  10.00  16.43  18.57  20.71  21.43  22.14  25.71  31.43  34.29  37.14  41.43  45.71  48.57  51.43  55.00  58.57  61.43  65.00  66.43  67.14
GDT RMS_LOCAL    0.28   0.69   0.90   1.08   1.13   1.24   2.58   2.88   3.07   3.42   3.96   4.23   4.40   4.58   4.80   5.09   5.30   5.59   5.71   5.79
GDT RMS_ALL_CA  13.19  13.18  12.67  12.62  12.61  12.66  22.93  23.22  23.59  24.81  13.10  13.04  13.09  13.26  13.29  13.05  13.29  13.11  13.04  12.94

#      Molecule1      Molecule2       DISTANCE
LGA    P       2      P       2         52.342
LGA    T       3      T       3         50.553
LGA    N       4      N       4         49.912
LGA    Q       5      Q       5         48.560
LGA    D       6      D       6         44.271
LGA    L       7      L       7         41.691
LGA    Q       8      Q       8         41.737
LGA    L       9      L       9         39.084
LGA    A      10      A      10         34.301
LGA    A      11      A      11         33.701
LGA    H      12      H      12         33.326
LGA    L      13      L      13         29.322
LGA    R      14      R      14         25.118
LGA    S      15      S      15         25.574
LGA    Q      16      Q      16         24.320
LGA    V      17      V      17         18.919
LGA    T      18      T      18         16.416
LGA    T      19      T      19         17.749
LGA    L      20      L      20         14.904
LGA    T      21      T      21          8.996
LGA    R      22      R      22          9.320
LGA    R      23      R      23          8.896
LGA    L      24      L      24          5.709
LGA    R      25      R      25          1.462
LGA    R      26      R      26          3.777
LGA    E      27      E      27          2.888
LGA    A      28      A      28          8.100
LGA    Q      29      Q      29         10.666
LGA    A      30      A      30          9.257
LGA    D      31      D      31          6.320
LGA    P      32      P      32          2.633
LGA    V      33      V      33          3.674
LGA    Q      34      Q      34          6.273
LGA    F      35      F      35          3.187
LGA    S      36      S      36          1.239
LGA    Q      37      Q      37          3.704
LGA    L      38      L      38          3.927
LGA    V      39      V      39          2.186
LGA    V      40      V      40          1.531
LGA    L      41      L      41          2.422
LGA    G      42      G      42          3.812
LGA    A      43      A      43          3.350
LGA    I      44      I      44          0.872
LGA    D      45      D      45          3.268
LGA    R      46      R      46          5.773
LGA    L      47      L      47          4.914
LGA    G      48      G      48         10.107
LGA    G      49      G      49          9.336
LGA    D      50      D      50          6.759
LGA    V      51      V      51          1.510
LGA    T      52      T      52          4.418
LGA    P      53      P      53          3.995
LGA    S      54      S      54          3.890
LGA    E      55      E      55          2.777
LGA    L      56      L      56          2.358
LGA    A      57      A      57          3.668
LGA    A      58      A      58          3.722
LGA    A      59      A      59          2.850
LGA    E      60      E      60          3.272
LGA    R      61      R      61          2.376
LGA    M      62      M      62          3.942
LGA    R      63      R      63          3.965
LGA    S      64      S      64          3.406
LGA    S      65      S      65          2.544
LGA    N      66      N      66          0.898
LGA    L      67      L      67          1.790
LGA    A      68      A      68          2.353
LGA    A      69      A      69          2.622
LGA    L      70      L      70          2.308
LGA    L      71      L      71          0.689
LGA    R      72      R      72          2.751
LGA    E      73      E      73          4.074
LGA    L      74      L      74          2.698
LGA    E      75      E      75          0.843
LGA    R      76      R      76          3.798
LGA    G      77      G      77          4.941
LGA    G      78      G      78          3.464
LGA    L      79      L      79          2.606
LGA    I      80      I      80          3.539
LGA    V      81      V      81          3.585
LGA    R      82      R      82          5.655
LGA    H      83      H      83          4.631
LGA    A      84      A      84          7.403
LGA    D      85      D      85          7.110
LGA    P      86      P      86          8.715
LGA    R      91      R      91         17.590
LGA    T      92      T      92         15.671
LGA    R      93      R      93         15.525
LGA    V      94      V      94         12.513
LGA    S      95      S      95         12.760
LGA    L      96      L      96         14.131
LGA    S      97      S      97         18.314
LGA    S      98      S      98         22.418
LGA    E      99      E      99         19.278
LGA    G     100      G     100         13.665
LGA    R     101      R     101         16.421
LGA    R     102      R     102         17.872
LGA    N     103      N     103         11.831
LGA    L     104      L     104         11.207
LGA    Y     105      Y     105         17.061
LGA    G     106      G     106         14.601
LGA    N     107      N     107          9.982
LGA    R     108      R     108         15.995
LGA    A     109      A     109         18.371
LGA    K     110      K     110         13.360
LGA    R     111      R     111         15.881
LGA    E     112      E     112         21.731
LGA    E     113      E     113         19.749
LGA    W     114      W     114         17.679
LGA    L     115      L     115         23.752
LGA    V     116      V     116         26.813
LGA    R     117      R     117         23.488
LGA    A     118      A     118         25.807
LGA    M     119      M     119         31.886
LGA    H     120      H     120         31.745
LGA    A     121      A     121         29.535
LGA    C     122      C     122         32.724
LGA    L     123      L     123         34.888
LGA    D     124      D     124         35.546
LGA    E     125      E     125         37.443
LGA    S     126      S     126         39.019
LGA    E     127      E     127         36.379
LGA    R     128      R     128         36.776
LGA    A     129      A     129         40.214
LGA    L     130      L     130         39.410
LGA    L     131      L     131         37.208
LGA    A     132      A     132         39.696
LGA    A     133      A     133         41.877
LGA    A     134      A     134         39.831
LGA    G     135      G     135         39.301
LGA    P     136      P     136         41.454
LGA    L     137      L     137         41.613
LGA    L     138      L     138         39.188
LGA    T     139      T     139         40.808
LGA    R     140      R     140         43.502
LGA    L     141      L     141         41.634
LGA    A     142      A     142         40.146
LGA    Q     143      Q     143         43.301
LGA    F     144      F     144         49.888
LGA    E     145      E     145         53.132

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  140    4.0     44    2.88    31.786    27.274     1.476

LGA_LOCAL      RMSD =  2.882  Number of atoms =   44  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.458  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 11.813  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.319640 * X  +   0.192591 * Y  +  -0.927760 * Z  +  33.718674
  Y_new =  -0.386703 * X  +   0.867361 * Y  +   0.313283 * Z  +   1.926818
  Z_new =   0.865038 * X  +   0.458905 * Y  +  -0.202768 * Z  +  56.123451 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.986853   -1.154740  [ DEG:   113.8383    -66.1617 ]
  Theta =  -1.045227   -2.096366  [ DEG:   -59.8871   -120.1129 ]
  Phi   =  -2.261534    0.880059  [ DEG:  -129.5763     50.4237 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0373TS393_2                                  
REMARK     2: T0373.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0373TS393_2.T0373.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  140   4.0   44   2.88  27.274    11.81
REMARK  ---------------------------------------------------------- 
MOLECULE T0373TS393_2
PFRMAT TS
TARGET T0373
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      36.785  -6.638  27.240  1.00 25.00           C
ATOM      2  CA  PRO     2      37.042  -9.114  30.108  1.00 25.00           C
ATOM      3  CA  THR     3      40.455  -7.918  31.292  1.00 25.00           C
ATOM      4  CA  ASN     4      40.083  -4.927  33.615  1.00 25.00           C
ATOM      5  CA  GLN     5      37.304  -2.505  34.653  1.00 25.00           C
ATOM      6  CA  ASP     6      36.958  -4.305  38.015  1.00 25.00           C
ATOM      7  CA  LEU     7      40.744  -4.080  38.553  1.00 25.00           C
ATOM      8  CA  GLN     8      40.660  -0.337  37.747  1.00 25.00           C
ATOM      9  CA  LEU     9      37.790   0.160  40.233  1.00 25.00           C
ATOM     10  CA  ALA    10      39.755  -1.735  42.919  1.00 25.00           C
ATOM     11  CA  ALA    11      42.829   0.449  42.244  1.00 25.00           C
ATOM     12  CA  HIS    12      40.682   3.606  42.536  1.00 25.00           C
ATOM     13  CA  LEU    13      39.239   2.348  45.853  1.00 25.00           C
ATOM     14  CA  ARG    14      42.774   1.649  47.153  1.00 25.00           C
ATOM     15  CA  SER    15      43.874   5.171  46.127  1.00 25.00           C
ATOM     16  CA  GLN    16      40.843   6.668  47.927  1.00 25.00           C
ATOM     17  CA  VAL    17      41.681   4.648  51.071  1.00 25.00           C
ATOM     18  CA  THR    18      45.306   5.874  50.922  1.00 25.00           C
ATOM     19  CA  THR    19      44.095   9.490  50.574  1.00 25.00           C
ATOM     20  CA  LEU    20      41.776   9.029  53.586  1.00 25.00           C
ATOM     21  CA  THR    21      44.679   7.594  55.632  1.00 25.00           C
ATOM     22  CA  ARG    22      46.875  10.575  54.652  1.00 25.00           C
ATOM     23  CA  ARG    23      44.095  12.996  55.690  1.00 25.00           C
ATOM     24  CA  LEU    24      43.750  11.197  59.053  1.00 25.00           C
ATOM     25  CA  ARG    25      47.535  11.422  59.591  1.00 25.00           C
ATOM     26  CA  ARG    26      47.451  15.165  58.784  1.00 25.00           C
ATOM     27  CA  GLU    27      44.581  15.662  61.270  1.00 25.00           C
ATOM     28  CA  ALA    28      46.785  17.410  63.758  1.00 25.00           C
ATOM     29  CA  GLN    29      49.560  17.481  66.419  1.00 25.00           C
ATOM     30  CA  ALA    30      47.088  15.683  68.728  1.00 25.00           C
ATOM     31  CA  ASP    31      46.629  12.249  70.400  1.00 25.00           C
ATOM     32  CA  PRO    32      43.552  10.300  69.405  1.00 25.00           C
ATOM     33  CA  VAL    33      42.229   8.135  66.497  1.00 25.00           C
ATOM     34  CA  GLN    34      44.142   5.003  67.616  1.00 25.00           C
ATOM     35  CA  PHE    35      44.645   3.704  64.137  1.00 25.00           C
ATOM     36  CA  SER    36      41.068   2.406  64.572  1.00 25.00           C
ATOM     37  CA  GLN    37      40.283   3.277  60.926  1.00 25.00           C
ATOM     38  CA  LEU    38      43.443   1.441  59.781  1.00 25.00           C
ATOM     39  CA  VAL    39      42.442  -1.623  61.849  1.00 25.00           C
ATOM     40  CA  VAL    40      38.940  -1.556  60.298  1.00 25.00           C
ATOM     41  CA  LEU    41      40.468  -1.345  56.793  1.00 25.00           C
ATOM     42  CA  GLY    42      42.751  -4.318  57.584  1.00 25.00           C
ATOM     43  CA  ALA    43      39.741  -6.326  58.838  1.00 25.00           C
ATOM     44  CA  ILE    44      37.816  -5.488  55.636  1.00 25.00           C
ATOM     45  CA  ASP    45      40.805  -6.602  53.517  1.00 25.00           C
ATOM     46  CA  ARG    46      41.003  -9.885  55.479  1.00 25.00           C
ATOM     47  CA  LEU    47      44.677  -9.920  56.621  1.00 25.00           C
ATOM     48  CA  GLY    48      44.467 -13.710  56.863  1.00 25.00           C
ATOM     49  CA  GLY    49      41.915 -14.942  54.325  1.00 25.00           C
ATOM     50  CA  ASP    50      38.386 -15.323  53.126  1.00 25.00           C
ATOM     51  CA  VAL    51      36.586 -12.597  55.041  1.00 25.00           C
ATOM     52  CA  THR    52      33.065 -11.246  55.713  1.00 25.00           C
ATOM     53  CA  PRO    53      32.737 -11.353  59.520  1.00 25.00           C
ATOM     54  CA  SER    54      34.092 -13.754  62.178  1.00 25.00           C
ATOM     55  CA  GLU    55      37.198 -14.413  60.035  1.00 25.00           C
ATOM     56  CA  LEU    56      37.740 -10.645  59.618  1.00 25.00           C
ATOM     57  CA  ALA    57      37.422 -10.154  63.403  1.00 25.00           C
ATOM     58  CA  ALA    58      39.967 -12.954  64.002  1.00 25.00           C
ATOM     59  CA  ALA    59      42.377 -11.333  61.507  1.00 25.00           C
ATOM     60  CA  GLU    60      41.972  -7.958  63.271  1.00 25.00           C
ATOM     61  CA  ARG    61      45.197  -8.659  65.274  1.00 25.00           C
ATOM     62  CA  MET    62      44.356  -5.440  67.135  1.00 25.00           C
ATOM     63  CA  ARG    63      42.878  -6.790  70.372  1.00 25.00           C
ATOM     64  CA  SER    64      40.805  -9.254  68.388  1.00 25.00           C
ATOM     65  CA  SER    65      37.470 -10.271  69.974  1.00 25.00           C
ATOM     66  CA  ASN    66      37.048  -6.745  71.407  1.00 25.00           C
ATOM     67  CA  LEU    67      37.775  -5.232  67.965  1.00 25.00           C
ATOM     68  CA  ALA    68      35.190  -7.563  66.367  1.00 25.00           C
ATOM     69  CA  ALA    69      32.606  -6.545  69.005  1.00 25.00           C
ATOM     70  CA  LEU    70      33.335  -2.847  68.328  1.00 25.00           C
ATOM     71  CA  LEU    71      32.911  -3.428  64.566  1.00 25.00           C
ATOM     72  CA  ARG    72      29.575  -5.204  65.190  1.00 25.00           C
ATOM     73  CA  GLU    73      28.403  -2.285  67.375  1.00 25.00           C
ATOM     74  CA  LEU    74      29.391   0.198  64.632  1.00 25.00           C
ATOM     75  CA  GLU    75      27.465  -1.862  62.040  1.00 25.00           C
ATOM     76  CA  ARG    76      24.392  -1.908  64.324  1.00 25.00           C
ATOM     77  CA  GLY    77      24.343   1.890  63.937  1.00 25.00           C
ATOM     78  CA  GLY    78      27.072   3.587  61.930  1.00 25.00           C
ATOM     79  CA  LEU    79      30.218   2.387  60.123  1.00 25.00           C
ATOM     80  CA  ILE    80      32.447  -0.750  59.967  1.00 25.00           C
ATOM     81  CA  VAL    81      30.635  -3.733  58.368  1.00 25.00           C
ATOM     82  CA  ARG    82      32.403  -6.303  56.174  1.00 25.00           C
ATOM     83  CA  HIS    83      28.939  -7.863  55.598  1.00 25.00           C
ATOM     84  CA  ALA    84      27.999 -10.093  52.663  1.00 25.00           C
ATOM     85  CA  ASP    85      26.221 -12.592  50.401  1.00 25.00           C
ATOM     86  CA  PRO    86      24.724 -14.663  47.622  1.00 25.00           C
ATOM     87  CA  GLN    87      24.724 -12.409  44.608  1.00 25.00           C
ATOM     88  CA  ASP    88      26.778  -9.635  46.174  1.00 25.00           C
ATOM     89  CA  GLY    89      29.312  -7.800  48.278  1.00 25.00           C
ATOM     90  CA  ARG    90      31.126  -4.954  50.117  1.00 25.00           C
ATOM     91  CA  ARG    91      32.745  -2.505  52.589  1.00 25.00           C
ATOM     92  CA  THR    92      35.119  -0.561  54.838  1.00 25.00           C
ATOM     93  CA  ARG    93      36.352   2.247  57.135  1.00 25.00           C
ATOM     94  CA  VAL    94      35.132   2.887  60.687  1.00 25.00           C
ATOM     95  CA  SER    95      34.696   1.337  64.102  1.00 25.00           C
ATOM     96  CA  LEU    96      36.834   0.154  67.082  1.00 25.00           C
ATOM     97  CA  SER    97      35.074   0.957  70.350  1.00 25.00           C
ATOM     98  CA  SER    98      33.136   3.575  72.323  1.00 25.00           C
ATOM     99  CA  GLU    99      35.880   6.082  71.400  1.00 25.00           C
ATOM    100  CA  GLY   100      36.091   4.592  67.879  1.00 25.00           C
ATOM    101  CA  ARG   101      32.289   4.861  67.509  1.00 25.00           C
ATOM    102  CA  ARG   102      32.413   8.517  68.644  1.00 25.00           C
ATOM    103  CA  ASN   103      35.188   9.236  66.104  1.00 25.00           C
ATOM    104  CA  LEU   104      33.116   7.590  63.337  1.00 25.00           C
ATOM    105  CA  TYR   105      30.076   9.701  64.323  1.00 25.00           C
ATOM    106  CA  GLY   106      32.219  12.873  64.233  1.00 25.00           C
ATOM    107  CA  ASN   107      33.530  11.919  60.763  1.00 25.00           C
ATOM    108  CA  ARG   108      29.947  11.337  59.543  1.00 25.00           C
ATOM    109  CA  ALA   109      28.896  14.752  60.922  1.00 25.00           C
ATOM    110  CA  LYS   110      31.860  16.408  59.148  1.00 25.00           C
ATOM    111  CA  ARG   111      30.896  14.677  55.871  1.00 25.00           C
ATOM    112  CA  GLU   112      27.282  15.881  56.268  1.00 25.00           C
ATOM    113  CA  GLU   113      28.516  19.452  56.893  1.00 25.00           C
ATOM    114  CA  TRP   114      30.716  19.266  53.763  1.00 25.00           C
ATOM    115  CA  LEU   115      27.734  18.018  51.710  1.00 25.00           C
ATOM    116  CA  VAL   116      25.585  20.897  53.038  1.00 25.00           C
ATOM    117  CA  ARG   117      28.329  23.404  52.115  1.00 25.00           C
ATOM    118  CA  ALA   118      28.540  21.914  48.593  1.00 25.00           C
ATOM    119  CA  MET   119      24.738  22.183  48.224  1.00 25.00           C
ATOM    120  CA  HIS   120      24.863  25.839  49.358  1.00 25.00           C
ATOM    121  CA  ALA   121      27.637  26.558  46.819  1.00 25.00           C
ATOM    122  CA  CYS   122      27.884  24.082  43.875  1.00 25.00           C
ATOM    123  CA  LEU   123      27.048  20.364  43.922  1.00 25.00           C
ATOM    124  CA  ASP   124      27.926  16.965  42.505  1.00 25.00           C
ATOM    125  CA  GLU   125      25.985  14.014  43.880  1.00 25.00           C
ATOM    126  CA  SER   126      27.747  10.631  43.539  1.00 25.00           C
ATOM    127  CA  GLU   127      28.737  10.745  47.237  1.00 25.00           C
ATOM    128  CA  ARG   128      25.121  11.548  48.206  1.00 25.00           C
ATOM    129  CA  ALA   129      23.874   8.614  46.085  1.00 25.00           C
ATOM    130  CA  LEU   130      26.413   6.290  47.764  1.00 25.00           C
ATOM    131  CA  LEU   131      25.265   7.491  51.214  1.00 25.00           C
ATOM    132  CA  ALA   132      21.614   6.858  50.249  1.00 25.00           C
ATOM    133  CA  ALA   133      22.518   3.335  49.047  1.00 25.00           C
ATOM    134  CA  ALA   134      24.344   2.650  52.342  1.00 25.00           C
ATOM    135  CA  GLY   135      21.294   3.870  54.313  1.00 25.00           C
ATOM    136  CA  PRO   136      19.016   1.591  52.245  1.00 25.00           C
ATOM    137  CA  LEU   137      21.344  -1.377  52.905  1.00 25.00           C
ATOM    138  CA  LEU   138      21.303  -0.607  56.656  1.00 25.00           C
ATOM    139  CA  THR   139      17.477  -0.447  56.606  1.00 25.00           C
ATOM    140  CA  ARG   140      17.336  -3.814  54.784  1.00 25.00           C
ATOM    141  CA  LEU   141      19.699  -5.345  57.380  1.00 25.00           C
ATOM    142  CA  ALA   142      17.507  -3.988  60.212  1.00 25.00           C
ATOM    143  CA  GLN   143      14.394  -5.469  58.545  1.00 25.00           C
ATOM    144  CA  PHE   144      10.909  -3.990  58.340  1.00 25.00           C
ATOM    145  CA  GLU   145       7.476  -4.019  56.753  1.00 25.00           C
ATOM    146  CA  GLU   146       6.054  -2.013  53.839  1.00 25.00           C
ATOM    147  CA  PRO   147       8.950  -1.920  51.422  1.00 25.00           C
TER
END
