
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0378TS168_1-D2
# Molecule2: number of CA atoms  142 ( 1079),  selected  142 , name T0378_D2.pdb
# PARAMETERS: T0378TS168_1-D2.T0378_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   142       100 - 254         3.28     3.28
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    68       100 - 167         1.98     3.45
  LCS_AVERAGE:     35.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24       107 - 130         0.95     3.73
  LONGEST_CONTINUOUS_SEGMENT:    24       108 - 131         1.00     3.89
  LCS_AVERAGE:      9.05

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     G     100     G     100      5   68  142     2   15   39   69   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     101     L     101      5   68  142     7   27   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     102     T     102      5   68  142     5   25   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     103     L     103      5   68  142     5   10   25   57   81   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     104     L     104      5   68  142     3    4   18   41   70   93  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     105     L     105     23   68  142     6   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     106     D     106     23   68  142     6   30   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     107     G     107     24   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     108     V     108     24   68  142     3   13   39   69   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     Q     109     Q     109     24   68  142     4   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     110     D     110     24   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     111     P     111     24   68  142    14   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     112     G     112     24   68  142    14   29   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     N     113     N     113     24   68  142    14   23   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     114     V     114     24   68  142    14   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     115     G     115     24   68  142    14   30   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     116     T     116     24   68  142    14   23   49   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     117     I     117     24   68  142    14   23   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     118     L     118     24   68  142    14   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     119     R     119     24   68  142    14   23   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     120     T     120     24   68  142    14   22   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     121     A     121     24   68  142    14   24   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     122     D     122     24   68  142    14   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     W     123     W     123     24   68  142    14   22   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     F     124     F     124     24   68  142     4   22   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     125     G     125     24   68  142     4   21   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     126     I     126     24   68  142     4   26   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     127     R     127     24   68  142     4   19   47   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     H     128     H     128     24   68  142     3   21   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     129     V     129     24   68  142     3   21   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     W     130     W     130     24   68  142     5   26   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     131     L     131     24   68  142     4   14   39   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     132     G     132      9   68  142     4   14   39   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     133     T     133      9   68  142     3   13   43   69   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     134     G     134      5   68  142     3    5   18   42   66   90  106  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     135     S     135      5   68  142     3    4   11   20   38   90  106  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     136     A     136      5   68  142     3    6   16   51   79   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     137     D     137      5   68  142     8   20   45   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     138     V     138      4   68  142     4    5    8   33   79   92  107  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     F     139     F     139     10   68  142     3    4   19   46   79   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     140     S     140     11   68  142     3    4   30   53   81   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     141     P     141     12   68  142     4   10   26   46   73   92  105  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     K     142     K     142     13   68  142     5   15   37   62   82   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     143     V     143     17   68  142     5   20   42   67   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     144     V     144     17   68  142     5   21   47   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     Q     145     Q     145     17   68  142     5   15   39   65   84   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     146     A     146     17   68  142     5   20   42   68   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     147     S     147     17   68  142     7   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     M     148     M     148     17   68  142     7   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     149     G     149     17   68  142     5   19   48   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     150     A     150     17   68  142     5   23   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     151     L     151     17   68  142     4   12   43   68   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     152     A     152     17   68  142     4    6   43   67   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     153     R     153     17   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     154     V     154     17   68  142    14   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     Q     155     Q     155     17   68  142     8   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     156     P     156     17   68  142     8   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     157     T     157     17   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     158     P     158     17   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     159     L     159     17   68  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     K     160     K     160     15   68  142     6   32   51   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     N     161     N     161     15   68  142     6   14   48   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     162     T     162     15   68  142    10   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     163     V     163     15   68  142     8   23   48   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     164     D     164     13   68  142     8   17   43   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     165     T     165     13   68  142     8   14   40   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     166     L     166     13   68  142     8   21   44   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     167     A     167     13   68  142     8   11   21   51   74   96  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     Y     168     Y     168     13   65  142     8   12   20   42   66   93  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     F     169     F     169     13   65  142     8   12   28   54   80   96  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     170     R     170     13   62  142     8   11   27   48   73   94  107  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     171     R     171     13   32  142     7   11   13   20   39   64   86  100  117  123  131  132  137  139  141  142  142  142  142  142 
LCS_GDT     Q     172     Q     172     13   32  142     3    5   32   53   75   95  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     173     G     173     13   32  142     4   12   20   32   57   78  100  112  121  124  131  132  137  139  141  142  142  142  142  142 
LCS_GDT     I     174     I     174     13   32  142     4   11   23   54   75   95  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     175     P     175      4   26  142     3    8   20   31   51   78   97  112  121  124  131  132  137  139  141  142  142  142  142  142 
LCS_GDT     V     176     V     176      4   26  142     3    4    9   15   32   56   84  102  118  123  128  132  137  139  141  142  142  142  142  142 
LCS_GDT     Y     177     Y     177      4   26  142     4   13   38   60   87   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     178     G     178      4   26  142     5   22   49   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     179     A     179      4   26  142     3   11   31   54   82   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     F     180     F     180      4   26  142     3    4   10   16   39   65   84  101  113  121  126  130  137  139  141  142  142  142  142  142 
LCS_GDT     L     181     L     181      3   26  142     3    3   10   24   47   68   91  103  112  121  125  129  135  138  141  142  142  142  142  142 
LCS_GDT     D     182     D     182      3   24  142     3    3    7   21   39   49   83   97  108  121  125  129  135  138  141  142  142  142  142  142 
LCS_GDT     G     183     G     183      3    6  142     3    3   13   22   35   60   77  102  114  123  127  132  137  139  141  142  142  142  142  142 
LCS_GDT     Q     184     Q     184      4    6  142     4    4   25   56   80   94  107  116  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     185     S     185      4    6  142     4    4   10   37   51   79   97  115  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     186     L     186      4    7  142     4    4    6   11   21   36   83  108  121  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     Y     187     Y     187      4    7  142     4   11   16   21   44   63   76  103  121  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     E     188     E     188      4    7  142     3    4    4    8   10   22   63  110  121  126  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     189     A     189      4    7  142     3    8   38   62   81   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     190     P     190      3    7  142     5   19   43   68   87   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     191     L     191      4    7  142     0    3   13   27   58   78  101  112  121  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     192     P     192      4    7  142     3    3    4   15   49   76   89  107  119  123  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     N     193     N     193      4    8  142     3    3    7   15   50   75   88  107  116  122  129  133  137  139  141  142  142  142  142  142 
LCS_GDT     F     194     F     194      4   12  142     3    5   10   17   33   53   82   97  116  120  127  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     195     T     195      3   12  142     3    4    9   15   19   37   60   86   97  110  122  129  132  136  140  142  142  142  142  142 
LCS_GDT     E     196     E     196      3   12  142     3    5   12   27   50   78   97  112  120  123  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     197     P     197      4   12  142     3    4   10   27   50   77   97  112  120  123  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     198     A     198      4   41  142     3    4    9   36   65   90  107  115  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     199     I     199      5   42  142     3   20   43   67   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     200     L     200      5   42  142     4    8   17   40   71   94  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     201     V     201      5   42  142     7   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     202     L     202      5   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     203     G     203      5   42  142     6   26   49   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     204     S     204      4   42  142     3   10   26   61   84   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     E     205     E     205      4   42  142     3    7   26   60   81   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     206     G     206      4   42  142     3   14   39   69   87   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     207     R     207     12   42  142     3   11   48   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     G     208     G     208     12   42  142     4   25   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     209     I     209     12   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     210     S     210     12   42  142    10   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     P     211     P     211     12   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     E     212     E     212     12   42  142     8   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     213     V     213     12   42  142     7   32   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     214     A     214     12   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     215     A     215     12   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     E     216     E     216     12   42  142    10   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     217     I     217     12   42  142    11   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     218     T     218     12   42  142     7   23   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     D     219     D     219     11   42  142     3   11   29   51   81   96  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     220     R     220      5   42  142     5   25   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     221     L     221      4   42  142    11   19   31   57   81   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     222     T     222      4   42  142     4    7   24   58   83   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     223     I     223      4   42  142     4    5   13   35   63   88  103  116  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     237     L     237     16   42  142     9   25   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     N     238     N     238     16   42  142     4   23   43   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     V     239     V     239     16   42  142    11   16   37   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     240     A     240     16   42  142    12   20   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     241     I     241     16   42  142    12   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     242     A     242     16   42  142    12   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     T     243     T     243     16   42  142    12   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     A     244     A     244     16   42  142    12   32   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     I     245     I     245     16   42  142    12   25   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     L     246     L     246     16   42  142    12   21   46   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     C     247     C     247     16   42  142    12   25   51   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     248     S     248     16   42  142    12   21   50   71   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     E     249     E     249     16   42  142    12   18   36   59   84   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     W     250     W     250     16   42  142    12   18   36   61   87   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     251     R     251     16   42  142    12   21   44   68   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     252     R     252     16   42  142     9   16   26   51   76   94  107  118  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     R     253     R     253     15   42  142     4    5   40   67   83   97  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_GDT     S     254     S     254      4   41  142     6   22   49   70   88   98  108  119  122  127  131  133  137  139  141  142  142  142  142  142 
LCS_AVERAGE  LCS_A:  48.12  (   9.05   35.31  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     32     51     71     88     98    108    119    122    127    131    133    137    139    141    142    142    142    142    142 
GDT PERCENT_CA   9.86  22.54  35.92  50.00  61.97  69.01  76.06  83.80  85.92  89.44  92.25  93.66  96.48  97.89  99.30 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.20   0.69   1.03   1.35   1.57   1.77   1.97   2.27   2.36   2.54   2.70   2.80   2.98   3.08   3.20   3.28   3.28   3.28   3.28   3.28
GDT RMS_ALL_CA   4.36   3.46   3.35   3.31   3.32   3.33   3.31   3.31   3.30   3.29   3.29   3.30   3.28   3.28   3.28   3.28   3.28   3.28   3.28   3.28

#      Molecule1      Molecule2       DISTANCE
LGA    G     100      G     100          2.501
LGA    L     101      L     101          1.433
LGA    T     102      T     102          1.160
LGA    L     103      L     103          3.022
LGA    L     104      L     104          3.655
LGA    L     105      L     105          1.168
LGA    D     106      D     106          1.958
LGA    G     107      G     107          1.102
LGA    V     108      V     108          2.174
LGA    Q     109      Q     109          1.059
LGA    D     110      D     110          0.816
LGA    P     111      P     111          1.105
LGA    G     112      G     112          1.568
LGA    N     113      N     113          1.185
LGA    V     114      V     114          0.885
LGA    G     115      G     115          1.274
LGA    T     116      T     116          1.801
LGA    I     117      I     117          1.619
LGA    L     118      L     118          1.258
LGA    R     119      R     119          1.671
LGA    T     120      T     120          2.202
LGA    A     121      A     121          1.934
LGA    D     122      D     122          1.591
LGA    W     123      W     123          2.435
LGA    F     124      F     124          2.227
LGA    G     125      G     125          2.348
LGA    I     126      I     126          2.084
LGA    R     127      R     127          2.244
LGA    H     128      H     128          1.322
LGA    V     129      V     129          1.287
LGA    W     130      W     130          1.024
LGA    L     131      L     131          2.399
LGA    G     132      G     132          2.333
LGA    T     133      T     133          1.996
LGA    G     134      G     134          3.835
LGA    S     135      S     135          3.755
LGA    A     136      A     136          2.859
LGA    D     137      D     137          2.374
LGA    V     138      V     138          3.879
LGA    F     139      F     139          3.227
LGA    S     140      S     140          3.808
LGA    P     141      P     141          3.991
LGA    K     142      K     142          2.695
LGA    V     143      V     143          2.100
LGA    V     144      V     144          1.795
LGA    Q     145      Q     145          2.347
LGA    A     146      A     146          1.715
LGA    S     147      S     147          0.526
LGA    M     148      M     148          0.971
LGA    G     149      G     149          1.530
LGA    A     150      A     150          1.525
LGA    L     151      L     151          1.964
LGA    A     152      A     152          2.600
LGA    R     153      R     153          1.309
LGA    V     154      V     154          1.241
LGA    Q     155      Q     155          1.096
LGA    P     156      P     156          1.005
LGA    T     157      T     157          0.635
LGA    P     158      P     158          1.163
LGA    L     159      L     159          1.254
LGA    K     160      K     160          2.524
LGA    N     161      N     161          3.400
LGA    T     162      T     162          0.914
LGA    V     163      V     163          0.703
LGA    D     164      D     164          1.499
LGA    T     165      T     165          1.823
LGA    L     166      L     166          1.230
LGA    A     167      A     167          3.144
LGA    Y     168      Y     168          3.951
LGA    F     169      F     169          3.033
LGA    R     170      R     170          3.931
LGA    R     171      R     171          6.268
LGA    Q     172      Q     172          3.635
LGA    G     173      G     173          5.548
LGA    I     174      I     174          3.551
LGA    P     175      P     175          5.653
LGA    V     176      V     176          5.936
LGA    Y     177      Y     177          2.736
LGA    G     178      G     178          1.783
LGA    A     179      A     179          3.556
LGA    F     180      F     180          6.973
LGA    L     181      L     181          7.947
LGA    D     182      D     182          8.186
LGA    G     183      G     183          7.203
LGA    Q     184      Q     184          4.827
LGA    S     185      S     185          4.896
LGA    L     186      L     186          5.367
LGA    Y     187      Y     187          5.940
LGA    E     188      E     188          4.856
LGA    A     189      A     189          3.880
LGA    P     190      P     190          2.823
LGA    L     191      L     191          5.613
LGA    P     192      P     192          6.580
LGA    N     193      N     193          7.169
LGA    F     194      F     194          7.667
LGA    T     195      T     195          9.704
LGA    E     196      E     196          7.113
LGA    P     197      P     197          6.841
LGA    A     198      A     198          5.232
LGA    I     199      I     199          2.350
LGA    L     200      L     200          3.431
LGA    V     201      V     201          0.941
LGA    L     202      L     202          1.297
LGA    G     203      G     203          2.791
LGA    S     204      S     204          3.667
LGA    E     205      E     205          3.841
LGA    G     206      G     206          2.647
LGA    R     207      R     207          3.791
LGA    G     208      G     208          1.676
LGA    I     209      I     209          2.058
LGA    S     210      S     210          2.475
LGA    P     211      P     211          2.069
LGA    E     212      E     212          2.246
LGA    V     213      V     213          2.675
LGA    A     214      A     214          2.548
LGA    A     215      A     215          2.543
LGA    E     216      E     216          2.202
LGA    I     217      I     217          1.711
LGA    T     218      T     218          2.694
LGA    D     219      D     219          3.991
LGA    R     220      R     220          1.401
LGA    L     221      L     221          3.252
LGA    T     222      T     222          3.167
LGA    I     223      I     223          4.335
LGA    L     237      L     237          1.768
LGA    N     238      N     238          1.899
LGA    V     239      V     239          3.027
LGA    A     240      A     240          2.387
LGA    I     241      I     241          2.216
LGA    A     242      A     242          1.509
LGA    T     243      T     243          1.197
LGA    A     244      A     244          1.151
LGA    I     245      I     245          1.189
LGA    L     246      L     246          1.536
LGA    C     247      C     247          1.201
LGA    S     248      S     248          1.895
LGA    E     249      E     249          2.880
LGA    W     250      W     250          2.806
LGA    R     251      R     251          2.626
LGA    R     252      R     252          4.403
LGA    R     253      R     253          3.742
LGA    S     254      S     254          2.455

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    119    2.27    64.085    60.951     5.015

LGA_LOCAL      RMSD =  2.273  Number of atoms =  119  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.374  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  3.280  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.972285 * X  +  -0.232877 * Y  +   0.020728 * Z  +  19.171833
  Y_new =  -0.010397 * X  +  -0.045501 * Y  +  -0.998910 * Z  +   9.054085
  Z_new =   0.233567 * X  +  -0.971441 * Y  +   0.041818 * Z  +  45.179661 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.527775    1.613817  [ DEG:   -87.5351     92.4649 ]
  Theta =  -0.235744   -2.905849  [ DEG:   -13.5071   -166.4929 ]
  Phi   =  -3.130899    0.010693  [ DEG:  -179.3873      0.6127 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0378TS168_1-D2                               
REMARK     2: T0378_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0378TS168_1-D2.T0378_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  119   2.27  60.951     3.28
REMARK  ---------------------------------------------------------- 
MOLECULE T0378TS168_1-D2
PFRMAT TS
TARGET T0378
MODEL 1
PARENT N/A
ATOM    100  CA  GLY   100      19.820  -8.646  48.174  1.00 25.00           C
ATOM    101  CA  LEU   101      20.132  -5.262  46.565  1.00 25.00           C
ATOM    102  CA  THR   102      21.544  -1.698  46.189  1.00 25.00           C
ATOM    103  CA  LEU   103      21.734   0.228  42.963  1.00 25.00           C
ATOM    104  CA  LEU   104      23.872   3.314  43.544  1.00 25.00           C
ATOM    105  CA  LEU   105      26.452   6.113  43.240  1.00 25.00           C
ATOM    106  CA  ASP   106      29.719   7.870  42.793  1.00 25.00           C
ATOM    107  CA  GLY   107      30.945  11.378  42.104  1.00 25.00           C
ATOM    108  CA  VAL   108      27.399  12.672  41.890  1.00 25.00           C
ATOM    109  CA  GLN   109      27.987  15.998  40.073  1.00 25.00           C
ATOM    110  CA  ASP   110      25.081  15.981  37.637  1.00 25.00           C
ATOM    111  CA  PRO   111      21.465  15.407  38.665  1.00 25.00           C
ATOM    112  CA  GLY   112      20.113  13.434  35.674  1.00 25.00           C
ATOM    113  CA  ASN   113      22.470  10.529  36.496  1.00 25.00           C
ATOM    114  CA  VAL   114      21.298  10.577  40.141  1.00 25.00           C
ATOM    115  CA  GLY   115      17.644  10.531  38.994  1.00 25.00           C
ATOM    116  CA  THR   116      18.381   7.564  36.687  1.00 25.00           C
ATOM    117  CA  ILE   117      20.075   5.707  39.576  1.00 25.00           C
ATOM    118  CA  LEU   118      17.046   6.385  41.820  1.00 25.00           C
ATOM    119  CA  ARG   119      14.700   5.072  39.091  1.00 25.00           C
ATOM    120  CA  THR   120      16.839   1.916  38.736  1.00 25.00           C
ATOM    121  CA  ALA   121      16.739   1.390  42.527  1.00 25.00           C
ATOM    122  CA  ASP   122      12.930   1.795  42.507  1.00 25.00           C
ATOM    123  CA  TRP   123      12.650  -0.754  39.662  1.00 25.00           C
ATOM    124  CA  PHE   124      15.471  -3.057  40.554  1.00 25.00           C
ATOM    125  CA  GLY   125      13.647  -4.175  43.640  1.00 25.00           C
ATOM    126  CA  ILE   126      16.067  -2.270  45.869  1.00 25.00           C
ATOM    127  CA  ARG   127      15.088  -1.494  49.458  1.00 25.00           C
ATOM    128  CA  HIS   128      17.433   1.499  49.165  1.00 25.00           C
ATOM    129  CA  VAL   129      19.820   3.804  47.423  1.00 25.00           C
ATOM    130  CA  TRP   130      23.223   5.014  48.584  1.00 25.00           C
ATOM    131  CA  LEU   131      23.543   8.416  46.828  1.00 25.00           C
ATOM    132  CA  GLY   132      27.330   8.745  47.417  1.00 25.00           C
ATOM    133  CA  THR   133      30.472  10.702  48.285  1.00 25.00           C
ATOM    134  CA  GLY   134      29.294  14.171  49.298  1.00 25.00           C
ATOM    135  CA  SER   135      30.576  15.305  45.934  1.00 25.00           C
ATOM    136  CA  ALA   136      26.972  16.311  45.300  1.00 25.00           C
ATOM    137  CA  ASP   137      23.305  15.902  44.379  1.00 25.00           C
ATOM    138  CA  VAL   138      22.718  13.633  47.358  1.00 25.00           C
ATOM    139  CA  PHE   139      18.998  14.339  47.139  1.00 25.00           C
ATOM    140  CA  SER   140      18.967  17.847  48.719  1.00 25.00           C
ATOM    141  CA  PRO   141      18.155  19.253  45.280  1.00 25.00           C
ATOM    142  CA  LYS   142      18.927  18.583  41.589  1.00 25.00           C
ATOM    143  CA  VAL   143      18.484  14.822  42.154  1.00 25.00           C
ATOM    144  CA  VAL   144      15.129  15.452  43.890  1.00 25.00           C
ATOM    145  CA  GLN   145      14.000  17.650  40.962  1.00 25.00           C
ATOM    146  CA  ALA   146      15.011  14.910  38.485  1.00 25.00           C
ATOM    147  CA  SER   147      13.051  12.319  40.513  1.00 25.00           C
ATOM    148  CA  MET   148       9.592  11.049  39.526  1.00 25.00           C
ATOM    149  CA  GLY   149       9.313   8.704  42.482  1.00 25.00           C
ATOM    150  CA  ALA   150      12.438   6.689  43.408  1.00 25.00           C
ATOM    151  CA  LEU   151      13.852   9.142  45.986  1.00 25.00           C
ATOM    152  CA  ALA   152      10.883   8.454  48.305  1.00 25.00           C
ATOM    153  CA  ARG   153      10.330   4.693  48.441  1.00 25.00           C
ATOM    154  CA  VAL   154      14.116   4.636  48.194  1.00 25.00           C
ATOM    155  CA  GLN   155      16.553   6.279  50.507  1.00 25.00           C
ATOM    156  CA  PRO   156      19.282   8.711  49.508  1.00 25.00           C
ATOM    157  CA  THR   157      22.008   8.499  52.100  1.00 25.00           C
ATOM    158  CA  PRO   158      25.431  10.294  52.014  1.00 25.00           C
ATOM    159  CA  LEU   159      28.570   8.572  53.201  1.00 25.00           C
ATOM    160  CA  LYS   160      31.348  10.860  54.249  1.00 25.00           C
ATOM    161  CA  ASN   161      34.472   9.366  52.570  1.00 25.00           C
ATOM    162  CA  THR   162      32.842   6.123  51.384  1.00 25.00           C
ATOM    163  CA  VAL   163      35.232   3.678  53.110  1.00 25.00           C
ATOM    164  CA  ASP   164      33.442   4.248  56.448  1.00 25.00           C
ATOM    165  CA  THR   165      30.059   3.609  54.770  1.00 25.00           C
ATOM    166  CA  LEU   166      31.408   0.376  53.224  1.00 25.00           C
ATOM    167  CA  ALA   167      32.707  -0.748  56.647  1.00 25.00           C
ATOM    168  CA  TYR   168      29.291  -0.010  58.213  1.00 25.00           C
ATOM    169  CA  PHE   169      27.563  -2.028  55.454  1.00 25.00           C
ATOM    170  CA  ARG   170      29.964  -4.952  56.054  1.00 25.00           C
ATOM    171  CA  ARG   171      29.243  -4.803  59.813  1.00 25.00           C
ATOM    172  CA  GLN   172      27.546  -8.227  59.373  1.00 25.00           C
ATOM    173  CA  GLY   173      26.058  -8.076  55.923  1.00 25.00           C
ATOM    174  CA  ILE   174      26.001  -5.944  52.829  1.00 25.00           C
ATOM    175  CA  PRO   175      24.710  -6.629  49.274  1.00 25.00           C
ATOM    176  CA  VAL   176      25.339  -5.170  45.808  1.00 25.00           C
ATOM    177  CA  TYR   177      28.285  -4.163  43.620  1.00 25.00           C
ATOM    178  CA  GLY   178      30.853  -2.938  41.119  1.00 25.00           C
ATOM    179  CA  ALA   179      28.512  -1.663  38.397  1.00 25.00           C
ATOM    180  CA  PHE   180      28.605  -1.819  34.641  1.00 25.00           C
ATOM    181  CA  LEU   181      29.898  -4.368  32.217  1.00 25.00           C
ATOM    182  CA  ASP   182      32.128  -6.397  29.908  1.00 25.00           C
ATOM    183  CA  GLY   183      35.606  -6.318  28.268  1.00 25.00           C
ATOM    184  CA  GLN   184      37.182  -6.242  31.712  1.00 25.00           C
ATOM    185  CA  SER   185      36.074  -7.520  35.130  1.00 25.00           C
ATOM    186  CA  LEU   186      34.138 -10.708  34.399  1.00 25.00           C
ATOM    187  CA  TYR   187      31.153  -9.136  36.158  1.00 25.00           C
ATOM    188  CA  GLU   188      28.037  -9.722  34.156  1.00 25.00           C
ATOM    189  CA  ALA   189      28.630 -13.427  33.385  1.00 25.00           C
ATOM    190  CA  PRO   190      29.643 -14.046  37.026  1.00 25.00           C
ATOM    191  CA  LEU   191      31.143 -13.907  40.525  1.00 25.00           C
ATOM    192  CA  PRO   192      28.772 -16.397  42.257  1.00 25.00           C
ATOM    193  CA  ASN   193      25.752 -15.026  40.484  1.00 25.00           C
ATOM    194  CA  PHE   194      25.367 -11.411  41.537  1.00 25.00           C
ATOM    195  CA  THR   195      25.910 -12.755  45.050  1.00 25.00           C
ATOM    196  CA  GLU   196      27.362 -11.777  48.400  1.00 25.00           C
ATOM    197  CA  PRO   197      29.339  -8.640  48.835  1.00 25.00           C
ATOM    198  CA  ALA   198      29.919  -4.956  49.420  1.00 25.00           C
ATOM    199  CA  ILE   199      27.525  -2.019  49.079  1.00 25.00           C
ATOM    200  CA  LEU   200      27.287   0.473  46.185  1.00 25.00           C
ATOM    201  CA  VAL   201      29.020   1.646  42.960  1.00 25.00           C
ATOM    202  CA  LEU   202      28.460   3.216  39.541  1.00 25.00           C
ATOM    203  CA  GLY   203      29.633   6.481  37.976  1.00 25.00           C
ATOM    204  CA  SER   204      27.974   9.792  37.133  1.00 25.00           C
ATOM    205  CA  GLU   205      30.054  11.463  34.393  1.00 25.00           C
ATOM    206  CA  GLY   206      33.247  13.346  35.098  1.00 25.00           C
ATOM    207  CA  ARG   207      35.103  10.375  33.642  1.00 25.00           C
ATOM    208  CA  GLY   208      35.709   7.830  36.410  1.00 25.00           C
ATOM    209  CA  ILE   209      34.866   5.410  39.271  1.00 25.00           C
ATOM    210  CA  SER   210      38.043   6.715  40.814  1.00 25.00           C
ATOM    211  CA  PRO   211      41.173   5.034  42.161  1.00 25.00           C
ATOM    212  CA  GLU   212      40.103   4.364  45.776  1.00 25.00           C
ATOM    213  CA  VAL   213      36.659   3.205  44.567  1.00 25.00           C
ATOM    214  CA  ALA   214      38.311   0.872  42.019  1.00 25.00           C
ATOM    215  CA  ALA   215      40.568  -0.564  44.760  1.00 25.00           C
ATOM    216  CA  GLU   216      37.517  -1.140  47.003  1.00 25.00           C
ATOM    217  CA  ILE   217      35.292  -3.054  44.526  1.00 25.00           C
ATOM    218  CA  THR   218      37.354  -6.243  44.319  1.00 25.00           C
ATOM    219  CA  ASP   219      37.817  -7.010  40.598  1.00 25.00           C
ATOM    220  CA  ARG   220      35.516  -4.402  39.055  1.00 25.00           C
ATOM    221  CA  LEU   221      33.250  -2.508  36.637  1.00 25.00           C
ATOM    222  CA  THR   222      34.544  -1.663  33.209  1.00 25.00           C
ATOM    223  CA  ILE   223      32.246  -0.008  30.701  1.00 25.00           C
ATOM    237  CA  LEU   237      28.607   5.931  28.923  1.00 25.00           C
ATOM    238  CA  ASN   238      27.408   9.203  30.480  1.00 25.00           C
ATOM    239  CA  VAL   239      25.005   7.275  32.751  1.00 25.00           C
ATOM    240  CA  ALA   240      21.316   6.431  33.340  1.00 25.00           C
ATOM    241  CA  ILE   241      21.566   3.512  30.871  1.00 25.00           C
ATOM    242  CA  ALA   242      24.698   2.232  32.664  1.00 25.00           C
ATOM    243  CA  THR   243      22.890   2.454  36.033  1.00 25.00           C
ATOM    244  CA  ALA   244      19.916   0.519  34.593  1.00 25.00           C
ATOM    245  CA  ILE   245      22.286  -2.172  33.247  1.00 25.00           C
ATOM    246  CA  LEU   246      23.968  -2.441  36.678  1.00 25.00           C
ATOM    247  CA  CYS   247      20.543  -2.797  38.356  1.00 25.00           C
ATOM    248  CA  SER   248      19.582  -5.543  35.866  1.00 25.00           C
ATOM    249  CA  GLU   249      22.870  -7.373  36.576  1.00 25.00           C
ATOM    250  CA  TRP   250      22.220  -7.131  40.343  1.00 25.00           C
ATOM    251  CA  ARG   251      18.687  -8.524  39.848  1.00 25.00           C
ATOM    252  CA  ARG   252      20.094 -11.422  37.776  1.00 25.00           C
ATOM    253  CA  ARG   253      18.222 -13.599  40.330  1.00 25.00           C
ATOM    254  CA  SER   254      14.725 -12.479  41.169  1.00 25.00           C
TER
END
