
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0378TS168_4-D2
# Molecule2: number of CA atoms  142 ( 1079),  selected  142 , name T0378_D2.pdb
# PARAMETERS: T0378TS168_4-D2.T0378_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   142       100 - 254         3.33     3.33
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    60       103 - 162         2.00     3.66
  LONGEST_CONTINUOUS_SEGMENT:    60       104 - 163         2.00     3.75
  LCS_AVERAGE:     29.18

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26       105 - 130         0.97     3.60
  LCS_AVERAGE:      8.93

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     G     100     G     100      5   59  142     6   23   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     101     L     101      5   59  142     6   23   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     102     T     102      9   59  142     3   13   30   56   80   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     103     L     103      9   60  142     3   11   22   45   69   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     104     L     104      9   60  142     3   11   23   47   75   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     105     L     105     26   60  142     7   27   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     106     D     106     26   60  142     7   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     107     G     107     26   60  142     9   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     108     V     108     26   60  142     8   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Q     109     Q     109     26   60  142    15   23   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     110     D     110     26   60  142    14   27   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     111     P     111     26   60  142    13   25   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     112     G     112     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     N     113     N     113     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     114     V     114     26   60  142    13   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     115     G     115     26   60  142    13   27   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     116     T     116     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     117     I     117     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     118     L     118     26   60  142    13   21   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     119     R     119     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     120     T     120     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     121     A     121     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     122     D     122     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     W     123     W     123     26   60  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     F     124     F     124     26   60  142     4   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     125     G     125     26   60  142     3   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     126     I     126     26   60  142     9   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     127     R     127     26   60  142    11   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     H     128     H     128     26   60  142     7   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     129     V     129     26   60  142    11   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     W     130     W     130     26   60  142    11   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     131     L     131     25   60  142     4   20   49   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     132     G     132     15   60  142     4   18   47   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     133     T     133     15   60  142     6   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     134     G     134      4   60  142     3   11   38   62   78   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     135     S     135      5   60  142     4    5    6    9   55   86  100  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     136     A     136      5   60  142     4   13   43   65   78   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     137     D     137      5   60  142     4   10   35   60   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     138     V     138      5   60  142     4    7   17   37   73   86  100  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     F     139     F     139      5   60  142     4   10   23   47   76   92  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     140     S     140      9   60  142     4   13   35   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     141     P     141      9   60  142     4   12   33   67   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     K     142     K     142      9   60  142     4   10   31   67   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     143     V     143      9   60  142     5   19   50   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     144     V     144      9   60  142     5   11   29   59   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Q     145     Q     145      9   60  142     5   10   25   51   76   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     146     A     146      9   60  142     5   12   31   57   83   94  105  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     147     S     147     10   60  142     5   18   47   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     M     148     M     148     10   60  142     4   19   49   67   83   94  105  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     149     G     149     10   60  142    11   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     150     A     150     10   60  142     8   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     151     L     151     10   60  142     4   24   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     152     A     152     10   60  142     3    7   35   61   76   92  103  112  119  126  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     153     R     153     10   60  142     5   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     154     V     154     10   60  142     7   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Q     155     Q     155     10   60  142     3    8   20   55   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     156     P     156     10   60  142     4   11   22   55   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     157     T     157      3   60  142     4   13   38   67   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     158     P     158      3   60  142     6   27   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     159     L     159      3   60  142     4   12   32   54   71   92  102  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     K     160     K     160      6   60  142     3   20   39   60   83   92  104  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     N     161     N     161     13   60  142     3   14   47   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     162     T     162     13   60  142     8   26   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     163     V     163     13   60  142     8   10   15   33   70   92  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     164     D     164     13   17  142     8   10   19   33   53   75  103  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     165     T     165     13   17  142     8   10   22   42   71   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     166     L     166     13   17  142     8   14   40   69   81   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     167     A     167     13   17  142     8   10   13   29   45   69   91  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Y     168     Y     168     13   17  142     8   10   12   29   46   63   86  110  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     F     169     F     169     13   17  142     8   13   26   51   75   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     170     R     170     13   17  142     7   10   21   47   70   90  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     171     R     171     13   17  142     7   10   12   19   45   62   77   95  113  121  130  134  136  140  142  142  142  142  142  142 
LCS_GDT     Q     172     Q     172     13   17  142     3   10   23   36   50   72   97  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     173     G     173     13   17  142     3   10   23   37   54   78  103  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     174     I     174      7   17  142     3   13   23   37   55   85  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     175     P     175      7   17  142     3   13   23   37   50   75  100  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     176     V     176      7   16  142     3    6    8   30   45   59   78  104  120  126  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Y     177     Y     177      7   16  142     3   13   23   37   60   87  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     178     G     178      6   16  142     3   12   23   37   61   87  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     179     A     179      6   16  142     3   13   23   45   77   93  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     F     180     F     180      5   13  142     3    6   14   26   36   54   86  104  119  124  129  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     181     L     181      5   13  142     4    5    8   27   36   54   86  103  118  123  127  131  136  141  142  142  142  142  142  142 
LCS_GDT     D     182     D     182      4   12  142     4    5   14   20   62   73   92  107  119  124  129  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     183     G     183      4    8  142     4   23   39   59   71   91  102  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Q     184     Q     184      4    8  142     4    8   16   42   64   80   93  109  118  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     185     S     185      3    8  142     3    4   15   34   72   88   98  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     186     L     186      4    8  142     3    3    8   14   34   84   97  107  118  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     Y     187     Y     187      4    6  142     3    3    4   33   41   70   89  106  118  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     188     E     188      4    6  142     3    5    6   14   40   76   97  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     189     A     189      4    6  142     3    3    4   49   69   84   95  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     190     P     190      3    8  142    15   22   39   57   77   92  105  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     191     L     191      4    8  142     3    8   21   52   69   86  102  112  119  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     192     P     192      4    8  142     3    4    8   11   41   64   88  102  111  121  130  134  139  141  142  142  142  142  142  142 
LCS_GDT     N     193     N     193      4   10  142     3    9   12   24   48   71   88  102  111  121  130  134  139  141  142  142  142  142  142  142 
LCS_GDT     F     194     F     194      4   12  142     3    8   17   27   43   71   88  102  113  121  129  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     195     T     195      6   12  142     3    8   17   27   46   71   88  102  113  121  128  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     196     E     196      6   12  142     3    4   23   30   48   69   86  102  113  121  128  133  139  141  142  142  142  142  142  142 
LCS_GDT     P     197     P     197      6   12  142     2   18   24   31   48   64   86   99  113  121  128  133  139  141  142  142  142  142  142  142 
LCS_GDT     A     198     A     198      6   12  142     3   11   34   54   75   88  101  112  118  126  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     199     I     199      6   19  142     3   12   36   60   83   94  105  112  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     200     L     200      6   19  142     3    5   38   65   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     201     V     201      5   19  142     3   20   47   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     202     L     202      5   19  142     5   20   47   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     203     G     203      5   39  142     3    5   38   61   78   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     204     S     204      3   39  142     3   21   50   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     205     E     205      4   39  142     3   23   47   66   80   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     206     G     206     12   39  142     3   21   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     207     R     207     12   39  142     4   23   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     G     208     G     208     12   39  142     4   13   44   65   80   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     209     I     209     12   39  142     9   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     210     S     210     12   39  142     6   12   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     P     211     P     211     12   39  142     6   22   49   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     212     E     212     12   39  142     6    9   44   65   76   92  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     213     V     213     12   39  142     6   26   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     214     A     214     12   39  142     6   15   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     215     A     215     12   39  142     6   10   44   65   80   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     216     E     216     12   39  142     5   28   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     217     I     217     12   39  142     5   12   36   67   81   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     218     T     218      5   39  142    11   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     D     219     D     219      5   39  142     7   25   47   66   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     220     R     220      5   39  142     3    5   45   67   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     221     L     221      5   39  142     9   31   52   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     222     T     222      5   39  142     3    7   28   57   74   92  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     223     I     223      5   39  142     3    5    9   21   44   71   90  106  119  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     237     L     237     18   39  142    15   23   43   64   80   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     N     238     N     238     18   39  142    15   25   47   67   81   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     V     239     V     239     18   39  142    15   23   50   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     240     A     240     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     241     I     241     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     242     A     242     18   39  142    15   25   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     T     243     T     243     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     A     244     A     244     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     I     245     I     245     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     L     246     L     246     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     C     247     C     247     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     248     S     248     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     E     249     E     249     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     W     250     W     250     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     251     R     251     18   39  142    15   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     252     R     252     18   39  142    13   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     R     253     R     253     18   39  142     6   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_GDT     S     254     S     254     18   39  142     6   31   54   69   83   94  105  113  121  128  131  134  139  141  142  142  142  142  142  142 
LCS_AVERAGE  LCS_A:  46.04  (   8.93   29.18  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     31     54     69     83     94    105    113    121    128    131    134    139    141    142    142    142    142    142    142 
GDT PERCENT_CA  10.56  21.83  38.03  48.59  58.45  66.20  73.94  79.58  85.21  90.14  92.25  94.37  97.89  99.30 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.34   0.73   1.07   1.30   1.61   1.80   2.05   2.39   2.56   2.77   2.83   2.95   3.18   3.27   3.33   3.33   3.33   3.33   3.33   3.33
GDT RMS_ALL_CA   6.44   3.62   3.51   3.44   3.45   3.41   3.37   3.39   3.38   3.35   3.34   3.35   3.33   3.33   3.33   3.33   3.33   3.33   3.33   3.33

#      Molecule1      Molecule2       DISTANCE
LGA    G     100      G     100          1.630
LGA    L     101      L     101          1.032
LGA    T     102      T     102          2.083
LGA    L     103      L     103          2.960
LGA    L     104      L     104          2.417
LGA    L     105      L     105          0.595
LGA    D     106      D     106          1.277
LGA    G     107      G     107          0.215
LGA    V     108      V     108          1.011
LGA    Q     109      Q     109          1.326
LGA    D     110      D     110          0.582
LGA    P     111      P     111          1.927
LGA    G     112      G     112          2.209
LGA    N     113      N     113          1.035
LGA    V     114      V     114          1.765
LGA    G     115      G     115          2.643
LGA    T     116      T     116          2.024
LGA    I     117      I     117          1.513
LGA    L     118      L     118          2.888
LGA    R     119      R     119          3.024
LGA    T     120      T     120          1.917
LGA    A     121      A     121          2.389
LGA    D     122      D     122          3.470
LGA    W     123      W     123          3.174
LGA    F     124      F     124          3.182
LGA    G     125      G     125          3.890
LGA    I     126      I     126          2.642
LGA    R     127      R     127          2.656
LGA    H     128      H     128          2.219
LGA    V     129      V     129          1.974
LGA    W     130      W     130          2.054
LGA    L     131      L     131          1.369
LGA    G     132      G     132          1.231
LGA    T     133      T     133          0.635
LGA    G     134      G     134          2.635
LGA    S     135      S     135          3.767
LGA    A     136      A     136          3.034
LGA    D     137      D     137          2.328
LGA    V     138      V     138          3.608
LGA    F     139      F     139          2.960
LGA    S     140      S     140          1.971
LGA    P     141      P     141          2.902
LGA    K     142      K     142          3.518
LGA    V     143      V     143          2.905
LGA    V     144      V     144          2.696
LGA    Q     145      Q     145          3.895
LGA    A     146      A     146          4.202
LGA    S     147      S     147          3.091
LGA    M     148      M     148          4.768
LGA    G     149      G     149          3.882
LGA    A     150      A     150          3.714
LGA    L     151      L     151          2.360
LGA    A     152      A     152          4.985
LGA    R     153      R     153          3.573
LGA    V     154      V     154          3.024
LGA    Q     155      Q     155          2.460
LGA    P     156      P     156          2.392
LGA    T     157      T     157          1.489
LGA    P     158      P     158          0.770
LGA    L     159      L     159          3.945
LGA    K     160      K     160          4.097
LGA    N     161      N     161          1.328
LGA    T     162      T     162          1.009
LGA    V     163      V     163          2.781
LGA    D     164      D     164          3.894
LGA    T     165      T     165          2.509
LGA    L     166      L     166          1.280
LGA    A     167      A     167          4.363
LGA    Y     168      Y     168          4.745
LGA    F     169      F     169          1.922
LGA    R     170      R     170          3.165
LGA    R     171      R     171          6.189
LGA    Q     172      Q     172          4.191
LGA    G     173      G     173          3.640
LGA    I     174      I     174          3.371
LGA    P     175      P     175          3.967
LGA    V     176      V     176          5.061
LGA    Y     177      Y     177          3.333
LGA    G     178      G     178          3.620
LGA    A     179      A     179          2.792
LGA    F     180      F     180          5.883
LGA    L     181      L     181          6.881
LGA    D     182      D     182          5.642
LGA    G     183      G     183          4.854
LGA    Q     184      Q     184          6.246
LGA    S     185      S     185          5.232
LGA    L     186      L     186          5.919
LGA    Y     187      Y     187          5.672
LGA    E     188      E     188          3.936
LGA    A     189      A     189          4.219
LGA    P     190      P     190          4.697
LGA    L     191      L     191          5.877
LGA    P     192      P     192          8.330
LGA    N     193      N     193          8.144
LGA    F     194      F     194          8.184
LGA    T     195      T     195          8.760
LGA    E     196      E     196          8.436
LGA    P     197      P     197          8.615
LGA    A     198      A     198          5.982
LGA    I     199      I     199          4.322
LGA    L     200      L     200          3.388
LGA    V     201      V     201          1.988
LGA    L     202      L     202          1.828
LGA    G     203      G     203          3.246
LGA    S     204      S     204          1.966
LGA    E     205      E     205          2.609
LGA    G     206      G     206          1.359
LGA    R     207      R     207          1.202
LGA    G     208      G     208          2.530
LGA    I     209      I     209          0.803
LGA    S     210      S     210          1.573
LGA    P     211      P     211          2.158
LGA    E     212      E     212          3.308
LGA    V     213      V     213          2.002
LGA    A     214      A     214          1.093
LGA    A     215      A     215          2.522
LGA    E     216      E     216          2.069
LGA    I     217      I     217          2.000
LGA    T     218      T     218          2.332
LGA    D     219      D     219          3.814
LGA    R     220      R     220          2.455
LGA    L     221      L     221          2.214
LGA    T     222      T     222          3.881
LGA    I     223      I     223          5.223
LGA    L     237      L     237          3.170
LGA    N     238      N     238          2.468
LGA    V     239      V     239          1.273
LGA    A     240      A     240          0.835
LGA    I     241      I     241          1.826
LGA    A     242      A     242          0.899
LGA    T     243      T     243          1.206
LGA    A     244      A     244          2.026
LGA    I     245      I     245          1.159
LGA    L     246      L     246          0.896
LGA    C     247      C     247          2.098
LGA    S     248      S     248          2.137
LGA    E     249      E     249          1.572
LGA    W     250      W     250          2.501
LGA    R     251      R     251          3.154
LGA    R     252      R     252          3.159
LGA    R     253      R     253          2.966
LGA    S     254      S     254          3.901

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    113    2.39    62.500    58.793     4.547

LGA_LOCAL      RMSD =  2.385  Number of atoms =  113  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.547  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  3.328  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.995861 * X  +  -0.044196 * Y  +  -0.079417 * Z  +  19.467215
  Y_new =   0.087422 * X  +  -0.226824 * Y  +  -0.970004 * Z  +   8.181320
  Z_new =   0.024857 * X  +  -0.972932 * Y  +   0.229749 * Z  +  45.593918 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.338903    1.802689  [ DEG:   -76.7135    103.2865 ]
  Theta =  -0.024859   -3.116733  [ DEG:    -1.4243   -178.5757 ]
  Phi   =   3.054032   -0.087561  [ DEG:   174.9831     -5.0169 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0378TS168_4-D2                               
REMARK     2: T0378_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0378TS168_4-D2.T0378_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  113   2.39  58.793     3.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0378TS168_4-D2
PFRMAT TS
TARGET T0378
MODEL 4
PARENT N/A
ATOM    100  CA  GLY   100      20.326  -7.193  49.165  1.00 25.00           C
ATOM    101  CA  LEU   101      21.785  -5.562  46.018  1.00 25.00           C
ATOM    102  CA  THR   102      22.264  -1.962  45.005  1.00 25.00           C
ATOM    103  CA  LEU   103      23.420   0.198  42.118  1.00 25.00           C
ATOM    104  CA  LEU   104      25.336   2.931  43.977  1.00 25.00           C
ATOM    105  CA  LEU   105      27.170   6.249  43.392  1.00 25.00           C
ATOM    106  CA  ASP   106      30.728   7.624  43.036  1.00 25.00           C
ATOM    107  CA  GLY   107      31.275  11.390  42.939  1.00 25.00           C
ATOM    108  CA  VAL   108      27.825  11.598  41.312  1.00 25.00           C
ATOM    109  CA  GLN   109      29.290  14.834  39.796  1.00 25.00           C
ATOM    110  CA  ASP   110      26.148  15.128  37.645  1.00 25.00           C
ATOM    111  CA  PRO   111      23.051  14.820  39.866  1.00 25.00           C
ATOM    112  CA  GLY   112      20.186  13.937  37.482  1.00 25.00           C
ATOM    113  CA  ASN   113      22.092  10.833  36.301  1.00 25.00           C
ATOM    114  CA  VAL   114      22.681   9.780  39.935  1.00 25.00           C
ATOM    115  CA  GLY   115      18.955  10.237  40.696  1.00 25.00           C
ATOM    116  CA  THR   116      18.045   8.118  37.639  1.00 25.00           C
ATOM    117  CA  ILE   117      20.471   5.383  38.781  1.00 25.00           C
ATOM    118  CA  LEU   118      18.923   5.439  42.283  1.00 25.00           C
ATOM    119  CA  ARG   119      15.420   5.140  40.766  1.00 25.00           C
ATOM    120  CA  THR   120      16.569   2.176  38.632  1.00 25.00           C
ATOM    121  CA  ALA   121      18.058   0.490  41.732  1.00 25.00           C
ATOM    122  CA  ASP   122      14.776   1.027  43.630  1.00 25.00           C
ATOM    123  CA  TRP   123      12.811  -0.488  40.712  1.00 25.00           C
ATOM    124  CA  PHE   124      14.588  -3.678  41.778  1.00 25.00           C
ATOM    125  CA  GLY   125      14.169  -4.610  45.441  1.00 25.00           C
ATOM    126  CA  ILE   126      17.506  -2.875  45.749  1.00 25.00           C
ATOM    127  CA  ARG   127      16.933  -1.742  49.287  1.00 25.00           C
ATOM    128  CA  HIS   128      20.126   0.413  49.303  1.00 25.00           C
ATOM    129  CA  VAL   129      22.229   3.184  47.873  1.00 25.00           C
ATOM    130  CA  TRP   130      25.242   4.498  49.780  1.00 25.00           C
ATOM    131  CA  LEU   131      25.216   7.661  47.641  1.00 25.00           C
ATOM    132  CA  GLY   132      28.460   9.517  47.617  1.00 25.00           C
ATOM    133  CA  THR   133      31.410  11.839  48.052  1.00 25.00           C
ATOM    134  CA  GLY   134      32.886  15.294  47.622  1.00 25.00           C
ATOM    135  CA  SER   135      29.989  16.218  45.286  1.00 25.00           C
ATOM    136  CA  ALA   136      26.605  14.607  45.869  1.00 25.00           C
ATOM    137  CA  ASP   137      23.754  16.816  44.661  1.00 25.00           C
ATOM    138  CA  VAL   138      21.318  16.669  47.508  1.00 25.00           C
ATOM    139  CA  PHE   139      18.394  15.950  45.262  1.00 25.00           C
ATOM    140  CA  SER   140      16.893  19.201  43.983  1.00 25.00           C
ATOM    141  CA  PRO   141      14.159  18.990  41.351  1.00 25.00           C
ATOM    142  CA  LYS   142      16.261  16.490  39.353  1.00 25.00           C
ATOM    143  CA  VAL   143      15.647  13.808  42.017  1.00 25.00           C
ATOM    144  CA  VAL   144      11.884  14.510  41.890  1.00 25.00           C
ATOM    145  CA  GLN   145      11.932  14.219  38.072  1.00 25.00           C
ATOM    146  CA  ALA   146      13.806  10.888  38.325  1.00 25.00           C
ATOM    147  CA  SER   147      11.234   9.606  40.858  1.00 25.00           C
ATOM    148  CA  MET   148       8.486   6.999  41.306  1.00 25.00           C
ATOM    149  CA  GLY   149       8.665   7.330  45.034  1.00 25.00           C
ATOM    150  CA  ALA   150      11.704   5.100  45.474  1.00 25.00           C
ATOM    151  CA  LEU   151      13.676   7.874  47.229  1.00 25.00           C
ATOM    152  CA  ALA   152      12.310   6.734  50.620  1.00 25.00           C
ATOM    153  CA  ARG   153      12.029   2.937  50.112  1.00 25.00           C
ATOM    154  CA  VAL   154      15.722   3.586  49.247  1.00 25.00           C
ATOM    155  CA  GLN   155      17.940   6.600  49.923  1.00 25.00           C
ATOM    156  CA  PRO   156      20.464   8.961  48.343  1.00 25.00           C
ATOM    157  CA  THR   157      21.440   9.509  51.948  1.00 25.00           C
ATOM    158  CA  PRO   158      25.083  10.568  51.843  1.00 25.00           C
ATOM    159  CA  LEU   159      28.276  12.592  52.258  1.00 25.00           C
ATOM    160  CA  LYS   160      31.927  12.308  53.233  1.00 25.00           C
ATOM    161  CA  ASN   161      32.447   8.621  53.961  1.00 25.00           C
ATOM    162  CA  THR   162      32.946   5.396  51.922  1.00 25.00           C
ATOM    163  CA  VAL   163      34.344   3.903  55.161  1.00 25.00           C
ATOM    164  CA  ASP   164      30.811   3.713  56.627  1.00 25.00           C
ATOM    165  CA  THR   165      29.560   1.970  53.453  1.00 25.00           C
ATOM    166  CA  LEU   166      32.448  -0.537  53.663  1.00 25.00           C
ATOM    167  CA  ALA   167      31.615  -1.225  57.338  1.00 25.00           C
ATOM    168  CA  TYR   168      27.938  -1.781  56.425  1.00 25.00           C
ATOM    169  CA  PHE   169      28.968  -4.201  53.643  1.00 25.00           C
ATOM    170  CA  ARG   170      31.209  -6.107  56.095  1.00 25.00           C
ATOM    171  CA  ARG   171      28.320  -6.327  58.600  1.00 25.00           C
ATOM    172  CA  GLN   172      26.546  -9.412  57.259  1.00 25.00           C
ATOM    173  CA  GLY   173      27.198 -11.219  53.964  1.00 25.00           C
ATOM    174  CA  ILE   174      25.235  -8.252  52.678  1.00 25.00           C
ATOM    175  CA  PRO   175      26.255  -7.313  49.107  1.00 25.00           C
ATOM    176  CA  VAL   176      26.240  -3.808  47.631  1.00 25.00           C
ATOM    177  CA  TYR   177      27.727  -4.788  44.281  1.00 25.00           C
ATOM    178  CA  GLY   178      28.918  -3.181  41.119  1.00 25.00           C
ATOM    179  CA  ALA   179      29.284  -1.813  37.605  1.00 25.00           C
ATOM    180  CA  PHE   180      30.080  -2.199  33.943  1.00 25.00           C
ATOM    181  CA  LEU   181      31.354  -4.327  30.978  1.00 25.00           C
ATOM    182  CA  ASP   182      34.862  -4.865  29.701  1.00 25.00           C
ATOM    183  CA  GLY   183      38.289  -4.067  30.988  1.00 25.00           C
ATOM    184  CA  GLN   184      40.130  -5.510  34.045  1.00 25.00           C
ATOM    185  CA  SER   185      37.242  -8.005  34.124  1.00 25.00           C
ATOM    186  CA  LEU   186      34.669 -10.813  34.662  1.00 25.00           C
ATOM    187  CA  TYR   187      31.611  -8.644  34.948  1.00 25.00           C
ATOM    188  CA  GLU   188      28.853 -10.267  32.979  1.00 25.00           C
ATOM    189  CA  ALA   189      27.875 -13.928  33.532  1.00 25.00           C
ATOM    190  CA  PRO   190      31.057 -14.494  35.586  1.00 25.00           C
ATOM    191  CA  LEU   191      31.324 -13.284  39.225  1.00 25.00           C
ATOM    192  CA  PRO   192      30.010 -16.666  40.398  1.00 25.00           C
ATOM    193  CA  ASN   193      26.364 -15.672  39.948  1.00 25.00           C
ATOM    194  CA  PHE   194      25.574 -12.389  41.663  1.00 25.00           C
ATOM    195  CA  THR   195      24.903 -12.872  45.382  1.00 25.00           C
ATOM    196  CA  GLU   196      28.359 -11.546  46.050  1.00 25.00           C
ATOM    197  CA  PRO   197      30.690  -8.830  47.162  1.00 25.00           C
ATOM    198  CA  ALA   198      31.023  -5.203  48.231  1.00 25.00           C
ATOM    199  CA  ILE   199      30.453  -1.402  48.395  1.00 25.00           C
ATOM    200  CA  LEU   200      29.722   0.166  45.025  1.00 25.00           C
ATOM    201  CA  VAL   201      30.292   1.838  41.646  1.00 25.00           C
ATOM    202  CA  LEU   202      29.624   4.280  38.811  1.00 25.00           C
ATOM    203  CA  GLY   203      32.104   6.098  36.571  1.00 25.00           C
ATOM    204  CA  SER   204      29.695   8.906  37.181  1.00 25.00           C
ATOM    205  CA  GLU   205      31.272  10.816  34.287  1.00 25.00           C
ATOM    206  CA  GLY   206      35.069  10.442  34.796  1.00 25.00           C
ATOM    207  CA  ARG   207      37.857   9.176  36.979  1.00 25.00           C
ATOM    208  CA  GLY   208      35.058   8.420  39.413  1.00 25.00           C
ATOM    209  CA  ILE   209      36.320   5.010  40.521  1.00 25.00           C
ATOM    210  CA  SER   210      39.077   5.434  43.071  1.00 25.00           C
ATOM    211  CA  PRO   211      42.087   3.235  42.825  1.00 25.00           C
ATOM    212  CA  GLU   212      42.586   2.484  46.547  1.00 25.00           C
ATOM    213  CA  VAL   213      38.791   2.399  47.064  1.00 25.00           C
ATOM    214  CA  ALA   214      38.417   0.002  44.100  1.00 25.00           C
ATOM    215  CA  ALA   215      41.148  -2.256  45.551  1.00 25.00           C
ATOM    216  CA  GLU   216      39.382  -2.252  48.949  1.00 25.00           C
ATOM    217  CA  ILE   217      36.028  -3.741  48.066  1.00 25.00           C
ATOM    218  CA  THR   218      37.788  -6.203  45.760  1.00 25.00           C
ATOM    219  CA  ASP   219      37.293  -5.283  42.080  1.00 25.00           C
ATOM    220  CA  ARG   220      35.667  -3.254  39.246  1.00 25.00           C
ATOM    221  CA  LEU   221      34.149  -4.322  35.927  1.00 25.00           C
ATOM    222  CA  THR   222      35.227  -1.301  33.878  1.00 25.00           C
ATOM    223  CA  ILE   223      33.623   0.183  30.772  1.00 25.00           C
ATOM    237  CA  LEU   237      27.112   5.710  27.826  1.00 25.00           C
ATOM    238  CA  ASN   238      25.494   8.189  30.261  1.00 25.00           C
ATOM    239  CA  VAL   239      26.984   6.588  33.294  1.00 25.00           C
ATOM    240  CA  ALA   240      23.655   6.277  35.161  1.00 25.00           C
ATOM    241  CA  ILE   241      22.244   4.111  32.336  1.00 25.00           C
ATOM    242  CA  ALA   242      25.353   1.878  32.462  1.00 25.00           C
ATOM    243  CA  THR   243      24.974   1.523  36.257  1.00 25.00           C
ATOM    244  CA  ALA   244      21.287   0.582  35.825  1.00 25.00           C
ATOM    245  CA  ILE   245      22.236  -2.033  33.194  1.00 25.00           C
ATOM    246  CA  LEU   246      24.884  -3.481  35.553  1.00 25.00           C
ATOM    247  CA  CYS   247      22.304  -3.659  38.378  1.00 25.00           C
ATOM    248  CA  SER   248      19.842  -5.446  36.051  1.00 25.00           C
ATOM    249  CA  GLU   249      22.567  -7.944  35.047  1.00 25.00           C
ATOM    250  CA  TRP   250      23.372  -8.585  38.736  1.00 25.00           C
ATOM    251  CA  ARG   251      19.658  -9.162  39.472  1.00 25.00           C
ATOM    252  CA  ARG   252      19.432 -11.616  36.540  1.00 25.00           C
ATOM    253  CA  ARG   253      20.780 -14.470  38.650  1.00 25.00           C
ATOM    254  CA  SER   254      19.461 -13.842  42.170  1.00 25.00           C
TER
END
