
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0378TS393_2-D2
# Molecule2: number of CA atoms  142 ( 1079),  selected  142 , name T0378_D2.pdb
# PARAMETERS: T0378TS393_2-D2.T0378_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   142       100 - 254         3.29     3.29
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       201 - 248         1.97     3.56
  LONGEST_CONTINUOUS_SEGMENT:    35       204 - 251         1.99     3.53
  LCS_AVERAGE:     18.45

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       223 - 254         0.95     4.62
  LCS_AVERAGE:      7.69

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     G     100     G     100      3   11  142     0   20   39   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     101     L     101      4   11  142     3    4    5   11   19   51   92  105  114  126  132  137  138  139  142  142  142  142  142  142 
LCS_GDT     T     102     T     102      6   25  142     3   16   20   40   64   89  104  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     103     L     103      6   28  142     4   12   30   58   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     104     L     104      6   28  142     4    7   10   32   64   89  104  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     105     L     105      6   28  142     6   16   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     106     D     106      6   28  142     7   23   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     107     G     107      6   28  142     4   23   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     108     V     108      5   28  142     4   10   25   57   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Q     109     Q     109      5   28  142     3   16   35   63   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     110     D     110     17   28  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     111     P     111     17   28  142    14   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     112     G     112     17   28  142    14   24   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     N     113     N     113     17   28  142    14   21   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     114     V     114     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     115     G     115     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     116     T     116     17   28  142    14   24   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     117     I     117     17   28  142    14   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     118     L     118     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     119     R     119     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     120     T     120     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     121     A     121     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     122     D     122     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     W     123     W     123     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     F     124     F     124     17   28  142    14   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     125     G     125     17   28  142     7   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     126     I     126     17   28  142     6   23   46   64   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     127     R     127      6   28  142     3    5    8   13   19   45   72   92  105  120  130  136  139  140  142  142  142  142  142  142 
LCS_GDT     H     128     H     128      6   28  142     3    5    8   31   53   72   85  102  117  126  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     129     V     129      6   28  142     3   10   20   49   69   88  104  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     W     130     W     130      6   28  142     3   22   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     131     L     131      6   27  142     3    5    8   29   51   79   98  111  120  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     132     G     132      6   13  142     3   10   12   15   40   59   76  104  116  123  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     133     T     133      5   13  142     3    6   10   28   44   62   88  107  119  123  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     134     G     134      5   23  142     3   10   30   51   70   88  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     135     S     135      5   27  142     3    7   24   58   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     136     A     136      5   27  142     3   10   22   48   80   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     137     D     137      7   27  142     3    8   26   42   69   93  103  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     138     V     138      7   27  142     3    4   15   40   68   93  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     F     139     F     139     13   27  142     4   16   30   56   83   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     140     S     140     13   27  142     6   16   35   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     141     P     141     13   27  142     6   16   38   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     K     142     K     142     13   27  142     6   16   40   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     143     V     143     13   27  142    11   24   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     144     V     144     13   27  142     6   21   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Q     145     Q     145     13   27  142    11   18   40   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     146     A     146     13   27  142     6   19   44   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     147     S     147     13   27  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     M     148     M     148     13   27  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     149     G     149     13   27  142     3   22   46   65   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     150     A     150     13   27  142     4   22   46   65   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     151     L     151     13   27  142     3   10   35   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     152     A     152      7   27  142     3    4   18   32   56   82   96  110  118  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     153     R     153      7   27  142     5   16   30   54   77   92  102  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     154     V     154      7   27  142     4   17   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Q     155     Q     155      7   27  142     4   16   35   64   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     156     P     156      5   27  142     4   14   35   60   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     157     T     157      5   27  142     4    6   18   33   54   81   97  110  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     158     P     158      4   27  142     3   13   20   34   62   76   99  110  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     159     L     159     10   27  142     4   16   29   42   64   82   97  110  118  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     K     160     K     160     12   27  142     4   15   30   54   77   92  103  111  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     N     161     N     161     14   27  142     6   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     162     T     162     14   27  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     163     V     163     14   23  142     8   19   35   55   83   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     164     D     164     14   23  142     8   12   26   45   75   93  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     165     T     165     14   23  142     8   12   32   58   83   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     166     L     166     14   23  142     8   21   43   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     167     A     167     14   23  142     8   12   30   45   72   88  103  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Y     168     Y     168     14   23  142     8   12   22   40   64   84   98  112  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     F     169     F     169     14   23  142     8   13   32   58   83   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     170     R     170     14   23  142     6   17   35   55   80   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     171     R     171     14   23  142     7   12   14   18   36   77   95  106  114  125  132  137  138  139  142  142  142  142  142  142 
LCS_GDT     Q     172     Q     172     14   23  142     3   10   26   45   74   93  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     173     G     173     14   23  142     5   13   32   58   83   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     174     I     174     14   23  142     5   13   32   58   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     175     P     175      7   23  142     4   20   31   58   82   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     176     V     176      7   23  142     4   15   36   66   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Y     177     Y     177      7   23  142     6   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     178     G     178      7   23  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     179     A     179      7   20  142     4   13   42   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     F     180     F     180      7   20  142     3   11   19   36   68   89  103  110  118  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     181     L     181      7   10  142     3   10   30   40   77   91  103  110  118  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     182     D     182      3   10  142     3   23   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     183     G     183      3    9  142     3    4   17   52   78   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Q     184     Q     184      4    9  142     2   15   34   55   78   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     185     S     185      4    5  142     3    9   30   39   63   83  100  111  119  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     186     L     186      4    5  142     3    4   14   24   52   78  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     Y     187     Y     187      4    5  142     3    4   25   37   60   80  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     E     188     E     188      3    5  142     3    3    3    6    6   48   80  102  117  127  132  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     189     A     189      3    5  142     3    9   22   41   58   87   97  109  118  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     190     P     190      4    5  142     3   12   34   52   73   85   96  113  121  127  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     191     L     191      4    5  142     3    6   19   45   62   79   96  111  121  126  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     192     P     192      4    5  142     3    3    7   19   28   50   77   91  102  116  127  135  139  140  142  142  142  142  142  142 
LCS_GDT     N     193     N     193      5   14  142     3    4   13   16   21   31   45   70   93  115  125  133  139  140  142  142  142  142  142  142 
LCS_GDT     F     194     F     194      5   14  142     3    5    9   16   21   22   30   46   64   97  121  129  137  140  142  142  142  142  142  142 
LCS_GDT     T     195     T     195      5   14  142     3    5   13   16   22   35   67   89  100  111  122  131  139  140  142  142  142  142  142  142 
LCS_GDT     E     196     E     196      5   25  142     3   22   42   58   73   93  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     197     P     197      5   25  142     3   21   36   56   73   89  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     198     A     198      5   25  142     3   14   37   59   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     199     I     199      5   25  142     3    9   21   47   73   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     200     L     200      5   25  142     3    5   25   38   78   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     201     V     201      7   35  142     3   14   37   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     202     L     202      7   35  142     7   16   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     203     G     203      7   35  142     3   22   42   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     204     S     204     13   35  142     4   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     E     205     E     205     13   35  142     8   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     206     G     206     13   35  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     207     R     207     13   35  142     5   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     G     208     G     208     13   35  142     4   22   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     209     I     209     13   35  142     5   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     210     S     210     13   35  142     7   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     P     211     P     211     13   35  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     E     212     E     212     13   35  142     6   16   43   65   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     213     V     213     13   35  142     7   16   45   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     214     A     214     13   35  142     7   22   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     215     A     215     13   35  142     6   16   43   63   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     E     216     E     216     13   35  142     7   16   43   63   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     217     I     217      5   35  142     3    4   33   63   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     218     T     218      5   35  142     4   16   42   61   80   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     D     219     D     219      5   35  142     3   13   24   49   72   88  103  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     220     R     220      5   35  142     5   13   28   49   68   88  104  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     221     L     221      5   35  142     3    4   13   26   40   58   75   98  110  123  131  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     222     T     222      5   35  142     3    5    8   29   50   77   95  110  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     223     I     223     19   35  142     3    8   28   58   73   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     237     L     237     19   35  142     4   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     N     238     N     238     19   35  142     6   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     V     239     V     239     19   35  142     9   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     240     A     240     19   35  142     9   23   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     241     I     241     19   35  142     9   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     242     A     242     19   35  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     T     243     T     243     19   35  142     9   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     A     244     A     244     19   35  142    11   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     I     245     I     245     19   35  142     9   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     L     246     L     246     19   35  142     9   20   40   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     C     247     C     247     19   35  142     9   21   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     248     S     248     19   35  142     9   26   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     E     249     E     249     19   35  142     9   20   38   65   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     W     250     W     250     19   35  142     9   20   39   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     251     R     251     19   35  142     9   25   47   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     252     R     252     19   25  142     9   20   38   65   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     R     253     R     253     19   25  142     3   20   39   65   84   94  105  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_GDT     S     254     S     254     19   25  142     4   20   46   67   84   94  106  113  121  128  133  137  139  140  142  142  142  142  142  142 
LCS_AVERAGE  LCS_A:  42.05  (   7.69   18.45  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     26     47     67     84     94    106    113    121    128    133    137    139    140    142    142    142    142    142    142 
GDT PERCENT_CA   9.86  18.31  33.10  47.18  59.15  66.20  74.65  79.58  85.21  90.14  93.66  96.48  97.89  98.59 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.19   0.74   1.04   1.43   1.65   1.82   2.16   2.30   2.52   2.69   2.85   3.00   3.15   3.22   3.29   3.29   3.29   3.29   3.29   3.29
GDT RMS_ALL_CA   4.96   3.40   3.36   3.36   3.38   3.39   3.32   3.31   3.30   3.34   3.31   3.32   3.30   3.30   3.29   3.29   3.29   3.29   3.29   3.29

#      Molecule1      Molecule2       DISTANCE
LGA    G     100      G     100          2.736
LGA    L     101      L     101          6.263
LGA    T     102      T     102          3.908
LGA    L     103      L     103          2.306
LGA    L     104      L     104          3.531
LGA    L     105      L     105          1.243
LGA    D     106      D     106          1.282
LGA    G     107      G     107          1.523
LGA    V     108      V     108          2.072
LGA    Q     109      Q     109          2.828
LGA    D     110      D     110          0.800
LGA    P     111      P     111          1.726
LGA    G     112      G     112          1.857
LGA    N     113      N     113          2.059
LGA    V     114      V     114          1.769
LGA    G     115      G     115          1.476
LGA    T     116      T     116          1.944
LGA    I     117      I     117          1.949
LGA    L     118      L     118          1.433
LGA    R     119      R     119          1.330
LGA    T     120      T     120          1.721
LGA    A     121      A     121          1.682
LGA    D     122      D     122          1.200
LGA    W     123      W     123          1.360
LGA    F     124      F     124          1.251
LGA    G     125      G     125          2.002
LGA    I     126      I     126          2.476
LGA    R     127      R     127          6.399
LGA    H     128      H     128          5.518
LGA    V     129      V     129          3.813
LGA    W     130      W     130          2.088
LGA    L     131      L     131          4.335
LGA    G     132      G     132          5.608
LGA    T     133      T     133          5.704
LGA    G     134      G     134          3.576
LGA    S     135      S     135          2.206
LGA    A     136      A     136          3.135
LGA    D     137      D     137          4.241
LGA    V     138      V     138          3.874
LGA    F     139      F     139          3.112
LGA    S     140      S     140          2.674
LGA    P     141      P     141          2.462
LGA    K     142      K     142          2.555
LGA    V     143      V     143          1.114
LGA    V     144      V     144          1.036
LGA    Q     145      Q     145          2.183
LGA    A     146      A     146          2.223
LGA    S     147      S     147          1.097
LGA    M     148      M     148          1.652
LGA    G     149      G     149          2.484
LGA    A     150      A     150          2.637
LGA    L     151      L     151          2.148
LGA    A     152      A     152          4.995
LGA    R     153      R     153          3.848
LGA    V     154      V     154          2.169
LGA    Q     155      Q     155          2.606
LGA    P     156      P     156          2.538
LGA    T     157      T     157          4.864
LGA    P     158      P     158          4.771
LGA    L     159      L     159          5.044
LGA    K     160      K     160          4.267
LGA    N     161      N     161          0.758
LGA    T     162      T     162          0.683
LGA    V     163      V     163          3.045
LGA    D     164      D     164          3.981
LGA    T     165      T     165          2.489
LGA    L     166      L     166          1.867
LGA    A     167      A     167          4.805
LGA    Y     168      Y     168          5.068
LGA    F     169      F     169          2.466
LGA    R     170      R     170          3.948
LGA    R     171      R     171          6.848
LGA    Q     172      Q     172          3.977
LGA    G     173      G     173          3.015
LGA    I     174      I     174          2.516
LGA    P     175      P     175          3.320
LGA    V     176      V     176          2.136
LGA    Y     177      Y     177          1.160
LGA    G     178      G     178          0.618
LGA    A     179      A     179          2.378
LGA    F     180      F     180          5.187
LGA    L     181      L     181          5.330
LGA    D     182      D     182          1.312
LGA    G     183      G     183          2.957
LGA    Q     184      Q     184          3.015
LGA    S     185      S     185          5.298
LGA    L     186      L     186          4.705
LGA    Y     187      Y     187          3.938
LGA    E     188      E     188          5.571
LGA    A     189      A     189          4.978
LGA    P     190      P     190          4.408
LGA    L     191      L     191          4.946
LGA    P     192      P     192          7.188
LGA    N     193      N     193          8.304
LGA    F     194      F     194          8.713
LGA    T     195      T     195          8.309
LGA    E     196      E     196          3.519
LGA    P     197      P     197          3.730
LGA    A     198      A     198          1.897
LGA    I     199      I     199          2.943
LGA    L     200      L     200          3.317
LGA    V     201      V     201          1.812
LGA    L     202      L     202          1.544
LGA    G     203      G     203          2.302
LGA    S     204      S     204          1.458
LGA    E     205      E     205          1.531
LGA    G     206      G     206          0.732
LGA    R     207      R     207          0.681
LGA    G     208      G     208          1.067
LGA    I     209      I     209          1.035
LGA    S     210      S     210          0.971
LGA    P     211      P     211          0.801
LGA    E     212      E     212          2.175
LGA    V     213      V     213          1.832
LGA    A     214      A     214          1.634
LGA    A     215      A     215          2.338
LGA    E     216      E     216          2.159
LGA    I     217      I     217          2.743
LGA    T     218      T     218          2.911
LGA    D     219      D     219          3.932
LGA    R     220      R     220          3.769
LGA    L     221      L     221          5.837
LGA    T     222      T     222          4.423
LGA    I     223      I     223          2.876
LGA    L     237      L     237          1.431
LGA    N     238      N     238          1.204
LGA    V     239      V     239          0.920
LGA    A     240      A     240          0.870
LGA    I     241      I     241          0.662
LGA    A     242      A     242          0.653
LGA    T     243      T     243          0.805
LGA    A     244      A     244          0.518
LGA    I     245      I     245          1.316
LGA    L     246      L     246          1.769
LGA    C     247      C     247          1.071
LGA    S     248      S     248          1.242
LGA    E     249      E     249          2.560
LGA    W     250      W     250          2.305
LGA    R     251      R     251          1.167
LGA    R     252      R     252          2.989
LGA    R     253      R     253          3.305
LGA    S     254      S     254          2.424

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    113    2.30    61.268    55.565     4.717

LGA_LOCAL      RMSD =  2.295  Number of atoms =  113  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.310  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  3.294  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.554754 * X  +  -0.244527 * Y  +   0.795270 * Z  +  19.646959
  Y_new =  -0.204060 * X  +  -0.886656 * Y  +  -0.414971 * Z  +   8.897080
  Z_new =   0.806603 * X  +  -0.392489 * Y  +   0.441977 * Z  +  45.058468 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.726163    2.415430  [ DEG:   -41.6061    138.3939 ]
  Theta =  -0.938382   -2.203211  [ DEG:   -53.7653   -126.2347 ]
  Phi   =  -2.789115    0.352477  [ DEG:  -159.8045     20.1955 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0378TS393_2-D2                               
REMARK     2: T0378_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0378TS393_2-D2.T0378_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  113   2.30  55.565     3.29
REMARK  ---------------------------------------------------------- 
MOLECULE T0378TS393_2-D2
PFRMAT TS
TARGET T0378
MODEL 2
PARENT N/A
ATOM    100  CA  GLY   100      18.428  -4.547  50.541  1.00 25.00           C
ATOM    101  CA  LEU   101      17.883  -0.938  49.458  1.00 25.00           C
ATOM    102  CA  THR   102      19.256   1.077  46.517  1.00 25.00           C
ATOM    103  CA  LEU   103      21.839   1.330  43.659  1.00 25.00           C
ATOM    104  CA  LEU   104      24.032   4.458  43.697  1.00 25.00           C
ATOM    105  CA  LEU   105      26.754   6.952  42.705  1.00 25.00           C
ATOM    106  CA  ASP   106      30.468   6.824  43.515  1.00 25.00           C
ATOM    107  CA  GLY   107      32.238  10.109  42.784  1.00 25.00           C
ATOM    108  CA  VAL   108      29.720  12.656  41.596  1.00 25.00           C
ATOM    109  CA  GLN   109      29.158  13.958  38.113  1.00 25.00           C
ATOM    110  CA  ASP   110      25.571  15.329  38.411  1.00 25.00           C
ATOM    111  CA  PRO   111      22.166  14.878  39.944  1.00 25.00           C
ATOM    112  CA  GLY   112      21.119  13.310  36.611  1.00 25.00           C
ATOM    113  CA  ASN   113      23.113  10.148  37.444  1.00 25.00           C
ATOM    114  CA  VAL   114      21.435   9.966  40.881  1.00 25.00           C
ATOM    115  CA  GLY   115      17.992  10.344  39.248  1.00 25.00           C
ATOM    116  CA  THR   116      18.833   7.546  36.770  1.00 25.00           C
ATOM    117  CA  ILE   117      19.951   5.293  39.658  1.00 25.00           C
ATOM    118  CA  LEU   118      16.689   6.024  41.526  1.00 25.00           C
ATOM    119  CA  ARG   119      14.671   5.176  38.383  1.00 25.00           C
ATOM    120  CA  THR   120      16.602   1.891  38.000  1.00 25.00           C
ATOM    121  CA  ALA   121      15.915   1.032  41.669  1.00 25.00           C
ATOM    122  CA  ASP   122      12.190   1.767  41.170  1.00 25.00           C
ATOM    123  CA  TRP   123      12.137  -0.477  38.067  1.00 25.00           C
ATOM    124  CA  PHE   124      14.143  -3.263  39.696  1.00 25.00           C
ATOM    125  CA  GLY   125      13.937  -3.735  43.480  1.00 25.00           C
ATOM    126  CA  ILE   126      17.328  -3.197  44.954  1.00 25.00           C
ATOM    127  CA  ARG   127      20.785  -3.424  46.462  1.00 25.00           C
ATOM    128  CA  HIS   128      22.984  -1.414  48.790  1.00 25.00           C
ATOM    129  CA  VAL   129      23.227   2.380  49.296  1.00 25.00           C
ATOM    130  CA  TRP   130      25.851   5.105  49.036  1.00 25.00           C
ATOM    131  CA  LEU   131      24.703   7.405  51.841  1.00 25.00           C
ATOM    132  CA  GLY   132      26.728  10.195  53.315  1.00 25.00           C
ATOM    133  CA  THR   133      27.545  13.590  51.933  1.00 25.00           C
ATOM    134  CA  GLY   134      30.034  14.879  49.364  1.00 25.00           C
ATOM    135  CA  SER   135      28.329  14.888  45.967  1.00 25.00           C
ATOM    136  CA  ALA   136      27.409  17.048  42.961  1.00 25.00           C
ATOM    137  CA  ASP   137      23.920  18.414  43.018  1.00 25.00           C
ATOM    138  CA  VAL   138      22.739  15.719  45.415  1.00 25.00           C
ATOM    139  CA  PHE   139      19.118  16.996  45.497  1.00 25.00           C
ATOM    140  CA  SER   140      19.180  20.032  43.136  1.00 25.00           C
ATOM    141  CA  PRO   141      16.081  20.584  41.004  1.00 25.00           C
ATOM    142  CA  LYS   142      17.106  18.235  38.158  1.00 25.00           C
ATOM    143  CA  VAL   143      17.314  15.307  40.617  1.00 25.00           C
ATOM    144  CA  VAL   144      13.833  16.161  41.968  1.00 25.00           C
ATOM    145  CA  GLN   145      12.451  16.282  38.398  1.00 25.00           C
ATOM    146  CA  ALA   146      14.029  12.874  37.646  1.00 25.00           C
ATOM    147  CA  SER   147      12.481  11.426  40.835  1.00 25.00           C
ATOM    148  CA  MET   148       9.224   9.739  39.841  1.00 25.00           C
ATOM    149  CA  GLY   149       9.689   8.033  43.175  1.00 25.00           C
ATOM    150  CA  ALA   150      12.781   6.505  44.760  1.00 25.00           C
ATOM    151  CA  LEU   151      13.795  10.052  45.790  1.00 25.00           C
ATOM    152  CA  ALA   152      12.838   9.297  49.421  1.00 25.00           C
ATOM    153  CA  ARG   153      12.622   5.538  49.955  1.00 25.00           C
ATOM    154  CA  VAL   154      15.797   4.416  48.216  1.00 25.00           C
ATOM    155  CA  GLN   155      17.979   6.897  50.079  1.00 25.00           C
ATOM    156  CA  PRO   156      20.392   9.320  48.314  1.00 25.00           C
ATOM    157  CA  THR   157      23.713  11.077  48.902  1.00 25.00           C
ATOM    158  CA  PRO   158      27.348  10.085  48.306  1.00 25.00           C
ATOM    159  CA  LEU   159      30.783  10.109  49.893  1.00 25.00           C
ATOM    160  CA  LYS   160      32.405  11.598  53.028  1.00 25.00           C
ATOM    161  CA  ASN   161      31.988   8.571  55.294  1.00 25.00           C
ATOM    162  CA  THR   162      31.976   5.851  52.649  1.00 25.00           C
ATOM    163  CA  VAL   163      33.998   3.954  55.292  1.00 25.00           C
ATOM    164  CA  ASP   164      30.963   3.928  57.629  1.00 25.00           C
ATOM    165  CA  THR   165      28.760   2.596  54.794  1.00 25.00           C
ATOM    166  CA  LEU   166      31.323  -0.153  54.061  1.00 25.00           C
ATOM    167  CA  ALA   167      31.400  -1.105  57.770  1.00 25.00           C
ATOM    168  CA  TYR   168      27.574  -1.262  57.835  1.00 25.00           C
ATOM    169  CA  PHE   169      27.589  -3.495  54.723  1.00 25.00           C
ATOM    170  CA  ARG   170      30.174  -5.800  56.359  1.00 25.00           C
ATOM    171  CA  ARG   171      28.025  -6.005  59.521  1.00 25.00           C
ATOM    172  CA  GLN   172      26.720  -9.098  57.872  1.00 25.00           C
ATOM    173  CA  GLY   173      27.750 -10.404  54.467  1.00 25.00           C
ATOM    174  CA  ILE   174      26.056  -7.951  52.163  1.00 25.00           C
ATOM    175  CA  PRO   175      29.152  -6.096  50.779  1.00 25.00           C
ATOM    176  CA  VAL   176      29.561  -3.768  47.839  1.00 25.00           C
ATOM    177  CA  TYR   177      30.531  -4.152  44.239  1.00 25.00           C
ATOM    178  CA  GLY   178      31.994  -2.425  41.126  1.00 25.00           C
ATOM    179  CA  ALA   179      29.911  -2.115  37.942  1.00 25.00           C
ATOM    180  CA  PHE   180      32.190  -4.582  36.068  1.00 25.00           C
ATOM    181  CA  LEU   181      34.108  -4.909  32.850  1.00 25.00           C
ATOM    182  CA  ASP   182      37.604  -3.591  33.254  1.00 25.00           C
ATOM    183  CA  GLY   183      39.888  -6.629  33.830  1.00 25.00           C
ATOM    184  CA  GLN   184      37.321  -7.740  36.422  1.00 25.00           C
ATOM    185  CA  SER   185      33.847  -8.994  37.336  1.00 25.00           C
ATOM    186  CA  LEU   186      33.689 -10.015  33.691  1.00 25.00           C
ATOM    187  CA  TYR   187      30.262  -8.564  32.878  1.00 25.00           C
ATOM    188  CA  GLU   188      26.675  -9.697  32.891  1.00 25.00           C
ATOM    189  CA  ALA   189      25.560 -12.583  35.148  1.00 25.00           C
ATOM    190  CA  PRO   190      29.036 -14.168  34.881  1.00 25.00           C
ATOM    191  CA  LEU   191      29.733 -14.307  38.561  1.00 25.00           C
ATOM    192  CA  PRO   192      27.143 -16.975  39.329  1.00 25.00           C
ATOM    193  CA  ASN   193      27.388 -15.753  42.969  1.00 25.00           C
ATOM    194  CA  PHE   194      26.433 -12.125  42.443  1.00 25.00           C
ATOM    195  CA  THR   195      22.892 -13.496  42.795  1.00 25.00           C
ATOM    196  CA  GLU   196      22.568 -12.337  46.401  1.00 25.00           C
ATOM    197  CA  PRO   197      24.877  -9.544  47.564  1.00 25.00           C
ATOM    198  CA  ALA   198      25.026  -6.163  45.952  1.00 25.00           C
ATOM    199  CA  ILE   199      25.567  -2.676  44.516  1.00 25.00           C
ATOM    200  CA  LEU   200      27.038   0.625  45.840  1.00 25.00           C
ATOM    201  CA  VAL   201      28.221   1.587  42.401  1.00 25.00           C
ATOM    202  CA  LEU   202      28.700   3.295  39.058  1.00 25.00           C
ATOM    203  CA  GLY   203      31.557   5.414  37.721  1.00 25.00           C
ATOM    204  CA  SER   204      30.226   8.951  37.624  1.00 25.00           C
ATOM    205  CA  GLU   205      31.155   9.226  34.018  1.00 25.00           C
ATOM    206  CA  GLY   206      34.206  11.444  34.127  1.00 25.00           C
ATOM    207  CA  ARG   207      37.185  10.276  36.184  1.00 25.00           C
ATOM    208  CA  GLY   208      36.567   6.627  37.154  1.00 25.00           C
ATOM    209  CA  ILE   209      36.590   5.732  40.893  1.00 25.00           C
ATOM    210  CA  SER   210      38.163   6.768  44.197  1.00 25.00           C
ATOM    211  CA  PRO   211      40.980   4.217  44.392  1.00 25.00           C
ATOM    212  CA  GLU   212      39.663   2.773  47.686  1.00 25.00           C
ATOM    213  CA  VAL   213      36.211   2.259  46.109  1.00 25.00           C
ATOM    214  CA  ALA   214      37.816   0.489  43.115  1.00 25.00           C
ATOM    215  CA  ALA   215      39.799  -1.773  45.484  1.00 25.00           C
ATOM    216  CA  GLU   216      36.594  -2.610  47.407  1.00 25.00           C
ATOM    217  CA  ILE   217      34.815  -5.853  46.544  1.00 25.00           C
ATOM    218  CA  THR   218      38.000  -6.556  44.548  1.00 25.00           C
ATOM    219  CA  ASP   219      37.079  -5.300  41.110  1.00 25.00           C
ATOM    220  CA  ARG   220      36.981  -2.436  38.625  1.00 25.00           C
ATOM    221  CA  LEU   221      34.418  -0.127  37.012  1.00 25.00           C
ATOM    222  CA  THR   222      32.782   0.022  33.540  1.00 25.00           C
ATOM    223  CA  ILE   223      30.180  -1.118  31.067  1.00 25.00           C
ATOM    237  CA  LEU   237      28.407   4.948  28.970  1.00 25.00           C
ATOM    238  CA  ASN   238      26.949   8.155  30.394  1.00 25.00           C
ATOM    239  CA  VAL   239      26.739   6.803  33.915  1.00 25.00           C
ATOM    240  CA  ALA   240      22.940   6.395  33.670  1.00 25.00           C
ATOM    241  CA  ILE   241      23.385   3.504  31.197  1.00 25.00           C
ATOM    242  CA  ALA   242      25.891   1.834  33.563  1.00 25.00           C
ATOM    243  CA  THR   243      23.436   2.221  36.477  1.00 25.00           C
ATOM    244  CA  ALA   244      20.643   0.674  34.361  1.00 25.00           C
ATOM    245  CA  ILE   245      22.928  -2.259  33.444  1.00 25.00           C
ATOM    246  CA  LEU   246      23.789  -2.777  37.139  1.00 25.00           C
ATOM    247  CA  CYS   247      20.065  -2.747  38.035  1.00 25.00           C
ATOM    248  CA  SER   248      19.358  -5.322  35.291  1.00 25.00           C
ATOM    249  CA  GLU   249      22.188  -7.541  36.610  1.00 25.00           C
ATOM    250  CA  TRP   250      20.771  -7.278  40.159  1.00 25.00           C
ATOM    251  CA  ARG   251      17.294  -8.234  38.868  1.00 25.00           C
ATOM    252  CA  ARG   252      18.779 -11.248  37.030  1.00 25.00           C
ATOM    253  CA  ARG   253      19.045 -13.628  39.951  1.00 25.00           C
ATOM    254  CA  SER   254      15.865 -13.471  41.914  1.00 25.00           C
TER
END
