
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  140 (  140),  selected  140 , name T0379TS393_3-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  140 , name T0379_D1.pdb
# PARAMETERS: T0379TS393_3-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 207         4.67     4.67
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       167 - 189         1.93     5.62
  LONGEST_CONTINUOUS_SEGMENT:    23       169 - 191         1.88     6.03
  LCS_AVERAGE:     12.07

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        87 - 103         0.85    10.34
  LCS_AVERAGE:      6.55

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      4   12  140     2    4   11   19   32   50   61   71   86   96  106  114  119  125  131  133  135  138  139  140 
LCS_GDT     I       2     I       2      4   12  140     2    3   13   22   37   60   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R       3     R       3      4   12  140     6   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N       4     N       4      4   12  140     4   10   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I       5     I       5      4   12  140     4   11   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     V       6     V       6      4   12  140     4   13   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F       7     F       7      5   12  140     4   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D       8     D       8      5   12  140     8   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L       9     L       9      5   12  140     8   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G      10     G      10      5   12  140     4    9   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G      11     G      11      5   12  140     4    9   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     V      12     V      12      5   12  140     4    6   17   31   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L      13     L      13      5   12  140     4    6    7   10   26   38   61   77   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I      14     I      14      5    8  140     4    6    7   10   18   33   48   74   86  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     H      15     H      15      4    7  140     3    3    4    7    9   20   29   40   67   87  104  110  119  124  130  133  135  138  139  140 
LCS_GDT     L      16     L      16      4    7  140     3    4    5   12   14   22   34   51   82   91  104  111  119  124  131  133  135  138  139  140 
LCS_GDT     L      84     L      84      0   21  140     1    4    8   15   35   59   69   80   86   99  108  114  120  125  131  133  135  138  139  140 
LCS_GDT     E      85     E      85      0   21  140     0    1    8    8   18   23   35   59   78   91  104  110  117  123  128  133  135  138  139  140 
LCS_GDT     E      86     E      86     14   21  140     1    6    7   14   18   44   62   71   83   94  107  114  119  125  131  133  135  138  139  140 
LCS_GDT     I      87     I      87     17   21  140     3   13   22   36   55   66   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S      88     S      88     17   21  140    10   14   22   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A      89     A      89     17   21  140    10   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E      90     E      90     17   21  140    10   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     K      91     K      91     17   21  140    10   14   19   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F      92     F      92     17   21  140    10   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D      93     D      93     17   21  140    10   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y      94     Y      94     17   21  140    10   14   17   35   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I      95     I      95     17   21  140    10   14   22   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D      96     D      96     17   21  140    10   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S      97     S      97     17   21  140    10   14   17   32   54   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L      98     L      98     17   21  140    10   14   17   33   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R      99     R      99     17   21  140     6   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     100     P     100     17   21  140     6   14   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     101     D     101     17   21  140     4    8   16   33   54   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y     102     Y     102     17   21  140     9   14   17   30   53   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R     103     R     103     17   21  140     4   13   17   31   50   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     104     L     104      8   21  140     4   10   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     105     F     105      4   20  140     4    8   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     106     L     106      4   20  140     3    4   10   17   35   55   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     107     L     107      4   20  140     4    8   18   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S     108     S     108      4   20  140     4    8   13   26   41   60   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     109     N     109      4   18  140     4    5   10   17   32   51   71   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     T     110     T     110     11   15  140     4   10   12   17   22   34   52   69   82   99  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     111     N     111     11   15  140     4    4    5   12   15   19   22   33   50   60   90  100  110  121  124  129  135  138  139  140 
LCS_GDT     P     112     P     112     11   15  140     9   10   12   17   21   34   51   63   81   97  106  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y     113     Y     113     11   15  140     9   10   12   17   22   34   51   63   77   97  106  115  120  125  131  133  135  138  139  140 
LCS_GDT     V     114     V     114     11   15  140     9   10   12   17   22   34   51   66   82   97  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     115     L     115     11   15  140     9   10   12   17   25   43   58   73   90  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     116     D     116     11   15  140     9   10   12   17   25   41   58   76   90  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     117     L     117     11   15  140     9   10   12   17   23   41   58   71   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     118     A     118     11   15  140     9   10   12   17   33   52   72   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     M     119     M     119     11   15  140     9   10   12   24   42   59   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S     120     S     120     11   15  140     9   10   12   17   32   55   72   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     121     P     121     10   15  140     3    4    5   10   15   19   28   48   72   93  108  114  120  125  131  133  135  138  139  140 
LCS_GDT     R     122     R     122      5   13  140     3    4    5    7   10   14   16   17   29   54   76  106  120  125  131  133  135  138  139  140 
LCS_GDT     F     123     F     123      5    7  140     3    4    5   11   24   41   62   74   86   99  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     124     L     124      7    8  140     3    7    7   12   18   26   39   61   78   98  108  114  119  125  131  133  135  138  139  140 
LCS_GDT     P     125     P     125      7    8  140     3    7   10   15   23   30   41   62   77   98  108  114  119  125  131  133  135  138  139  140 
LCS_GDT     S     126     S     126      7    8  140     3    7   13   29   39   54   70   85   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G     127     G     127      7    8  140     3    7   14   22   41   61   70   83   91  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R     128     R     128      7    8  140     2    7   14   23   44   61   73   85   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     T     129     T     129      7    8  140     3    7    8   10   22   33   62   75   86   93  106  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     130     L     130      7    8  140     3    7    8   18   34   61   73   80   91  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     131     D     131      5    8  140     4    5    8   22   37   58   73   85   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S     132     S     132      5    7  140     4    5    5    7   15   30   56   76   90  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     133     F     133      5    7  140     4    5    5    7   14   34   46   60   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     134     F     134      5    9  140     4    6    7   16   20   34   45   63   76   86  101  112  118  125  131  133  135  138  139  140 
LCS_GDT     D     135     D     135      4    9  140     4    7   10   16   20   34   46   63   83   94  104  114  119  125  131  133  135  138  139  140 
LCS_GDT     K     136     K     136      4    9  140     4    6   13   24   40   60   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     V     137     V     137      4    9  140     4    8   17   29   49   64   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y     138     Y     138      4    9  140     3    6    7    9   12   34   53   72   88   96  103  108  118  122  131  133  135  138  139  140 
LCS_GDT     A     139     A     139      4    9  140     3    5    6   16   35   49   61   78   89   96  103  111  119  125  131  133  135  138  139  140 
LCS_GDT     S     140     S     140      4    9  140     1    3    6   10   18   25   50   59   74   88   99  107  117  123  130  133  135  138  139  140 
LCS_GDT     C     141     C     141      3   21  140     0    6   13   21   37   49   61   78   89   96  103  114  119  125  131  133  135  138  139  140 
LCS_GDT     Q     142     Q     142      4   21  140     3    4    5    9   29   44   57   69   82   91   99  109  119  124  130  133  135  138  139  140 
LCS_GDT     M     143     M     143      4   21  140     3    6   17   26   40   58   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G     144     G     144      4   21  140     3    8   17   26   40   58   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     K     145     K     145      4   21  140     3    4   13   26   40   58   73   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y     146     Y     146      4   21  140     2    3   10   21   40   60   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     K     147     K     147      3   21  140     0    7   10   16   33   56   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     148     P     148     14   21  140     2    4   25   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     149     N     149     14   21  140     5   13   15   31   53   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E     150     E     150     14   21  140    10   13   18   31   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     151     D     151     14   21  140    10   13   18   39   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I     152     I     152     14   21  140    10   13   18   39   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     153     F     153     14   21  140    10   13   18   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     154     L     154     14   21  140    10   13   22   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E     155     E     155     14   21  140    10   13   18   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     M     156     M     156     14   21  140    10   13   15   31   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I     157     I     157     14   21  140    10   13   18   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     158     A     158     14   21  140    10   13   15   25   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     159     D     159     14   21  140    10   13   15   24   52   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     S     160     S     160     14   21  140     9   13   15   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G     161     G     161     14   21  140     4   13   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     M     162     M     162      4   18  140     3    4    4   20   35   58   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     K     163     K     163      4   18  140     3    4   12   29   45   64   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     164     P     164      4   18  140     3    5   12   21   39   64   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E     165     E     165      4   18  140     3    6   11   22   37   60   75   85   94  104  108  114  120  125  131  133  135  138  139  140 
LCS_GDT     E     166     E     166      7   12  140     4   13   17   27   35   49   69   82   92  100  108  114  119  125  131  133  135  138  139  140 
LCS_GDT     T     167     T     167      7   23  140     3    9   17   29   41   60   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     168     L     168      7   23  140     3    9   17   29   41   62   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     169     F     169      7   23  140     4    9   15   32   49   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I     170     I     170      7   23  140     4    9   15   32   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     171     D     171      7   23  140     4    9   15   32   54   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     172     D     172      7   23  140     4    7   17   30   43   64   74   85   92  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G     173     G     173     12   23  140     3    7   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     174     P     174     12   23  140     9   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     175     A     175     12   23  140     9   13   22   36   54   66   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     176     N     176     12   23  140     9    9   21   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     V     177     V     177     12   23  140     9   11   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     178     A     178     12   23  140     9   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     T     179     T     179     12   23  140     9    9   22   36   54   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     180     A     180     12   23  140     9   13   18   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E     181     E     181     12   23  140     9   11   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R     182     R     182     12   23  140     9   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     183     L     183     12   23  140     3   12   22   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     G     184     G     184     12   23  140     3   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     F     185     F     185      9   23  140     3   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     H     186     H     186      9   23  140     8   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     T     187     T     187      9   23  140     3   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Y     188     Y     188      9   23  140     4   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     C     189     C     189      9   23  140     5   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     P     190     P     190      5   23  140     3    6    6   13   21   43   64   78   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     D     191     D     191      5   23  140     3    6   11   21   38   60   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     192     N     192      5    7  140     3   11   13   22   35   53   67   83   92  100  106  114  120  125  131  133  135  138  139  140 
LCS_GDT     G     193     G     193      4    5  140     3    4    4   16   19   29   46   60   71   89   98  105  113  119  124  130  133  137  139  140 
LCS_GDT     E     194     E     194      4   14  140     3    8   14   22   37   56   72   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     N     195     N     195      4   14  140     3    4    6   13   16   27   33   57   70   84   98  102  108  114  124  129  130  134  139  140 
LCS_GDT     W     196     W     196     12   14  140    10   11   11   13   16   24   32   52   70   88   98  105  110  118  124  130  135  138  139  140 
LCS_GDT     I     197     I     197     12   14  140    10   11   11   13   14   24   33   52   70   88   98  105  110  118  125  132  135  138  139  140 
LCS_GDT     P     198     P     198     12   14  140    10   11   11   13   21   38   54   74   87   96  104  115  120  125  131  133  135  138  139  140 
LCS_GDT     A     199     A     199     12   14  140    10   11   11   14   28   44   64   79   92  100  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     I     200     I     200     12   14  140    10   11   11   13   24   35   61   78   92  103  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     T     201     T     201     12   14  140    10   11   11   13   29   47   64   80   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R     202     R     202     12   14  140    10   11   11   24   41   62   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     203     L     203     12   14  140    10   11   11   24   41   59   74   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     L     204     L     204     12   14  140    10   11   12   25   41   64   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     R     205     R     205     12   14  140    10   11   17   36   54   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     E     206     E     206     12   14  140     8   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_GDT     Q     207     Q     207     12   14  140     8   13   26   42   55   66   75   85   94  104  109  115  120  125  131  133  135  138  139  140 
LCS_AVERAGE  LCS_A:  39.54  (   6.55   12.07  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     26     42     55     66     75     85     94    104    109    115    120    125    131    133    135    138    139    140 
GDT PERCENT_CA   7.14  10.00  18.57  30.00  39.29  47.14  53.57  60.71  67.14  74.29  77.86  82.14  85.71  89.29  93.57  95.00  96.43  98.57  99.29 100.00
GDT RMS_LOCAL    0.20   0.46   1.11   1.48   1.73   1.96   2.30   2.61   2.89   3.21   3.40   3.65   3.81   3.97   4.19   4.28   4.36   4.54   4.60   4.67
GDT RMS_ALL_CA  13.09  12.54   5.26   5.19   5.08   5.06   5.01   4.83   4.87   4.73   4.70   4.69   4.69   4.68   4.68   4.69   4.69   4.68   4.67   4.67

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.246
LGA    I       2      I       2          3.610
LGA    R       3      R       3          1.049
LGA    N       4      N       4          1.529
LGA    I       5      I       5          0.295
LGA    V       6      V       6          2.912
LGA    F       7      F       7          2.205
LGA    D       8      D       8          1.932
LGA    L       9      L       9          1.523
LGA    G      10      G      10          1.607
LGA    G      11      G      11          2.088
LGA    V      12      V      12          2.816
LGA    L      13      L      13          5.249
LGA    I      14      I      14          5.342
LGA    H      15      H      15          7.907
LGA    L      16      L      16          7.366
LGA    L      84      L      84          5.810
LGA    E      85      E      85          8.389
LGA    E      86      E      86          6.694
LGA    I      87      I      87          2.717
LGA    S      88      S      88          2.499
LGA    A      89      A      89          2.782
LGA    E      90      E      90          1.760
LGA    K      91      K      91          1.832
LGA    F      92      F      92          2.510
LGA    D      93      D      93          2.484
LGA    Y      94      Y      94          1.947
LGA    I      95      I      95          1.601
LGA    D      96      D      96          2.222
LGA    S      97      S      97          2.751
LGA    L      98      L      98          2.009
LGA    R      99      R      99          1.879
LGA    P     100      P     100          1.371
LGA    D     101      D     101          1.788
LGA    Y     102      Y     102          2.804
LGA    R     103      R     103          3.654
LGA    L     104      L     104          2.032
LGA    F     105      F     105          0.539
LGA    L     106      L     106          3.485
LGA    L     107      L     107          1.227
LGA    S     108      S     108          3.572
LGA    N     109      N     109          4.147
LGA    T     110      T     110          6.062
LGA    N     111      N     111          9.590
LGA    P     112      P     112          7.325
LGA    Y     113      Y     113          7.247
LGA    V     114      V     114          6.478
LGA    L     115      L     115          5.493
LGA    D     116      D     116          5.456
LGA    L     117      L     117          5.308
LGA    A     118      A     118          3.619
LGA    M     119      M     119          2.698
LGA    S     120      S     120          3.969
LGA    P     121      P     121          6.937
LGA    R     122      R     122          7.971
LGA    F     123      F     123          5.977
LGA    L     124      L     124          7.004
LGA    P     125      P     125          7.128
LGA    S     126      S     126          4.201
LGA    G     127      G     127          4.690
LGA    R     128      R     128          3.804
LGA    T     129      T     129          6.788
LGA    L     130      L     130          4.876
LGA    D     131      D     131          3.980
LGA    S     132      S     132          5.568
LGA    F     133      F     133          5.266
LGA    F     134      F     134          7.266
LGA    D     135      D     135          6.857
LGA    K     136      K     136          3.806
LGA    V     137      V     137          3.732
LGA    Y     138      Y     138          7.087
LGA    A     139      A     139          7.044
LGA    S     140      S     140          8.431
LGA    C     141      C     141          7.172
LGA    Q     142      Q     142          8.659
LGA    M     143      M     143          5.315
LGA    G     144      G     144          4.977
LGA    K     145      K     145          4.721
LGA    Y     146      Y     146          4.175
LGA    K     147      K     147          3.953
LGA    P     148      P     148          1.887
LGA    N     149      N     149          2.094
LGA    E     150      E     150          2.442
LGA    D     151      D     151          2.227
LGA    I     152      I     152          2.236
LGA    F     153      F     153          2.186
LGA    L     154      L     154          2.402
LGA    E     155      E     155          2.818
LGA    M     156      M     156          2.973
LGA    I     157      I     157          3.064
LGA    A     158      A     158          3.793
LGA    D     159      D     159          4.378
LGA    S     160      S     160          3.434
LGA    G     161      G     161          3.953
LGA    M     162      M     162          3.396
LGA    K     163      K     163          3.705
LGA    P     164      P     164          3.206
LGA    E     165      E     165          4.766
LGA    E     166      E     166          5.514
LGA    T     167      T     167          4.459
LGA    L     168      L     168          3.914
LGA    F     169      F     169          3.153
LGA    I     170      I     170          2.735
LGA    D     171      D     171          2.915
LGA    D     172      D     172          3.619
LGA    G     173      G     173          1.388
LGA    P     174      P     174          1.932
LGA    A     175      A     175          3.496
LGA    N     176      N     176          2.838
LGA    V     177      V     177          0.439
LGA    A     178      A     178          2.361
LGA    T     179      T     179          3.522
LGA    A     180      A     180          2.359
LGA    E     181      E     181          0.423
LGA    R     182      R     182          2.898
LGA    L     183      L     183          3.442
LGA    G     184      G     184          2.142
LGA    F     185      F     185          2.705
LGA    H     186      H     186          0.807
LGA    T     187      T     187          1.842
LGA    Y     188      Y     188          1.608
LGA    C     189      C     189          1.112
LGA    P     190      P     190          5.464
LGA    D     191      D     191          3.763
LGA    N     192      N     192          7.279
LGA    G     193      G     193         10.400
LGA    E     194      E     194          6.539
LGA    N     195      N     195         11.450
LGA    W     196      W     196         10.005
LGA    I     197      I     197          9.311
LGA    P     198      P     198          7.667
LGA    A     199      A     199          6.931
LGA    I     200      I     200          6.397
LGA    T     201      T     201          5.823
LGA    R     202      R     202          4.311
LGA    L     203      L     203          3.983
LGA    L     204      L     204          3.384
LGA    R     205      R     205          2.424
LGA    E     206      E     206          1.511
LGA    Q     207      Q     207          1.067

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  140  140    4.0     85    2.61    48.929    42.748     3.135

LGA_LOCAL      RMSD =  2.611  Number of atoms =   85  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.724  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  4.672  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.890740 * X  +  -0.191746 * Y  +  -0.412087 * Z  +  59.625511
  Y_new =  -0.268557 * X  +  -0.953496 * Y  +  -0.136829 * Z  +  13.866603
  Z_new =  -0.366687 * X  +   0.232548 * Y  +  -0.900812 * Z  +   9.928100 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.888955   -0.252638  [ DEG:   165.5249    -14.4751 ]
  Theta =   0.375445    2.766147  [ DEG:    21.5114    158.4886 ]
  Phi   =  -0.292831    2.848762  [ DEG:   -16.7780    163.2220 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS393_3-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS393_3-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  140  140   4.0   85   2.61  42.748     4.67
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS393_3-D1
PFRMAT TS
TARGET T0379
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      47.954  24.010 -12.547  1.00 25.00           C
ATOM      2  CA  ILE     2      49.194  20.905 -10.648  1.00 25.00           C
ATOM      3  CA  ARG     3      51.500  22.690  -8.191  1.00 25.00           C
ATOM      4  CA  ASN     4      51.700  22.237  -4.427  1.00 25.00           C
ATOM      5  CA  ILE     5      53.870  19.243  -3.443  1.00 25.00           C
ATOM      6  CA  VAL     6      56.276  17.729  -1.012  1.00 25.00           C
ATOM      7  CA  PHE     7      57.505  18.254   2.495  1.00 25.00           C
ATOM      8  CA  ASP     8      58.123  15.655   5.180  1.00 25.00           C
ATOM      9  CA  LEU     9      60.360  16.600   8.106  1.00 25.00           C
ATOM     10  CA  GLY    10      61.708  13.032   8.030  1.00 25.00           C
ATOM     11  CA  GLY    11      63.683  11.466   5.204  1.00 25.00           C
ATOM     12  CA  VAL    12      63.430  11.824   1.426  1.00 25.00           C
ATOM     13  CA  LEU    13      62.703  15.342   0.288  1.00 25.00           C
ATOM     14  CA  ILE    14      63.534  16.353   3.840  1.00 25.00           C
ATOM     15  CA  HIS    15      64.592  18.745   6.562  1.00 25.00           C
ATOM     16  CA  LEU    16      65.718  16.431   9.410  1.00 25.00           C
ATOM     84  CA  LEU    84      66.211  18.405  16.877  1.00 25.00           C
ATOM     85  CA  GLU    85      68.660  20.315  14.636  1.00 25.00           C
ATOM     86  CA  GLU    86      72.127  20.926  13.112  1.00 25.00           C
ATOM     87  CA  ILE    87      70.240  19.955  10.023  1.00 25.00           C
ATOM     88  CA  SER    88      71.169  19.697   6.298  1.00 25.00           C
ATOM     89  CA  ALA    89      72.248  22.354   3.801  1.00 25.00           C
ATOM     90  CA  GLU    90      70.840  19.934   1.188  1.00 25.00           C
ATOM     91  CA  LYS    91      67.411  20.055   2.889  1.00 25.00           C
ATOM     92  CA  PHE    92      67.518  23.882   2.890  1.00 25.00           C
ATOM     93  CA  ASP    93      68.419  23.883  -0.832  1.00 25.00           C
ATOM     94  CA  TYR    94      65.506  21.504  -1.562  1.00 25.00           C
ATOM     95  CA  ILE    95      63.126  23.780   0.392  1.00 25.00           C
ATOM     96  CA  ASP    96      64.372  26.818  -1.577  1.00 25.00           C
ATOM     97  CA  SER    97      63.828  24.938  -4.869  1.00 25.00           C
ATOM     98  CA  LEU    98      60.279  24.003  -3.776  1.00 25.00           C
ATOM     99  CA  ARG    99      59.564  27.658  -2.886  1.00 25.00           C
ATOM    100  CA  PRO   100      58.260  30.113  -5.484  1.00 25.00           C
ATOM    101  CA  ASP   101      55.264  28.272  -6.775  1.00 25.00           C
ATOM    102  CA  TYR   102      54.432  26.486  -3.542  1.00 25.00           C
ATOM    103  CA  ARG   103      53.662  25.596   0.103  1.00 25.00           C
ATOM    104  CA  LEU   104      55.717  22.380   0.299  1.00 25.00           C
ATOM    105  CA  PHE   105      52.530  20.997   1.987  1.00 25.00           C
ATOM    106  CA  LEU   106      52.818  17.232   2.504  1.00 25.00           C
ATOM    107  CA  LEU   107      52.514  14.923   5.515  1.00 25.00           C
ATOM    108  CA  SER   108      53.716  11.602   6.869  1.00 25.00           C
ATOM    109  CA  ASN   109      50.612  10.969   9.003  1.00 25.00           C
ATOM    110  CA  THR   110      51.212  14.493  10.262  1.00 25.00           C
ATOM    111  CA  ASN   111      48.940  17.238  11.639  1.00 25.00           C
ATOM    112  CA  PRO   112      49.691  17.512  15.407  1.00 25.00           C
ATOM    113  CA  TYR   113      52.836  16.336  17.250  1.00 25.00           C
ATOM    114  CA  VAL   114      54.758  16.210  13.940  1.00 25.00           C
ATOM    115  CA  LEU   115      53.584  19.756  13.095  1.00 25.00           C
ATOM    116  CA  ASP   116      54.708  20.977  16.546  1.00 25.00           C
ATOM    117  CA  LEU   117      58.129  19.334  16.042  1.00 25.00           C
ATOM    118  CA  ALA   118      58.456  21.010  12.614  1.00 25.00           C
ATOM    119  CA  MET   119      57.559  24.398  14.157  1.00 25.00           C
ATOM    120  CA  SER   120      60.182  23.872  16.898  1.00 25.00           C
ATOM    121  CA  PRO   121      62.807  22.993  14.251  1.00 25.00           C
ATOM    122  CA  ARG   122      63.560  23.213  10.493  1.00 25.00           C
ATOM    123  CA  PHE   123      62.749  26.908  10.000  1.00 25.00           C
ATOM    124  CA  LEU   124      62.576  28.971  13.237  1.00 25.00           C
ATOM    125  CA  PRO   125      65.930  29.441  14.968  1.00 25.00           C
ATOM    126  CA  SER   126      67.222  31.847  12.310  1.00 25.00           C
ATOM    127  CA  GLY   127      64.466  33.931  10.786  1.00 25.00           C
ATOM    128  CA  ARG   128      61.710  32.283   8.825  1.00 25.00           C
ATOM    129  CA  THR   129      58.146  32.413   7.540  1.00 25.00           C
ATOM    130  CA  LEU   130      57.659  28.716   8.099  1.00 25.00           C
ATOM    131  CA  ASP   131      53.942  29.541   8.520  1.00 25.00           C
ATOM    132  CA  SER   132      53.047  27.007   5.790  1.00 25.00           C
ATOM    133  CA  PHE   133      55.188  24.346   7.525  1.00 25.00           C
ATOM    134  CA  PHE   134      53.452  25.087  10.858  1.00 25.00           C
ATOM    135  CA  ASP   135      50.028  24.773   9.172  1.00 25.00           C
ATOM    136  CA  LYS   136      51.065  21.424   7.631  1.00 25.00           C
ATOM    137  CA  VAL   137      53.983  18.965   8.086  1.00 25.00           C
ATOM    138  CA  TYR   138      56.307  16.752  10.192  1.00 25.00           C
ATOM    139  CA  ALA   139      56.205  12.952  10.346  1.00 25.00           C
ATOM    140  CA  SER   140      55.742   9.193  10.926  1.00 25.00           C
ATOM    141  CA  CYS   141      54.169  10.858  13.971  1.00 25.00           C
ATOM    142  CA  GLN   142      50.598  10.492  15.140  1.00 25.00           C
ATOM    143  CA  MET   143      47.429  12.213  13.780  1.00 25.00           C
ATOM    144  CA  GLY   144      45.236   9.309  14.865  1.00 25.00           C
ATOM    145  CA  LYS   145      45.177   7.293  11.635  1.00 25.00           C
ATOM    146  CA  TYR   146      48.637   5.717  12.273  1.00 25.00           C
ATOM    147  CA  LYS   147      48.242   4.341   8.741  1.00 25.00           C
ATOM    148  CA  PRO   148      47.501   7.465   6.733  1.00 25.00           C
ATOM    149  CA  ASN   149      44.122   6.018   5.808  1.00 25.00           C
ATOM    150  CA  GLU   150      44.221   8.688   3.117  1.00 25.00           C
ATOM    151  CA  ASP   151      42.782  10.850   5.932  1.00 25.00           C
ATOM    152  CA  ILE   152      46.248  12.338   6.594  1.00 25.00           C
ATOM    153  CA  PHE   153      46.657  13.109   2.865  1.00 25.00           C
ATOM    154  CA  LEU   154      43.223  14.803   2.813  1.00 25.00           C
ATOM    155  CA  GLU   155      44.180  16.893   5.876  1.00 25.00           C
ATOM    156  CA  MET   156      47.455  17.923   4.180  1.00 25.00           C
ATOM    157  CA  ILE   157      45.534  18.924   1.022  1.00 25.00           C
ATOM    158  CA  ALA   158      43.100  20.996   3.129  1.00 25.00           C
ATOM    159  CA  ASP   159      46.040  22.725   4.871  1.00 25.00           C
ATOM    160  CA  SER   160      47.627  23.501   1.474  1.00 25.00           C
ATOM    161  CA  GLY   161      45.172  24.753  -1.116  1.00 25.00           C
ATOM    162  CA  MET   162      42.473  22.894  -3.066  1.00 25.00           C
ATOM    163  CA  LYS   163      41.828  19.173  -3.059  1.00 25.00           C
ATOM    164  CA  PRO   164      42.659  15.561  -4.110  1.00 25.00           C
ATOM    165  CA  GLU   165      44.540  17.825  -6.560  1.00 25.00           C
ATOM    166  CA  GLU   166      47.088  18.696  -3.838  1.00 25.00           C
ATOM    167  CA  THR   167      49.654  17.049  -1.585  1.00 25.00           C
ATOM    168  CA  LEU   168      52.329  14.299  -1.782  1.00 25.00           C
ATOM    169  CA  PHE   169      54.797  12.751   0.727  1.00 25.00           C
ATOM    170  CA  ILE   170      58.416  12.011   1.488  1.00 25.00           C
ATOM    171  CA  ASP   171      58.471   9.806   4.621  1.00 25.00           C
ATOM    172  CA  ASP   172      60.309   7.140   6.552  1.00 25.00           C
ATOM    173  CA  GLY   173      57.477   4.757   5.747  1.00 25.00           C
ATOM    174  CA  PRO   174      54.522   3.375   3.760  1.00 25.00           C
ATOM    175  CA  ALA   175      51.791   5.700   5.101  1.00 25.00           C
ATOM    176  CA  ASN   176      53.017   8.506   2.801  1.00 25.00           C
ATOM    177  CA  VAL   177      52.961   6.114  -0.189  1.00 25.00           C
ATOM    178  CA  ALA   178      49.391   5.047   0.701  1.00 25.00           C
ATOM    179  CA  THR   179      48.326   8.718   0.935  1.00 25.00           C
ATOM    180  CA  ALA   180      49.902   9.419  -2.485  1.00 25.00           C
ATOM    181  CA  GLU   181      48.057   6.412  -3.978  1.00 25.00           C
ATOM    182  CA  ARG   182      44.760   7.663  -2.488  1.00 25.00           C
ATOM    183  CA  LEU   183      45.072  11.471  -2.137  1.00 25.00           C
ATOM    184  CA  GLY   184      46.050  11.249  -5.834  1.00 25.00           C
ATOM    185  CA  PHE   185      48.799  13.859  -5.487  1.00 25.00           C
ATOM    186  CA  HIS   186      51.533  11.902  -7.301  1.00 25.00           C
ATOM    187  CA  THR   187      54.770  11.168  -5.329  1.00 25.00           C
ATOM    188  CA  TYR   188      57.801  10.194  -3.217  1.00 25.00           C
ATOM    189  CA  CYS   189      59.473   7.620  -0.940  1.00 25.00           C
ATOM    190  CA  PRO   190      59.089   4.402   1.052  1.00 25.00           C
ATOM    191  CA  ASP   191      62.198   4.166   3.230  1.00 25.00           C
ATOM    192  CA  ASN   192      63.998   1.531   1.215  1.00 25.00           C
ATOM    193  CA  GLY   193      63.479   3.238  -2.094  1.00 25.00           C
ATOM    194  CA  GLU   194      66.058   5.351  -3.980  1.00 25.00           C
ATOM    195  CA  ASN   195      64.784   3.970  -7.317  1.00 25.00           C
ATOM    196  CA  TRP   196      61.183   4.802  -6.316  1.00 25.00           C
ATOM    197  CA  ILE   197      62.242   8.358  -5.370  1.00 25.00           C
ATOM    198  CA  PRO   198      64.010   8.756  -8.742  1.00 25.00           C
ATOM    199  CA  ALA   199      60.872   7.527 -10.561  1.00 25.00           C
ATOM    200  CA  ILE   200      58.728  10.021  -8.600  1.00 25.00           C
ATOM    201  CA  THR   201      61.146  12.849  -9.506  1.00 25.00           C
ATOM    202  CA  ARG   202      60.985  11.838 -13.195  1.00 25.00           C
ATOM    203  CA  LEU   203      57.158  11.826 -13.051  1.00 25.00           C
ATOM    204  CA  LEU   204      57.183  15.307 -11.454  1.00 25.00           C
ATOM    205  CA  ARG   205      59.537  16.575 -14.197  1.00 25.00           C
ATOM    206  CA  GLU   206      57.229  15.119 -16.884  1.00 25.00           C
ATOM    207  CA  GLN   207      54.073  16.570 -18.547  1.00 25.00           C
TER
END
