
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  140 , name T0373TS393_5
# Molecule2: number of CA atoms  140 ( 1047),  selected  140 , name T0373.pdb
# PARAMETERS: T0373TS393_5.T0373.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        21 - 71          4.99    17.84
  LONGEST_CONTINUOUS_SEGMENT:    51        29 - 79          4.98    20.13
  LONGEST_CONTINUOUS_SEGMENT:    51        30 - 80          4.75    19.86
  LONGEST_CONTINUOUS_SEGMENT:    51        31 - 81          4.70    19.55
  LCS_AVERAGE:     31.62

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30         2 - 31          1.99    16.37
  LCS_AVERAGE:     16.35

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        97 - 122         0.95    12.28
  LCS_AVERAGE:     11.98

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     P       2     P       2      3   30   38     0    3    3    5    6   13   21   28   36   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     T       3     T       3     25   30   38     0   19   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     N       4     N       4     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     Q       5     Q       5     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     D       6     D       6     25   30   38    10   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     L       7     L       7     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     Q       8     Q       8     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     L       9     L       9     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     A      10     A      10     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     A      11     A      11     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     H      12     H      12     25   30   38    13   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     L      13     L      13     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     R      14     R      14     25   30   38    12   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     S      15     S      15     25   30   38    13   22   26   26   29   32   35   36   38   41   46   54   63   68   77   82   90   96   99  104 
LCS_GDT     Q      16     Q      16     25   30   38    13   22   26   26   29   32   35   36   38   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     V      17     V      17     25   30   38    13   22   26   26   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     T      18     T      18     25   30   38    13   22   26   26   29   32   35   36   38   41   49   54   63   68   77   82   90   96   99  104 
LCS_GDT     T      19     T      19     25   30   38    13   22   26   26   29   32   35   36   38   43   49   54   63   68   77   82   90   96   99  104 
LCS_GDT     L      20     L      20     25   30   38    13   22   26   26   29   32   35   36   38   41   46   54   63   68   77   82   90   96   99  104 
LCS_GDT     T      21     T      21     25   30   51    13   22   26   26   29   31   35   36   38   40   46   53   60   68   77   82   90   96   99  104 
LCS_GDT     R      22     R      22     25   30   51    13   22   26   26   29   32   35   36   39   45   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     R      23     R      23     25   30   51    13   22   26   26   29   32   35   36   39   45   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     L      24     L      24     25   30   51    13   22   26   26   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     R      25     R      25     25   30   51    13   22   26   26   29   31   35   36   38   40   46   53   60   67   77   82   90   96   99  104 
LCS_GDT     R      26     R      26     25   30   51    13   22   26   26   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     E      27     E      27     25   30   51    13   22   26   26   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     A      28     A      28      4   30   51     3    3    5    7   20   32   35   36   38   40   46   53   60   67   77   82   90   96   99  104 
LCS_GDT     Q      29     Q      29      4   30   51     1    3   26   26   29   32   35   36   38   40   46   53   60   67   77   82   90   96   99  104 
LCS_GDT     A      30     A      30      4   30   51     3    3    5    7   21   32   35   36   38   40   46   53   60   67   77   82   90   96   99  104 
LCS_GDT     D      31     D      31      3   30   51     3    7   12   15   20   24   35   36   39   45   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     P      32     P      32      3   17   51     3    3   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     V      33     V      33      3   17   51     3    3   11   24   29   32   35   39   44   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     Q      34     Q      34      3   17   51     3    3    3    5   10   15   32   34   40   45   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     F      35     F      35     14   17   51    12   13   13   27   28   32   35   39   44   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     S      36     S      36     14   17   51    12   13   13   15   18   22   27   36   40   42   45   50   59   64   71   80   90   96   99  104 
LCS_GDT     Q      37     Q      37     14   17   51    12   13   13   15   16   21   26   32   38   40   43   47   49   53   56   63   70   81   93  103 
LCS_GDT     L      38     L      38     14   17   51    12   13   13   14   15   24   28   32   38   40   43   47   54   63   70   78   88   94   99  104 
LCS_GDT     V      39     V      39     14   17   51    12   13   13   14   27   32   36   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     V      40     V      40     14   17   51    12   13   13   20   28   31   32   36   40   42   49   54   59   64   70   76   86   93   99  104 
LCS_GDT     L      41     L      41     14   17   51    12   13   14   15   18   24   28   32   38   40   43   47   51   57   64   72   76   79   86   93 
LCS_GDT     G      42     G      42     14   17   51    12   13   13   14   14   15   22   30   36   40   43   47   51   63   70   76   83   89   96  104 
LCS_GDT     A      43     A      43     14   17   51    12   13   13   14   21   28   36   43   45   47   50   54   59   66   74   81   90   96   99  104 
LCS_GDT     I      44     I      44     14   17   51    12   13   13   15   18   24   28   32   38   40   46   54   59   64   70   73   76   83   87   93 
LCS_GDT     D      45     D      45     14   17   51    12   13   13   14   14   15   24   32   38   40   43   47   51   53   56   63   73   79   86   88 
LCS_GDT     R      46     R      46     14   17   51    12   13   13   14   14   15   17   23   29   39   42   45   51   58   61   69   76   85   91  100 
LCS_GDT     L      47     L      47     14   17   51     3   13   13   14   16   20   25   30   41   47   50   54   59   64   70   76   80   86   93  102 
LCS_GDT     G      48     G      48     14   17   51     3    8   13   15   18   23   27   32   38   40   43   47   51   53   61   67   76   79   86   92 
LCS_GDT     G      49     G      49      3   15   51     3    3    4    9   12   14   25   28   33   40   42   45   48   51   56   63   73   79   86   91 
LCS_GDT     D      50     D      50      3   19   51     3    3   13   15   18   23   27   32   38   47   50   54   59   64   70   76   79   84   87   97 
LCS_GDT     V      51     V      51      4   20   51     5   23   25   28   30   33   39   43   45   47   50   54   59   64   70   76   81   89   96  104 
LCS_GDT     T      52     T      52     11   20   51     3    3   11   27   30   33   39   43   45   47   50   54   59   66   72   80   87   94   99  104 
LCS_GDT     P      53     P      53     11   20   51     8   10   24   28   30   33   39   43   45   47   50   54   59   66   73   81   89   96   99  104 
LCS_GDT     S      54     S      54     11   20   51     8   10   15   24   29   33   39   43   45   47   50   54   59   67   77   82   90   96   99  104 
LCS_GDT     E      55     E      55     11   20   51     8   10   13   18   29   33   39   43   45   47   50   54   59   66   74   82   89   96   99  104 
LCS_GDT     L      56     L      56     11   20   51     8   10   13   17   30   33   39   43   45   47   50   54   59   66   74   81   89   96   99  104 
LCS_GDT     A      57     A      57     11   20   51     8   14   23   26   30   33   39   43   45   47   50   54   60   67   77   82   90   96   99  104 
LCS_GDT     A      58     A      58     11   20   51     8   10   13   18   29   33   35   43   45   47   50   54   59   67   77   82   90   96   99  104 
LCS_GDT     A      59     A      59     11   20   51     8   10   13   15   18   24   28   32   43   47   48   54   59   65   70   76   81   93   99  104 
LCS_GDT     E      60     E      60     11   20   51     8   10   13   15   18   32   33   43   45   47   50   54   59   66   77   82   90   96   99  104 
LCS_GDT     R      61     R      61     11   20   51     7   10   13   17   29   33   35   43   45   47   50   54   59   66   75   82   89   96   99  104 
LCS_GDT     M      62     M      62     11   20   51     5   10   18   26   29   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     R      63     R      63      4   20   51     1    4   12   19   26   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     S      64     S      64     14   20   51    11   13   14   15   18   23   35   37   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     S      65     S      65     14   20   51    11   13   14   15   18   24   28   32   38   42   48   51   62   68   74   80   90   96   99  104 
LCS_GDT     N      66     N      66     14   20   51    11   13   14   15   18   24   28   32   38   40   48   51   55   62   74   79   90   96   99  104 
LCS_GDT     L      67     L      67     14   20   51    11   13   14   15   18   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     A      68     A      68     14   20   51    11   13   14   15   18   24   34   39   42   46   50   54   59   64   72   81   90   96   99  104 
LCS_GDT     A      69     A      69     14   20   51    11   13   14   15   18   24   28   32   38   40   43   47   51   58   68   73   83   88   96  104 
LCS_GDT     L      70     L      70     14   20   51    11   13   14   15   18   24   28   32   39   42   45   54   59   64   70   76   86   93   99  104 
LCS_GDT     L      71     L      71     14   19   51    11   13   14   15   18   27   32   34   40   42   45   47   59   63   70   73   79   85   96  103 
LCS_GDT     R      72     R      72     14   18   51    11   13   14   15   18   23   27   32   34   38   42   47   51   57   64   68   73   79   86   88 
LCS_GDT     E      73     E      73     14   18   51    11   13   14   15   18   23   27   32   35   40   43   47   51   53   61   67   73   79   86   88 
LCS_GDT     L      74     L      74     14   18   51    11   13   14   15   18   23   27   32   38   40   43   47   51   53   63   68   73   79   86   88 
LCS_GDT     E      75     E      75     14   18   51     8   13   14   15   18   23   27   32   34   38   42   45   48   53   54   60   67   75   86   88 
LCS_GDT     R      76     R      76     14   18   51     8   13   14   15   18   23   27   30   34   37   41   45   47   51   52   54   64   70   73   85 
LCS_GDT     G      77     G      77     14   18   51     3    8   13   14   18   23   27   32   37   40   43   47   51   53   55   57   67   75   86   88 
LCS_GDT     G      78     G      78      3   15   51     3    5    5   11   17   24   28   32   38   40   43   47   51   53   55   58   64   75   86   88 
LCS_GDT     L      79     L      79      6   13   51     3    5    6    9   15   22   28   31   36   39   43   47   51   53   55   62   68   79   86   88 
LCS_GDT     I      80     I      80      6    9   51     3    4    6    8    8   14   18   24   30   36   40   45   49   53   62   71   76   79   87   96 
LCS_GDT     V      81     V      81      6    9   51     4    4    6    8    8   10   12   15   19   21   23   25   28   38   45   52   57   64   74   85 
LCS_GDT     R      82     R      82      6    9   28     4    5    6    8    8   11   15   17   19   21   23   25   28   31   34   40   42   46   52   78 
LCS_GDT     H      83     H      83      6    9   28     4    5    6    8   10   12   15   17   19   21   23   25   28   31   34   40   42   45   51   78 
LCS_GDT     A      84     A      84      6    9   28     4    5    6    8   10   12   15   17   19   21   23   25   28   31   33   37   40   43   46   53 
LCS_GDT     D      85     D      85      4    9   28     3    4    6    8   10   12   15   17   19   21   23   25   28   30   32   34   37   40   43   47 
LCS_GDT     P      86     P      86      4    9   28     3    4    6    8   10   12   15   17   19   21   23   25   28   30   32   34   37   39   41   43 
LCS_GDT     R      91     R      91      4    8   28     3    3    6    8    9   10   13   15   19   21   23   25   28   30   32   34   37   39   42   43 
LCS_GDT     T      92     T      92      5    8   35     3    4    6    8    9   10   13   14   18   21   23   25   28   30   32   34   37   40   43   47 
LCS_GDT     R      93     R      93      5    8   38     3    4    6    8    9   10   13   15   19   21   23   25   28   31   33   37   40   44   49   78 
LCS_GDT     V      94     V      94      5    8   40     3    4    5    8   10   12   15   17   19   26   35   44   50   59   74   79   89   96   99  104 
LCS_GDT     S      95     S      95      5   29   40     3    4    6   11   18   26   28   35   40   45   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     L      96     L      96      5   29   40     3    4    6   18   29   33   39   43   45   47   50   54   59   66   74   81   90   96   99  104 
LCS_GDT     S      97     S      97     26   29   40     3    4   15   27   29   33   39   43   45   47   50   54   59   64   70   76   81   88   96  104 
LCS_GDT     S      98     S      98     26   29   40     8   16   25   28   30   33   39   43   45   47   50   54   59   66   70   77   86   93   98  104 
LCS_GDT     E      99     E      99     26   29   40     8   23   25   28   30   33   39   43   45   47   50   54   59   66   73   81   87   96   99  104 
LCS_GDT     G     100     G     100     26   29   40     8   23   25   28   30   33   39   43   45   47   50   54   59   66   74   81   90   96   99  104 
LCS_GDT     R     101     R     101     26   29   40     8   23   25   28   30   33   39   43   45   47   50   54   59   66   73   81   90   96   99  104 
LCS_GDT     R     102     R     102     26   29   40     8   23   25   28   30   33   39   43   45   47   50   54   59   66   73   81   90   96   99  104 
LCS_GDT     N     103     N     103     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   59   67   74   82   90   96   99  104 
LCS_GDT     L     104     L     104     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     Y     105     Y     105     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     G     106     G     106     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     N     107     N     107     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     R     108     R     108     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     A     109     A     109     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     K     110     K     110     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     R     111     R     111     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     E     112     E     112     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     E     113     E     113     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     W     114     W     114     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     L     115     L     115     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     V     116     V     116     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     R     117     R     117     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     A     118     A     118     26   29   41    14   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     M     119     M     119     26   29   41    13   23   25   28   30   33   39   43   45   47   50   54   63   68   77   82   90   96   99  104 
LCS_GDT     H     120     H     120     26   29   41     8   23   25   28   30   33   39   43   45   47   50   54   62   68   77   82   90   96   99  104 
LCS_GDT     A     121     A     121     26   29   41    10   23   25   28   30   33   39   43   45   47   50   54   59   67   77   82   90   96   99  104 
LCS_GDT     C     122     C     122     26   29   41     7   22   25   28   30   33   39   43   45   47   50   54   59   66   75   81   90   96   99  104 
LCS_GDT     L     123     L     123     23   29   41     3    5   18   26   30   33   39   43   45   47   50   54   62   67   77   82   90   96   99  104 
LCS_GDT     D     124     D     124      5   29   41     3    4    6   11   19   19   21   28   38   41   45   54   63   68   77   82   90   96   99  104 
LCS_GDT     E     125     E     125     19   22   41    10   13   18   19   20   24   25   28   38   38   43   51   62   67   77   82   90   96   99  104 
LCS_GDT     S     126     S     126     19   22   41    10   13   18   19   20   24   25   28   30   34   41   44   54   56   62   77   81   89   99  104 
LCS_GDT     E     127     E     127     19   22   41    10   13   18   19   20   24   25   28   29   34   41   44   50   58   68   77   84   89   99  104 
LCS_GDT     R     128     R     128     19   22   41    10   13   18   19   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     A     129     A     129     19   22   41    10   13   18   19   20   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     L     130     L     130     19   22   41    10   13   18   19   20   24   25   36   38   40   44   52   60   67   77   82   90   96   99  104 
LCS_GDT     L     131     L     131     19   22   41    10   13   18   23   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     A     132     A     132     19   22   41    10   13   18   19   25   32   35   36   38   41   47   54   63   68   77   82   90   96   99  104 
LCS_GDT     A     133     A     133     19   22   41    10   11   18   19   22   32   35   36   38   41   46   54   63   68   77   82   90   96   99  104 
LCS_GDT     A     134     A     134     19   22   41    10   11   17   23   29   32   35   36   38   40   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     G     135     G     135     19   22   41     7   13   18   19   20   24   25   31   37   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     P     136     P     136     19   22   41     8   13   18   19   20   24   25   28   35   41   46   54   63   68   77   82   90   96   99  104 
LCS_GDT     L     137     L     137     19   22   41     8   13   18   19   20   24   28   33   37   41   46   53   63   68   77   82   90   96   99  104 
LCS_GDT     L     138     L     138     19   22   41     8   13   18   19   20   24   25   28   35   41   46   52   63   68   77   82   90   96   99  104 
LCS_GDT     T     139     T     139     19   22   41     8   13   18   19   20   24   25   28   35   41   45   51   62   68   75   82   90   96   99  104 
LCS_GDT     R     140     R     140     19   22   41     8   13   18   19   20   24   25   28   35   41   46   52   63   68   77   82   90   96   99  104 
LCS_GDT     L     141     L     141     19   22   41     8   13   18   19   20   24   25   28   35   41   45   51   62   68   74   82   90   96   99  104 
LCS_GDT     A     142     A     142     19   22   41     8   13   18   19   20   24   25   28   30   38   43   51   55   59   67   75   79   85   96  102 
LCS_GDT     Q     143     Q     143     19   22   41     8   13   18   19   20   24   25   28   30   38   43   51   55   60   69   75   83   92   96  102 
LCS_GDT     F     144     F     144     17   22   41     4   11   14   18   20   24   25   28   30   38   43   51   55   60   69   75   83   92   96  102 
LCS_GDT     E     145     E     145     12   22   41     3    3   10   14   17   22   22   26   29   30   31   33   43   46   60   67   76   81   88   93 
LCS_AVERAGE  LCS_A:  19.98  (  11.98   16.35   31.62 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     23     26     28     30     33     39     43     45     47     50     54     63     68     77     82     90     96     99    104 
GDT PERCENT_CA  10.00  16.43  18.57  20.00  21.43  23.57  27.86  30.71  32.14  33.57  35.71  38.57  45.00  48.57  55.00  58.57  64.29  68.57  70.71  74.29
GDT RMS_LOCAL    0.28   0.71   0.79   0.97   1.24   1.50   2.00   2.30   2.43   2.61   2.90   3.49   4.76   4.94   5.45   5.67   6.03   6.29   6.43   6.66
GDT RMS_ALL_CA  11.59  12.14  20.27  12.29  12.34  12.53  12.79  12.95  12.96  13.07  12.79  12.12  11.20  11.19  11.10  10.96  10.61  10.43  10.42  10.30

#      Molecule1      Molecule2       DISTANCE
LGA    P       2      P       2         31.249
LGA    T       3      T       3         30.227
LGA    N       4      N       4         29.636
LGA    Q       5      Q       5         28.529
LGA    D       6      D       6         25.951
LGA    L       7      L       7         24.433
LGA    Q       8      Q       8         24.244
LGA    L       9      L       9         22.260
LGA    A      10      A      10         19.541
LGA    A      11      A      11         19.136
LGA    H      12      H      12         18.892
LGA    L      13      L      13         16.584
LGA    R      14      R      14         13.990
LGA    S      15      S      15         14.430
LGA    Q      16      Q      16         13.649
LGA    V      17      V      17         11.320
LGA    T      18      T      18          9.560
LGA    T      19      T      19         10.524
LGA    L      20      L      20          9.841
LGA    T      21      T      21          8.677
LGA    R      22      R      22          8.980
LGA    R      23      R      23          8.677
LGA    L      24      L      24          9.175
LGA    R      25      R      25         10.492
LGA    R      26      R      26         11.036
LGA    E      27      E      27         10.218
LGA    A      28      A      28         12.368
LGA    Q      29      Q      29         15.053
LGA    A      30      A      30         13.601
LGA    D      31      D      31          8.906
LGA    P      32      P      32          3.648
LGA    V      33      V      33          6.120
LGA    Q      34      Q      34          9.188
LGA    F      35      F      35          6.291
LGA    S      36      S      36          7.787
LGA    Q      37      Q      37         11.855
LGA    L      38      L      38          9.902
LGA    V      39      V      39          4.275
LGA    V      40      V      40          7.550
LGA    L      41      L      41         10.966
LGA    G      42      G      42          8.534
LGA    A      43      A      43          3.939
LGA    I      44      I      44          8.153
LGA    D      45      D      45         11.423
LGA    R      46      R      46          8.734
LGA    L      47      L      47          5.045
LGA    G      48      G      48          9.258
LGA    G      49      G      49         10.414
LGA    D      50      D      50          5.014
LGA    V      51      V      51          2.891
LGA    T      52      T      52          3.532
LGA    P      53      P      53          3.116
LGA    S      54      S      54          3.037
LGA    E      55      E      55          2.950
LGA    L      56      L      56          2.572
LGA    A      57      A      57          0.239
LGA    A      58      A      58          3.970
LGA    A      59      A      59          5.405
LGA    E      60      E      60          3.967
LGA    R      61      R      61          3.575
LGA    M      62      M      62          1.848
LGA    R      63      R      63          3.220
LGA    S      64      S      64          4.545
LGA    S      65      S      65          6.431
LGA    N      66      N      66          6.514
LGA    L      67      L      67          3.555
LGA    A      68      A      68          5.666
LGA    A      69      A      69          8.363
LGA    L      70      L      70          7.257
LGA    L      71      L      71          8.781
LGA    R      72      R      72         11.796
LGA    E      73      E      73         12.703
LGA    L      74      L      74         12.659
LGA    E      75      E      75         14.652
LGA    R      76      R      76         16.948
LGA    G      77      G      77         15.429
LGA    G      78      G      78         14.653
LGA    L      79      L      79         12.742
LGA    I      80      I      80         10.450
LGA    V      81      V      81         14.155
LGA    R      82      R      82         17.563
LGA    H      83      H      83         19.555
LGA    A      84      A      84         24.513
LGA    D      85      D      85         27.783
LGA    P      86      P      86         34.748
LGA    R      91      R      91         24.495
LGA    T      92      T      92         20.131
LGA    R      93      R      93         16.115
LGA    V      94      V      94         10.239
LGA    S      95      S      95          6.830
LGA    L      96      L      96          3.200
LGA    S      97      S      97          2.981
LGA    S      98      S      98          2.234
LGA    E      99      E      99          1.954
LGA    G     100      G     100          1.662
LGA    R     101      R     101          1.023
LGA    R     102      R     102          0.882
LGA    N     103      N     103          0.911
LGA    L     104      L     104          1.091
LGA    Y     105      Y     105          1.558
LGA    G     106      G     106          1.367
LGA    N     107      N     107          0.960
LGA    R     108      R     108          1.392
LGA    A     109      A     109          1.472
LGA    K     110      K     110          0.781
LGA    R     111      R     111          1.173
LGA    E     112      E     112          1.607
LGA    E     113      E     113          1.184
LGA    W     114      W     114          0.906
LGA    L     115      L     115          1.558
LGA    V     116      V     116          1.894
LGA    R     117      R     117          1.157
LGA    A     118      A     118          1.035
LGA    M     119      M     119          2.480
LGA    H     120      H     120          2.718
LGA    A     121      A     121          1.016
LGA    C     122      C     122          0.541
LGA    L     123      L     123          1.509
LGA    D     124      D     124          6.217
LGA    E     125      E     125          8.569
LGA    S     126      S     126         10.882
LGA    E     127      E     127         11.654
LGA    R     128      R     128          9.323
LGA    A     129      A     129          9.470
LGA    L     130      L     130         12.220
LGA    L     131      L     131         12.166
LGA    A     132      A     132         10.598
LGA    A     133      A     133         12.167
LGA    A     134      A     134         14.838
LGA    G     135      G     135         14.562
LGA    P     136      P     136         13.698
LGA    L     137      L     137         16.131
LGA    L     138      L     138         18.078
LGA    T     139      T     139         17.820
LGA    R     140      R     140         18.984
LGA    L     141      L     141         21.571
LGA    A     142      A     142         22.253
LGA    Q     143      Q     143         22.843
LGA    F     144      F     144         24.980
LGA    E     145      E     145         28.150

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  140    4.0     43    2.30    31.429    26.673     1.792

LGA_LOCAL      RMSD =  2.299  Number of atoms =   43  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.074  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  9.926  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.021315 * X  +   0.944587 * Y  +  -0.327569 * Z  +  45.610641
  Y_new =  -0.174907 * X  +   0.319068 * Y  +   0.931452 * Z  +  -0.523281
  Z_new =   0.984354 * X  +   0.077148 * Y  +   0.158414 * Z  +  55.597607 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.453196   -2.688396  [ DEG:    25.9662   -154.0338 ]
  Theta =  -1.393671   -1.747922  [ DEG:   -79.8515   -100.1485 ]
  Phi   =  -1.692063    1.449530  [ DEG:   -96.9481     83.0519 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0373TS393_5                                  
REMARK     2: T0373.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0373TS393_5.T0373.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  140   4.0   43   2.30  26.673     9.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0373TS393_5
PFRMAT TS
TARGET T0373
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      57.122 -24.360  49.843  1.00 25.00           C
ATOM      2  CA  PRO     2      59.704 -24.366  47.036  1.00 25.00           C
ATOM      3  CA  THR     3      61.390 -21.686  49.222  1.00 25.00           C
ATOM      4  CA  ASN     4      63.178 -18.403  49.746  1.00 25.00           C
ATOM      5  CA  GLN     5      61.545 -15.640  47.656  1.00 25.00           C
ATOM      6  CA  ASP     6      58.251 -16.122  49.551  1.00 25.00           C
ATOM      7  CA  LEU     7      60.112 -15.905  52.891  1.00 25.00           C
ATOM      8  CA  GLN     8      61.841 -12.685  51.745  1.00 25.00           C
ATOM      9  CA  LEU     9      58.462 -11.209  50.711  1.00 25.00           C
ATOM     10  CA  ALA    10      56.988 -12.127  54.124  1.00 25.00           C
ATOM     11  CA  ALA    11      59.961 -10.472  55.882  1.00 25.00           C
ATOM     12  CA  HIS    12      59.485  -7.315  53.767  1.00 25.00           C
ATOM     13  CA  LEU    13      55.760  -7.255  54.653  1.00 25.00           C
ATOM     14  CA  ARG    14      56.613  -7.620  58.368  1.00 25.00           C
ATOM     15  CA  SER    15      59.124  -4.740  58.100  1.00 25.00           C
ATOM     16  CA  GLN    16      56.482  -2.562  56.386  1.00 25.00           C
ATOM     17  CA  VAL    17      53.970  -3.385  59.158  1.00 25.00           C
ATOM     18  CA  THR    18      56.567  -2.465  61.818  1.00 25.00           C
ATOM     19  CA  THR    19      57.259   0.851  60.031  1.00 25.00           C
ATOM     20  CA  LEU    20      53.504   1.593  59.900  1.00 25.00           C
ATOM     21  CA  THR    21      53.199   0.832  63.641  1.00 25.00           C
ATOM     22  CA  ARG    22      56.143   3.168  64.381  1.00 25.00           C
ATOM     23  CA  ARG    23      54.508   5.930  62.292  1.00 25.00           C
ATOM     24  CA  LEU    24      51.214   5.448  64.187  1.00 25.00           C
ATOM     25  CA  ARG    25      53.075   5.666  67.527  1.00 25.00           C
ATOM     26  CA  ARG    26      54.805   8.885  66.381  1.00 25.00           C
ATOM     27  CA  GLU    27      51.426  10.362  65.347  1.00 25.00           C
ATOM     28  CA  ALA    28      51.144  13.697  67.269  1.00 25.00           C
ATOM     29  CA  GLN    29      51.611  13.021  71.016  1.00 25.00           C
ATOM     30  CA  ALA    30      49.521  11.018  73.395  1.00 25.00           C
ATOM     31  CA  ASP    31      48.971   8.389  70.641  1.00 25.00           C
ATOM     32  CA  PRO    32      46.300   6.455  68.749  1.00 25.00           C
ATOM     33  CA  VAL    33      44.694   4.644  65.813  1.00 25.00           C
ATOM     34  CA  GLN    34      45.653   1.083  66.474  1.00 25.00           C
ATOM     35  CA  PHE    35      46.238   1.049  62.734  1.00 25.00           C
ATOM     36  CA  SER    36      45.391   1.209  59.002  1.00 25.00           C
ATOM     37  CA  GLN    37      48.439  -0.963  58.192  1.00 25.00           C
ATOM     38  CA  LEU    38      47.368  -3.503  60.849  1.00 25.00           C
ATOM     39  CA  VAL    39      43.830  -3.583  59.383  1.00 25.00           C
ATOM     40  CA  VAL    40      45.270  -4.149  55.879  1.00 25.00           C
ATOM     41  CA  LEU    41      47.446  -7.007  57.208  1.00 25.00           C
ATOM     42  CA  GLY    42      44.390  -8.581  58.896  1.00 25.00           C
ATOM     43  CA  ALA    43      42.414  -8.311  55.626  1.00 25.00           C
ATOM     44  CA  ILE    44      45.295  -9.963  53.719  1.00 25.00           C
ATOM     45  CA  ASP    45      45.409 -12.794  56.296  1.00 25.00           C
ATOM     46  CA  ARG    46      41.627 -13.292  55.953  1.00 25.00           C
ATOM     47  CA  LEU    47      42.069 -13.947  52.204  1.00 25.00           C
ATOM     48  CA  GLY    48      40.823 -17.539  51.823  1.00 25.00           C
ATOM     49  CA  GLY    49      37.147 -18.483  52.532  1.00 25.00           C
ATOM     50  CA  ASP    50      34.631 -15.668  53.059  1.00 25.00           C
ATOM     51  CA  VAL    51      36.784 -12.540  53.317  1.00 25.00           C
ATOM     52  CA  THR    52      34.713 -11.456  56.291  1.00 25.00           C
ATOM     53  CA  PRO    53      36.497 -10.961  59.631  1.00 25.00           C
ATOM     54  CA  SER    54      35.937 -12.377  63.145  1.00 25.00           C
ATOM     55  CA  GLU    55      38.165 -15.380  62.317  1.00 25.00           C
ATOM     56  CA  LEU    56      40.895 -13.027  61.021  1.00 25.00           C
ATOM     57  CA  ALA    57      40.661 -10.948  64.228  1.00 25.00           C
ATOM     58  CA  ALA    58      40.955 -14.130  66.341  1.00 25.00           C
ATOM     59  CA  ALA    59      44.030 -15.210  64.329  1.00 25.00           C
ATOM     60  CA  GLU    60      45.611 -11.760  64.845  1.00 25.00           C
ATOM     61  CA  ARG    61      44.953 -11.362  68.555  1.00 25.00           C
ATOM     62  CA  MET    62      42.255  -8.655  68.534  1.00 25.00           C
ATOM     63  CA  ARG    63      38.852 -10.380  69.056  1.00 25.00           C
ATOM     64  CA  SER    64      37.462  -6.818  69.403  1.00 25.00           C
ATOM     65  CA  SER    65      34.284  -5.692  67.587  1.00 25.00           C
ATOM     66  CA  ASN    66      36.131  -2.639  66.196  1.00 25.00           C
ATOM     67  CA  LEU    67      38.988  -4.885  64.990  1.00 25.00           C
ATOM     68  CA  ALA    68      36.468  -7.218  63.293  1.00 25.00           C
ATOM     69  CA  ALA    69      34.807  -4.221  61.583  1.00 25.00           C
ATOM     70  CA  LEU    70      38.223  -2.989  60.368  1.00 25.00           C
ATOM     71  CA  LEU    71      39.019  -6.473  58.994  1.00 25.00           C
ATOM     72  CA  ARG    72      35.646  -6.556  57.181  1.00 25.00           C
ATOM     73  CA  GLU    73      36.343  -3.102  55.679  1.00 25.00           C
ATOM     74  CA  LEU    74      39.793  -4.280  54.508  1.00 25.00           C
ATOM     75  CA  GLU    75      38.218  -7.384  52.911  1.00 25.00           C
ATOM     76  CA  ARG    76      35.635  -5.188  51.130  1.00 25.00           C
ATOM     77  CA  GLY    77      37.316  -1.788  50.742  1.00 25.00           C
ATOM     78  CA  GLY    78      40.032   0.494  52.220  1.00 25.00           C
ATOM     79  CA  LEU    79      42.943   0.656  54.663  1.00 25.00           C
ATOM     80  CA  ILE    80      40.599   0.486  57.664  1.00 25.00           C
ATOM     81  CA  VAL    81      39.007   3.811  58.479  1.00 25.00           C
ATOM     82  CA  ARG    82      37.744   6.386  60.914  1.00 25.00           C
ATOM     83  CA  HIS    83      34.682   5.683  63.034  1.00 25.00           C
ATOM     84  CA  ALA    84      33.193   7.531  65.964  1.00 25.00           C
ATOM     85  CA  ASP    85      29.781   8.673  67.316  1.00 25.00           C
ATOM     86  CA  PRO    86      29.926  10.770  70.528  1.00 25.00           C
ATOM     87  CA  GLN    87      31.458  10.400  73.990  1.00 25.00           C
ATOM     88  CA  ASP    88      35.274  10.416  73.633  1.00 25.00           C
ATOM     89  CA  GLY    89      36.032   7.550  71.238  1.00 25.00           C
ATOM     90  CA  ARG    90      37.443   5.515  68.388  1.00 25.00           C
ATOM     91  CA  ARG    91      40.160   2.877  67.675  1.00 25.00           C
ATOM     92  CA  THR    92      40.741   1.629  64.136  1.00 25.00           C
ATOM     93  CA  ARG    93      37.199   1.345  62.769  1.00 25.00           C
ATOM     94  CA  VAL    94      34.023   0.684  60.687  1.00 25.00           C
ATOM     95  CA  SER    95      31.429  -1.187  58.617  1.00 25.00           C
ATOM     96  CA  LEU    96      30.077  -2.839  55.489  1.00 25.00           C
ATOM     97  CA  SER    97      32.398  -1.529  52.793  1.00 25.00           C
ATOM     98  CA  SER    98      30.241   1.542  52.253  1.00 25.00           C
ATOM     99  CA  GLU    99      30.605   4.304  54.880  1.00 25.00           C
ATOM    100  CA  GLY   100      33.986   2.864  55.961  1.00 25.00           C
ATOM    101  CA  ARG   101      35.141   2.773  52.311  1.00 25.00           C
ATOM    102  CA  ARG   102      34.055   6.417  51.851  1.00 25.00           C
ATOM    103  CA  ASN   103      35.971   7.414  55.013  1.00 25.00           C
ATOM    104  CA  LEU   104      39.087   5.595  53.728  1.00 25.00           C
ATOM    105  CA  TYR   105      38.783   7.402  50.364  1.00 25.00           C
ATOM    106  CA  GLY   106      38.468  10.764  52.170  1.00 25.00           C
ATOM    107  CA  ASN   107      41.576   9.962  54.259  1.00 25.00           C
ATOM    108  CA  ARG   108      43.507   9.049  51.080  1.00 25.00           C
ATOM    109  CA  ALA   109      42.423  12.340  49.448  1.00 25.00           C
ATOM    110  CA  LYS   110      43.564  14.281  52.547  1.00 25.00           C
ATOM    111  CA  ARG   111      46.947  12.488  52.456  1.00 25.00           C
ATOM    112  CA  GLU   112      47.326  13.341  48.741  1.00 25.00           C
ATOM    113  CA  GLU   113      46.506  17.010  49.475  1.00 25.00           C
ATOM    114  CA  TRP   114      49.106  17.054  52.287  1.00 25.00           C
ATOM    115  CA  LEU   115      51.718  15.541  49.929  1.00 25.00           C
ATOM    116  CA  VAL   116      50.906  18.195  47.288  1.00 25.00           C
ATOM    117  CA  ARG   117      51.271  20.956  49.916  1.00 25.00           C
ATOM    118  CA  ALA   118      54.651  19.517  50.996  1.00 25.00           C
ATOM    119  CA  MET   119      55.807  19.425  47.347  1.00 25.00           C
ATOM    120  CA  HIS   120      54.721  23.069  46.886  1.00 25.00           C
ATOM    121  CA  ALA   121      56.637  24.066  50.049  1.00 25.00           C
ATOM    122  CA  CYS   122      59.248  21.522  51.057  1.00 25.00           C
ATOM    123  CA  LEU   123      60.848  18.379  49.610  1.00 25.00           C
ATOM    124  CA  ASP   124      59.949  15.147  47.875  1.00 25.00           C
ATOM    125  CA  GLU   125      57.486  12.503  46.539  1.00 25.00           C
ATOM    126  CA  SER   126      58.777   9.061  47.612  1.00 25.00           C
ATOM    127  CA  GLU   127      55.547   8.431  49.569  1.00 25.00           C
ATOM    128  CA  ARG   128      53.469   9.436  46.513  1.00 25.00           C
ATOM    129  CA  ALA   129      55.514   7.060  44.313  1.00 25.00           C
ATOM    130  CA  LEU   130      54.973   4.224  46.828  1.00 25.00           C
ATOM    131  CA  LEU   131      51.209   4.929  46.852  1.00 25.00           C
ATOM    132  CA  ALA   132      51.149   4.863  43.022  1.00 25.00           C
ATOM    133  CA  ALA   133      53.027   1.526  43.025  1.00 25.00           C
ATOM    134  CA  ALA   134      50.527   0.093  45.548  1.00 25.00           C
ATOM    135  CA  GLY   135      47.610   1.273  43.365  1.00 25.00           C
ATOM    136  CA  PRO   136      49.215  -0.360  40.296  1.00 25.00           C
ATOM    137  CA  LEU   137      49.667  -3.629  42.241  1.00 25.00           C
ATOM    138  CA  LEU   138      45.997  -3.517  43.330  1.00 25.00           C
ATOM    139  CA  THR   139      44.912  -2.944  39.702  1.00 25.00           C
ATOM    140  CA  ARG   140      47.050  -5.911  38.568  1.00 25.00           C
ATOM    141  CA  LEU   141      45.484  -8.109  41.285  1.00 25.00           C
ATOM    142  CA  ALA   142      41.982  -7.034  40.171  1.00 25.00           C
ATOM    143  CA  GLN   143      42.856  -7.866  36.536  1.00 25.00           C
ATOM    144  CA  PHE   144      45.274 -10.766  36.200  1.00 25.00           C
ATOM    145  CA  GLU   145      45.586 -13.060  33.134  1.00 25.00           C
ATOM    146  CA  GLU   146      48.384 -12.768  30.512  1.00 25.00           C
ATOM    147  CA  PRO   147      49.062  -9.410  32.099  1.00 25.00           C
TER
END
