
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  131 (  131),  selected  131 , name T0379TS677_2-D1
# Molecule2: number of CA atoms  140 ( 1126),  selected  131 , name T0379_D1.pdb
# PARAMETERS: T0379TS677_2-D1.T0379_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   131         1 - 204         3.48     3.48
  LCS_AVERAGE:     93.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    62       130 - 191         1.98     3.57
  LONGEST_CONTINUOUS_SEGMENT:    62       131 - 192         1.99     3.59
  LCS_AVERAGE:     32.87

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32       160 - 191         1.00     4.02
  LCS_AVERAGE:     11.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1     16   42  131    19   46   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I       2     I       2     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     R       3     R       3     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N       4     N       4     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I       5     I       5     16   42  131    19   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     V       6     V       6     16   42  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F       7     F       7     16   42  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D       8     D       8     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L       9     L       9     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G      10     G      10     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G      11     G      11     16   42  131    15   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     V      12     V      12     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L      13     L      13     16   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I      14     I      14     16   42  131    10   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     H      15     H      15     16   42  131     7   35   68   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L      16     L      16     16   42  131     5   30   68   82   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L      84     L      84      3   42  131     0    3    9   20   47   67   99  106  112  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E      85     E      85      5   42  131     3    9   21   53   65   80  100  106  112  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E      86     E      86      5   42  131     3   21   47   78   92  101  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I      87     I      87      5   42  131     3    5   62   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S      88     S      88     10   42  131    17   30   63   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A      89     A      89     10   42  131     4   12   35   62   87   95  103  109  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E      90     E      90     11   42  131     8   29   53   84   94  102  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     K      91     K      91     11   42  131    15   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F      92     F      92     11   42  131     7   11   52   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D      93     D      93     11   42  131     9   29   60   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y      94     Y      94     11   42  131    18   37   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I      95     I      95     11   42  131     7   48   67   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D      96     D      96     11   42  131     7   29   64   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S      97     S      97     12   42  131     9   34   62   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L      98     L      98     12   42  131    11   34   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     R      99     R      99     12   42  131     9   34   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     100     P     100     12   42  131     3    9   16   58   82  101  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     101     D     101     12   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y     102     Y     102     12   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     R     103     R     103     12   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     104     L     104     12   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     105     F     105     12   42  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     106     L     106     12   42  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     107     L     107     12   42  131    18   43   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S     108     S     108     12   42  131    13   33   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N     109     N     109     12   42  131     9   26   44   78   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     110     T     110     10   42  131     6   21   43   77   93  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N     111     N     111     10   26  131     7    9   17   50   69   93  105  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     112     P     112     10   12  131     7    9   10   19   28   41   60   90  110  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y     113     Y     113     10   12  131     7    9   12   18   25   34   53   76  108  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     V     114     V     114     10   12  131     7   10   32   53   82  100  108  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     115     L     115     10   12  131     7    9   17   37   79  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     116     D     116     10   12  131     7    9   10   11   23   41   60   95  110  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     117     L     117     10   12  131     7   11   33   55   91  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     118     A     118     10   12  131     7   38   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     125     P     125      3    3  131     3    3    3    3    3    4    4    5   37   42   65   74   83   95  120  126  128  129  129  130 
LCS_GDT     S     126     S     126      3    4  131     3    3    7    9   17   45   51   64   98  108  110  115  120  123  127  128  128  129  129  130 
LCS_GDT     G     127     G     127      4    4  131     3    3   12   48   65   91  102  109  112  117  120  122  125  126  127  128  128  129  129  130 
LCS_GDT     R     128     R     128      4    4  131     8   15   18   46   78   92  102  108  112  117  120  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     129     T     129      7   11  131     3   14   37   53   83   94  103  109  114  117  120  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     130     L     130      7   62  131     5   10   19   40   78   92  100  109  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     131     D     131      7   62  131     4   16   37   59   88   99  104  110  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S     132     S     132      7   62  131     8   28   56   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     133     F     133      7   62  131     6   32   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     134     F     134      8   62  131    11   43   67   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     135     D     135      8   62  131    18   48   67   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     K     136     K     136      8   62  131    11   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     V     137     V     137      8   62  131    15   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y     138     Y     138      8   62  131    13   39   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     139     A     139      8   62  131     6   33   68   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S     140     S     140      9   62  131     5   15   49   79   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     C     141     C     141      9   62  131     6   12   23   55   84  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Q     142     Q     142      9   62  131     6    9   17   38   68   77   90  109  113  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     M     143     M     143      9   62  131     6    9   21   48   68   81  102  109  113  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G     144     G     144     18   62  131     6   18   63   79   93  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     K     145     K     145     18   62  131     6    9   59   77   93  102  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y     146     Y     146     18   62  131     6   40   68   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     K     147     K     147     18   62  131     8   40   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     148     P     148     18   62  131     9   37   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N     149     N     149     18   62  131     9   38   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E     150     E     150     18   62  131    12   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     151     D     151     18   62  131    12   46   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I     152     I     152     18   62  131    12   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     153     F     153     18   62  131    12   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     154     L     154     18   62  131     9   45   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E     155     E     155     18   62  131     8   15   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     M     156     M     156     18   62  131     8   15   55   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I     157     I     157     18   62  131     9   35   67   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     158     A     158     18   62  131     9   15   65   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     159     D     159     18   62  131     8   15   48   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     S     160     S     160     32   62  131     5   22   60   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G     161     G     161     32   62  131     9   37   66   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     M     162     M     162     32   62  131     5    7   47   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     K     163     K     163     32   62  131     6   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     164     P     164     32   62  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E     165     E     165     32   62  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E     166     E     166     32   62  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     167     T     167     32   62  131    18   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     168     L     168     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     169     F     169     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I     170     I     170     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     171     D     171     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     172     D     172     32   62  131    11   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G     173     G     173     32   62  131    21   47   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     174     P     174     32   62  131    21   46   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     175     A     175     32   62  131    21   46   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N     176     N     176     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     V     177     V     177     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     178     A     178     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     179     T     179     32   62  131    21   47   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     180     A     180     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     E     181     E     181     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     R     182     R     182     32   62  131    21   47   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     183     L     183     32   62  131    21   46   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     G     184     G     184     32   62  131    21   47   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     F     185     F     185     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     H     186     H     186     32   62  131    14   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     187     T     187     32   62  131    14   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     Y     188     Y     188     32   62  131    21   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     C     189     C     189     32   62  131    14   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     190     P     190     32   62  131     5   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     D     191     D     191     32   62  131     3   33   56   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     N     192     N     192     30   62  131     3    4   18   35   60   85   97  106  113  115  120  121  124  126  127  128  128  129  129  130 
LCS_GDT     G     193     G     193      4   51  131     3    4   12   19   49   81   97  105  111  115  120  121  125  126  127  128  128  129  129  130 
LCS_GDT     E     194     E     194      4   50  131     3    4    4    5   21   32   50   74   98  110  115  118  122  125  127  128  128  129  129  130 
LCS_GDT     N     195     N     195      3    8  131     3    3    5    6    9   10   11   11   14   16   20   76   85   96  103  116  118  128  129  130 
LCS_GDT     W     196     W     196      3    8  131     0    3    5    5    9   10   11   11   12   13   13   24   29   33   36   42   78  117  120  123 
LCS_GDT     I     197     I     197      8    8  131     4    8   39   70   93  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     P     198     P     198      8    8  131     6   15   61   78   92  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     A     199     A     199      8    8  131    11   40   68   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     I     200     I     200      8    8  131    12   48   68   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     T     201     T     201      8    8  131     9   43   68   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     R     202     R     202      8    8  131     5   29   66   81   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     203     L     203      8    8  131     5    9   64   85   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_GDT     L     204     L     204      8    8  131     3    9   43   86   95  103  109  111  114  117  121  122  125  126  127  128  128  129  129  130 
LCS_AVERAGE  LCS_A:  46.09  (  11.83   32.87   93.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     48     68     86     95    103    109    111    114    117    121    122    125    126    127    128    128    129    129    130 
GDT PERCENT_CA  15.00  34.29  48.57  61.43  67.86  73.57  77.86  79.29  81.43  83.57  86.43  87.14  89.29  90.00  90.71  91.43  91.43  92.14  92.14  92.86
GDT RMS_LOCAL    0.29   0.73   0.97   1.27   1.39   1.60   1.77   1.88   1.99   2.17   2.46   2.47   2.67   2.71   2.81   2.90   2.90   3.02   3.02   3.23
GDT RMS_ALL_CA   4.38   3.72   3.73   3.65   3.63   3.58   3.56   3.55   3.55   3.53   3.56   3.53   3.51   3.52   3.51   3.50   3.50   3.50   3.50   3.49

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.705
LGA    I       2      I       2          2.424
LGA    R       3      R       3          2.273
LGA    N       4      N       4          1.762
LGA    I       5      I       5          1.491
LGA    V       6      V       6          1.227
LGA    F       7      F       7          0.718
LGA    D       8      D       8          0.604
LGA    L       9      L       9          0.980
LGA    G      10      G      10          1.488
LGA    G      11      G      11          1.714
LGA    V      12      V      12          0.588
LGA    L      13      L      13          0.587
LGA    I      14      I      14          1.018
LGA    H      15      H      15          1.804
LGA    L      16      L      16          2.156
LGA    L      84      L      84          6.045
LGA    E      85      E      85          5.304
LGA    E      86      E      86          3.362
LGA    I      87      I      87          2.551
LGA    S      88      S      88          2.704
LGA    A      89      A      89          5.073
LGA    E      90      E      90          3.092
LGA    K      91      K      91          0.524
LGA    F      92      F      92          2.757
LGA    D      93      D      93          2.595
LGA    Y      94      Y      94          0.954
LGA    I      95      I      95          0.999
LGA    D      96      D      96          1.815
LGA    S      97      S      97          1.410
LGA    L      98      L      98          0.682
LGA    R      99      R      99          1.066
LGA    P     100      P     100          3.242
LGA    D     101      D     101          2.635
LGA    Y     102      Y     102          1.322
LGA    R     103      R     103          1.691
LGA    L     104      L     104          1.376
LGA    F     105      F     105          1.660
LGA    L     106      L     106          1.297
LGA    L     107      L     107          1.472
LGA    S     108      S     108          1.416
LGA    N     109      N     109          1.876
LGA    T     110      T     110          2.074
LGA    N     111      N     111          3.991
LGA    P     112      P     112          6.044
LGA    Y     113      Y     113          6.877
LGA    V     114      V     114          3.247
LGA    L     115      L     115          2.900
LGA    D     116      D     116          5.876
LGA    L     117      L     117          2.561
LGA    A     118      A     118          2.536
LGA    P     125      P     125          9.835
LGA    S     126      S     126          8.135
LGA    G     127      G     127          5.880
LGA    R     128      R     128          6.379
LGA    T     129      T     129          5.502
LGA    L     130      L     130          5.261
LGA    D     131      D     131          4.525
LGA    S     132      S     132          2.267
LGA    F     133      F     133          1.608
LGA    F     134      F     134          1.783
LGA    D     135      D     135          1.919
LGA    K     136      K     136          1.360
LGA    V     137      V     137          1.686
LGA    Y     138      Y     138          1.602
LGA    A     139      A     139          1.375
LGA    S     140      S     140          1.579
LGA    C     141      C     141          2.738
LGA    Q     142      Q     142          4.953
LGA    M     143      M     143          4.970
LGA    G     144      G     144          3.484
LGA    K     145      K     145          3.904
LGA    Y     146      Y     146          2.464
LGA    K     147      K     147          1.581
LGA    P     148      P     148          1.133
LGA    N     149      N     149          1.018
LGA    E     150      E     150          0.807
LGA    D     151      D     151          0.913
LGA    I     152      I     152          1.588
LGA    F     153      F     153          1.232
LGA    L     154      L     154          1.167
LGA    E     155      E     155          2.354
LGA    M     156      M     156          2.270
LGA    I     157      I     157          1.537
LGA    A     158      A     158          2.538
LGA    D     159      D     159          3.011
LGA    S     160      S     160          1.863
LGA    G     161      G     161          2.342
LGA    M     162      M     162          1.799
LGA    K     163      K     163          2.270
LGA    P     164      P     164          1.949
LGA    E     165      E     165          1.978
LGA    E     166      E     166          2.322
LGA    T     167      T     167          2.250
LGA    L     168      L     168          1.497
LGA    F     169      F     169          0.703
LGA    I     170      I     170          0.803
LGA    D     171      D     171          1.256
LGA    D     172      D     172          2.122
LGA    G     173      G     173          2.501
LGA    P     174      P     174          2.733
LGA    A     175      A     175          2.927
LGA    N     176      N     176          1.957
LGA    V     177      V     177          1.398
LGA    A     178      A     178          1.658
LGA    T     179      T     179          1.912
LGA    A     180      A     180          1.208
LGA    E     181      E     181          0.945
LGA    R     182      R     182          1.316
LGA    L     183      L     183          1.947
LGA    G     184      G     184          1.690
LGA    F     185      F     185          1.291
LGA    H     186      H     186          1.244
LGA    T     187      T     187          0.818
LGA    Y     188      Y     188          1.754
LGA    C     189      C     189          2.017
LGA    P     190      P     190          1.902
LGA    D     191      D     191          3.870
LGA    N     192      N     192          7.018
LGA    G     193      G     193          7.040
LGA    E     194      E     194          8.380
LGA    N     195      N     195         13.067
LGA    W     196      W     196         14.943
LGA    I     197      I     197          2.241
LGA    P     198      P     198          3.383
LGA    A     199      A     199          2.869
LGA    I     200      I     200          1.667
LGA    T     201      T     201          2.789
LGA    R     202      R     202          3.613
LGA    L     203      L     203          3.169
LGA    L     204      L     204          3.038

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  131  140    4.0    111    1.88    66.607    61.633     5.616

LGA_LOCAL      RMSD =  1.876  Number of atoms =  111  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.524  Number of atoms =  131 
Std_ALL_ATOMS  RMSD =  3.483  (standard rmsd on all 131 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.240382 * X  +   0.957969 * Y  +  -0.156562 * Z  +  51.358612
  Y_new =  -0.882003 * X  +  -0.282912 * Y  +  -0.376870 * Z  +  37.643108
  Z_new =  -0.405323 * X  +   0.047495 * Y  +   0.912939 * Z  +   4.529353 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.051977   -3.089615  [ DEG:     2.9781   -177.0219 ]
  Theta =   0.417332    2.724260  [ DEG:    23.9114    156.0886 ]
  Phi   =  -1.836875    1.304718  [ DEG:  -105.2452     74.7548 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0379TS677_2-D1                               
REMARK     2: T0379_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0379TS677_2-D1.T0379_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  131  140   4.0  111   1.88  61.633     3.48
REMARK  ---------------------------------------------------------- 
MOLECULE T0379TS677_2-D1
PFRMAT TS
TARGET T0379
MODEL  2  REFINED
PARENT 1qh9_A
ATOM      3  CA  MET     1      49.050  20.020 -12.339  1.00 98.00
ATOM      4  CA  ILE     2      50.644  19.889  -8.892  1.00 98.00
ATOM      5  CA  ARG     3      49.882  23.062  -6.933  1.00 98.00
ATOM      6  CA  ASN     4      51.128  21.813  -3.581  1.00 52.00
ATOM      7  CA  ILE     5      53.512  19.387  -1.943  1.00 40.00
ATOM      8  CA  VAL     6      53.074  17.363   1.225  1.00 34.00
ATOM      9  CA  PHE     7      56.396  16.406   2.832  1.00  8.00
ATOM     10  CA  ASP     8      57.415  13.615   5.172  1.00  4.00
ATOM     11  CA  LEU     9      59.854  14.528   7.970  1.00  2.00
ATOM     12  CA  GLY    10      62.459  11.880   8.891  1.00 17.00
ATOM     13  CA  GLY    11      64.463  10.488   6.002  1.00  6.00
ATOM     14  CA  VAL    12      62.865  12.866   3.509  1.00 32.00
ATOM     15  CA  LEU    13      63.998  16.241   4.857  1.00 50.00
ATOM     16  CA  ILE    14      65.908  15.501   8.042  1.00 86.00
ATOM     17  CA  HIS    15      68.660  12.983   8.641  1.00 91.00
ATOM     18  CA  LEU    16      68.029  10.854  11.735  1.00 99.00
ATOM     93  CA  LEU    84      67.714  18.772  16.782  1.00 97.00
ATOM     94  CA  GLU    85      68.092  17.004  13.442  1.00 99.00
ATOM     95  CA  GLU    86      70.079  18.400  10.512  1.00 99.00
ATOM     96  CA  ILE    87      68.495  18.440   7.059  1.00 92.00
ATOM     97  CA  SER    88      69.995  16.696   4.075  1.00 81.00
ATOM     98  CA  ALA    89      72.436  18.983   2.237  1.00 99.00
ATOM     99  CA  GLU    90      70.251  19.510  -0.831  1.00 99.00
ATOM    100  CA  LYS    91      67.149  20.238   1.267  1.00 99.00
ATOM    101  CA  PHE    92      67.507  23.999   2.005  1.00 99.00
ATOM    102  CA  ASP    93      68.213  25.075  -1.583  1.00 99.00
ATOM    103  CA  TYR    94      65.574  22.709  -2.961  1.00 73.00
ATOM    104  CA  ILE    95      62.881  24.077  -0.659  1.00 53.00
ATOM    105  CA  ASP    96      63.804  27.649  -1.533  1.00 36.00
ATOM    106  CA  SER    97      63.660  26.848  -5.225  1.00 42.00
ATOM    107  CA  LEU    98      60.282  25.082  -5.047  1.00 55.00
ATOM    108  CA  ARG    99      58.814  28.010  -3.149  1.00 61.00
ATOM    109  CA  PRO   100      60.245  30.261  -5.865  1.00 42.00
ATOM    111  CA  ASP   101      55.064  29.185  -6.261  1.00 49.00
ATOM    112  CA  TYR   102      54.107  25.776  -4.861  1.00 32.00
ATOM    113  CA  ARG   103      52.331  25.487  -1.513  1.00 16.00
ATOM    114  CA  LEU   104      54.533  23.406   0.795  1.00  0.00
ATOM    115  CA  PHE   105      53.421  21.530   3.908  1.00  7.00
ATOM    116  CA  LEU   106      54.673  18.887   6.351  1.00 10.00
ATOM    117  CA  LEU   107      52.523  16.023   7.629  1.00 36.00
ATOM    118  CA  SER   108      54.128  14.176  10.547  1.00 55.00
ATOM    119  CA  ASN   109      53.255  12.292  13.738  1.00 82.00
ATOM    120  CA  THR   110      54.579  14.626  16.419  1.00 88.00
ATOM    121  CA  ASN   111      52.916  17.681  17.920  1.00 99.00
ATOM    122  CA  PRO   112      52.794  20.870  15.835  1.00 83.00
ATOM    123  CA  TYR   113      55.061  22.471  18.448  1.00 70.00
ATOM    124  CA  VAL   114      57.821  19.890  17.928  1.00 54.00
ATOM    125  CA  LEU   115      57.494  19.903  14.125  1.00 70.00
ATOM    126  CA  ASP   116      57.910  23.690  14.285  1.00 66.00
ATOM    127  CA  LEU   117      60.977  23.248  16.517  1.00 87.00
ATOM    128  CA  ALA   118      62.777  20.919  14.108  1.00 99.00
ATOM    129  CA  PRO   125      62.328  23.262  11.112  1.00 88.00
ATOM    130  CA  SER   126      63.078  26.377  13.173  1.00 99.00
ATOM    131  CA  GLY   127      66.302  24.886  14.569  1.00 99.00
ATOM    132  CA  ARG   128      67.255  24.095  10.973  1.00 99.00
ATOM    133  CA  THR   129      66.308  27.666  10.026  1.00 95.00
ATOM    134  CA  LEU   130      63.859  26.294   7.467  1.00 99.00
ATOM    135  CA  ASP   131      60.637  27.474   9.126  1.00 36.00
ATOM    136  CA  SER   132      59.812  30.282   6.665  1.00  9.00
ATOM    137  CA  PHE   133      59.582  27.832   3.768  1.00 20.00
ATOM    138  CA  PHE   134      56.461  25.985   4.911  1.00 25.00
ATOM    139  CA  ASP   135      52.823  27.049   4.599  1.00 34.00
ATOM    140  CA  LYS   136      51.390  24.310   6.818  1.00 37.00
ATOM    141  CA  VAL   137      52.818  22.198   9.611  1.00 55.00
ATOM    142  CA  TYR   138      50.425  19.314  10.225  1.00 54.00
ATOM    143  CA  ALA   139      50.204  16.608  12.871  1.00 62.00
ATOM    144  CA  SER   140      48.024  13.491  12.885  1.00 61.00
ATOM    145  CA  CYS   141      46.899  14.340  16.440  1.00 81.00
ATOM    146  CA  GLN   142      43.637  16.028  15.395  1.00 69.00
ATOM    147  CA  MET   143      42.350  12.755  13.883  1.00 79.00
ATOM    148  CA  GLY   144      43.570  10.523  16.740  1.00 47.00
ATOM    149  CA  LYS   145      44.941   7.951  14.287  1.00 45.00
ATOM    150  CA  TYR   146      48.170   7.399  12.353  1.00 41.00
ATOM    151  CA  LYS   147      49.132   6.642   8.755  1.00 68.00
ATOM    152  CA  PRO   148      48.325   4.899   6.495  1.00 64.00
ATOM    153  CA  ASN   149      44.768   5.409   7.801  1.00 79.00
ATOM    154  CA  GLU   150      43.114   7.449   5.038  1.00 64.00
ATOM    155  CA  ASP   151      41.759   9.959   7.554  1.00 45.00
ATOM    156  CA  ILE   152      45.284  11.316   7.926  1.00 54.00
ATOM    157  CA  PHE   153      45.582  11.895   4.183  1.00 82.00
ATOM    158  CA  LEU   154      42.275  13.808   4.021  1.00 74.00
ATOM    159  CA  GLU   155      43.644  16.103   6.679  1.00 71.00
ATOM    160  CA  MET   156      46.547  16.996   4.377  1.00 97.00
ATOM    161  CA  ILE   157      44.016  17.524   1.605  1.00 73.00
ATOM    162  CA  ALA   158      41.774  19.766   3.744  1.00 38.00
ATOM    163  CA  ASP   159      44.535  21.905   5.246  1.00 35.00
ATOM    164  CA  SER   160      46.009  22.655   1.802  1.00 49.00
ATOM    165  CA  GLY   161      42.652  23.624   0.306  1.00 53.00
ATOM    166  CA  MET   162      43.459  21.540  -2.781  1.00 51.00
ATOM    167  CA  LYS   163      42.282  18.249  -4.261  1.00 57.00
ATOM    168  CA  PRO   164      44.618  15.242  -3.807  1.00 91.00
ATOM    169  CA  GLU   165      45.475  15.012  -7.518  1.00 84.00
ATOM    170  CA  GLU   166      47.034  18.478  -7.247  1.00 61.00
ATOM    171  CA  THR   167      49.108  17.662  -4.145  1.00 46.00
ATOM    172  CA  LEU   168      52.379  15.801  -4.625  1.00 33.00
ATOM    173  CA  PHE   169      52.963  13.373  -1.764  1.00 61.00
ATOM    174  CA  ILE   170      56.692  13.115  -1.048  1.00 61.00
ATOM    175  CA  ASP   171      58.022  10.415   1.268  1.00 61.00
ATOM    176  CA  ASP   172      61.053   8.232   1.935  1.00 80.00
ATOM    177  CA  GLY   173      58.853   5.441   3.325  1.00 96.00
ATOM    178  CA  PRO   174      57.559   3.020   0.716  1.00 46.00
ATOM    179  CA  ALA   175      54.667   1.867   2.934  1.00 43.00
ATOM    180  CA  ASN   176      53.533   5.496   3.260  1.00 62.00
ATOM    181  CA  VAL   177      53.915   6.121  -0.485  1.00 60.00
ATOM    182  CA  ALA   178      51.702   3.071  -0.990  1.00 53.00
ATOM    183  CA  THR   179      49.059   4.488   1.338  1.00 58.00
ATOM    184  CA  ALA   180      49.160   7.884  -0.360  1.00 79.00
ATOM    185  CA  GLU   181      49.080   6.249  -3.784  1.00 66.00
ATOM    186  CA  ARG   182      45.923   4.282  -2.884  1.00 55.00
ATOM    187  CA  LEU   183      44.300   7.440  -1.478  1.00 37.00
ATOM    188  CA  GLY   184      44.770   9.392  -4.713  1.00 39.00
ATOM    189  CA  PHE   185      47.873  11.558  -4.268  1.00 20.00
ATOM    190  CA  HIS   186      50.441  11.595  -7.092  1.00 25.00
ATOM    191  CA  THR   187      53.383   9.964  -5.293  1.00 54.00
ATOM    192  CA  TYR   188      57.115  10.667  -5.231  1.00 70.00
ATOM    193  CA  CYS   189      59.292   8.093  -3.430  1.00 64.00
ATOM    194  CA  PRO   190      62.588   9.397  -2.092  1.00 66.00
ATOM    195  CA  ASP   191      65.017   6.472  -2.281  1.00 55.00
ATOM    196  CA  ASN   192      68.563   7.523  -1.445  1.00 47.00
ATOM    197  CA  GLY   193      70.186   4.260  -0.288  1.00 51.00
ATOM    198  CA  GLU   194      68.960   1.873  -3.005  1.00 99.00
ATOM    199  CA  ASN   195      66.122   0.113  -1.190  1.00 99.00
ATOM    200  CA  TRP   196      63.245  -1.642  -2.984  1.00 99.00
ATOM    215  CA  ILE   197      65.045  16.594  -3.481  1.00 99.00
ATOM    216  CA  PRO   198      67.277  17.918  -6.281  1.00 99.00
ATOM    217  CA  ALA   199      65.379  15.658  -8.693  1.00 53.00
ATOM    218  CA  ILE   200      62.037  16.849  -7.290  1.00 43.00
ATOM    219  CA  THR   201      62.750  20.397  -8.565  1.00 69.00
ATOM    220  CA  ARG   202      63.435  19.108 -12.092  1.00 64.00
ATOM    221  CA  LEU   203      59.860  17.771 -12.286  1.00 64.00
ATOM    222  CA  LEU   204      58.524  21.341 -12.224  1.00 64.00
TER
END
