
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0378TS393_3-D2
# Molecule2: number of CA atoms  142 ( 1079),  selected  142 , name T0378_D2.pdb
# PARAMETERS: T0378TS393_3-D2.T0378_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   142       100 - 254         2.85     2.85
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    80       100 - 179         1.95     3.23
  LCS_AVERAGE:     38.82

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29       105 - 133         0.96     3.05
  LCS_AVERAGE:      9.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     G     100     G     100      5   80  142     4   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     101     L     101      5   80  142     6   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     102     T     102      5   80  142     8   24   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     103     L     103      7   80  142     5   14   37   79   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     104     L     104      7   80  142     4    7   15   36   81  100  115  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     105     L     105     29   80  142     7   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     106     D     106     29   80  142     7   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     107     G     107     29   80  142    11   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     108     V     108     29   80  142     6   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     Q     109     Q     109     29   80  142     4   24   58   83   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     110     D     110     29   80  142    11   37   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     111     P     111     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     112     G     112     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     N     113     N     113     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     114     V     114     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     115     G     115     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     116     T     116     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     117     I     117     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     118     L     118     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     119     R     119     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     120     T     120     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     121     A     121     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     122     D     122     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     W     123     W     123     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     F     124     F     124     29   80  142    19   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     125     G     125     29   80  142     6   34   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     126     I     126     29   80  142    14   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     127     R     127     29   80  142    11   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     H     128     H     128     29   80  142    13   37   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     129     V     129     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     W     130     W     130     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     131     L     131     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     132     G     132     29   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     133     T     133     29   80  142     3   12   44   81   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     134     G     134     25   80  142     1    9   41   77   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     135     S     135      4   80  142     3    4   14   32   67  104  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     136     A     136      4   80  142     3    6   22   61   95  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     137     D     137     10   80  142     4   15   36   71   95  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     138     V     138     10   80  142     4    8   26   69   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     F     139     F     139     10   80  142     4    8   16   47   71  105  115  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     140     S     140     12   80  142     5   30   53   82   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     141     P     141     12   80  142    17   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     K     142     K     142     12   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     143     V     143     12   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     144     V     144     12   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     Q     145     Q     145     12   80  142    20   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     146     A     146     12   80  142     7   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     147     S     147     12   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     M     148     M     148     12   80  142    21   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     149     G     149     12   80  142     7   37   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     150     A     150     12   80  142     4    5   31   77   96  107  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     151     L     151     12   80  142     4   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     152     A     152      6   80  142     4    5   25   49   90  106  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     153     R     153      6   80  142     6   32   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     154     V     154      6   80  142     3   15   67   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     Q     155     Q     155      7   80  142     4    7   23   45   81  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     156     P     156      8   80  142     4   17   53   82   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     157     T     157      8   80  142    11   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     158     P     158      8   80  142     4   23   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     159     L     159      8   80  142     6   28   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     K     160     K     160     12   80  142    19   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     N     161     N     161     12   80  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     162     T     162     12   80  142    23   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     163     V     163     12   80  142     9   29   64   84   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     164     D     164     12   80  142     8   17   59   83   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     165     T     165     12   80  142     8   19   69   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     166     L     166     12   80  142    17   37   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     167     A     167     12   80  142     8   13   22   58   95  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     Y     168     Y     168     12   80  142     8   13   20   49   89  107  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     F     169     F     169     12   80  142     8   16   50   83   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     170     R     170     12   80  142     8   18   42   75   95  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     171     R     171     12   80  142     7   13   14   27   46   71   95  118  123  130  134  135  139  140  142  142  142  142  142  142 
LCS_GDT     Q     172     Q     172     11   80  142     3   18   27   79   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     173     G     173      4   80  142     5   13   27   60   94  107  115  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     174     I     174      6   80  142     4   25   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     175     P     175      6   80  142     3   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     176     V     176      6   80  142     8   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     Y     177     Y     177      6   80  142     6   35   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     178     G     178      6   80  142     3   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     179     A     179      6   80  142     3   17   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     F     180     F     180      4   76  142     2    4   10   27   75  100  112  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     181     L     181      3   11  142     1    3    4    7   13   77  102  115  121  129  134  135  139  141  142  142  142  142  142  142 
LCS_GDT     D     182     D     182      3   11  142     1    4    6   16   33   60   96  112  121  126  134  135  138  141  142  142  142  142  142  142 
LCS_GDT     G     183     G     183      3    6  142     3    8   22   32   51   70   85  103  116  125  134  135  138  141  142  142  142  142  142  142 
LCS_GDT     Q     184     Q     184      4    6  142     4    4    4   47   73   97  115  123  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     185     S     185      4    6  142     4    6   15   41   62  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     186     L     186      4    6  142     4    7   15   21   39   55   97  120  128  131  133  136  139  141  142  142  142  142  142  142 
LCS_GDT     Y     187     Y     187      4    6  142     4    4   17   21   28   48   68  104  113  129  133  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     188     E     188      3    6  142     3    3    5    5    6   32  106  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     189     A     189      3    6  142     3    9   22   37   57   96  112  119  126  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     190     P     190      3    6  142     3   10   33   68   91  104  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     191     L     191      3    5  142     3   14   36   68   93  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     192     P     192      3    5  142     0   10   20   47   73   95  111  121  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     N     193     N     193      5   15  142     3    6   12   19   30   46   79  104  121  129  133  136  139  141  142  142  142  142  142  142 
LCS_GDT     F     194     F     194      7   15  142     3    6   12   17   24   36   57   80  116  129  133  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     195     T     195      7   15  142     3    6   12   19   30   66   97  116  123  129  133  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     196     E     196      8   23  142     3   13   36   58   89  106  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     197     P     197      8   23  142     7   20   58   85   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     198     A     198      8   23  142     3   18   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     199     I     199      8   23  142     3   21   55   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     200     L     200      8   23  142     3   19   63   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     201     V     201      8   23  142     3   19   63   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     202     L     202      8   27  142     7   35   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     203     G     203      8   27  142     3    9   21   66   93  106  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     204     S     204      7   28  142     8   35   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     205     E     205      7   28  142     4   16   45   83   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     206     G     206      7   28  142     8   35   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     207     R     207     11   28  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     G     208     G     208     11   28  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     209     I     209     11   28  142    23   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     210     S     210     11   28  142    24   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     P     211     P     211     11   28  142     5   11   64   84   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     212     E     212     11   28  142     5   11   42   78   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     213     V     213     11   28  142     5   23   40   78   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     214     A     214     11   28  142    19   38   69   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     215     A     215     11   28  142    17   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     216     E     216     11   28  142    19   37   66   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     217     I     217     11   28  142    20   38   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     218     T     218     11   28  142    11   27   59   84   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     D     219     D     219      7   28  142     3   11   34   63   90  106  116  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     220     R     220      7   28  142     3   16   36   72   90  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     221     L     221      7   28  142     3   13   36   72   92  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     222     T     222      7   28  142     3   11   29   61   88  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     223     I     223      7   28  142     3    5   13   23   53   81  112  123  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     237     L     237     18   28  142     7   22   63   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     N     238     N     238     18   28  142     5   17   60   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     V     239     V     239     18   28  142     9   16   60   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     240     A     240     18   28  142    12   17   60   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     241     I     241     18   28  142    12   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     242     A     242     18   28  142    12   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     T     243     T     243     18   28  142    12   24   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     A     244     A     244     18   28  142    12   36   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     I     245     I     245     18   25  142    12   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     L     246     L     246     18   25  142    12   16   53   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     C     247     C     247     18   25  142    12   24   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     248     S     248     18   25  142    12   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     E     249     E     249     18   25  142    12   16   43   74   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     W     250     W     250     18   25  142    12   16   28   82   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     251     R     251     18   25  142    12   33   71   85   97  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     252     R     252     18   25  142     9   16   43   72   93  106  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     R     253     R     253     18   25  142     3   27   55   77   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_GDT     S     254     S     254     18   25  142    12   18   55   79   96  107  117  124  129  132  134  136  139  141  142  142  142  142  142  142 
LCS_AVERAGE  LCS_A:  49.53  (   9.76   38.82  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     38     71     85     97    107    117    124    129    132    134    136    139    141    142    142    142    142    142    142 
GDT PERCENT_CA  16.90  26.76  50.00  59.86  68.31  75.35  82.39  87.32  90.85  92.96  94.37  95.77  97.89  99.30 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.30   0.51   1.07   1.27   1.49   1.65   1.94   2.10   2.22   2.33   2.43   2.56   2.68   2.80   2.85   2.85   2.85   2.85   2.85   2.85
GDT RMS_ALL_CA   3.14   3.22   2.94   2.90   2.93   2.90   2.87   2.86   2.87   2.86   2.86   2.86   2.86   2.86   2.85   2.85   2.85   2.85   2.85   2.85

#      Molecule1      Molecule2       DISTANCE
LGA    G     100      G     100          0.449
LGA    L     101      L     101          0.772
LGA    T     102      T     102          1.268
LGA    L     103      L     103          2.621
LGA    L     104      L     104          3.916
LGA    L     105      L     105          1.123
LGA    D     106      D     106          1.425
LGA    G     107      G     107          1.428
LGA    V     108      V     108          1.145
LGA    Q     109      Q     109          2.510
LGA    D     110      D     110          1.615
LGA    P     111      P     111          1.104
LGA    G     112      G     112          1.286
LGA    N     113      N     113          1.214
LGA    V     114      V     114          0.993
LGA    G     115      G     115          1.077
LGA    T     116      T     116          1.351
LGA    I     117      I     117          1.221
LGA    L     118      L     118          1.123
LGA    R     119      R     119          1.283
LGA    T     120      T     120          1.537
LGA    A     121      A     121          1.436
LGA    D     122      D     122          1.465
LGA    W     123      W     123          1.883
LGA    F     124      F     124          1.686
LGA    G     125      G     125          1.532
LGA    I     126      I     126          2.249
LGA    R     127      R     127          2.225
LGA    H     128      H     128          1.658
LGA    V     129      V     129          0.969
LGA    W     130      W     130          1.019
LGA    L     131      L     131          0.879
LGA    G     132      G     132          0.774
LGA    T     133      T     133          2.082
LGA    G     134      G     134          2.480
LGA    S     135      S     135          3.994
LGA    A     136      A     136          3.173
LGA    D     137      D     137          3.596
LGA    V     138      V     138          3.164
LGA    F     139      F     139          4.542
LGA    S     140      S     140          2.734
LGA    P     141      P     141          1.527
LGA    K     142      K     142          1.132
LGA    V     143      V     143          0.943
LGA    V     144      V     144          0.800
LGA    Q     145      Q     145          1.012
LGA    A     146      A     146          1.563
LGA    S     147      S     147          1.431
LGA    M     148      M     148          0.757
LGA    G     149      G     149          0.821
LGA    A     150      A     150          2.856
LGA    L     151      L     151          0.806
LGA    A     152      A     152          4.214
LGA    R     153      R     153          1.945
LGA    V     154      V     154          1.245
LGA    Q     155      Q     155          3.487
LGA    P     156      P     156          2.486
LGA    T     157      T     157          1.758
LGA    P     158      P     158          1.713
LGA    L     159      L     159          1.437
LGA    K     160      K     160          2.015
LGA    N     161      N     161          1.824
LGA    T     162      T     162          1.339
LGA    V     163      V     163          1.689
LGA    D     164      D     164          1.834
LGA    T     165      T     165          1.412
LGA    L     166      L     166          1.147
LGA    A     167      A     167          3.565
LGA    Y     168      Y     168          3.999
LGA    F     169      F     169          2.272
LGA    R     170      R     170          3.808
LGA    R     171      R     171          6.454
LGA    Q     172      Q     172          3.293
LGA    G     173      G     173          4.565
LGA    I     174      I     174          1.531
LGA    P     175      P     175          1.337
LGA    V     176      V     176          1.038
LGA    Y     177      Y     177          1.106
LGA    G     178      G     178          0.717
LGA    A     179      A     179          1.662
LGA    F     180      F     180          4.242
LGA    L     181      L     181          6.406
LGA    D     182      D     182          7.438
LGA    G     183      G     183          7.758
LGA    Q     184      Q     184          4.745
LGA    S     185      S     185          3.853
LGA    L     186      L     186          5.449
LGA    Y     187      Y     187          6.332
LGA    E     188      E     188          4.735
LGA    A     189      A     189          5.885
LGA    P     190      P     190          3.823
LGA    L     191      L     191          3.128
LGA    P     192      P     192          4.892
LGA    N     193      N     193          6.984
LGA    F     194      F     194          7.193
LGA    T     195      T     195          6.373
LGA    E     196      E     196          3.948
LGA    P     197      P     197          2.029
LGA    A     198      A     198          1.679
LGA    I     199      I     199          1.734
LGA    L     200      L     200          1.774
LGA    V     201      V     201          1.869
LGA    L     202      L     202          1.732
LGA    G     203      G     203          3.328
LGA    S     204      S     204          0.390
LGA    E     205      E     205          2.455
LGA    G     206      G     206          0.724
LGA    R     207      R     207          2.391
LGA    G     208      G     208          1.683
LGA    I     209      I     209          1.276
LGA    S     210      S     210          2.063
LGA    P     211      P     211          1.944
LGA    E     212      E     212          3.029
LGA    V     213      V     213          3.107
LGA    A     214      A     214          2.033
LGA    A     215      A     215          1.738
LGA    E     216      E     216          2.092
LGA    I     217      I     217          1.580
LGA    T     218      T     218          2.545
LGA    D     219      D     219          3.687
LGA    R     220      R     220          3.391
LGA    L     221      L     221          2.876
LGA    T     222      T     222          3.284
LGA    I     223      I     223          4.782
LGA    L     237      L     237          1.650
LGA    N     238      N     238          2.061
LGA    V     239      V     239          2.336
LGA    A     240      A     240          2.101
LGA    I     241      I     241          1.289
LGA    A     242      A     242          1.104
LGA    T     243      T     243          1.489
LGA    A     244      A     244          0.763
LGA    I     245      I     245          1.078
LGA    L     246      L     246          1.950
LGA    C     247      C     247          1.359
LGA    S     248      S     248          1.088
LGA    E     249      E     249          2.685
LGA    W     250      W     250          2.610
LGA    R     251      R     251          1.369
LGA    R     252      R     252          3.331
LGA    R     253      R     253          3.055
LGA    S     254      S     254          2.923

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    124    2.10    68.486    65.903     5.648

LGA_LOCAL      RMSD =  2.096  Number of atoms =  124  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  2.874  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  2.855  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.942647 * X  +  -0.329016 * Y  +  -0.056261 * Z  +  20.511782
  Y_new =   0.125991 * X  +  -0.194633 * Y  +  -0.972751 * Z  +   9.382742
  Z_new =   0.309100 * X  +  -0.924049 * Y  +   0.224924 * Z  +  45.391483 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.332029    1.809564  [ DEG:   -76.3196    103.6804 ]
  Theta =  -0.314247   -2.827346  [ DEG:   -18.0050   -161.9950 ]
  Phi   =   3.008723   -0.132870  [ DEG:   172.3871     -7.6129 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0378TS393_3-D2                               
REMARK     2: T0378_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0378TS393_3-D2.T0378_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  124   2.10  65.903     2.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0378TS393_3-D2
PFRMAT TS
TARGET T0378
MODEL 3
PARENT N/A
ATOM    100  CA  GLY   100      18.814  -6.306  48.230  1.00 25.00           C
ATOM    101  CA  LEU   101      20.767  -4.123  45.871  1.00 25.00           C
ATOM    102  CA  THR   102      21.453  -0.461  46.617  1.00 25.00           C
ATOM    103  CA  LEU   103      21.709   1.376  43.279  1.00 25.00           C
ATOM    104  CA  LEU   104      23.866   4.426  43.276  1.00 25.00           C
ATOM    105  CA  LEU   105      26.588   7.033  43.004  1.00 25.00           C
ATOM    106  CA  ASP   106      30.276   7.865  43.055  1.00 25.00           C
ATOM    107  CA  GLY   107      31.020  11.387  41.731  1.00 25.00           C
ATOM    108  CA  VAL   108      27.579  11.809  40.193  1.00 25.00           C
ATOM    109  CA  GLN   109      28.439  14.829  38.048  1.00 25.00           C
ATOM    110  CA  ASP   110      25.140  15.114  36.289  1.00 25.00           C
ATOM    111  CA  PRO   111      22.288  15.126  38.734  1.00 25.00           C
ATOM    112  CA  GLY   112      20.222  13.724  35.830  1.00 25.00           C
ATOM    113  CA  ASN   113      22.232  10.467  35.940  1.00 25.00           C
ATOM    114  CA  VAL   114      21.658  10.210  39.718  1.00 25.00           C
ATOM    115  CA  GLY   115      17.903  10.765  39.208  1.00 25.00           C
ATOM    116  CA  THR   116      17.839   8.038  36.520  1.00 25.00           C
ATOM    117  CA  ILE   117      19.673   5.639  38.875  1.00 25.00           C
ATOM    118  CA  LEU   118      17.156   6.408  41.658  1.00 25.00           C
ATOM    119  CA  ARG   119      14.253   5.749  39.248  1.00 25.00           C
ATOM    120  CA  THR   120      15.835   2.418  38.215  1.00 25.00           C
ATOM    121  CA  ALA   121      16.245   1.443  41.896  1.00 25.00           C
ATOM    122  CA  ASP   122      12.578   2.323  42.563  1.00 25.00           C
ATOM    123  CA  TRP   123      11.498   0.201  39.564  1.00 25.00           C
ATOM    124  CA  PHE   124      13.236  -3.140  40.090  1.00 25.00           C
ATOM    125  CA  GLY   125      14.005  -2.624  43.777  1.00 25.00           C
ATOM    126  CA  ILE   126      16.120  -0.929  46.462  1.00 25.00           C
ATOM    127  CA  ARG   127      15.613   0.073  50.037  1.00 25.00           C
ATOM    128  CA  HIS   128      18.147   2.897  50.081  1.00 25.00           C
ATOM    129  CA  VAL   129      21.106   4.024  47.907  1.00 25.00           C
ATOM    130  CA  TRP   130      24.684   5.150  48.764  1.00 25.00           C
ATOM    131  CA  LEU   131      26.054   8.402  47.348  1.00 25.00           C
ATOM    132  CA  GLY   132      29.777   8.904  47.930  1.00 25.00           C
ATOM    133  CA  THR   133      30.831  11.733  50.194  1.00 25.00           C
ATOM    134  CA  GLY   134      32.404  13.274  47.102  1.00 25.00           C
ATOM    135  CA  SER   135      30.942  15.654  44.522  1.00 25.00           C
ATOM    136  CA  ALA   136      27.436  14.222  44.676  1.00 25.00           C
ATOM    137  CA  ASP   137      24.931  17.004  44.062  1.00 25.00           C
ATOM    138  CA  VAL   138      22.199  15.194  46.082  1.00 25.00           C
ATOM    139  CA  PHE   139      21.103  18.568  47.452  1.00 25.00           C
ATOM    140  CA  SER   140      20.094  19.151  43.819  1.00 25.00           C
ATOM    141  CA  PRO   141      16.568  20.366  43.175  1.00 25.00           C
ATOM    142  CA  LYS   142      17.091  18.784  39.727  1.00 25.00           C
ATOM    143  CA  VAL   143      17.578  15.349  41.350  1.00 25.00           C
ATOM    144  CA  VAL   144      14.363  15.824  43.376  1.00 25.00           C
ATOM    145  CA  GLN   145      12.469  16.793  40.192  1.00 25.00           C
ATOM    146  CA  ALA   146      13.818  13.681  38.413  1.00 25.00           C
ATOM    147  CA  SER   147      12.721  11.492  41.357  1.00 25.00           C
ATOM    148  CA  MET   148       9.586  10.610  39.339  1.00 25.00           C
ATOM    149  CA  GLY   149       7.804  10.044  42.652  1.00 25.00           C
ATOM    150  CA  ALA   150       9.420   7.375  44.809  1.00 25.00           C
ATOM    151  CA  LEU   151      12.568   9.287  45.863  1.00 25.00           C
ATOM    152  CA  ALA   152      12.319   7.806  49.385  1.00 25.00           C
ATOM    153  CA  ARG   153      11.903   4.253  48.289  1.00 25.00           C
ATOM    154  CA  VAL   154      15.031   4.879  46.241  1.00 25.00           C
ATOM    155  CA  GLN   155      17.360   7.440  47.726  1.00 25.00           C
ATOM    156  CA  PRO   156      20.719   9.076  48.718  1.00 25.00           C
ATOM    157  CA  THR   157      22.940   9.115  51.767  1.00 25.00           C
ATOM    158  CA  PRO   158      25.206  11.991  52.568  1.00 25.00           C
ATOM    159  CA  LEU   159      28.057   9.968  54.177  1.00 25.00           C
ATOM    160  CA  LYS   160      31.495  11.017  55.465  1.00 25.00           C
ATOM    161  CA  ASN   161      34.050   8.508  54.064  1.00 25.00           C
ATOM    162  CA  THR   162      33.443   5.571  51.795  1.00 25.00           C
ATOM    163  CA  VAL   163      35.560   3.388  54.122  1.00 25.00           C
ATOM    164  CA  ASP   164      33.055   3.945  56.965  1.00 25.00           C
ATOM    165  CA  THR   165      30.167   2.982  54.642  1.00 25.00           C
ATOM    166  CA  LEU   166      32.034  -0.195  53.598  1.00 25.00           C
ATOM    167  CA  ALA   167      32.633  -1.082  57.275  1.00 25.00           C
ATOM    168  CA  TYR   168      28.917  -0.550  58.034  1.00 25.00           C
ATOM    169  CA  PHE   169      27.968  -2.800  55.085  1.00 25.00           C
ATOM    170  CA  ARG   170      30.372  -5.504  56.341  1.00 25.00           C
ATOM    171  CA  ARG   171      28.846  -5.267  59.847  1.00 25.00           C
ATOM    172  CA  GLN   172      27.894  -8.849  59.229  1.00 25.00           C
ATOM    173  CA  GLY   173      26.574  -9.325  55.650  1.00 25.00           C
ATOM    174  CA  ILE   174      27.520  -7.284  52.572  1.00 25.00           C
ATOM    175  CA  PRO   175      29.588  -7.444  49.381  1.00 25.00           C
ATOM    176  CA  VAL   176      30.286  -5.054  46.527  1.00 25.00           C
ATOM    177  CA  TYR   177      30.056  -4.496  42.766  1.00 25.00           C
ATOM    178  CA  GLY   178      32.300  -1.594  41.937  1.00 25.00           C
ATOM    179  CA  ALA   179      30.595  -0.707  38.719  1.00 25.00           C
ATOM    180  CA  PHE   180      31.387   1.109  35.481  1.00 25.00           C
ATOM    181  CA  LEU   181      30.815  -2.360  33.918  1.00 25.00           C
ATOM    182  CA  ASP   182      31.889  -5.621  32.321  1.00 25.00           C
ATOM    183  CA  GLY   183      32.731  -7.628  29.189  1.00 25.00           C
ATOM    184  CA  GLN   184      36.259  -7.558  30.605  1.00 25.00           C
ATOM    185  CA  SER   185      35.593  -8.176  34.300  1.00 25.00           C
ATOM    186  CA  LEU   186      33.782 -11.317  35.252  1.00 25.00           C
ATOM    187  CA  TYR   187      31.077  -9.063  36.703  1.00 25.00           C
ATOM    188  CA  GLU   188      28.130  -9.863  34.359  1.00 25.00           C
ATOM    189  CA  ALA   189      25.716 -12.560  33.107  1.00 25.00           C
ATOM    190  CA  PRO   190      27.477 -15.178  35.279  1.00 25.00           C
ATOM    191  CA  LEU   191      27.721 -13.405  38.586  1.00 25.00           C
ATOM    192  CA  PRO   192      24.839 -15.408  40.002  1.00 25.00           C
ATOM    193  CA  ASN   193      26.433 -14.581  43.352  1.00 25.00           C
ATOM    194  CA  PHE   194      25.188 -11.100  42.565  1.00 25.00           C
ATOM    195  CA  THR   195      22.575 -11.876  45.118  1.00 25.00           C
ATOM    196  CA  GLU   196      23.828 -12.472  48.627  1.00 25.00           C
ATOM    197  CA  PRO   197      23.989  -8.673  48.769  1.00 25.00           C
ATOM    198  CA  ALA   198      25.069  -5.020  48.411  1.00 25.00           C
ATOM    199  CA  ILE   199      25.982  -2.281  45.871  1.00 25.00           C
ATOM    200  CA  LEU   200      27.437  -0.222  43.024  1.00 25.00           C
ATOM    201  CA  VAL   201      29.680   2.830  42.655  1.00 25.00           C
ATOM    202  CA  LEU   202      28.020   3.631  39.335  1.00 25.00           C
ATOM    203  CA  GLY   203      29.063   7.034  37.933  1.00 25.00           C
ATOM    204  CA  SER   204      31.947   9.343  37.159  1.00 25.00           C
ATOM    205  CA  GLU   205      31.237  10.689  33.684  1.00 25.00           C
ATOM    206  CA  GLY   206      34.907  11.648  33.342  1.00 25.00           C
ATOM    207  CA  ARG   207      36.450   8.607  35.109  1.00 25.00           C
ATOM    208  CA  GLY   208      35.192   5.412  36.655  1.00 25.00           C
ATOM    209  CA  ILE   209      35.212   4.315  40.292  1.00 25.00           C
ATOM    210  CA  SER   210      38.518   5.175  42.048  1.00 25.00           C
ATOM    211  CA  PRO   211      40.223   3.617  45.070  1.00 25.00           C
ATOM    212  CA  GLU   212      38.773   2.341  48.377  1.00 25.00           C
ATOM    213  CA  VAL   213      35.891   0.664  46.493  1.00 25.00           C
ATOM    214  CA  ALA   214      38.383  -0.989  44.101  1.00 25.00           C
ATOM    215  CA  ALA   215      40.440  -2.248  47.077  1.00 25.00           C
ATOM    216  CA  GLU   216      37.274  -3.670  48.696  1.00 25.00           C
ATOM    217  CA  ILE   217      35.339  -4.746  45.573  1.00 25.00           C
ATOM    218  CA  THR   218      36.843  -7.912  44.095  1.00 25.00           C
ATOM    219  CA  ASP   219      37.225  -6.502  40.569  1.00 25.00           C
ATOM    220  CA  ARG   220      37.326  -2.944  39.353  1.00 25.00           C
ATOM    221  CA  LEU   221      34.767  -3.713  36.675  1.00 25.00           C
ATOM    222  CA  THR   222      34.936  -1.782  33.368  1.00 25.00           C
ATOM    223  CA  ILE   223      34.771  -2.168  29.653  1.00 25.00           C
ATOM    237  CA  LEU   237      28.989   6.007  28.682  1.00 25.00           C
ATOM    238  CA  ASN   238      26.891   8.992  29.886  1.00 25.00           C
ATOM    239  CA  VAL   239      25.710   7.414  33.145  1.00 25.00           C
ATOM    240  CA  ALA   240      21.944   6.728  32.981  1.00 25.00           C
ATOM    241  CA  ILE   241      22.564   3.753  30.652  1.00 25.00           C
ATOM    242  CA  ALA   242      25.209   2.386  33.060  1.00 25.00           C
ATOM    243  CA  THR   243      22.767   2.751  35.988  1.00 25.00           C
ATOM    244  CA  ALA   244      20.066   0.905  33.997  1.00 25.00           C
ATOM    245  CA  ILE   245      22.541  -1.904  33.195  1.00 25.00           C
ATOM    246  CA  LEU   246      23.480  -2.169  36.899  1.00 25.00           C
ATOM    247  CA  CYS   247      19.774  -2.353  37.850  1.00 25.00           C
ATOM    248  CA  SER   248      19.219  -5.110  35.250  1.00 25.00           C
ATOM    249  CA  GLU   249      22.212  -7.054  36.637  1.00 25.00           C
ATOM    250  CA  TRP   250      20.824  -6.707  40.189  1.00 25.00           C
ATOM    251  CA  ARG   251      17.408  -7.969  39.004  1.00 25.00           C
ATOM    252  CA  ARG   252      19.080 -10.963  37.298  1.00 25.00           C
ATOM    253  CA  ARG   253      20.078 -13.954  39.413  1.00 25.00           C
ATOM    254  CA  SER   254      18.047 -12.146  42.075  1.00 25.00           C
TER
END
