
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  140 (  140),  selected  140 , name T0379TS168_5-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  140 , name T0379_D1.pdb
# PARAMETERS: T0379TS168_5-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 207         4.94     4.94
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40       150 - 189         1.98     5.63
  LCS_AVERAGE:     16.36

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       172 - 189         0.97     5.48
  LCS_AVERAGE:      6.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      4    6  140     3    3    7   12   18   52   64   80   96  107  111  115  119  123  126  129  131  133  137  138 
LCS_GDT     I       2     I       2      4    9  140     3    3    6   13   37   57   75   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     R       3     R       3      4    9  140     3   19   30   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N       4     N       4      4    9  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     I       5     I       5      4    9  140     9   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     V       6     V       6      4    9  140     6   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F       7     F       7      5    9  140     4    6   14   24   48   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D       8     D       8      5    9  140     4   13   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L       9     L       9      5    9  140     4   15   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G      10     G      10      5    9  140     4   12   32   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G      11     G      11      5    9  140     0    4    7   17   44   62   76   89   99  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     V      12     V      12      5    6  140     3    3    7   16   39   61   76   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L      13     L      13      4    6  140     3    3    4    6   16   25   34   50   62   80   94  110  117  123  126  129  131  133  137  138 
LCS_GDT     I      14     I      14      4    6  140     3    3    4    8   10   13   30   35   52   64   78   97  113  121  125  127  131  133  137  138 
LCS_GDT     H      15     H      15      3    6  140     1    3    4    8   16   25   34   50   55   73   85  104  115  121  125  127  131  133  137  138 
LCS_GDT     L      16     L      16      3    6  140     0    3    4    7   11   18   34   50   55   73   85  104  115  121  125  127  131  133  137  138 
LCS_GDT     L      84     L      84      4    6  140     1    3   18   36   53   68   81   89   97  104  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E      85     E      85      4    6  140     0    3    4    5   11   18   31   42   49   82   91  106  115  119  123  127  131  133  137  138 
LCS_GDT     E      86     E      86      4   19  140     3    3    4    5    7   28   31   42   76   92  104  111  116  121  125  127  131  133  137  138 
LCS_GDT     I      87     I      87      4   21  140     5   13   27   47   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S      88     S      88     14   21  140     3   10   13   39   63   71   81   90   99  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A      89     A      89     14   21  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E      90     E      90     14   21  140    11   12   33   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     K      91     K      91     14   21  140    11   13   31   43   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F      92     F      92     14   21  140    11   20   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D      93     D      93     14   28  140    11   12   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y      94     Y      94     14   28  140    11   12   23   43   62   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     I      95     I      95     14   28  140    11   13   31   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D      96     D      96     14   28  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S      97     S      97     14   28  140    11   12   23   43   62   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L      98     L      98     14   28  140    11   12   18   43   58   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     R      99     R      99     14   28  140    11   12   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     100     P     100     14   28  140     3   12   33   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     101     D     101     14   28  140     6   19   30   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y     102     Y     102     14   28  140     4   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     103     R     103      8   28  140     6   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     104     L     104      8   28  140     6   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     105     F     105      5   28  140     3    7   17   39   58   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     106     L     106      5   28  140     3    7   12   18   30   53   77   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     107     L     107      4   28  140     3    7   17   45   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S     108     S     108      4   28  140     3    6   14   21   31   54   76   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N     109     N     109      4   28  140     3    4    9   19   31   45   72   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     110     T     110     11   28  140     3    4    7   13   29   43   67   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N     111     N     111     11   28  140    10   10   13   20   30   41   52   61   86  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     112     P     112     11   28  140    10   10   13   20   30   41   52   62   85  106  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y     113     Y     113     11   28  140    10   10   14   21   30   41   52   67   93  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     V     114     V     114     11   28  140    10   10   14   21   30   41   52   75   99  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     115     L     115     11   28  140    10   10   14   21   30   41   52   75  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     116     D     116     11   28  140    10   10   14   21   30   41   52   75   99  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     117     L     117     11   28  140    10   10   14   21   30   41   54   84  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     118     A     118     11   28  140    10   10   14   21   30   47   75   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     M     119     M     119     11   28  140    10   10   14   21   30   48   75   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S     120     S     120     11   28  140    10   10   14   21   30   41   70   84  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     121     P     121     11   26  140     3    3    5   17   23   34   44   60   78  100  109  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     122     R     122      4   12  140     3    3    5    5    7   12   18   36   52   72  109  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     123     F     123      4    8  140     3    3    5    7   11   17   25   35   49   70   90  111  115  123  125  128  131  133  137  138 
LCS_GDT     L     124     L     124      4    8  140     3    3    5    8   12   19   24   34   43   55   74   87  103  116  120  125  131  133  134  137 
LCS_GDT     P     125     P     125      5    8  140     4    5    5   11   14   21   31   40   53   66   85  101  114  119  123  127  131  133  134  138 
LCS_GDT     S     126     S     126      5    8  140     4    5   12   23   30   42   70   88   99  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G     127     G     127      5    8  140     4    5   17   31   50   68   78   89  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     128     R     128      5    8  140     4   13   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     129     T     129      7    8  140     4    6    7   20   38   51   65   80   93   99  106  113  119  123  126  129  131  133  137  138 
LCS_GDT     L     130     L     130      7    8  140     4    7   16   38   53   68   81   89  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     131     D     131      7    7  140     4    6   27   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S     132     S     132      7    7  140     4    6   13   27   48   68   80   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     133     F     133      7    7  140     3    6   11   24   48   68   79   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     134     F     134      7    7  140     3   13   23   34   47   62   76   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     135     D     135      7    7  140     3   13   23   38   50   62   77   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     K     136     K     136      4    7  140     4    9   25   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     V     137     V     137      4    7  140     3    7   17   31   50   68   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y     138     Y     138      4    7  140     3   11   26   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     139     A     139      4    7  140     3    5   12   38   58   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S     140     S     140      4    7  140     3    4    6   15   32   56   74   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     C     141     C     141      4    7  140     3    7   14   21   30   41   57   86  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Q     142     Q     142      3    5  140     3    3    4    9   11   19   32   49   80   93  108  115  119  123  126  129  131  133  137  138 
LCS_GDT     M     143     M     143      3    5  140     3    3    4    5   10   13   24   34   48   67   80  101  116  121  125  128  131  133  137  138 
LCS_GDT     G     144     G     144      3    5  140     3    4   10   15   29   40   52   63   84  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     K     145     K     145      3    6  140     3    3    4    8   11   22   52   60   81   98  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y     146     Y     146      3    6  140     3    3    4    8   11   37   52   66   85  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     K     147     K     147      3   18  140     3    8   18   33   47   68   79   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     148     P     148      3   18  140     3    6   27   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N     149     N     149     12   18  140     3    3   11   37   53   69   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     150     E     150     12   40  140    10   16   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     151     D     151     12   40  140    10   14   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     I     152     I     152     12   40  140    10   13   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     153     F     153     12   40  140    10   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     154     L     154     12   40  140    10   16   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     155     E     155     12   40  140    10   16   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     M     156     M     156     12   40  140    10   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     I     157     I     157     12   40  140    10   15   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     158     A     158     12   40  140    10   15   22   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     159     D     159     12   40  140    10   15   26   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     S     160     S     160     12   40  140     5   15   26   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G     161     G     161     12   40  140     3    6   14   18   45   67   78   84   96  103  110  116  119  123  126  129  131  133  137  138 
LCS_GDT     M     162     M     162      4   40  140     3    5   12   18   34   63   80   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     K     163     K     163      4   40  140     3    9   18   34   51   69   80   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     164     P     164      5   40  140     4   11   20   34   52   69   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     165     E     165      6   40  140     4   13   30   46   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     166     E     166      6   40  140     4   10   21   41   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     167     T     167      9   40  140     4   13   23   38   50   67   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     168     L     168      9   40  140     3    9   21   34   56   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     169     F     169      9   40  140     3   10   23   43   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     I     170     I     170     14   40  140     3   10   23   43   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     171     D     171     16   40  140     3   14   31   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     172     D     172     18   40  140     6   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G     173     G     173     18   40  140     8   21   30   46   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     174     P     174     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     175     A     175     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N     176     N     176     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     V     177     V     177     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     178     A     178     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     179     T     179     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     A     180     A     180     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     181     E     181     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     182     R     182     18   40  140    11   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     183     L     183     18   40  140     7   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G     184     G     184     18   40  140     3   13   33   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     F     185     F     185     18   40  140     5   17   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     H     186     H     186     18   40  140     5   15   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     187     T     187     18   40  140     5   13   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     Y     188     Y     188     18   40  140     4    9   24   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     C     189     C     189     18   40  140     5   17   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     P     190     P     190      7   31  140     4    8   23   41   53   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     D     191     D     191      5   31  140     3    6   17   40   53   69   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     N     192     N     192      4   30  140     3    6    9   24   35   45   65   87   97  106  111  116  119  123  126  129  131  133  137  138 
LCS_GDT     G     193     G     193      4    6  140     3    4    4   10   22   32   44   57   66   80   96  108  116  121  123  129  130  133  137  138 
LCS_GDT     E     194     E     194      4   13  140     3    4   10   17   24   38   48   67   81   95  106  113  117  123  126  129  131  133  137  138 
LCS_GDT     N     195     N     195      4   13  140     3    4    4    9   13   22   35   41   47   57   70   83   91  107  118  121  126  129  132  133 
LCS_GDT     W     196     W     196     12   13  140    10   11   14   17   21   35   46   53   61   80   88   94  115  120  123  127  130  133  137  138 
LCS_GDT     I     197     I     197     12   13  140    10   11   14   17   21   35   46   53   64   80   89  106  115  120  124  129  130  133  137  138 
LCS_GDT     P     198     P     198     12   13  140    10   11   14   17   26   36   46   56   69   81   89  106  115  120  124  129  130  133  137  138 
LCS_GDT     A     199     A     199     12   13  140    10   11   14   18   26   36   46   63   72   84  103  113  117  123  126  129  130  133  137  138 
LCS_GDT     I     200     I     200     12   13  140    10   11   14   18   26   42   55   70   94  105  109  116  119  123  126  129  131  133  137  138 
LCS_GDT     T     201     T     201     12   13  140    10   11   14   18   29   42   55   70   89   99  109  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     202     R     202     12   13  140    10   11   14   18   30   48   61   83   94  105  109  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     203     L     203     12   13  140    10   11   14   19   35   59   80   88   98  106  110  116  119  123  126  129  131  133  137  138 
LCS_GDT     L     204     L     204     12   13  140    10   11   14   23   50   68   81   89  100  106  110  116  119  123  126  129  131  133  137  138 
LCS_GDT     R     205     R     205     12   13  140    10   11   14   26   53   68   81   89  100  106  110  116  119  123  126  129  131  133  137  138 
LCS_GDT     E     206     E     206     12   13  140     3    7   17   36   55   69   81   90  100  106  110  116  119  123  126  129  131  133  137  138 
LCS_GDT     Q     207     Q     207     12   13  140     5   22   34   48   63   71   81   91  100  107  111  116  119  123  126  129  131  133  137  138 
LCS_AVERAGE  LCS_A:  41.04  (   6.76   16.36  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     22     34     48     63     71     81     91    100    107    111    116    119    123    126    129    131    133    137    138 
GDT PERCENT_CA   7.86  15.71  24.29  34.29  45.00  50.71  57.86  65.00  71.43  76.43  79.29  82.86  85.00  87.86  90.00  92.14  93.57  95.00  97.86  98.57
GDT RMS_LOCAL    0.30   0.69   1.08   1.37   1.67   1.85   2.12   2.63   2.93   3.31   3.46   3.57   3.66   3.85   4.00   4.19   4.34   4.44   4.70   4.77
GDT RMS_ALL_CA   5.70   5.60   5.58   5.62   5.57   5.52   5.48   5.22   5.13   5.11   5.10   5.02   5.01   4.99   4.97   4.98   4.98   4.96   4.95   4.95

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          4.924
LGA    I       2      I       2          3.572
LGA    R       3      R       3          1.633
LGA    N       4      N       4          2.324
LGA    I       5      I       5          1.882
LGA    V       6      V       6          2.574
LGA    F       7      F       7          3.668
LGA    D       8      D       8          2.006
LGA    L       9      L       9          1.921
LGA    G      10      G      10          1.225
LGA    G      11      G      11          4.200
LGA    V      12      V      12          3.740
LGA    L      13      L      13          7.113
LGA    I      14      I      14          9.407
LGA    H      15      H      15          9.693
LGA    L      16      L      16          9.638
LGA    L      84      L      84          5.157
LGA    E      85      E      85          9.744
LGA    E      86      E      86          8.329
LGA    I      87      I      87          2.452
LGA    S      88      S      88          4.115
LGA    A      89      A      89          1.929
LGA    E      90      E      90          2.792
LGA    K      91      K      91          3.543
LGA    F      92      F      92          2.386
LGA    D      93      D      93          2.287
LGA    Y      94      Y      94          3.353
LGA    I      95      I      95          2.557
LGA    D      96      D      96          2.003
LGA    S      97      S      97          3.570
LGA    L      98      L      98          3.367
LGA    R      99      R      99          2.582
LGA    P     100      P     100          3.669
LGA    D     101      D     101          1.009
LGA    Y     102      Y     102          1.986
LGA    R     103      R     103          0.951
LGA    L     104      L     104          1.042
LGA    F     105      F     105          2.017
LGA    L     106      L     106          3.652
LGA    L     107      L     107          0.936
LGA    S     108      S     108          3.358
LGA    N     109      N     109          3.948
LGA    T     110      T     110          3.996
LGA    N     111      N     111          6.619
LGA    P     112      P     112          7.040
LGA    Y     113      Y     113          6.699
LGA    V     114      V     114          5.688
LGA    L     115      L     115          5.360
LGA    D     116      D     116          5.862
LGA    L     117      L     117          5.439
LGA    A     118      A     118          3.874
LGA    M     119      M     119          3.915
LGA    S     120      S     120          5.193
LGA    P     121      P     121          7.349
LGA    R     122      R     122          7.377
LGA    F     123      F     123          8.614
LGA    L     124      L     124         11.424
LGA    P     125      P     125         10.748
LGA    S     126      S     126          5.795
LGA    G     127      G     127          4.411
LGA    R     128      R     128          2.351
LGA    T     129      T     129          6.790
LGA    L     130      L     130          4.237
LGA    D     131      D     131          3.363
LGA    S     132      S     132          3.788
LGA    F     133      F     133          2.876
LGA    F     134      F     134          3.952
LGA    D     135      D     135          3.561
LGA    K     136      K     136          2.668
LGA    V     137      V     137          3.064
LGA    Y     138      Y     138          2.934
LGA    A     139      A     139          1.994
LGA    S     140      S     140          3.599
LGA    C     141      C     141          5.252
LGA    Q     142      Q     142          7.996
LGA    M     143      M     143          9.252
LGA    G     144      G     144          7.478
LGA    K     145      K     145          7.682
LGA    Y     146      Y     146          6.398
LGA    K     147      K     147          3.219
LGA    P     148      P     148          3.360
LGA    N     149      N     149          2.511
LGA    E     150      E     150          2.116
LGA    D     151      D     151          2.493
LGA    I     152      I     152          2.304
LGA    F     153      F     153          1.731
LGA    L     154      L     154          2.196
LGA    E     155      E     155          2.583
LGA    M     156      M     156          2.180
LGA    I     157      I     157          2.941
LGA    A     158      A     158          3.764
LGA    D     159      D     159          3.955
LGA    S     160      S     160          3.702
LGA    G     161      G     161          5.201
LGA    M     162      M     162          3.575
LGA    K     163      K     163          3.018
LGA    P     164      P     164          2.678
LGA    E     165      E     165          2.715
LGA    E     166      E     166          3.580
LGA    T     167      T     167          3.636
LGA    L     168      L     168          3.565
LGA    F     169      F     169          3.367
LGA    I     170      I     170          3.576
LGA    D     171      D     171          3.872
LGA    D     172      D     172          2.488
LGA    G     173      G     173          2.716
LGA    P     174      P     174          3.103
LGA    A     175      A     175          2.932
LGA    N     176      N     176          2.363
LGA    V     177      V     177          2.653
LGA    A     178      A     178          2.804
LGA    T     179      T     179          2.631
LGA    A     180      A     180          2.488
LGA    E     181      E     181          2.728
LGA    R     182      R     182          2.654
LGA    L     183      L     183          2.873
LGA    G     184      G     184          2.310
LGA    F     185      F     185          1.591
LGA    H     186      H     186          1.175
LGA    T     187      T     187          1.538
LGA    Y     188      Y     188          2.695
LGA    C     189      C     189          1.822
LGA    P     190      P     190          2.491
LGA    D     191      D     191          1.415
LGA    N     192      N     192          5.114
LGA    G     193      G     193         10.097
LGA    E     194      E     194          8.231
LGA    N     195      N     195         13.573
LGA    W     196      W     196         10.835
LGA    I     197      I     197         10.396
LGA    P     198      P     198         10.498
LGA    A     199      A     199          9.161
LGA    I     200      I     200          7.107
LGA    T     201      T     201          7.798
LGA    R     202      R     202          7.413
LGA    L     203      L     203          5.477
LGA    L     204      L     204          4.598
LGA    R     205      R     205          5.108
LGA    E     206      E     206          4.169
LGA    Q     207      Q     207          2.275

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  140  140    4.0     91    2.63    51.786    46.183     3.338

LGA_LOCAL      RMSD =  2.626  Number of atoms =   91  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.049  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  4.945  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.321150 * X  +   0.568452 * Y  +  -0.757446 * Z  +  60.971039
  Y_new =   0.943717 * X  +   0.125273 * Y  +  -0.306112 * Z  +  13.338945
  Z_new =  -0.079122 * X  +  -0.813123 * Y  +  -0.576689 * Z  +   8.720754 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.187688    0.953905  [ DEG:  -125.3453     54.6547 ]
  Theta =   0.079205    3.062387  [ DEG:     4.5381    175.4619 ]
  Phi   =   1.898807   -1.242786  [ DEG:   108.7936    -71.2064 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS168_5-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS168_5-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  140  140   4.0   91   2.63  46.183     4.94
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS168_5-D1
PFRMAT TS
TARGET T0379
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      49.021  21.881 -12.635  1.00 25.00           C
ATOM      2  CA  ILE     2      49.127  20.208  -9.194  1.00 25.00           C
ATOM      3  CA  ARG     3      51.617  22.451  -7.339  1.00 25.00           C
ATOM      4  CA  ASN     4      53.416  20.000  -5.073  1.00 25.00           C
ATOM      5  CA  ILE     5      55.438  18.090  -2.492  1.00 25.00           C
ATOM      6  CA  VAL     6      55.975  17.250   1.143  1.00 25.00           C
ATOM      7  CA  PHE     7      56.324  19.151   4.406  1.00 25.00           C
ATOM      8  CA  ASP     8      57.014  15.811   6.205  1.00 25.00           C
ATOM      9  CA  LEU     9      59.171  16.666   9.256  1.00 25.00           C
ATOM     10  CA  GLY    10      61.277  13.542   9.218  1.00 25.00           C
ATOM     11  CA  GLY    11      62.253  14.247   5.600  1.00 25.00           C
ATOM     12  CA  VAL    12      60.595  15.671   2.495  1.00 25.00           C
ATOM     13  CA  LEU    13      60.891  17.169  -1.014  1.00 25.00           C
ATOM     14  CA  ILE    14      64.484  16.185  -0.662  1.00 25.00           C
ATOM     15  CA  HIS    15      68.191  15.648  -0.414  1.00 25.00           C
ATOM     16  CA  LEU    16      67.497  14.353   3.077  1.00 25.00           C
ATOM     84  CA  LEU    84      67.990  18.164  15.612  1.00 25.00           C
ATOM     85  CA  GLU    85      68.869  21.764  14.647  1.00 25.00           C
ATOM     86  CA  GLU    86      70.236  23.317  11.453  1.00 25.00           C
ATOM     87  CA  ILE    87      68.346  20.512   9.709  1.00 25.00           C
ATOM     88  CA  SER    88      71.784  19.325   8.773  1.00 25.00           C
ATOM     89  CA  ALA    89      71.608  22.163   6.185  1.00 25.00           C
ATOM     90  CA  GLU    90      70.699  19.620   3.470  1.00 25.00           C
ATOM     91  CA  LYS    91      67.072  19.569   4.700  1.00 25.00           C
ATOM     92  CA  PHE    92      66.964  23.396   4.619  1.00 25.00           C
ATOM     93  CA  ASP    93      68.351  23.385   1.049  1.00 25.00           C
ATOM     94  CA  TYR    94      65.700  20.826   0.000  1.00 25.00           C
ATOM     95  CA  ILE    95      62.957  22.993   1.566  1.00 25.00           C
ATOM     96  CA  ASP    96      64.284  26.063  -0.299  1.00 25.00           C
ATOM     97  CA  SER    97      64.289  24.097  -3.585  1.00 25.00           C
ATOM     98  CA  LEU    98      60.684  22.975  -2.948  1.00 25.00           C
ATOM     99  CA  ARG    99      59.653  26.597  -2.251  1.00 25.00           C
ATOM    100  CA  PRO   100      59.919  28.383  -5.629  1.00 25.00           C
ATOM    101  CA  ASP   101      56.679  27.548  -7.526  1.00 25.00           C
ATOM    102  CA  TYR   102      55.865  24.711  -5.172  1.00 25.00           C
ATOM    103  CA  ARG   103      52.761  24.546  -2.884  1.00 25.00           C
ATOM    104  CA  LEU   104      55.041  23.101  -0.160  1.00 25.00           C
ATOM    105  CA  PHE   105      52.141  20.831   0.535  1.00 25.00           C
ATOM    106  CA  LEU   106      51.326  18.038   3.052  1.00 25.00           C
ATOM    107  CA  LEU   107      52.063  15.254   5.534  1.00 25.00           C
ATOM    108  CA  SER   108      53.468  11.962   6.827  1.00 25.00           C
ATOM    109  CA  ASN   109      54.910   9.415   9.165  1.00 25.00           C
ATOM    110  CA  THR   110      55.141  12.813  10.817  1.00 25.00           C
ATOM    111  CA  ASN   111      52.419  11.420  13.125  1.00 25.00           C
ATOM    112  CA  PRO   112      51.281  13.905  15.797  1.00 25.00           C
ATOM    113  CA  TYR   113      54.458  13.548  17.906  1.00 25.00           C
ATOM    114  CA  VAL   114      56.613  13.823  14.751  1.00 25.00           C
ATOM    115  CA  LEU   115      54.704  16.970  13.692  1.00 25.00           C
ATOM    116  CA  ASP   116      55.229  18.488  17.169  1.00 25.00           C
ATOM    117  CA  LEU   117      58.972  17.700  16.975  1.00 25.00           C
ATOM    118  CA  ALA   118      59.164  19.341  13.520  1.00 25.00           C
ATOM    119  CA  MET   119      57.371  22.445  14.868  1.00 25.00           C
ATOM    120  CA  SER   120      59.819  22.611  17.810  1.00 25.00           C
ATOM    121  CA  PRO   121      62.778  22.335  15.394  1.00 25.00           C
ATOM    122  CA  ARG   122      61.303  24.887  12.901  1.00 25.00           C
ATOM    123  CA  PHE   123      58.042  26.462  11.707  1.00 25.00           C
ATOM    124  CA  LEU   124      57.891  29.226  14.319  1.00 25.00           C
ATOM    125  CA  PRO   125      61.624  29.582  14.824  1.00 25.00           C
ATOM    126  CA  SER   126      64.970  30.193  13.090  1.00 25.00           C
ATOM    127  CA  GLY   127      64.011  33.356  11.238  1.00 25.00           C
ATOM    128  CA  ARG   128      64.047  30.999   8.231  1.00 25.00           C
ATOM    129  CA  THR   129      61.341  30.823   5.497  1.00 25.00           C
ATOM    130  CA  LEU   130      59.872  27.596   6.968  1.00 25.00           C
ATOM    131  CA  ASP   131      56.769  29.497   8.162  1.00 25.00           C
ATOM    132  CA  SER   132      55.383  29.526   4.592  1.00 25.00           C
ATOM    133  CA  PHE   133      55.995  25.757   4.297  1.00 25.00           C
ATOM    134  CA  PHE   134      54.197  25.180   7.628  1.00 25.00           C
ATOM    135  CA  ASP   135      51.238  27.292   6.426  1.00 25.00           C
ATOM    136  CA  LYS   136      51.092  25.278   3.170  1.00 25.00           C
ATOM    137  CA  VAL   137      50.429  22.354   5.529  1.00 25.00           C
ATOM    138  CA  TYR   138      52.353  19.940   7.818  1.00 25.00           C
ATOM    139  CA  ALA   139      50.275  17.802  10.180  1.00 25.00           C
ATOM    140  CA  SER   140      49.588  14.079   9.746  1.00 25.00           C
ATOM    141  CA  CYS   141      47.591  12.865  12.711  1.00 25.00           C
ATOM    142  CA  GLN   142      45.740  10.932  15.356  1.00 25.00           C
ATOM    143  CA  MET   143      47.002   7.930  13.417  1.00 25.00           C
ATOM    144  CA  GLY   144      43.416   7.680  12.279  1.00 25.00           C
ATOM    145  CA  LYS   145      44.444   4.753  10.009  1.00 25.00           C
ATOM    146  CA  TYR   146      48.080   4.048   9.004  1.00 25.00           C
ATOM    147  CA  LYS   147      51.059   6.153  10.083  1.00 25.00           C
ATOM    148  CA  PRO   148      49.115   8.914   8.270  1.00 25.00           C
ATOM    149  CA  ASN   149      45.968   7.992   6.329  1.00 25.00           C
ATOM    150  CA  GLU   150      42.864  10.097   5.890  1.00 25.00           C
ATOM    151  CA  ASP   151      40.838  13.089   7.157  1.00 25.00           C
ATOM    152  CA  ILE   152      44.067  14.874   8.183  1.00 25.00           C
ATOM    153  CA  PHE   153      45.564  14.207   4.722  1.00 25.00           C
ATOM    154  CA  LEU   154      42.408  15.599   3.061  1.00 25.00           C
ATOM    155  CA  GLU   155      42.598  18.727   5.261  1.00 25.00           C
ATOM    156  CA  MET   156      46.282  19.193   4.322  1.00 25.00           C
ATOM    157  CA  ILE   157      45.403  18.848   0.610  1.00 25.00           C
ATOM    158  CA  ALA   158      42.618  21.446   1.002  1.00 25.00           C
ATOM    159  CA  ASP   159      45.056  23.834   2.740  1.00 25.00           C
ATOM    160  CA  SER   160      47.587  23.351  -0.093  1.00 25.00           C
ATOM    161  CA  GLY   161      45.574  26.224  -1.688  1.00 25.00           C
ATOM    162  CA  MET   162      44.740  23.723  -4.421  1.00 25.00           C
ATOM    163  CA  LYS   163      42.940  20.368  -4.358  1.00 25.00           C
ATOM    164  CA  PRO   164      44.283  16.756  -4.316  1.00 25.00           C
ATOM    165  CA  GLU   165      45.976  14.088  -6.480  1.00 25.00           C
ATOM    166  CA  GLU   166      49.304  15.965  -6.235  1.00 25.00           C
ATOM    167  CA  THR   167      49.587  16.202  -2.442  1.00 25.00           C
ATOM    168  CA  LEU   168      52.524  13.822  -2.235  1.00 25.00           C
ATOM    169  CA  PHE   169      53.394  12.294   1.123  1.00 25.00           C
ATOM    170  CA  ILE   170      56.832  12.017   2.699  1.00 25.00           C
ATOM    171  CA  ASP   171      58.683  10.367   5.554  1.00 25.00           C
ATOM    172  CA  ASP   172      61.324   7.763   4.669  1.00 25.00           C
ATOM    173  CA  GLY   173      58.965   5.256   6.222  1.00 25.00           C
ATOM    174  CA  PRO   174      56.663   2.317   5.272  1.00 25.00           C
ATOM    175  CA  ALA   175      53.179   2.956   6.731  1.00 25.00           C
ATOM    176  CA  ASN   176      53.325   6.596   5.552  1.00 25.00           C
ATOM    177  CA  VAL   177      54.350   5.445   2.045  1.00 25.00           C
ATOM    178  CA  ALA   178      51.441   2.956   1.986  1.00 25.00           C
ATOM    179  CA  THR   179      49.019   5.722   3.055  1.00 25.00           C
ATOM    180  CA  ALA   180      50.362   8.002   0.287  1.00 25.00           C
ATOM    181  CA  GLU   181      49.910   5.195  -2.278  1.00 25.00           C
ATOM    182  CA  ARG   182      46.316   4.642  -1.076  1.00 25.00           C
ATOM    183  CA  LEU   183      45.306   8.272  -0.670  1.00 25.00           C
ATOM    184  CA  GLY   184      44.662   9.820  -4.127  1.00 25.00           C
ATOM    185  CA  PHE   185      48.455  10.435  -4.053  1.00 25.00           C
ATOM    186  CA  HIS   186      51.351  10.380  -6.469  1.00 25.00           C
ATOM    187  CA  THR   187      53.514   9.072  -3.589  1.00 25.00           C
ATOM    188  CA  TYR   188      56.887   9.335  -1.925  1.00 25.00           C
ATOM    189  CA  CYS   189      59.739   7.582  -0.155  1.00 25.00           C
ATOM    190  CA  PRO   190      62.447  10.261   0.130  1.00 25.00           C
ATOM    191  CA  ASP   191      64.805   7.345   0.931  1.00 25.00           C
ATOM    192  CA  ASN   192      66.500   3.942   1.399  1.00 25.00           C
ATOM    193  CA  GLY   193      63.821   2.364  -0.799  1.00 25.00           C
ATOM    194  CA  GLU   194      65.883   3.074  -3.947  1.00 25.00           C
ATOM    195  CA  ASN   195      63.086   1.638  -6.133  1.00 25.00           C
ATOM    196  CA  TRP   196      60.515   3.832  -4.329  1.00 25.00           C
ATOM    197  CA  ILE   197      62.726   6.911  -4.874  1.00 25.00           C
ATOM    198  CA  PRO   198      63.049   6.053  -8.592  1.00 25.00           C
ATOM    199  CA  ALA   199      59.247   5.676  -8.860  1.00 25.00           C
ATOM    200  CA  ILE   200      58.766   9.071  -7.153  1.00 25.00           C
ATOM    201  CA  THR   201      61.256  10.673  -9.582  1.00 25.00           C
ATOM    202  CA  ARG   202      59.393   9.127 -12.548  1.00 25.00           C
ATOM    203  CA  LEU   203      56.071  10.466 -11.193  1.00 25.00           C
ATOM    204  CA  LEU   204      57.608  13.952 -10.800  1.00 25.00           C
ATOM    205  CA  ARG   205      58.917  13.808 -14.396  1.00 25.00           C
ATOM    206  CA  GLU   206      55.446  12.777 -15.645  1.00 25.00           C
ATOM    207  CA  GLN   207      55.129  15.783 -17.981  1.00 25.00           C
TER
END
