
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  140 (  140),  selected  140 , name T0379TS393_2-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  140 , name T0379_D1.pdb
# PARAMETERS: T0379TS393_2-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 207         4.99     4.99
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       164 - 191         1.91     6.07
  LCS_AVERAGE:     12.86

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       173 - 188         0.99     6.14
  LCS_AVERAGE:      6.59

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      4    8  140     3    4    6   28   39   58   77   85   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I       2     I       2      4   11  140     3    4    9   17   37   58   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R       3     R       3      6   11  140     4   22   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     N       4     N       4      6   11  140     4   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I       5     I       5      6   11  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     V       6     V       6      6   11  140     7   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F       7     F       7      6   11  140     4    6   18   38   58   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D       8     D       8      6   11  140     4    9   29   41   58   69   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L       9     L       9      6   11  140     4   10   21   48   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G      10     G      10      6   11  140     4   10   20   43   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G      11     G      11      6   11  140     1    4   14   34   47   66   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     V      12     V      12      6   11  140     3    6   18   35   58   69   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L      13     L      13      4   11  140     3   12   17   34   44   53   66   81   91  100  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I      14     I      14      4    6  140     3   12   13   34   40   51   66   76   90  100  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     H      15     H      15      3    6  140     1    3    5   13   22   51   66   77   90  101  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L      16     L      16      3    6  140     2    4    9   16   34   53   66   77   90  101  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L      84     L      84      5   10  140     3    5   10   19   25   45   57   75   81   99  102  109  119  125  127  131  132  134  136  137 
LCS_GDT     E      85     E      85      5   14  140     4    5    5    8   14   20   25   33   38   45   58   71   92  102  111  118  124  129  132  134 
LCS_GDT     E      86     E      86      5   19  140     4    5    7   10   17   24   32   46   60   76   90  106  119  125  127  128  131  133  136  136 
LCS_GDT     I      87     I      87     14   22  140     4    6   13   27   44   61   79   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S      88     S      88     14   22  140     8   12   15   25   43   61   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A      89     A      89     14   22  140    10   12   26   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E      90     E      90     14   22  140    10   12   27   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     K      91     K      91     14   22  140    10   12   21   35   50   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F      92     F      92     14   22  140    10   12   26   49   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D      93     D      93     14   22  140    10   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Y      94     Y      94     14   22  140    10   12   22   30   58   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I      95     I      95     14   22  140    10   12   23   40   61   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D      96     D      96     14   22  140    10   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S      97     S      97     14   22  140    10   12   19   32   58   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L      98     L      98     14   22  140    10   12   16   30   44   67   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R      99     R      99     14   22  140     3   12   22   39   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     P     100     P     100     14   22  140     3   12   19   42   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     101     D     101     14   22  140     6   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Y     102     Y     102      8   22  140     3   12   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R     103     R     103      8   22  140     3   22   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     104     L     104      8   22  140     6   12   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     105     F     105      4   22  140     2    7   14   31   51   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     106     L     106      4   22  140     3    7   14   31   49   67   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     107     L     107      4   22  140     3   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     108     S     108      4   22  140     3    3   22   32   49   66   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     N     109     N     109      4   21  140     3    3    7   16   27   38   59   76   92  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     T     110     T     110      3   17  140     3    4    8   13   25   34   50   71   83   94  106  115  120  125  127  131  132  134  136  137 
LCS_GDT     N     111     N     111     10   17  140     0    3   10   15   17   20   28   36   54   69   79  102  117  125  127  131  132  134  136  137 
LCS_GDT     P     112     P     112     10   17  140     9    9   10   15   17   25   32   47   56   72   89  106  118  125  127  131  132  134  136  137 
LCS_GDT     Y     113     Y     113     10   17  140     9    9   10   16   25   38   49   59   84  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     V     114     V     114     10   17  140     9    9   10   23   45   65   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     115     L     115     10   17  140     9    9   10   15   25   36   50   79   92  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     116     D     116     10   17  140     9    9   10   15   25   35   49   58   75   86   99  113  120  125  127  131  132  134  136  137 
LCS_GDT     L     117     L     117     10   17  140     9    9   10   17   32   45   59   75   89  101  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     118     A     118     10   17  140     9    9   13   28   46   61   79   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     M     119     M     119     10   17  140     9    9   10   17   27   45   59   73   88  100  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     120     S     120     10   17  140     9    9   10   17   25   35   49   60   71   86   99  109  119  125  127  131  132  134  136  137 
LCS_GDT     P     121     P     121     10   17  140     3    4    9   16   25   35   49   60   71   87  100  110  120  125  127  131  132  134  136  137 
LCS_GDT     R     122     R     122      4   17  140     3    4    9   17   25   38   55   69   87   96  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     123     F     123      4   17  140     3    7   10   19   38   54   74   84   92  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     124     L     124      4   17  140     3    5    8   17   25   30   39   48   63   82   99  110  120  125  127  130  132  134  136  137 
LCS_GDT     P     125     P     125      5   17  140     3    4   12   17   26   38   56   66   82   97  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     126     S     126      5   17  140     3    6   13   25   44   59   79   84   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G     127     G     127      5    7  140     3    4    9   22   31   50   74   83   92  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R     128     R     128      5    7  140     3    6   17   33   47   66   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     T     129     T     129      5    7  140     3    4    9   21   32   53   66   70   77   89   98  103  112  119  127  131  132  134  136  137 
LCS_GDT     L     130     L     130      5    7  140     3    5    6   15   32   56   66   72   92  100  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     131     D     131      5    7  140     4    5    7   16   33   57   66   85   93  101  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     132     S     132      5    7  140     4    5    7   16   24   43   68   83   93  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     133     F     133      5    7  140     4    6    9   28   46   62   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     134     F     134      5    9  140     4    5   13   28   41   63   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     135     D     135      4    9  140     3    8   18   31   50   69   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     K     136     K     136      4    9  140     3    5   23   48   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     V     137     V     137      5    9  140     3    6   19   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Y     138     Y     138      5    9  140     3   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     139     A     139      5    9  140     3    8   24   45   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     140     S     140      5    9  140     4    4   19   48   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     C     141     C     141      5    9  140     4    7   18   32   49   66   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Q     142     Q     142      4    9  140     4    4    6   13   25   36   49   59   75   91  103  114  120  125  127  131  132  134  136  137 
LCS_GDT     M     143     M     143      4    8  140     4    4    8   17   24   30   36   55   66   91  106  114  120  125  127  131  132  134  136  137 
LCS_GDT     G     144     G     144      4    8  140     3    5   10   17   24   33   47   63   82   95  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     K     145     K     145      4    8  140     3    5    7   10   21   30   36   57   75   92  106  114  120  125  127  131  132  134  136  137 
LCS_GDT     Y     146     Y     146      4   20  140     1    4    9   26   43   57   77   85   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     K     147     K     147      4   20  140     1    4    7   17   40   48   69   85   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     P     148     P     148     15   20  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     N     149     N     149     15   20  140     4   16   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E     150     E     150     15   20  140     9   17   29   43   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     151     D     151     15   20  140     9   17   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I     152     I     152     15   20  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     153     F     153     15   20  140     9   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     154     L     154     15   20  140     9   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E     155     E     155     15   20  140     9   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     M     156     M     156     15   20  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I     157     I     157     15   20  140    10   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     158     A     158     15   20  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     159     D     159     15   20  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     S     160     S     160     15   20  140    11   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G     161     G     161     15   20  140     0    3   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     M     162     M     162     15   20  140     3   11   22   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     K     163     K     163      3   20  140     3    4   11   20   35   55   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     P     164     P     164      3   28  140     3    4    6   13   24   33   59   76   91   99  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E     165     E     165      3   28  140     3    4   13   30   49   66   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E     166     E     166      3   28  140     3    8   14   20   25   36   60   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     T     167     T     167      6   28  140     2    8   14   28   36   54   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     168     L     168      6   28  140     4    7   11   19   34   54   77   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     169     F     169      6   28  140     3    8   17   28   56   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     I     170     I     170      6   28  140     4   12   24   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     171     D     171      6   28  140     4    7   30   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     172     D     172      6   28  140     4    7   21   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G     173     G     173     16   28  140     6   23   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     P     174     P     174     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     175     A     175     16   28  140    10   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     N     176     N     176     16   28  140    10   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     V     177     V     177     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     178     A     178     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     T     179     T     179     16   28  140    10   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     A     180     A     180     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     E     181     E     181     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R     182     R     182     16   28  140    12   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     183     L     183     16   28  140     3   20   33   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     G     184     G     184     16   28  140     3   12   33   46   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     F     185     F     185     16   28  140    10   24   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     H     186     H     186     16   28  140     6   23   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     T     187     T     187     16   28  140     8   23   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Y     188     Y     188     16   28  140     4   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     C     189     C     189      9   28  140     4   12   35   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     P     190     P     190      6   28  140     4   11   26   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     D     191     D     191      4   28  140     8   23   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     N     192     N     192      4   26  140     3    5    5   24   43   52   64   78   89   99  104  114  119  124  127  131  132  134  136  137 
LCS_GDT     G     193     G     193      4    5  140     3    4    5   11   20   28   34   51   68   76   85   96  103  108  115  119  126  130  132  137 
LCS_GDT     E     194     E     194      4   14  140     3    4   11   16   34   47   58   71   82   93  101  106  110  114  121  131  132  134  136  137 
LCS_GDT     N     195     N     195      4   14  140     3    4    6    8   16   20   34   45   57   66   72   83   92  100  104  110  117  124  126  131 
LCS_GDT     W     196     W     196     12   14  140    10   11   13   17   23   33   42   51   58   68   86   94  101  108  115  119  126  131  136  137 
LCS_GDT     I     197     I     197     12   14  140    10   11   13   17   24   33   42   51   62   80   88   95  103  108  115  121  131  134  136  137 
LCS_GDT     P     198     P     198     12   14  140    10   11   13   17   27   33   46   61   71   86   94   99  106  112  118  128  132  134  136  137 
LCS_GDT     A     199     A     199     12   14  140    10   11   13   17   27   45   55   71   82   93  102  108  116  124  127  131  132  134  136  137 
LCS_GDT     I     200     I     200     12   14  140    10   11   13   17   27   47   58   75   89  100  107  114  119  124  127  131  132  134  136  137 
LCS_GDT     T     201     T     201     12   14  140    10   11   13   17   27   45   58   75   92   98  106  114  117  124  127  131  132  134  136  137 
LCS_GDT     R     202     R     202     12   14  140    10   11   13   26   40   57   70   85   93  101  107  114  119  124  127  131  132  134  136  137 
LCS_GDT     L     203     L     203     12   14  140    10   11   21   37   54   65   78   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     L     204     L     204     12   14  140    10   11   15   30   56   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     R     205     R     205     12   14  140    10   11   16   35   56   71   81   86   93  102  108  114  120  125  127  131  132  134  136  137 
LCS_GDT     E     206     E     206     12   14  140     5   12   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_GDT     Q     207     Q     207     12   14  140     6   18   36   52   62   71   81   86   96  102  108  115  120  125  127  131  132  134  136  137 
LCS_AVERAGE  LCS_A:  39.81  (   6.59   12.86  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     24     36     52     62     71     81     86     96    102    108    115    120    125    127    131    132    134    136    137 
GDT PERCENT_CA   8.57  17.14  25.71  37.14  44.29  50.71  57.86  61.43  68.57  72.86  77.14  82.14  85.71  89.29  90.71  93.57  94.29  95.71  97.14  97.86
GDT RMS_LOCAL    0.36   0.61   0.97   1.47   1.66   1.88   2.17   2.34   2.73   2.97   3.20   3.57   3.77   4.02   4.07   4.27   4.31   4.45   4.59   4.70
GDT RMS_ALL_CA   6.24   6.20   5.95   5.50   5.41   5.36   5.27   5.22   5.21   5.13   5.17   5.11   5.10   5.12   5.07   5.03   5.03   5.01   5.00   5.00

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          5.048
LGA    I       2      I       2          4.621
LGA    R       3      R       3          1.309
LGA    N       4      N       4          0.822
LGA    I       5      I       5          1.684
LGA    V       6      V       6          2.311
LGA    F       7      F       7          2.908
LGA    D       8      D       8          3.185
LGA    L       9      L       9          1.579
LGA    G      10      G      10          1.770
LGA    G      11      G      11          3.003
LGA    V      12      V      12          2.868
LGA    L      13      L      13          5.993
LGA    I      14      I      14          6.681
LGA    H      15      H      15          6.354
LGA    L      16      L      16          6.478
LGA    L      84      L      84          7.781
LGA    E      85      E      85         12.745
LGA    E      86      E      86          9.680
LGA    I      87      I      87          3.972
LGA    S      88      S      88          3.482
LGA    A      89      A      89          1.582
LGA    E      90      E      90          2.095
LGA    K      91      K      91          3.172
LGA    F      92      F      92          2.075
LGA    D      93      D      93          1.566
LGA    Y      94      Y      94          3.040
LGA    I      95      I      95          2.672
LGA    D      96      D      96          1.366
LGA    S      97      S      97          3.018
LGA    L      98      L      98          3.535
LGA    R      99      R      99          2.643
LGA    P     100      P     100          2.927
LGA    D     101      D     101          1.067
LGA    Y     102      Y     102          2.283
LGA    R     103      R     103          1.555
LGA    L     104      L     104          1.423
LGA    F     105      F     105          2.842
LGA    L     106      L     106          3.026
LGA    L     107      L     107          2.395
LGA    S     108      S     108          3.359
LGA    N     109      N     109          5.839
LGA    T     110      T     110          7.334
LGA    N     111      N     111          8.892
LGA    P     112      P     112          8.566
LGA    Y     113      Y     113          6.366
LGA    V     114      V     114          3.333
LGA    L     115      L     115          5.432
LGA    D     116      D     116          7.901
LGA    L     117      L     117          6.220
LGA    A     118      A     118          3.922
LGA    M     119      M     119          6.577
LGA    S     120      S     120          9.211
LGA    P     121      P     121          8.888
LGA    R     122      R     122          7.277
LGA    F     123      F     123          5.499
LGA    L     124      L     124          9.095
LGA    P     125      P     125          7.970
LGA    S     126      S     126          4.805
LGA    G     127      G     127          6.057
LGA    R     128      R     128          3.259
LGA    T     129      T     129          8.535
LGA    L     130      L     130          6.087
LGA    D     131      D     131          5.433
LGA    S     132      S     132          5.616
LGA    F     133      F     133          3.383
LGA    F     134      F     134          3.976
LGA    D     135      D     135          3.207
LGA    K     136      K     136          1.728
LGA    V     137      V     137          1.835
LGA    Y     138      Y     138          2.814
LGA    A     139      A     139          1.646
LGA    S     140      S     140          2.159
LGA    C     141      C     141          3.825
LGA    Q     142      Q     142          8.332
LGA    M     143      M     143          8.567
LGA    G     144      G     144          7.987
LGA    K     145      K     145          8.274
LGA    Y     146      Y     146          4.831
LGA    K     147      K     147          5.009
LGA    P     148      P     148          1.204
LGA    N     149      N     149          1.384
LGA    E     150      E     150          2.866
LGA    D     151      D     151          2.444
LGA    I     152      I     152          2.351
LGA    F     153      F     153          2.473
LGA    L     154      L     154          2.433
LGA    E     155      E     155          2.553
LGA    M     156      M     156          2.666
LGA    I     157      I     157          2.813
LGA    A     158      A     158          3.109
LGA    D     159      D     159          3.296
LGA    S     160      S     160          2.342
LGA    G     161      G     161          3.183
LGA    M     162      M     162          2.389
LGA    K     163      K     163          4.185
LGA    P     164      P     164          5.648
LGA    E     165      E     165          4.397
LGA    E     166      E     166          4.998
LGA    T     167      T     167          4.569
LGA    L     168      L     168          4.282
LGA    F     169      F     169          2.781
LGA    I     170      I     170          1.703
LGA    D     171      D     171          1.533
LGA    D     172      D     172          1.902
LGA    G     173      G     173          1.835
LGA    P     174      P     174          1.212
LGA    A     175      A     175          1.141
LGA    N     176      N     176          1.701
LGA    V     177      V     177          1.257
LGA    A     178      A     178          0.957
LGA    T     179      T     179          1.454
LGA    A     180      A     180          1.114
LGA    E     181      E     181          1.005
LGA    R     182      R     182          1.777
LGA    L     183      L     183          2.323
LGA    G     184      G     184          2.576
LGA    F     185      F     185          0.983
LGA    H     186      H     186          1.351
LGA    T     187      T     187          0.657
LGA    Y     188      Y     188          1.552
LGA    C     189      C     189          1.501
LGA    P     190      P     190          1.787
LGA    D     191      D     191          1.564
LGA    N     192      N     192          7.796
LGA    G     193      G     193         12.477
LGA    E     194      E     194          9.880
LGA    N     195      N     195         14.759
LGA    W     196      W     196         11.668
LGA    I     197      I     197         10.868
LGA    P     198      P     198         10.392
LGA    A     199      A     199          8.918
LGA    I     200      I     200          6.788
LGA    T     201      T     201          7.120
LGA    R     202      R     202          6.145
LGA    L     203      L     203          4.219
LGA    L     204      L     204          3.277
LGA    R     205      R     205          3.441
LGA    E     206      E     206          1.714
LGA    Q     207      Q     207          1.031

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  140  140    4.0     86    2.34    52.321    45.201     3.522

LGA_LOCAL      RMSD =  2.342  Number of atoms =   86  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.133  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  4.991  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.241289 * X  +   0.388469 * Y  +  -0.889310 * Z  +  59.122417
  Y_new =   0.630316 * X  +  -0.759513 * Y  +  -0.160753 * Z  +  14.166608
  Z_new =  -0.737890 * X  +  -0.521758 * Y  +  -0.428121 * Z  +   9.759072 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.257933    0.883659  [ DEG:  -129.3701     50.6299 ]
  Theta =   0.829938    2.311654  [ DEG:    47.5520    132.4480 ]
  Phi   =   1.205199   -1.936393  [ DEG:    69.0528   -110.9472 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS393_2-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS393_2-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  140  140   4.0   86   2.34  45.201     4.99
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS393_2-D1
PFRMAT TS
TARGET T0379
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      47.704  21.088 -13.369  1.00 25.00           C
ATOM      2  CA  ILE     2      48.035  20.703  -9.582  1.00 25.00           C
ATOM      3  CA  ARG     3      51.754  21.146  -8.978  1.00 25.00           C
ATOM      4  CA  ASN     4      51.375  20.154  -5.360  1.00 25.00           C
ATOM      5  CA  ILE     5      54.940  19.034  -4.712  1.00 25.00           C
ATOM      6  CA  VAL     6      55.270  17.016  -1.443  1.00 25.00           C
ATOM      7  CA  PHE     7      58.084  18.363   0.786  1.00 25.00           C
ATOM      8  CA  ASP     8      58.775  15.285   2.847  1.00 25.00           C
ATOM      9  CA  LEU     9      58.687  16.018   6.589  1.00 25.00           C
ATOM     10  CA  GLY    10      61.065  13.999   8.754  1.00 25.00           C
ATOM     11  CA  GLY    11      62.860  13.007   5.524  1.00 25.00           C
ATOM     12  CA  VAL    12      63.786  14.737   2.339  1.00 25.00           C
ATOM     13  CA  LEU    13      66.456  15.946  -0.005  1.00 25.00           C
ATOM     14  CA  ILE    14      68.828  15.310   2.878  1.00 25.00           C
ATOM     15  CA  HIS    15      71.341  15.903   5.669  1.00 25.00           C
ATOM     16  CA  LEU    16      68.522  14.461   7.798  1.00 25.00           C
ATOM     84  CA  LEU    84      64.490  19.387  18.365  1.00 25.00           C
ATOM     85  CA  GLU    85      65.204  23.010  17.353  1.00 25.00           C
ATOM     86  CA  GLU    86      67.636  23.273  14.503  1.00 25.00           C
ATOM     87  CA  ILE    87      66.855  21.333  11.275  1.00 25.00           C
ATOM     88  CA  SER    88      69.571  20.230   8.809  1.00 25.00           C
ATOM     89  CA  ALA    89      71.184  22.492   6.147  1.00 25.00           C
ATOM     90  CA  GLU    90      70.625  20.246   3.096  1.00 25.00           C
ATOM     91  CA  LYS    91      67.081  19.442   4.306  1.00 25.00           C
ATOM     92  CA  PHE    92      66.368  23.175   4.775  1.00 25.00           C
ATOM     93  CA  ASP    93      67.656  23.891   1.241  1.00 25.00           C
ATOM     94  CA  TYR    94      65.419  21.117  -0.163  1.00 25.00           C
ATOM     95  CA  ILE    95      62.404  22.573   1.699  1.00 25.00           C
ATOM     96  CA  ASP    96      63.185  26.049   0.294  1.00 25.00           C
ATOM     97  CA  SER    97      63.425  24.594  -3.240  1.00 25.00           C
ATOM     98  CA  LEU    98      60.058  22.831  -2.770  1.00 25.00           C
ATOM     99  CA  ARG    99      58.485  26.107  -1.561  1.00 25.00           C
ATOM    100  CA  PRO   100      58.496  28.425  -4.541  1.00 25.00           C
ATOM    101  CA  ASP   101      56.546  27.172  -7.628  1.00 25.00           C
ATOM    102  CA  TYR   102      55.969  23.976  -5.588  1.00 25.00           C
ATOM    103  CA  ARG   103      53.425  24.451  -2.876  1.00 25.00           C
ATOM    104  CA  LEU   104      54.919  22.172  -0.161  1.00 25.00           C
ATOM    105  CA  PHE   105      51.577  20.364  -0.020  1.00 25.00           C
ATOM    106  CA  LEU   106      52.561  18.012   2.803  1.00 25.00           C
ATOM    107  CA  LEU   107      54.039  15.212   4.807  1.00 25.00           C
ATOM    108  CA  SER   108      51.657  13.202   6.954  1.00 25.00           C
ATOM    109  CA  ASN   109      53.059   9.665   6.514  1.00 25.00           C
ATOM    110  CA  THR   110      55.882   9.043   9.013  1.00 25.00           C
ATOM    111  CA  ASN   111      56.100  12.832   9.722  1.00 25.00           C
ATOM    112  CA  PRO   112      54.489  13.196  13.158  1.00 25.00           C
ATOM    113  CA  TYR   113      55.566  14.613  16.549  1.00 25.00           C
ATOM    114  CA  VAL   114      58.319  16.659  14.847  1.00 25.00           C
ATOM    115  CA  LEU   115      55.785  18.006  12.312  1.00 25.00           C
ATOM    116  CA  ASP   116      53.411  18.966  15.160  1.00 25.00           C
ATOM    117  CA  LEU   117      56.268  20.761  16.971  1.00 25.00           C
ATOM    118  CA  ALA   118      57.148  22.653  13.759  1.00 25.00           C
ATOM    119  CA  MET   119      53.483  23.676  13.329  1.00 25.00           C
ATOM    120  CA  SER   120      53.375  24.903  16.955  1.00 25.00           C
ATOM    121  CA  PRO   121      56.576  26.929  16.391  1.00 25.00           C
ATOM    122  CA  ARG   122      60.183  25.732  16.601  1.00 25.00           C
ATOM    123  CA  PHE   123      60.961  26.004  12.910  1.00 25.00           C
ATOM    124  CA  LEU   124      60.542  29.780  13.289  1.00 25.00           C
ATOM    125  CA  PRO   125      64.318  29.809  13.609  1.00 25.00           C
ATOM    126  CA  SER   126      65.811  32.462  11.301  1.00 25.00           C
ATOM    127  CA  GLY   127      62.378  33.322   9.782  1.00 25.00           C
ATOM    128  CA  ARG   128      63.592  30.850   7.106  1.00 25.00           C
ATOM    129  CA  THR   129      62.507  30.213   3.506  1.00 25.00           C
ATOM    130  CA  LEU   130      59.612  28.226   5.066  1.00 25.00           C
ATOM    131  CA  ASP   131      56.478  30.343   5.665  1.00 25.00           C
ATOM    132  CA  SER   132      54.709  28.596   2.753  1.00 25.00           C
ATOM    133  CA  PHE   133      55.679  25.177   4.183  1.00 25.00           C
ATOM    134  CA  PHE   134      54.331  26.205   7.617  1.00 25.00           C
ATOM    135  CA  ASP   135      51.051  27.360   6.012  1.00 25.00           C
ATOM    136  CA  LYS   136      50.758  24.024   4.153  1.00 25.00           C
ATOM    137  CA  VAL   137      52.404  21.531   6.508  1.00 25.00           C
ATOM    138  CA  TYR   138      52.447  18.305   8.537  1.00 25.00           C
ATOM    139  CA  ALA   139      49.676  17.545  10.986  1.00 25.00           C
ATOM    140  CA  SER   140      50.101  13.823  11.333  1.00 25.00           C
ATOM    141  CA  CYS   141      47.513  13.675  14.098  1.00 25.00           C
ATOM    142  CA  GLN   142      44.621  11.791  12.579  1.00 25.00           C
ATOM    143  CA  MET   143      47.027   9.227  11.026  1.00 25.00           C
ATOM    144  CA  GLY   144      45.698   6.625  13.515  1.00 25.00           C
ATOM    145  CA  LYS   145      48.054   4.286  11.658  1.00 25.00           C
ATOM    146  CA  TYR   146      51.218   6.445  11.539  1.00 25.00           C
ATOM    147  CA  LYS   147      52.835   4.987   8.412  1.00 25.00           C
ATOM    148  CA  PRO   148      49.544   6.100   6.934  1.00 25.00           C
ATOM    149  CA  ASN   149      45.693   6.256   6.880  1.00 25.00           C
ATOM    150  CA  GLU   150      45.394   9.187   4.485  1.00 25.00           C
ATOM    151  CA  ASP   151      43.506  11.220   7.124  1.00 25.00           C
ATOM    152  CA  ILE   152      46.628  13.344   7.758  1.00 25.00           C
ATOM    153  CA  PHE   153      47.010  13.951   3.997  1.00 25.00           C
ATOM    154  CA  LEU   154      43.332  14.993   3.766  1.00 25.00           C
ATOM    155  CA  GLU   155      43.806  17.402   6.707  1.00 25.00           C
ATOM    156  CA  MET   156      46.897  18.900   5.014  1.00 25.00           C
ATOM    157  CA  ILE   157      44.928  19.348   1.760  1.00 25.00           C
ATOM    158  CA  ALA   158      42.098  21.071   3.680  1.00 25.00           C
ATOM    159  CA  ASP   159      44.627  23.402   5.366  1.00 25.00           C
ATOM    160  CA  SER   160      46.157  24.247   1.957  1.00 25.00           C
ATOM    161  CA  GLY   161      45.110  23.129  -1.528  1.00 25.00           C
ATOM    162  CA  MET   162      45.947  21.525  -4.933  1.00 25.00           C
ATOM    163  CA  LYS   163      42.289  21.943  -5.919  1.00 25.00           C
ATOM    164  CA  PRO   164      41.594  18.609  -4.263  1.00 25.00           C
ATOM    165  CA  GLU   165      43.564  17.155  -7.209  1.00 25.00           C
ATOM    166  CA  GLU   166      46.210  15.791  -4.799  1.00 25.00           C
ATOM    167  CA  THR   167      48.102  17.270  -1.867  1.00 25.00           C
ATOM    168  CA  LEU   168      50.810  14.621  -2.034  1.00 25.00           C
ATOM    169  CA  PHE   169      52.433  11.994   0.148  1.00 25.00           C
ATOM    170  CA  ILE   170      56.187  11.326   0.119  1.00 25.00           C
ATOM    171  CA  ASP   171      58.070  10.249   3.210  1.00 25.00           C
ATOM    172  CA  ASP   172      59.452   7.077   4.904  1.00 25.00           C
ATOM    173  CA  GLY   173      57.716   3.887   3.820  1.00 25.00           C
ATOM    174  CA  PRO   174      55.287   2.462   1.206  1.00 25.00           C
ATOM    175  CA  ALA   175      52.296   3.265   3.461  1.00 25.00           C
ATOM    176  CA  ASN   176      52.574   6.974   2.550  1.00 25.00           C
ATOM    177  CA  VAL   177      52.677   6.078  -1.173  1.00 25.00           C
ATOM    178  CA  ALA   178      49.573   3.874  -0.753  1.00 25.00           C
ATOM    179  CA  THR   179      47.757   6.731   1.039  1.00 25.00           C
ATOM    180  CA  ALA   180      48.701   9.136  -1.786  1.00 25.00           C
ATOM    181  CA  GLU   181      47.398   6.640  -4.381  1.00 25.00           C
ATOM    182  CA  ARG   182      44.117   6.295  -2.438  1.00 25.00           C
ATOM    183  CA  LEU   183      43.054   9.735  -1.089  1.00 25.00           C
ATOM    184  CA  GLY   184      44.610  10.940  -4.307  1.00 25.00           C
ATOM    185  CA  PHE   185      47.854  11.302  -6.312  1.00 25.00           C
ATOM    186  CA  HIS   186      51.401  12.386  -6.994  1.00 25.00           C
ATOM    187  CA  THR   187      53.671  10.099  -5.005  1.00 25.00           C
ATOM    188  CA  TYR   188      56.760   8.133  -3.914  1.00 25.00           C
ATOM    189  CA  CYS   189      58.246   6.114  -1.011  1.00 25.00           C
ATOM    190  CA  PRO   190      61.557   7.447   0.377  1.00 25.00           C
ATOM    191  CA  ASP   191      64.945   5.740   0.047  1.00 25.00           C
ATOM    192  CA  ASN   192      65.227   1.967  -0.475  1.00 25.00           C
ATOM    193  CA  GLY   193      62.089   1.652  -2.703  1.00 25.00           C
ATOM    194  CA  GLU   194      64.611   2.594  -5.427  1.00 25.00           C
ATOM    195  CA  ASN   195      62.028   1.775  -8.134  1.00 25.00           C
ATOM    196  CA  TRP   196      59.426   3.937  -6.339  1.00 25.00           C
ATOM    197  CA  ILE   197      61.933   6.823  -6.125  1.00 25.00           C
ATOM    198  CA  PRO   198      62.687   6.478  -9.864  1.00 25.00           C
ATOM    199  CA  ALA   199      58.939   6.530 -10.650  1.00 25.00           C
ATOM    200  CA  ILE   200      58.509   9.675  -8.508  1.00 25.00           C
ATOM    201  CA  THR   201      61.429  11.350 -10.336  1.00 25.00           C
ATOM    202  CA  ARG   202      59.867  10.441 -13.712  1.00 25.00           C
ATOM    203  CA  LEU   203      56.512  11.901 -12.581  1.00 25.00           C
ATOM    204  CA  LEU   204      58.261  15.121 -11.468  1.00 25.00           C
ATOM    205  CA  ARG   205      60.031  15.362 -14.855  1.00 25.00           C
ATOM    206  CA  GLU   206      56.690  14.877 -16.663  1.00 25.00           C
ATOM    207  CA  GLN   207      54.946  17.702 -18.553  1.00 25.00           C
TER
END
