
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  140 (  140),  selected  140 , name T0379TS168_1-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  140 , name T0379_D1.pdb
# PARAMETERS: T0379TS168_1-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 207         4.26     4.26
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30       161 - 190         1.99     5.25
  LONGEST_CONTINUOUS_SEGMENT:    30       162 - 191         1.94     5.41
  LCS_AVERAGE:     14.34

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       173 - 189         0.97     5.44
  LCS_AVERAGE:      6.86

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      3    6  140     3    3   10   17   29   62   73   88   99  109  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I       2     I       2      3    9  140     3   10   18   30   49   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R       3     R       3      4   10  140     5   13   23   40   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N       4     N       4      4   10  140    11   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I       5     I       5      4   10  140     5   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     V       6     V       6      4   10  140     3   15   29   43   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F       7     F       7      6   10  140     4    7   12   27   50   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D       8     D       8      6   10  140     4   19   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L       9     L       9      6   10  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G      10     G      10      6   10  140     5   22   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G      11     G      11      6   10  140     4    8   26   38   54   69   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     V      12     V      12      6   10  140     4   11   27   40   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L      13     L      13      4    8  140     4    4   11   16   37   55   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I      14     I      14      4    8  140     4    4   11   13   23   46   67   92  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     H      15     H      15      3    8  140     1    3    4    8   11   19   28   40   70   87  103  114  120  125  131  135  139  139  140  140 
LCS_GDT     L      16     L      16      3    8  140     0    3   11   12   19   28   56   79   90  105  116  121  126  130  133  136  139  139  140  140 
LCS_GDT     L      84     L      84      3    8  140     1    3    7   22   36   49   62   79   90  103  113  119  126  130  133  136  139  139  140  140 
LCS_GDT     E      85     E      85      3    8  140     0    3    9   14   19   31   54   73   86   96  108  114  123  127  131  135  139  139  140  140 
LCS_GDT     E      86     E      86      3   18  140     3    4    5   14   27   49   62   79   96  108  116  121  126  130  133  136  139  139  140  140 
LCS_GDT     I      87     I      87     14   21  140     3    3   16   32   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S      88     S      88     14   21  140     3    3    4   18   29   64   83   93  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A      89     A      89     14   21  140    10   11   21   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E      90     E      90     14   21  140    10   11   26   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     K      91     K      91     14   21  140    10   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F      92     F      92     14   21  140    12   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D      93     D      93     14   21  140    10   11   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Y      94     Y      94     14   21  140    10   11   19   35   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I      95     I      95     14   21  140    10   11   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D      96     D      96     14   21  140    10   22   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S      97     S      97     14   21  140    10   11   16   35   53   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L      98     L      98     14   21  140    10   11   14   31   50   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R      99     R      99     14   21  140     3   11   20   35   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     100     P     100     14   21  140     3    6   13   43   55   72   83   95  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     101     D     101      8   21  140     3   11   23   40   55   72   83   96  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Y     102     Y     102      8   21  140     6   13   27   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     103     R     103      8   21  140     5   15   30   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     104     L     104      8   21  140     4   14   30   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     105     F     105      8   21  140     4    7   25   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     106     L     106      8   21  140     4    7   13   23   51   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     107     L     107      4   21  140     3    9   25   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S     108     S     108      3   19  140     3    5    7   18   29   40   54   69   97  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     109     N     109      3   18  140     2    5    9   15   21   35   54   77   97  106  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     110     T     110      4   18  140     0    6   10   15   26   37   53   77   97  110  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     111     N     111      4   18  140     0    3    4   15   17   26   42   57   72   93  101  122  126  129  133  136  139  139  140  140 
LCS_GDT     P     112     P     112     10   18  140     9    9   12   15   17   21   26   37   60   77   97  114  123  128  133  136  139  139  140  140 
LCS_GDT     Y     113     Y     113     10   18  140     9    9   12   15   17   24   43   67   88  104  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     V     114     V     114     10   18  140     9    9   12   15   26   47   79   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     115     L     115     10   18  140     9    9   12   15   17   25   46   71   97  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     116     D     116     10   18  140     9    9   12   15   17   24   40   66   87  101  115  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     117     L     117     10   18  140     9    9   12   15   24   51   76   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     118     A     118     10   18  140     9    9   12   33   51   69   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     M     119     M     119     10   18  140     9    9   12   15   34   57   79   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S     120     S     120     10   18  140     9    9   12   15   21   39   63   84  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     121     P     121     10   18  140     4    4    7   15   17   31   61   84  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     122     R     122      4   18  140     4    4    8   15   17   39   64   93  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     123     F     123      4   18  140     4    4   11   20   39   61   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     124     L     124      4   18  140     4    9   17   37   50   66   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     125     P     125      4   18  140     3    4    6   13   22   25   49   59   81   95  108  119  122  127  131  135  139  139  140  140 
LCS_GDT     S     126     S     126      5   18  140     3    8   12   24   37   57   70   86  102  109  116  123  126  130  133  136  139  139  140  140 
LCS_GDT     G     127     G     127      5    8  140     3    5    8   22   39   50   71   88  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     128     R     128      5    8  140     3   12   25   38   54   69   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     129     T     129      5    8  140     3    5    7   12   23   34   56   69   80   95  106  112  124  130  133  136  139  139  140  140 
LCS_GDT     L     130     L     130      5    8  140     3    5    7   14   25   39   56   73   87   99  111  121  126  130  133  136  139  139  140  140 
LCS_GDT     D     131     D     131      5    7  140     4    5    9   16   32   47   67   87   97  106  115  123  126  130  133  136  139  139  140  140 
LCS_GDT     S     132     S     132      5    7  140     4    7   12   29   48   65   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     133     F     133      5    7  140     4    5   19   37   55   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     134     F     134      5   10  140     4    8   14   35   47   66   83   91  101  109  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     135     D     135      3   10  140     6    8   14   35   47   62   80   91   97  106  115  123  126  130  133  136  139  139  140  140 
LCS_GDT     K     136     K     136      4   26  140     4   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     V     137     V     137      5   26  140     3    6   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Y     138     Y     138      5   26  140     3   20   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     139     A     139      5   26  140     4   18   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S     140     S     140      6   26  140     4    5    8   28   48   64   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     C     141     C     141      6   26  140     4    5   11   25   46   64   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Q     142     Q     142      6   26  140     4    6   12   27   46   64   80   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     M     143     M     143      6   26  140     3    5   12   25   42   61   80   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G     144     G     144      6   26  140     3    6   12   21   38   58   76   90  102  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     K     145     K     145      6   26  140     3    5   13   29   48   67   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Y     146     Y     146      4   26  140     3    4   18   32   50   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     K     147     K     147      4   26  140     0    8   18   31   50   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     148     P     148     13   26  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     149     N     149     14   26  140     3   16   30   43   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     150     E     150     14   26  140     9   15   27   43   55   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     151     D     151     14   26  140     9   15   30   43   55   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I     152     I     152     14   26  140     9   15   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     153     F     153     14   26  140     9   22   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     154     L     154     14   26  140    11   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     155     E     155     14   26  140     9   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     M     156     M     156     14   26  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I     157     I     157     14   26  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     158     A     158     14   26  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     159     D     159     14   26  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     S     160     S     160     14   26  140    10   19   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G     161     G     161     14   30  140     3    5   13   33   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     M     162     M     162     14   30  140     3    7   13   21   45   65   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     K     163     K     163      4   30  140     3   11   15   24   50   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     164     P     164      4   30  140     3   11   15   24   50   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     165     E     165      4   30  140     3    7   20   35   55   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     166     E     166     10   30  140     4   10   20   35   49   69   83   93  101  110  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     167     T     167     10   30  140     4   10   20   35   48   70   83   95  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     168     L     168     16   30  140     4   10   20   33   48   70   83   95  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     169     F     169     16   30  140     3    9   20   35   53   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I     170     I     170     16   30  140     6   15   30   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     171     D     171     16   30  140     3   15   29   43   56   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     172     D     172     16   30  140     6   13   29   43   55   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G     173     G     173     17   30  140     6   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     174     P     174     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     175     A     175     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     176     N     176     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     V     177     V     177     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     178     A     178     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     179     T     179     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     180     A     180     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     181     E     181     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     182     R     182     17   30  140    13   23   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     183     L     183     17   30  140     4   14   31   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     G     184     G     184     17   30  140     4   12   23   43   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     F     185     F     185     17   30  140     4   11   21   35   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     H     186     H     186     17   30  140     4    8   21   35   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     187     T     187     17   30  140     4   12   26   44   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Y     188     Y     188     17   30  140     4   12   20   35   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     C     189     C     189     17   30  140     4   12   27   41   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     190     P     190      4   30  140     3   10   16   28   48   70   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     D     191     D     191      4   30  140     3    8   19   38   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     192     N     192      3    7  140     3    3    9   19   29   42   54   69   95  102  115  122  126  130  133  136  139  139  140  140 
LCS_GDT     G     193     G     193      3    4  140     3    5    7   13   24   38   50   62   79   93  110  120  126  129  133  136  139  139  140  140 
LCS_GDT     E     194     E     194      3   13  140     3    4    8   21   29   43   54   88   99  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     N     195     N     195      3   13  140     3    4    4    7   22   30   41   52   65   80  100  108  121  125  129  132  136  139  140  140 
LCS_GDT     W     196     W     196     12   13  140    10   11   13   22   30   40   48   59   82   93  106  118  126  130  133  136  139  139  140  140 
LCS_GDT     I     197     I     197     12   13  140    10   10   13   22   30   40   48   61   82   97  112  123  126  130  133  136  139  139  140  140 
LCS_GDT     P     198     P     198     12   13  140    10   11   13   22   30   40   54   76   96  105  115  123  126  130  133  136  139  139  140  140 
LCS_GDT     A     199     A     199     12   13  140    10   11   15   22   30   40   54   78   96  105  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     I     200     I     200     12   13  140    10   11   15   22   30   42   62   88  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     T     201     T     201     12   13  140    10   11   15   22   30   50   72   90  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     202     R     202     12   13  140    10   11   15   22   32   55   77   93  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     203     L     203     12   13  140    10   11   15   22   32   55   77   93  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     L     204     L     204     12   13  140    10   11   15   23   44   66   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     R     205     R     205     12   13  140    10   11   15   27   49   67   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     E     206     E     206     12   13  140     3    6   13   31   49   68   82   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_GDT     Q     207     Q     207     12   13  140     2    8   25   40   56   72   83   96  103  111  117  123  126  130  133  136  139  139  140  140 
LCS_AVERAGE  LCS_A:  40.40  (   6.86   14.34  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     23     31     44     56     72     83     96    103    111    117    123    126    130    133    136    139    139    140    140 
GDT PERCENT_CA   9.29  16.43  22.14  31.43  40.00  51.43  59.29  68.57  73.57  79.29  83.57  87.86  90.00  92.86  95.00  97.14  99.29  99.29 100.00 100.00
GDT RMS_LOCAL    0.24   0.55   0.84   1.32   1.68   2.08   2.28   2.68   2.92   3.12   3.28   3.47   3.60   3.75   3.89   4.02   4.19   4.19   4.26   4.26
GDT RMS_ALL_CA   4.84   5.00   4.93   4.74   4.65   4.59   4.59   4.37   4.31   4.30   4.30   4.30   4.30   4.28   4.28   4.27   4.26   4.26   4.26   4.26

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          5.759
LGA    I       2      I       2          3.570
LGA    R       3      R       3          3.348
LGA    N       4      N       4          2.975
LGA    I       5      I       5          3.145
LGA    V       6      V       6          3.508
LGA    F       7      F       7          3.942
LGA    D       8      D       8          1.937
LGA    L       9      L       9          1.590
LGA    G      10      G      10          0.693
LGA    G      11      G      11          2.536
LGA    V      12      V      12          1.770
LGA    L      13      L      13          3.390
LGA    I      14      I      14          4.408
LGA    H      15      H      15          8.340
LGA    L      16      L      16          6.399
LGA    L      84      L      84          7.107
LGA    E      85      E      85          8.666
LGA    E      86      E      86          6.260
LGA    I      87      I      87          3.224
LGA    S      88      S      88          4.568
LGA    A      89      A      89          2.846
LGA    E      90      E      90          2.907
LGA    K      91      K      91          2.834
LGA    F      92      F      92          2.627
LGA    D      93      D      93          2.805
LGA    Y      94      Y      94          3.208
LGA    I      95      I      95          2.840
LGA    D      96      D      96          2.374
LGA    S      97      S      97          3.359
LGA    L      98      L      98          3.648
LGA    R      99      R      99          3.297
LGA    P     100      P     100          4.287
LGA    D     101      D     101          3.957
LGA    Y     102      Y     102          2.229
LGA    R     103      R     103          3.157
LGA    L     104      L     104          1.467
LGA    F     105      F     105          1.244
LGA    L     106      L     106          2.382
LGA    L     107      L     107          2.378
LGA    S     108      S     108          5.344
LGA    N     109      N     109          5.641
LGA    T     110      T     110          5.612
LGA    N     111      N     111          7.613
LGA    P     112      P     112          8.067
LGA    Y     113      Y     113          6.118
LGA    V     114      V     114          3.869
LGA    L     115      L     115          5.251
LGA    D     116      D     116          6.200
LGA    L     117      L     117          3.997
LGA    A     118      A     118          1.974
LGA    M     119      M     119          3.711
LGA    S     120      S     120          5.098
LGA    P     121      P     121          4.986
LGA    R     122      R     122          4.343
LGA    F     123      F     123          3.435
LGA    L     124      L     124          3.487
LGA    P     125      P     125          8.428
LGA    S     126      S     126          5.832
LGA    G     127      G     127          4.857
LGA    R     128      R     128          2.160
LGA    T     129      T     129          8.142
LGA    L     130      L     130          6.747
LGA    D     131      D     131          5.660
LGA    S     132      S     132          3.048
LGA    F     133      F     133          1.526
LGA    F     134      F     134          5.289
LGA    D     135      D     135          6.067
LGA    K     136      K     136          2.240
LGA    V     137      V     137          2.747
LGA    Y     138      Y     138          2.372
LGA    A     139      A     139          0.644
LGA    S     140      S     140          2.714
LGA    C     141      C     141          3.120
LGA    Q     142      Q     142          3.365
LGA    M     143      M     143          3.863
LGA    G     144      G     144          4.791
LGA    K     145      K     145          3.394
LGA    Y     146      Y     146          3.503
LGA    K     147      K     147          3.651
LGA    P     148      P     148          1.073
LGA    N     149      N     149          0.995
LGA    E     150      E     150          2.470
LGA    D     151      D     151          2.074
LGA    I     152      I     152          1.919
LGA    F     153      F     153          1.858
LGA    L     154      L     154          1.677
LGA    E     155      E     155          1.731
LGA    M     156      M     156          1.679
LGA    I     157      I     157          1.524
LGA    A     158      A     158          1.540
LGA    D     159      D     159          1.870
LGA    S     160      S     160          1.416
LGA    G     161      G     161          2.612
LGA    M     162      M     162          3.187
LGA    K     163      K     163          3.842
LGA    P     164      P     164          3.513
LGA    E     165      E     165          3.768
LGA    E     166      E     166          4.952
LGA    T     167      T     167          4.588
LGA    L     168      L     168          4.455
LGA    F     169      F     169          3.779
LGA    I     170      I     170          3.185
LGA    D     171      D     171          3.522
LGA    D     172      D     172          3.921
LGA    G     173      G     173          2.579
LGA    P     174      P     174          2.088
LGA    A     175      A     175          1.710
LGA    N     176      N     176          1.414
LGA    V     177      V     177          1.723
LGA    A     178      A     178          1.638
LGA    T     179      T     179          1.493
LGA    A     180      A     180          1.526
LGA    E     181      E     181          1.654
LGA    R     182      R     182          1.497
LGA    L     183      L     183          2.234
LGA    G     184      G     184          2.744
LGA    F     185      F     185          3.428
LGA    H     186      H     186          3.221
LGA    T     187      T     187          2.065
LGA    Y     188      Y     188          2.753
LGA    C     189      C     189          1.771
LGA    P     190      P     190          3.838
LGA    D     191      D     191          2.671
LGA    N     192      N     192          7.883
LGA    G     193      G     193          8.740
LGA    E     194      E     194          6.342
LGA    N     195      N     195         10.814
LGA    W     196      W     196          8.620
LGA    I     197      I     197          7.776
LGA    P     198      P     198          7.537
LGA    A     199      A     199          7.391
LGA    I     200      I     200          6.017
LGA    T     201      T     201          5.713
LGA    R     202      R     202          5.773
LGA    L     203      L     203          5.329
LGA    L     204      L     204          3.967
LGA    R     205      R     205          3.624
LGA    E     206      E     206          3.616
LGA    Q     207      Q     207          1.174

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  140  140    4.0     96    2.68    53.393    46.537     3.454

LGA_LOCAL      RMSD =  2.679  Number of atoms =   96  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.301  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  4.262  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.803388 * X  +  -0.111691 * Y  +  -0.584887 * Z  +  59.744698
  Y_new =   0.023632 * X  +  -0.975496 * Y  +   0.218743 * Z  +  14.593646
  Z_new =  -0.594987 * X  +  -0.189558 * Y  +  -0.781062 * Z  +  10.431743 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.903503    0.238089  [ DEG:  -166.3585     13.6415 ]
  Theta =   0.637249    2.504344  [ DEG:    36.5117    143.4883 ]
  Phi   =   0.029408   -3.112185  [ DEG:     1.6849   -178.3151 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS168_1-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS168_1-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  140  140   4.0   96   2.68  46.537     4.26
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS168_1-D1
PFRMAT TS
TARGET T0379
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      50.234  23.106 -11.948  1.00 25.00           C
ATOM      2  CA  ILE     2      50.104  21.160  -8.653  1.00 25.00           C
ATOM      3  CA  ARG     3      51.497  22.828  -5.533  1.00 25.00           C
ATOM      4  CA  ASN     4      54.055  20.342  -4.181  1.00 25.00           C
ATOM      5  CA  ILE     5      56.987  18.923  -2.248  1.00 25.00           C
ATOM      6  CA  VAL     6      56.835  17.924   1.418  1.00 25.00           C
ATOM      7  CA  PHE     7      57.268  18.882   5.037  1.00 25.00           C
ATOM      8  CA  ASP     8      57.560  15.404   6.505  1.00 25.00           C
ATOM      9  CA  LEU     9      60.132  15.445   9.266  1.00 25.00           C
ATOM     10  CA  GLY    10      61.492  11.885   9.729  1.00 25.00           C
ATOM     11  CA  GLY    11      63.672  12.681   6.645  1.00 25.00           C
ATOM     12  CA  VAL    12      63.034  14.253   3.197  1.00 25.00           C
ATOM     13  CA  LEU    13      61.777  17.871   3.380  1.00 25.00           C
ATOM     14  CA  ILE    14      63.423  18.286   6.760  1.00 25.00           C
ATOM     15  CA  HIS    15      64.957  19.380  10.073  1.00 25.00           C
ATOM     16  CA  LEU    16      65.542  15.633  10.590  1.00 25.00           C
ATOM     84  CA  LEU    84      67.765  20.158  15.775  1.00 25.00           C
ATOM     85  CA  GLU    85      70.267  20.987  12.995  1.00 25.00           C
ATOM     86  CA  GLU    86      73.566  20.488  11.209  1.00 25.00           C
ATOM     87  CA  ILE    87      71.533  17.995   9.129  1.00 25.00           C
ATOM     88  CA  SER    88      73.408  17.227   5.889  1.00 25.00           C
ATOM     89  CA  ALA    89      72.340  20.769   4.781  1.00 25.00           C
ATOM     90  CA  GLU    90      71.370  18.884   1.593  1.00 25.00           C
ATOM     91  CA  LYS    91      67.908  18.143   3.054  1.00 25.00           C
ATOM     92  CA  PHE    92      67.471  21.840   3.955  1.00 25.00           C
ATOM     93  CA  ASP    93      68.474  22.850   0.400  1.00 25.00           C
ATOM     94  CA  TYR    94      65.953  20.356  -1.047  1.00 25.00           C
ATOM     95  CA  ILE    95      63.215  21.766   1.230  1.00 25.00           C
ATOM     96  CA  ASP    96      64.077  25.323   0.105  1.00 25.00           C
ATOM     97  CA  SER    97      63.906  24.232  -3.562  1.00 25.00           C
ATOM     98  CA  LEU    98      60.493  22.607  -2.944  1.00 25.00           C
ATOM     99  CA  ARG    99      59.239  25.817  -1.272  1.00 25.00           C
ATOM    100  CA  PRO   100      60.162  28.310  -4.005  1.00 25.00           C
ATOM    101  CA  ASP   101      56.833  29.890  -4.956  1.00 25.00           C
ATOM    102  CA  TYR   102      55.500  26.373  -4.551  1.00 25.00           C
ATOM    103  CA  ARG   103      54.161  26.056  -0.989  1.00 25.00           C
ATOM    104  CA  LEU   104      54.392  22.748   0.843  1.00 25.00           C
ATOM    105  CA  PHE   105      52.536  20.099   2.878  1.00 25.00           C
ATOM    106  CA  LEU   106      52.522  17.294   5.517  1.00 25.00           C
ATOM    107  CA  LEU   107      52.500  14.345   7.974  1.00 25.00           C
ATOM    108  CA  SER   108      50.781  11.945   5.558  1.00 25.00           C
ATOM    109  CA  ASN   109      54.250  10.579   6.490  1.00 25.00           C
ATOM    110  CA  THR   110      56.036  11.008   9.821  1.00 25.00           C
ATOM    111  CA  ASN   111      52.884  10.987  11.963  1.00 25.00           C
ATOM    112  CA  PRO   112      54.007  14.392  13.144  1.00 25.00           C
ATOM    113  CA  TYR   113      56.080  15.173  16.269  1.00 25.00           C
ATOM    114  CA  VAL   114      58.993  16.341  14.075  1.00 25.00           C
ATOM    115  CA  LEU   115      56.620  18.584  12.075  1.00 25.00           C
ATOM    116  CA  ASP   116      55.241  20.066  15.326  1.00 25.00           C
ATOM    117  CA  LEU   117      58.805  20.737  16.560  1.00 25.00           C
ATOM    118  CA  ALA   118      59.656  22.451  13.243  1.00 25.00           C
ATOM    119  CA  MET   119      56.508  24.615  13.524  1.00 25.00           C
ATOM    120  CA  SER   120      57.461  25.578  17.106  1.00 25.00           C
ATOM    121  CA  PRO   121      60.989  26.510  15.943  1.00 25.00           C
ATOM    122  CA  ARG   122      63.896  24.214  15.282  1.00 25.00           C
ATOM    123  CA  PHE   123      64.014  25.516  11.725  1.00 25.00           C
ATOM    124  CA  LEU   124      66.699  27.841  12.993  1.00 25.00           C
ATOM    125  CA  PRO   125      64.787  30.420  15.107  1.00 25.00           C
ATOM    126  CA  SER   126      67.013  33.110  13.514  1.00 25.00           C
ATOM    127  CA  GLY   127      64.775  34.279  10.669  1.00 25.00           C
ATOM    128  CA  ARG   128      64.588  31.034   8.638  1.00 25.00           C
ATOM    129  CA  THR   129      64.275  31.031   4.840  1.00 25.00           C
ATOM    130  CA  LEU   130      62.098  27.950   4.688  1.00 25.00           C
ATOM    131  CA  ASP   131      59.749  30.056   6.858  1.00 25.00           C
ATOM    132  CA  SER   132      56.846  29.323   4.470  1.00 25.00           C
ATOM    133  CA  PHE   133      57.635  25.579   4.620  1.00 25.00           C
ATOM    134  CA  PHE   134      57.696  25.720   8.446  1.00 25.00           C
ATOM    135  CA  ASP   135      54.318  27.523   8.458  1.00 25.00           C
ATOM    136  CA  LYS   136      52.862  24.864   6.117  1.00 25.00           C
ATOM    137  CA  VAL   137      54.657  22.025   8.009  1.00 25.00           C
ATOM    138  CA  TYR   138      51.384  20.652   9.360  1.00 25.00           C
ATOM    139  CA  ALA   139      50.567  17.704  11.627  1.00 25.00           C
ATOM    140  CA  SER   140      48.865  14.377  10.681  1.00 25.00           C
ATOM    141  CA  CYS   141      48.787  13.648  14.421  1.00 25.00           C
ATOM    142  CA  GLN   142      46.034  16.246  14.535  1.00 25.00           C
ATOM    143  CA  MET   143      43.808  13.306  13.655  1.00 25.00           C
ATOM    144  CA  GLY   144      44.169   9.588  14.305  1.00 25.00           C
ATOM    145  CA  LYS   145      47.022   9.610  11.823  1.00 25.00           C
ATOM    146  CA  TYR   146      49.584   6.923  12.693  1.00 25.00           C
ATOM    147  CA  LYS   147      51.607   5.846   9.691  1.00 25.00           C
ATOM    148  CA  PRO   148      48.337   6.653   7.822  1.00 25.00           C
ATOM    149  CA  ASN   149      44.717   6.055   6.867  1.00 25.00           C
ATOM    150  CA  GLU   150      44.995   8.678   4.073  1.00 25.00           C
ATOM    151  CA  ASP   151      43.022  10.824   6.556  1.00 25.00           C
ATOM    152  CA  ILE   152      46.028  13.162   6.963  1.00 25.00           C
ATOM    153  CA  PHE   153      46.340  13.463   3.158  1.00 25.00           C
ATOM    154  CA  LEU   154      42.608  14.279   2.891  1.00 25.00           C
ATOM    155  CA  GLU   155      42.974  16.954   5.608  1.00 25.00           C
ATOM    156  CA  MET   156      45.962  18.467   3.751  1.00 25.00           C
ATOM    157  CA  ILE   157      43.941  18.526   0.498  1.00 25.00           C
ATOM    158  CA  ALA   158      41.037  20.251   2.305  1.00 25.00           C
ATOM    159  CA  ASP   159      43.449  22.852   3.748  1.00 25.00           C
ATOM    160  CA  SER   160      44.897  23.483   0.259  1.00 25.00           C
ATOM    161  CA  GLY   161      42.172  25.024  -1.971  1.00 25.00           C
ATOM    162  CA  MET   162      44.177  23.195  -4.590  1.00 25.00           C
ATOM    163  CA  LYS   163      41.611  20.433  -3.905  1.00 25.00           C
ATOM    164  CA  PRO   164      43.098  16.988  -4.287  1.00 25.00           C
ATOM    165  CA  GLU   165      45.864  17.181  -6.928  1.00 25.00           C
ATOM    166  CA  GLU   166      48.206  18.837  -4.390  1.00 25.00           C
ATOM    167  CA  THR   167      49.778  17.041  -1.450  1.00 25.00           C
ATOM    168  CA  LEU   168      52.948  14.943  -1.072  1.00 25.00           C
ATOM    169  CA  PHE   169      54.520  12.531   1.461  1.00 25.00           C
ATOM    170  CA  ILE   170      58.296  12.399   2.086  1.00 25.00           C
ATOM    171  CA  ASP   171      59.047  10.055   4.990  1.00 25.00           C
ATOM    172  CA  ASP   172      60.518   7.037   6.813  1.00 25.00           C
ATOM    173  CA  GLY   173      57.209   5.083   7.188  1.00 25.00           C
ATOM    174  CA  PRO   174      56.097   2.761   4.367  1.00 25.00           C
ATOM    175  CA  ALA   175      52.497   2.850   5.671  1.00 25.00           C
ATOM    176  CA  ASN   176      52.334   6.623   5.034  1.00 25.00           C
ATOM    177  CA  VAL   177      53.647   6.103   1.475  1.00 25.00           C
ATOM    178  CA  ALA   178      51.012   3.392   0.871  1.00 25.00           C
ATOM    179  CA  THR   179      48.271   5.733   2.163  1.00 25.00           C
ATOM    180  CA  ALA   180      49.516   8.513  -0.159  1.00 25.00           C
ATOM    181  CA  GLU   181      49.482   6.086  -3.122  1.00 25.00           C
ATOM    182  CA  ARG   182      45.906   5.029  -2.247  1.00 25.00           C
ATOM    183  CA  LEU   183      44.439   8.295  -0.908  1.00 25.00           C
ATOM    184  CA  GLY   184      44.496  10.598  -3.935  1.00 25.00           C
ATOM    185  CA  PHE   185      47.320  12.716  -2.519  1.00 25.00           C
ATOM    186  CA  HIS   186      50.264  11.332  -4.433  1.00 25.00           C
ATOM    187  CA  THR   187      53.590  10.227  -3.074  1.00 25.00           C
ATOM    188  CA  TYR   188      57.277  11.294  -2.748  1.00 25.00           C
ATOM    189  CA  CYS   189      59.281   8.568  -1.105  1.00 25.00           C
ATOM    190  CA  PRO   190      60.444   6.375   1.772  1.00 25.00           C
ATOM    191  CA  ASP   191      63.439   4.131   2.535  1.00 25.00           C
ATOM    192  CA  ASN   192      63.648   2.717  -0.917  1.00 25.00           C
ATOM    193  CA  GLY   193      63.719   6.302  -2.111  1.00 25.00           C
ATOM    194  CA  GLU   194      65.669   7.844  -5.024  1.00 25.00           C
ATOM    195  CA  ASN   195      63.516   5.900  -7.525  1.00 25.00           C
ATOM    196  CA  TRP   196      60.337   7.121  -5.775  1.00 25.00           C
ATOM    197  CA  ILE   197      61.615  10.727  -5.913  1.00 25.00           C
ATOM    198  CA  PRO   198      62.373  10.342  -9.648  1.00 25.00           C
ATOM    199  CA  ALA   199      58.853   8.955 -10.244  1.00 25.00           C
ATOM    200  CA  ILE   200      57.340  11.910  -8.334  1.00 25.00           C
ATOM    201  CA  THR   201      59.407  14.358 -10.432  1.00 25.00           C
ATOM    202  CA  ARG   202      58.224  12.640 -13.646  1.00 25.00           C
ATOM    203  CA  LEU   203      54.589  12.876 -12.463  1.00 25.00           C
ATOM    204  CA  LEU   204      55.056  16.598 -11.692  1.00 25.00           C
ATOM    205  CA  ARG   205      56.551  17.157 -15.175  1.00 25.00           C
ATOM    206  CA  GLU   206      53.587  15.328 -16.767  1.00 25.00           C
ATOM    207  CA  GLN   207      53.205  18.538 -18.728  1.00 25.00           C
TER
END
