
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  140 (  140),  selected  140 , name T0379TS393_4-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  140 , name T0379_D1.pdb
# PARAMETERS: T0379TS393_4-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   138         1 - 205         4.99     5.05
  LONGEST_CONTINUOUS_SEGMENT:   138         2 - 206         4.99     5.05
  LCS_AVERAGE:     98.42

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36       155 - 190         1.98     5.91
  LCS_AVERAGE:     14.51

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       167 - 184         0.98     5.74
  LONGEST_CONTINUOUS_SEGMENT:    18       168 - 185         0.92     5.72
  LONGEST_CONTINUOUS_SEGMENT:    18       171 - 188         0.97     6.44
  LCS_AVERAGE:      7.14

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      4    8  138     3    4    5   15   24   31   47   71   85   96  106  113  122  127  130  131  135  135  136  138 
LCS_GDT     I       2     I       2      4   12  138     3    4    7   15   35   48   60   78   90   98  108  115  122  127  130  131  135  135  136  138 
LCS_GDT     R       3     R       3      4   12  138     3    4   17   32   40   62   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     N       4     N       4      4   12  138     9   19   27   35   57   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I       5     I       5      4   12  138     3   14   27   39   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     V       6     V       6      5   12  138     3    6   18   37   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F       7     F       7      6   12  138     1    6    7   25   41   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D       8     D       8      6   12  138     3   15   27   34   57   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L       9     L       9      6   12  138     4   15   27   34   53   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G      10     G      10      6   12  138     4   10   27   34   54   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G      11     G      11      6   12  138     4    6   19   31   42   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     V      12     V      12      6   12  138     4   10   27   33   45   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L      13     L      13      5   12  138     3    5   11   24   38   51   64   84   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I      14     I      14      4   12  138     3    5    9   24   33   45   60   76   88  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     H      15     H      15      3    9  138     3    3    4    5    9   21   36   43   65   84   91   99  110  118  127  130  135  135  136  138 
LCS_GDT     L      16     L      16      3    9  138     3    5    8   15   25   43   52   68   77   85   95  113  119  124  130  131  135  135  136  138 
LCS_GDT     L      84     L      84      3    4  138     1    3    4    7   33   45   56   73   83   98  109  115  119  127  130  131  135  135  136  138 
LCS_GDT     E      85     E      85      3   19  138     0    3   13   25   34   45   60   76   90  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E      86     E      86      3   19  138     3   12   16   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I      87     I      87      3   19  138     3    6   22   38   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S      88     S      88     14   19  138     4   13   16   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A      89     A      89     14   19  138    11   14   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E      90     E      90     14   19  138    11   13   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     K      91     K      91     14   19  138    11   13   19   33   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F      92     F      92     14   19  138    11   13   16   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D      93     D      93     14   19  138    11   13   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     Y      94     Y      94     14   19  138    11   13   16   37   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I      95     I      95     14   19  138    11   13   19   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D      96     D      96     14   19  138    11   14   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S      97     S      97     14   19  138    11   13   16   35   58   66   77   88   94  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L      98     L      98     14   19  138    11   13   16   37   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     R      99     R      99     14   19  138    11   13   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     100     P     100     14   19  138     8   13   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     101     D     101     14   19  138     5   11   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     Y     102     Y     102      7   19  138     3   14   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     R     103     R     103      7   19  138     3   14   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     104     L     104      5   19  138     3    7   26   33   45   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     105     F     105      5   14  138     3    6   17   32   39   53   79   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     106     L     106      5   14  138     3    4    9   21   31   44   62   84   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     107     L     107      5   15  138     2    6   16   30   48   67   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     108     S     108      4   15  138     3    6   14   28   44   59   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     N     109     N     109      4   15  138     3    3   10   16   31   46   59   80   94  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     110     T     110     11   15  138     3    6   11   13   14   22   35   47   56   72   87  104  115  119  124  131  135  135  136  138 
LCS_GDT     N     111     N     111     11   15  138     3   10   11   13   17   22   25   34   44   55   67   85   95  107  115  121  124  134  136  138 
LCS_GDT     P     112     P     112     11   15  138     5   10   11   13   17   23   30   36   54   65   84   99  107  119  119  125  129  134  136  138 
LCS_GDT     Y     113     Y     113     11   15  138     8   10   11   13   17   23   30   47   56   73   86  102  112  119  119  127  130  134  136  138 
LCS_GDT     V     114     V     114     11   15  138     8   10   11   13   17   26   37   51   69   87  102  114  119  127  130  131  135  135  136  138 
LCS_GDT     L     115     L     115     11   15  138     8   10   11   13   17   26   39   56   76   92  104  114  122  127  130  131  135  135  136  138 
LCS_GDT     D     116     D     116     11   15  138     8   10   11   13   17   26   38   58   76   92  104  114  119  127  130  131  135  135  136  138 
LCS_GDT     L     117     L     117     11   15  138     8   10   11   13   19   29   46   71   87   99  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     118     A     118     11   15  138     8   10   11   16   29   46   64   84   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     M     119     M     119     11   15  138     8   10   11   16   37   46   68   84   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     120     S     120     11   15  138     8   10   11   13   27   47   66   84   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     121     P     121     11   15  138     3    4    4   10   14   14   26   47   77   97  106  114  122  127  130  131  135  135  136  138 
LCS_GDT     R     122     R     122      5   13  138     3    4    5    7   13   23   45   65   82   98  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     123     F     123      5    8  138     3    4    8   18   35   47   59   75   85  101  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     124     L     124      5    8  138     3    4   13   32   38   48   65   78   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     125     P     125      5    8  138     3    4   10   26   34   47   61   81   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     126     S     126      5    8  138     3    4    9   13   33   47   60   76   90  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G     127     G     127      4    8  138     3    3    5   25   33   45   56   71   82   98  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     R     128     R     128      4    8  138     3    4    9   21   34   47   62   80   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     129     T     129      4    8  138     3    3    7   15   37   47   57   73   83   98  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     130     L     130      5    7  138     3    5    7   19   37   47   57   73   83   98  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     131     D     131      5    7  138     4    5    7   23   37   47   51   68   83   97  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     132     S     132      5    7  138     4    5    5   12   18   38   58   78   94  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     133     F     133      5   12  138     4    5   13   32   46   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     134     F     134      5   12  138     4    5    7   11   13   48   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     135     D     135      4   12  138     6   16   23   39   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     K     136     K     136      4   12  138     3    5   18   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     V     137     V     137      4   12  138     3    7   19   32   44   67   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     Y     138     Y     138      4   12  138     3    7   19   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     139     A     139      3   12  138     3    5   14   20   35   56   76   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     140     S     140      3   22  138     3    5   16   32   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     C     141     C     141      6   22  138     4    6   15   28   44   59   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     Q     142     Q     142      6   22  138     4    6   13   28   44   60   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     M     143     M     143      6   22  138     4    6   11   28   43   59   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G     144     G     144      6   22  138     4    6   13   30   44   61   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     K     145     K     145      6   22  138     4    6    9   19   42   59   81   88   95  102  109  115  122  126  130  131  135  135  136  138 
LCS_GDT     Y     146     Y     146      6   22  138     1    8   15   32   48   67   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     K     147     K     147      6   22  138     0    4   11   24   46   67   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     148     P     148     14   22  138     3   13   19   33   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     N     149     N     149     14   22  138     3   13   19   34   52   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     150     E     150     14   22  138     9   13   19   34   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     151     D     151     14   22  138     9   13   19   33   52   67   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I     152     I     152     14   22  138     9   13   22   39   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     153     F     153     14   22  138     9   16   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     154     L     154     14   22  138     9   13   19   34   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     155     E     155     14   36  138     9   13   21   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     M     156     M     156     14   36  138     9   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I     157     I     157     14   36  138    10   13   21   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     158     A     158     14   36  138     9   14   21   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     159     D     159     14   36  138     9   17   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     S     160     S     160     14   36  138     7   14   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G     161     G     161     14   36  138     4    6   18   33   58   68   81   88   94  101  108  115  122  127  130  131  135  135  136  138 
LCS_GDT     M     162     M     162      5   36  138     1    3    9   18   37   58   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     K     163     K     163      5   36  138     4    5   13   31   41   62   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     164     P     164      5   36  138     4    5    8   15   37   50   72   86   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     165     E     165     11   36  138     4   14   24   32   46   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     166     E     166     13   36  138     4    7   20   26   37   50   61   82   92  101  108  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     167     T     167     18   36  138     4   11   21   32   49   66   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     168     L     168     18   36  138     9   19   27   37   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     169     F     169     18   36  138     9   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     I     170     I     170     18   36  138     6   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     171     D     171     18   36  138     6   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     172     D     172     18   36  138     5   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G     173     G     173     18   36  138     6   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     174     P     174     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     175     A     175     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     N     176     N     176     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     V     177     V     177     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     178     A     178     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     179     T     179     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     A     180     A     180     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     181     E     181     18   36  138    10   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     R     182     R     182     18   36  138    10   19   28   40   58   68   79   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     L     183     L     183     18   36  138     3   17   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     G     184     G     184     18   36  138     3    9   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     F     185     F     185     18   36  138     3   16   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     H     186     H     186     18   36  138     3    7   19   31   38   66   77   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     187     T     187     18   36  138     4   14   25   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     Y     188     Y     188     18   36  138     9   19   29   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     C     189     C     189     16   36  138     4   15   26   39   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     P     190     P     190      5   36  138     9   19   27   40   58   68   81   88   95  102  109  115  122  127  130  131  135  135  136  138 
LCS_GDT     D     191     D     191      3   33  138     3    3   10   21   31   53   71   87   95  102  108  115  122  127  130  131  135  135  136  138 
LCS_GDT     N     192     N     192      4    5  138     3    3    6   10   16   23   33   39   49   76   88  100  113  117  123  129  135  135  136  138 
LCS_GDT     G     193     G     193      4    5  138     3    3    4    4    4   12   32   37   44   60   69   82  100  106  114  123  129  133  136  138 
LCS_GDT     E     194     E     194      4   13  138     3    3    5    8   17   26   33   42   53   75   82   98  113  117  124  131  135  135  136  138 
LCS_GDT     N     195     N     195      4   13  138     3    3    4    8   17   21   31   45   53   58   61   72   81   95  108  115  117  127  132  136 
LCS_GDT     W     196     W     196     12   13  138    10   11   13   19   24   31   39   49   64   72   83  101  113  123  130  131  135  135  136  138 
LCS_GDT     I     197     I     197     12   13  138    10   11   13   19   24   31   41   51   70   88  102  113  122  127  130  131  135  135  136  138 
LCS_GDT     P     198     P     198     12   13  138    10   11   13   19   24   31   39   49   68   84   98  107  119  127  130  131  135  135  136  138 
LCS_GDT     A     199     A     199     12   13  138    10   11   13   19   24   31   37   49   64   72   90  106  114  127  130  131  135  135  136  138 
LCS_GDT     I     200     I     200     12   13  138    10   11   13   19   24   34   50   73   82   96  106  115  122  127  130  131  135  135  136  138 
LCS_GDT     T     201     T     201     12   13  138    10   11   13   19   24   38   58   74   85   97  107  115  122  127  130  131  135  135  136  138 
LCS_GDT     R     202     R     202     12   13  138    10   11   13   19   24   31   45   66   81   91  102  113  122  127  130  131  135  135  136  138 
LCS_GDT     L     203     L     203     12   13  138    10   11   13   19   24   31   37   57   69   91  102  113  122  127  130  131  135  135  136  138 
LCS_GDT     L     204     L     204     12   13  138    10   11   13   19   29   48   60   73   85   97  107  115  122  127  130  131  135  135  136  138 
LCS_GDT     R     205     R     205     12   13  138    10   11   13   19   29   43   57   73   85   97  106  115  122  127  130  131  135  135  136  138 
LCS_GDT     E     206     E     206     12   13  138     3    9   13   19   24   31   41   63   79   92  102  113  121  127  130  131  135  135  136  138 
LCS_GDT     Q     207     Q     207     12   13  109     0    9   13   19   24   31   36   49   71   91  100  104  117  124  127  131  135  135  136  138 
LCS_AVERAGE  LCS_A:  40.02  (   7.14   14.51   98.42 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     19     29     40     58     68     81     88     95    102    109    115    122    127    130    131    135    135    136    138 
GDT PERCENT_CA   7.86  13.57  20.71  28.57  41.43  48.57  57.86  62.86  67.86  72.86  77.86  82.14  87.14  90.71  92.86  93.57  96.43  96.43  97.14  98.57
GDT RMS_LOCAL    0.26   0.73   1.08   1.35   1.74   2.05   2.47   2.58   2.93   3.17   3.47   3.71   4.02   4.29   4.38   4.43   4.65   4.65   4.72   4.87
GDT RMS_ALL_CA  13.50   5.64   6.28   6.33   6.22   5.96   5.84   5.84   5.56   5.49   5.49   5.24   5.14   5.09   5.08   5.08   5.06   5.06   5.05   5.05

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.105
LGA    I       2      I       2          6.065
LGA    R       3      R       3          3.184
LGA    N       4      N       4          1.470
LGA    I       5      I       5          1.361
LGA    V       6      V       6          2.443
LGA    F       7      F       7          3.239
LGA    D       8      D       8          2.272
LGA    L       9      L       9          2.663
LGA    G      10      G      10          2.749
LGA    G      11      G      11          3.203
LGA    V      12      V      12          2.783
LGA    L      13      L      13          5.059
LGA    I      14      I      14          6.814
LGA    H      15      H      15         10.386
LGA    L      16      L      16          9.250
LGA    L      84      L      84          7.955
LGA    E      85      E      85          7.252
LGA    E      86      E      86          2.723
LGA    I      87      I      87          2.613
LGA    S      88      S      88          2.781
LGA    A      89      A      89          2.468
LGA    E      90      E      90          2.605
LGA    K      91      K      91          2.809
LGA    F      92      F      92          2.684
LGA    D      93      D      93          2.960
LGA    Y      94      Y      94          2.891
LGA    I      95      I      95          2.132
LGA    D      96      D      96          2.972
LGA    S      97      S      97          3.832
LGA    L      98      L      98          2.856
LGA    R      99      R      99          2.995
LGA    P     100      P     100          2.265
LGA    D     101      D     101          0.788
LGA    Y     102      Y     102          2.203
LGA    R     103      R     103          2.176
LGA    L     104      L     104          2.690
LGA    F     105      F     105          3.998
LGA    L     106      L     106          4.994
LGA    L     107      L     107          2.917
LGA    S     108      S     108          3.839
LGA    N     109      N     109          5.378
LGA    T     110      T     110         10.002
LGA    N     111      N     111         13.078
LGA    P     112      P     112         12.328
LGA    Y     113      Y     113         11.785
LGA    V     114      V     114          9.213
LGA    L     115      L     115          8.914
LGA    D     116      D     116          9.702
LGA    L     117      L     117          7.726
LGA    A     118      A     118          5.268
LGA    M     119      M     119          5.811
LGA    S     120      S     120          5.320
LGA    P     121      P     121          6.211
LGA    R     122      R     122          8.485
LGA    F     123      F     123          7.759
LGA    L     124      L     124          6.478
LGA    P     125      P     125          6.486
LGA    S     126      S     126          6.839
LGA    G     127      G     127          9.107
LGA    R     128      R     128          6.626
LGA    T     129      T     129          7.888
LGA    L     130      L     130          7.290
LGA    D     131      D     131          7.968
LGA    S     132      S     132          6.577
LGA    F     133      F     133          2.380
LGA    F     134      F     134          3.771
LGA    D     135      D     135          0.761
LGA    K     136      K     136          2.330
LGA    V     137      V     137          3.309
LGA    Y     138      Y     138          2.151
LGA    A     139      A     139          3.977
LGA    S     140      S     140          2.328
LGA    C     141      C     141          3.919
LGA    Q     142      Q     142          3.763
LGA    M     143      M     143          3.999
LGA    G     144      G     144          3.686
LGA    K     145      K     145          3.657
LGA    Y     146      Y     146          2.527
LGA    K     147      K     147          2.642
LGA    P     148      P     148          2.573
LGA    N     149      N     149          2.662
LGA    E     150      E     150          2.205
LGA    D     151      D     151          3.074
LGA    I     152      I     152          1.735
LGA    F     153      F     153          1.244
LGA    L     154      L     154          2.876
LGA    E     155      E     155          2.272
LGA    M     156      M     156          1.028
LGA    I     157      I     157          2.962
LGA    A     158      A     158          3.273
LGA    D     159      D     159          2.102
LGA    S     160      S     160          2.447
LGA    G     161      G     161          3.794
LGA    M     162      M     162          3.573
LGA    K     163      K     163          3.317
LGA    P     164      P     164          4.398
LGA    E     165      E     165          2.868
LGA    E     166      E     166          4.416
LGA    T     167      T     167          3.046
LGA    L     168      L     168          1.652
LGA    F     169      F     169          0.710
LGA    I     170      I     170          1.068
LGA    D     171      D     171          0.519
LGA    D     172      D     172          1.510
LGA    G     173      G     173          2.092
LGA    P     174      P     174          1.973
LGA    A     175      A     175          2.815
LGA    N     176      N     176          1.960
LGA    V     177      V     177          1.280
LGA    A     178      A     178          2.463
LGA    T     179      T     179          2.587
LGA    A     180      A     180          1.345
LGA    E     181      E     181          2.272
LGA    R     182      R     182          3.093
LGA    L     183      L     183          1.136
LGA    G     184      G     184          2.108
LGA    F     185      F     185          1.067
LGA    H     186      H     186          3.606
LGA    T     187      T     187          2.368
LGA    Y     188      Y     188          1.015
LGA    C     189      C     189          0.975
LGA    P     190      P     190          0.992
LGA    D     191      D     191          4.902
LGA    N     192      N     192         11.202
LGA    G     193      G     193         13.208
LGA    E     194      E     194         12.081
LGA    N     195      N     195         14.695
LGA    W     196      W     196         10.611
LGA    I     197      I     197          9.006
LGA    P     198      P     198         10.433
LGA    A     199      A     199         10.766
LGA    I     200      I     200          8.020
LGA    T     201      T     201          7.832
LGA    R     202      R     202          9.805
LGA    L     203      L     203          9.309
LGA    L     204      L     204          7.042
LGA    R     205      R     205          8.040
LGA    E     206      E     206          9.263
LGA    Q     207      Q     207          9.812

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  140  140    4.0     88    2.58    49.643    44.270     3.280

LGA_LOCAL      RMSD =  2.583  Number of atoms =   88  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.680  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  5.042  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.016705 * X  +   0.580576 * Y  +  -0.814035 * Z  +  57.220364
  Y_new =   0.672037 * X  +  -0.596303 * Y  +  -0.439078 * Z  +  18.013266
  Z_new =  -0.740329 * X  +  -0.554396 * Y  +  -0.380207 * Z  +   9.717617 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.171931    0.969662  [ DEG:  -124.4425     55.5575 ]
  Theta =   0.833560    2.308033  [ DEG:    47.7595    132.2405 ]
  Phi   =   1.595649   -1.545944  [ DEG:    91.4239    -88.5761 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS393_4-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS393_4-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  140  140   4.0   88   2.58  44.270     5.04
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS393_4-D1
PFRMAT TS
TARGET T0379
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      44.641  21.889 -12.686  1.00 25.00           C
ATOM      2  CA  ILE     2      46.606  21.070  -9.563  1.00 25.00           C
ATOM      3  CA  ARG     3      48.403  23.568  -7.363  1.00 25.00           C
ATOM      4  CA  ASN     4      49.987  20.543  -5.670  1.00 25.00           C
ATOM      5  CA  ILE     5      53.472  19.832  -4.256  1.00 25.00           C
ATOM      6  CA  VAL     6      55.006  19.159  -0.847  1.00 25.00           C
ATOM      7  CA  PHE     7      56.373  19.442   2.732  1.00 25.00           C
ATOM      8  CA  ASP     8      56.183  15.913   4.175  1.00 25.00           C
ATOM      9  CA  LEU     9      57.911  17.482   7.174  1.00 25.00           C
ATOM     10  CA  GLY    10      59.679  14.620   8.848  1.00 25.00           C
ATOM     11  CA  GLY    11      60.926  12.620   5.909  1.00 25.00           C
ATOM     12  CA  VAL    12      61.069  14.942   2.897  1.00 25.00           C
ATOM     13  CA  LEU    13      61.444  18.520   1.658  1.00 25.00           C
ATOM     14  CA  ILE    14      62.992  19.910   4.785  1.00 25.00           C
ATOM     15  CA  HIS    15      64.371  21.517   7.995  1.00 25.00           C
ATOM     16  CA  LEU    16      64.733  18.347  10.116  1.00 25.00           C
ATOM     84  CA  LEU    84      68.008  21.096  14.350  1.00 25.00           C
ATOM     85  CA  GLU    85      70.874  19.549  12.334  1.00 25.00           C
ATOM     86  CA  GLU    86      72.726  16.347  11.308  1.00 25.00           C
ATOM     87  CA  ILE    87      69.733  15.935   8.982  1.00 25.00           C
ATOM     88  CA  SER    88      71.439  18.858   7.164  1.00 25.00           C
ATOM     89  CA  ALA    89      72.346  21.888   5.050  1.00 25.00           C
ATOM     90  CA  GLU    90      71.078  19.309   2.517  1.00 25.00           C
ATOM     91  CA  LYS    91      67.519  19.688   3.878  1.00 25.00           C
ATOM     92  CA  PHE    92      67.785  23.497   3.585  1.00 25.00           C
ATOM     93  CA  ASP    93      69.015  23.158  -0.026  1.00 25.00           C
ATOM     94  CA  TYR    94      66.084  20.828  -0.832  1.00 25.00           C
ATOM     95  CA  ILE    95      63.634  23.339   0.706  1.00 25.00           C
ATOM     96  CA  ASP    96      65.178  26.158  -1.375  1.00 25.00           C
ATOM     97  CA  SER    97      64.853  24.031  -4.543  1.00 25.00           C
ATOM     98  CA  LEU    98      61.185  23.313  -3.714  1.00 25.00           C
ATOM     99  CA  ARG    99      60.545  27.052  -3.187  1.00 25.00           C
ATOM    100  CA  PRO   100      58.905  29.369  -5.727  1.00 25.00           C
ATOM    101  CA  ASP   101      56.675  27.388  -8.042  1.00 25.00           C
ATOM    102  CA  TYR   102      56.026  24.097  -6.338  1.00 25.00           C
ATOM    103  CA  ARG   103      54.158  25.579  -3.391  1.00 25.00           C
ATOM    104  CA  LEU   104      51.560  23.905  -1.228  1.00 25.00           C
ATOM    105  CA  PHE   105      50.017  20.486  -0.394  1.00 25.00           C
ATOM    106  CA  LEU   106      50.604  17.525   1.976  1.00 25.00           C
ATOM    107  CA  LEU   107      51.201  14.331   3.954  1.00 25.00           C
ATOM    108  CA  SER   108      53.330  12.023   6.151  1.00 25.00           C
ATOM    109  CA  ASN   109      49.935  11.670   7.844  1.00 25.00           C
ATOM    110  CA  THR   110      48.056  14.945   7.867  1.00 25.00           C
ATOM    111  CA  ASN   111      46.665  18.279   9.207  1.00 25.00           C
ATOM    112  CA  PRO   112      47.799  21.339  11.149  1.00 25.00           C
ATOM    113  CA  TYR   113      49.894  20.835  14.315  1.00 25.00           C
ATOM    114  CA  VAL   114      52.736  19.343  12.226  1.00 25.00           C
ATOM    115  CA  LEU   115      52.577  22.327   9.832  1.00 25.00           C
ATOM    116  CA  ASP   116      52.713  24.746  12.800  1.00 25.00           C
ATOM    117  CA  LEU   117      55.748  22.883  14.209  1.00 25.00           C
ATOM    118  CA  ALA   118      57.480  23.075  10.799  1.00 25.00           C
ATOM    119  CA  MET   119      56.767  26.834  10.620  1.00 25.00           C
ATOM    120  CA  SER   120      58.206  27.299  14.138  1.00 25.00           C
ATOM    121  CA  PRO   121      61.342  25.341  13.142  1.00 25.00           C
ATOM    122  CA  ARG   122      61.873  28.181  10.662  1.00 25.00           C
ATOM    123  CA  PHE   123      64.096  27.670   7.555  1.00 25.00           C
ATOM    124  CA  LEU   124      66.961  30.159   7.204  1.00 25.00           C
ATOM    125  CA  PRO   125      66.758  31.757  10.631  1.00 25.00           C
ATOM    126  CA  SER   126      64.975  35.078  10.243  1.00 25.00           C
ATOM    127  CA  GLY   127      62.133  37.183   8.873  1.00 25.00           C
ATOM    128  CA  ARG   128      59.812  34.281   8.170  1.00 25.00           C
ATOM    129  CA  THR   129      61.725  32.575   5.347  1.00 25.00           C
ATOM    130  CA  LEU   130      60.022  29.332   4.427  1.00 25.00           C
ATOM    131  CA  ASP   131      56.876  30.707   2.731  1.00 25.00           C
ATOM    132  CA  SER   132      56.161  27.265   1.212  1.00 25.00           C
ATOM    133  CA  PHE   133      56.588  25.633   4.651  1.00 25.00           C
ATOM    134  CA  PHE   134      54.187  28.189   6.190  1.00 25.00           C
ATOM    135  CA  ASP   135      51.625  27.480   3.432  1.00 25.00           C
ATOM    136  CA  LYS   136      51.947  23.717   4.066  1.00 25.00           C
ATOM    137  CA  VAL   137      49.280  21.936   6.198  1.00 25.00           C
ATOM    138  CA  TYR   138      51.172  18.812   7.211  1.00 25.00           C
ATOM    139  CA  ALA   139      53.041  15.926   8.926  1.00 25.00           C
ATOM    140  CA  SER   140      51.273  14.496  12.027  1.00 25.00           C
ATOM    141  CA  CYS   141      48.434  12.974  13.991  1.00 25.00           C
ATOM    142  CA  GLN   142      46.232  16.105  13.824  1.00 25.00           C
ATOM    143  CA  MET   143      43.996  14.165  11.487  1.00 25.00           C
ATOM    144  CA  GLY   144      43.251  11.319  13.869  1.00 25.00           C
ATOM    145  CA  LYS   145      44.673   8.235  12.119  1.00 25.00           C
ATOM    146  CA  TYR   146      48.308   7.747  13.245  1.00 25.00           C
ATOM    147  CA  LYS   147      49.226   5.930  10.000  1.00 25.00           C
ATOM    148  CA  PRO   148      46.059   6.546   7.977  1.00 25.00           C
ATOM    149  CA  ASN   149      42.993   6.129   5.738  1.00 25.00           C
ATOM    150  CA  GLU   150      43.808   8.944   3.225  1.00 25.00           C
ATOM    151  CA  ASP   151      40.907  11.142   4.414  1.00 25.00           C
ATOM    152  CA  ILE   152      43.315  13.195   6.572  1.00 25.00           C
ATOM    153  CA  PHE   153      45.664  13.630   3.578  1.00 25.00           C
ATOM    154  CA  LEU   154      42.724  14.774   1.407  1.00 25.00           C
ATOM    155  CA  GLU   155      41.681  17.289   4.099  1.00 25.00           C
ATOM    156  CA  MET   156      45.267  18.619   4.282  1.00 25.00           C
ATOM    157  CA  ILE   157      45.349  18.989   0.471  1.00 25.00           C
ATOM    158  CA  ALA   158      42.018  20.878   0.558  1.00 25.00           C
ATOM    159  CA  ASP   159      43.377  23.199   3.284  1.00 25.00           C
ATOM    160  CA  SER   160      46.520  23.852   1.195  1.00 25.00           C
ATOM    161  CA  GLY   161      44.758  25.024  -1.985  1.00 25.00           C
ATOM    162  CA  MET   162      42.158  22.815  -3.708  1.00 25.00           C
ATOM    163  CA  LYS   163      40.905  19.394  -4.801  1.00 25.00           C
ATOM    164  CA  PRO   164      41.130  15.612  -5.138  1.00 25.00           C
ATOM    165  CA  GLU   165      44.376  14.820  -7.009  1.00 25.00           C
ATOM    166  CA  GLU   166      46.181  17.613  -5.108  1.00 25.00           C
ATOM    167  CA  THR   167      49.074  16.188  -3.147  1.00 25.00           C
ATOM    168  CA  LEU   168      51.878  14.382  -4.882  1.00 25.00           C
ATOM    169  CA  PHE   169      53.177  12.838  -1.600  1.00 25.00           C
ATOM    170  CA  ILE   170      56.582  12.875  -0.000  1.00 25.00           C
ATOM    171  CA  ASP   171      57.592   9.718   1.859  1.00 25.00           C
ATOM    172  CA  ASP   172      59.803   7.831   4.335  1.00 25.00           C
ATOM    173  CA  GLY   173      57.722   5.577   6.467  1.00 25.00           C
ATOM    174  CA  PRO   174      56.264   3.003   4.116  1.00 25.00           C
ATOM    175  CA  ALA   175      53.164   3.860   6.194  1.00 25.00           C
ATOM    176  CA  ASN   176      53.076   7.368   4.659  1.00 25.00           C
ATOM    177  CA  VAL   177      53.344   5.865   1.148  1.00 25.00           C
ATOM    178  CA  ALA   178      50.476   3.452   1.935  1.00 25.00           C
ATOM    179  CA  THR   179      48.341   6.366   3.206  1.00 25.00           C
ATOM    180  CA  ALA   180      49.088   8.340   0.009  1.00 25.00           C
ATOM    181  CA  GLU   181      48.100   5.314  -2.119  1.00 25.00           C
ATOM    182  CA  ARG   182      44.833   4.964  -0.152  1.00 25.00           C
ATOM    183  CA  LEU   183      43.399   7.948  -1.979  1.00 25.00           C
ATOM    184  CA  GLY   184      44.978  10.383  -4.486  1.00 25.00           C
ATOM    185  CA  PHE   185      48.586  10.198  -5.640  1.00 25.00           C
ATOM    186  CA  HIS   186      51.144   7.583  -6.683  1.00 25.00           C
ATOM    187  CA  THR   187      53.463   7.585  -3.738  1.00 25.00           C
ATOM    188  CA  TYR   188      56.932   9.020  -3.881  1.00 25.00           C
ATOM    189  CA  CYS   189      59.713   6.758  -2.618  1.00 25.00           C
ATOM    190  CA  PRO   190      62.265   8.835  -0.714  1.00 25.00           C
ATOM    191  CA  ASP   191      65.114   7.791  -3.026  1.00 25.00           C
ATOM    192  CA  ASN   192      63.723   5.853  -5.915  1.00 25.00           C
ATOM    193  CA  GLY   193      61.654   8.879  -6.896  1.00 25.00           C
ATOM    194  CA  GLU   194      62.739  10.505 -10.190  1.00 25.00           C
ATOM    195  CA  ASN   195      59.536   9.268 -11.885  1.00 25.00           C
ATOM    196  CA  TRP   196      57.438  10.690  -9.014  1.00 25.00           C
ATOM    197  CA  ILE   197      59.246  14.052  -9.326  1.00 25.00           C
ATOM    198  CA  PRO   198      58.590  14.081 -13.100  1.00 25.00           C
ATOM    199  CA  ALA   199      54.886  13.328 -12.487  1.00 25.00           C
ATOM    200  CA  ILE   200      54.702  16.180  -9.937  1.00 25.00           C
ATOM    201  CA  THR   201      56.345  18.561 -12.447  1.00 25.00           C
ATOM    202  CA  ARG   202      53.833  17.501 -15.136  1.00 25.00           C
ATOM    203  CA  LEU   203      50.938  18.107 -12.704  1.00 25.00           C
ATOM    204  CA  LEU   204      52.330  21.575 -11.871  1.00 25.00           C
ATOM    205  CA  ARG   205      52.617  22.384 -15.602  1.00 25.00           C
ATOM    206  CA  GLU   206      48.999  21.254 -16.151  1.00 25.00           C
ATOM    207  CA  GLN   207      47.435  24.733 -16.603  1.00 25.00           C
TER
END
