
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  145 (  145),  selected  142 , name T0380TS168_1
# Molecule2: number of CA atoms  142 ( 1146),  selected  142 , name T0380.pdb
# PARAMETERS: T0380TS168_1.T0380.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104         2 - 105         4.98    12.45
  LCS_AVERAGE:     56.87

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        53 - 75          2.00    12.59
  LCS_AVERAGE:      9.09

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         3 - 17          0.91    16.02
  LCS_AVERAGE:      4.66

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     I       2     I       2      5   16  104     3    4    8   19   27   36   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D       3     D       3     15   16  104     3   11   16   22   29   38   46   62   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E       4     E       4     15   16  104     9   13   16   22   29   38   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K       5     K       5     15   16  104     9   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     F       6     F       6     15   16  104     5   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L       7     L       7     15   16  104     6   13   16   22   29   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     I       8     I       8     15   16  104     9   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E       9     E       9     15   16  104     9   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     S      10     S      10     15   16  104     9   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      11     N      11     15   16  104     9   13   16   22   29   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      12     E      12     15   16  104     9   13   16   22   32   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      13     L      13     15   16  104     9   13   16   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      14     V      14     15   16  104     9   13   15   22   29   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      15     E      15     15   16  104     9   13   15   22   29   37   42   57   69   79   88   95   97  101  102  103  105  105  105  105 
LCS_GDT     S      16     S      16     15   16  104     3   13   16   22   29   38   55   65   72   80   90   96   97  101  102  103  105  105  105  105 
LCS_GDT     S      17     S      17     15   16  104     4   10   16   25   32   40   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      18     K      18      4   16  104     3   11   14   19   24   34   40   52   58   65   76   89   95  101  102  103  105  105  105  105 
LCS_GDT     I      19     I      19      4    7  104     3    7   12   19   31   36   48   56   66   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      20     V      20      4    7  104     3    7   20   24   33   39   51   63   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      21     M      21      5    7  104     3   12   20   24   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      22     V      22      5    7  104     3   10   17   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      23     G      23      5    8  104     5   12   15   20   29   42   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T      24     T      24      5    9  104     3    5   11   18   31   43   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      25     N      25      5   13  104     4    8   15   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      26     G      26      3   13  104     3    5   12   22   29   38   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      27     E      27      3   13  104     3    3   13   22   29   37   52   61   71   79   89   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      28     N      28      3   13  104     3    7   16   22   29   38   55   64   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      29     G      29      9   13  104     4   10   15   26   32   40   46   57   67   79   87   96   98  101  102  103  105  105  105  105 
LCS_GDT     Y      30     Y      30      9   13  104     3   10   15   25   30   36   45   57   64   73   83   90   97  101  102  103  105  105  105  105 
LCS_GDT     P      31     P      31      9   13  104     4   10   15   26   32   41   49   59   70   80   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      32     N      32      9   13  104     4   10   15   25   32   42   50   60   71   80   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     I      33     I      33      9   13  104     3   10   15   25   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      34     K      34      9   13  104     3   10   15   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     A      35     A      35      9   13  104     3    8   15   25   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      36     M      36      9   13  104     2   11   17   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      37     M      37      9   13  104     5   11   17   26   33   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     R      38     R      38      4   12  104     3    9   14   23   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      39     L      39      4   12  104     3    8   14   26   32   40   46   55   62   75   85   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      40     K      40      4   12  104     3    5    8   22   33   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     H      41     H      41      4    8  104     3    3    7   12   16   21   26   51   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D      42     D      42      4    8  104     3    4    7   13   19   32   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      43     G      43      6    8  104     4    4    6    7   14   30   36   48   59   71   82   89   98  101  102  103  105  105  105  105 
LCS_GDT     L      44     L      44      6    8  104     4    4    6    7   11   14   25   34   54   65   78   89   98  101  102  103  105  105  105  105 
LCS_GDT     K      45     K      45      6    8  104     4    4   10   23   33   39   51   63   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      46     K      46      6    8  104     4    5   12   23   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     F      47     F      47      6    8  104     3    4    9   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     W      48     W      48      6    8  104     3    4   17   26   32   40   46   57   69   80   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      49     L      49      4    8  104     3    4   17   26   32   40   47   60   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     S      50     S      50      4    8  104     3    4    7   13   19   34   44   57   70   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T      51     T      51      4    8  104     3    8   10   14   22   33   46   59   70   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      52     N      52      4   14  104     3    4    5   10   16   29   44   57   70   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T      53     T      53      4   23  104     3    4    8   17   33   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     S      54     S      54      4   23  104     3    8   12   18   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T      55     T      55     11   23  104     4   10   15   20   31   39   48   61   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     R      56     R      56     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      57     M      57     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      58     V      58     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      59     E      59     11   23  104     9   14   20   24   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     R      60     R      60     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      61     L      61     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      62     K      62     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      63     K      63     11   23  104     9   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      64     N      64     11   23  104     4   11   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      65     N      65     11   23  104     4   11   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      66     K      66      4   23  104     3    3   10   22   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     I      67     I      67      4   23  104     4   12   19   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     C      68     C      68      4   23  104     3   10   15   26   33   44   53   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      69     L      69      4   23  104     4   12   17   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     Y      70     Y      70      4   23  104     3   14   20   24   33   40   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     F      71     F      71      5   23  104     6   14   20   24   33   40   55   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      72     V      72      5   23  104     3   11   20   24   33   42   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D      73     D      73      8   23  104     6   14   20   24   33   39   50   62   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D      74     D      74      8   23  104     3    7   13   19   33   39   48   57   65   78   89   96   98  101  102  103  105  105  105  105 
LCS_GDT     N      75     N      75      8   23  104     4   11   19   23   33   39   48   57   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      76     K      76      8   22  104     3    8   14   23   33   39   48   56   70   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     F      77     F      77      8   19  104     0    8   13   16   22   30   44   51   60   70   81   89   98  101  102  103  105  105  105  105 
LCS_GDT     A      78     A      78      8   19  104     3    8   13   22   32   39   48   56   66   79   89   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      79     G      79      8   19  104     3    8   13   23   33   39   48   57   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      80     L      80      8   19  104     3    8   13   19   31   39   48   62   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      81     M      81      6   19  104     3    5   10   19   29   37   42   55   72   81   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      82     L      82      5   19  104     3    4   13   20   29   38   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     V      83     V      83      4   19  104     3    7   13   23   33   39   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G      84     G      84      4   19  104     3    7   15   23   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T      85     T      85      4   19  104     4   14   20   24   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     I      86     I      86      4   18  104     8   14   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      87     E      87      4   18  104     4    9   20   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     I      88     I      88      4   15  104     9   11   17   26   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      89     L      89      4   15  104     8   11   17   26   32   40   51   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     H      90     H      90      3   15  104     3    5   14   22   30   40   46   57   69   80   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D      91     D      91      9   15  104     2    4    9   16   28   40   52   59   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     R      92     R      92      9   15  104     8    8   11   19   29   41   52   59   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     A      93     A      93      9   15  104     8    9   19   24   33   44   56   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     S      94     S      94      9   15  104     8   14   20   24   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     K      95     K      95      9   15  104     8    8   11   23   33   44   56   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     E      96     E      96      9   15  104     8    8   11   18   28   44   56   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     M      97     M      97      9   15  104     8    8   14   23   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     L      98     L      98      9   15  104     8    8   14   23   33   44   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     W      99     W      99      9   15  104     8    8   11   18   26   44   56   65   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     T     100     T     100      4   15  104     0    3    7   11   27   34   46   57   71   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     D     101     D     101      4    5  104     0    3    4    6   18   32   46   57   70   80   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     G     102     G     102      4    5  104     2    3    5   15   22   28   37   44   54   62   70   80   92   95   99  103  105  105  105  105 
LCS_GDT     C     103     C     103      3    5  104     0    3    4   10   16   23   31   44   49   57   66   76   84   95   98  102  105  105  105  105 
LCS_GDT     E     104     E     104      0    4  104     0    0    3    5    5    7    8   13   17   26   30   36   41   56   60   67   75   78   85   93 
LCS_GDT     I     105     I     105      3    5  104     3    3    4    7    9   12   13   13   14   18   22   23   25   28   37   40   42   52   62   66 
LCS_GDT     Y     106     Y     106      3    5   18     3    3    4    7    9   12   13   13   14   18   22   23   25   28   32   36   40   46   59   61 
LCS_GDT     Y     107     Y     107      3    5   18     3    3    4    7    9   12   13   13   14   18   22   23   25   28   32   36   39   46   54   61 
LCS_GDT     P     108     P     108      3    5   18     1    3    4    7    9   12   13   13   14   18   22   23   25   28   30   33   39   44   51   56 
LCS_GDT     L     109     L     109      3    5   18     1    3    4    7    9   12   13   13   14   18   22   23   25   28   30   33   39   44   51   56 
LCS_GDT     G     110     G     110      3    4   18     3    3    3    5    5    6   10   10   14   17   22   23   25   28   30   33   38   44   51   56 
LCS_GDT     I     111     I     111      4    5   18     3    3    5    5    5    6    7   11   12   13   16   22   24   28   32   36   39   44   51   61 
LCS_GDT     D     112     D     112      4    5   18     3    4    5    5    7    8   12   13   15   18   22   23   25   28   30   36   39   44   51   56 
LCS_GDT     D     113     D     113      4    5   18     3    4    5    5    6    9   11   13   15   17   22   23   25   28   29   33   37   41   44   48 
LCS_GDT     P     114     P     114      4    8   18     3    4    5    7    9   12   13   13   15   18   22   23   25   28   30   33   38   41   44   48 
LCS_GDT     D     115     D     115      4    8   18     3    4    5    7    9   12   13   13   15   18   22   23   25   28   30   33   38   46   48   57 
LCS_GDT     Y     116     Y     116      3    8   18     0    3    5    6    8   10   12   13   15   18   22   23   25   32   35   39   42   48   54   60 
LCS_GDT     T     117     T     117      3    8   18     3    3    4    6    8   10   11   13   15   17   20   30   32   37   57   61   66   76   96  101 
LCS_GDT     A     118     A     118      3    8   18     3    4    5    6    9   13   18   24   31   41   53   70   76   89   99  102  105  105  105  105 
LCS_GDT     L     119     L     119      3    8   18     3   12   17   26   32   43   56   65   72   82   90   96   98  101  102  103  105  105  105  105 
LCS_GDT     C     120     C     120      5    8   18     3    3   11   22   29   38   45   61   72   79   88   96   98  101  102  103  105  105  105  105 
LCS_GDT     F     121     F     121      5    8   18     3    4    6    7   13   22   29   35   47   54   59   68   78   84   91   95  100  103  103  104 
LCS_GDT     T     122     T     122      5    8   18     3    3    6    7   11   12   13   14   25   30   32   37   49   53   55   58   63   68   75   81 
LCS_GDT     A     123     A     123      5    8   18     3    4    6    7   11   12   12   14   16   18   20   27   27   32   35   38   45   47   52   54 
LCS_GDT     E     124     E     124      5    8   18     3    5    6    7   11   12   12   14   16   18   20   22   24   26   28   31   32   34   40   43 
LCS_GDT     W     125     W     125      5    8   18     3    5    6    7   11   12   12   14   16   18   20   22   23   26   35   38   39   43   44   48 
LCS_GDT     G     126     G     126      5    8   18     3    5    6    7   11   12   12   14   16   18   24   27   32   37   43   45   47   50   52   55 
LCS_GDT     N     127     N     127      5    8   17     3    5    6    7   11   12   12   14   21   22   26   33   35   39   43   45   54   59   63   76 
LCS_GDT     Y     128     Y     128      5    8   17     3    5    6    7   11   11   12   12   29   34   39   44   47   57   58   76   83   87   99  103 
LCS_GDT     Y     129     Y     129      3    4   16     3    3    4    4    6   10   11   13   16   20   25   28   32   37   53   60   83   93   99  103 
LCS_GDT     R     130     R     130      3    4   16     3    3    4    4    5    6   10   12   16   19   25   28   32   37   44   54   63   69   72   76 
LCS_GDT     H     131     H     131      4    5   16     3    3    4    4    5    5    9   12   16   19   25   28   32   37   44   50   53   60   66   72 
LCS_GDT     L     132     L     132      4    5   16     3    3    4    4    5    5    7   12   14   20   25   28   34   54   67   73   83   93   99  103 
LCS_GDT     K     133     K     133      4    5   16     3    3    4    4    7    9   11   14   16   20   25   28   45   67   72   76   84   93   99  103 
LCS_GDT     N     134     N     134      4    5   16     3    4    4    5    7    9   11   14   17   30   37   53   58   67   72   81   84   93   99  103 
LCS_GDT     I     135     I     135      4    6   16     3    4    4    5    7   10   11   14   17   30   44   53   58   67   74   81   89   95   99  103 
LCS_GDT     T     136     T     136      4    6   16     3    4    4    5    7   10   11   14   16   21   28   53   58   67   72   81   89   95   99  103 
LCS_GDT     F     137     F     137      4    6   16     3    4    4    5    6   10   11   14   16   21   25   53   58   64   72   81   86   95   99  103 
LCS_GDT     K     138     K     138      4    6   16     0    3    4    5    7   10   11   14   16   35   44   53   66   73   83   87   90   95  100  103 
LCS_GDT     I     139     I     139      4    6   16     0    3    4    5   14   17   19   22   29   53   58   61   70   78   83   89   94   98  100  104 
LCS_GDT     D     140     D     140      4    6   16     0    3    4   12   14   17   19   22   29   44   52   56   65   70   83   87   90   95   99  103 
LCS_GDT     E     141     E     141      3    3   16     0    3    9   12   14   17   19   35   41   47   58   59   65   75   83   87   90   95   99  103 
LCS_GDT     I     142     I     142      3    3   16     0    3    9   10   13   16   19   25   31   39   45   54   59   67   71   74   80   83   90  100 
LCS_GDT     Y     143     Y     143      3    3   16     0    3    3    6    6    8   15   19   22   32   35   46   57   62   69   72   77   82   85   90 
LCS_AVERAGE  LCS_A:  23.54  (   4.66    9.09   56.87 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     14     20     26     33     44     56     65     72     82     90     96     98    101    102    103    105    105    105    105 
GDT PERCENT_CA   6.34   9.86  14.08  18.31  23.24  30.99  39.44  45.77  50.70  57.75  63.38  67.61  69.01  71.13  71.83  72.54  73.94  73.94  73.94  73.94
GDT RMS_LOCAL    0.21   0.57   0.91   1.44   1.88   2.21   2.58   2.81   3.14   3.41   3.62   3.82   3.97   4.04   4.11   4.21   4.38   4.38   4.38   4.38
GDT RMS_ALL_CA  17.21  12.87  12.80  12.55  12.39  12.24  12.41  12.44  12.92  12.58  12.48  12.55  12.65  12.59  12.64  12.59  12.55  12.55  12.55  12.55

#      Molecule1      Molecule2       DISTANCE
LGA    I       2      I       2          3.814
LGA    D       3      D       3          5.174
LGA    E       4      E       4          3.924
LGA    K       5      K       5          1.972
LGA    F       6      F       6          2.334
LGA    L       7      L       7          3.075
LGA    I       8      I       8          2.039
LGA    E       9      E       9          0.750
LGA    S      10      S      10          2.293
LGA    N      11      N      11          3.366
LGA    E      12      E      12          2.651
LGA    L      13      L      13          1.672
LGA    V      14      V      14          3.513
LGA    E      15      E      15          5.025
LGA    S      16      S      16          3.999
LGA    S      17      S      17          3.907
LGA    K      18      K      18          7.792
LGA    I      19      I      19          6.250
LGA    V      20      V      20          4.352
LGA    M      21      M      21          1.750
LGA    V      22      V      22          2.243
LGA    G      23      G      23          3.918
LGA    T      24      T      24          3.803
LGA    N      25      N      25          3.186
LGA    G      26      G      26          3.107
LGA    E      27      E      27          5.104
LGA    N      28      N      28          4.009
LGA    G      29      G      29          6.182
LGA    Y      30      Y      30          6.910
LGA    P      31      P      31          4.968
LGA    N      32      N      32          4.493
LGA    I      33      I      33          3.279
LGA    K      34      K      34          2.117
LGA    A      35      A      35          0.982
LGA    M      36      M      36          2.446
LGA    M      37      M      37          2.774
LGA    R      38      R      38          2.114
LGA    L      39      L      39          6.428
LGA    K      40      K      40          3.194
LGA    H      41      H      41          4.973
LGA    D      42      D      42          3.944
LGA    G      43      G      43          7.844
LGA    L      44      L      44          8.409
LGA    K      45      K      45          4.438
LGA    K      46      K      46          1.160
LGA    F      47      F      47          2.431
LGA    W      48      W      48          4.933
LGA    L      49      L      49          4.186
LGA    S      50      S      50          4.860
LGA    T      51      T      51          4.569
LGA    N      52      N      52          4.823
LGA    T      53      T      53          2.502
LGA    S      54      S      54          2.611
LGA    T      55      T      55          5.769
LGA    R      56      R      56          3.269
LGA    M      57      M      57          2.460
LGA    V      58      V      58          2.668
LGA    E      59      E      59          3.162
LGA    R      60      R      60          2.532
LGA    L      61      L      61          1.835
LGA    K      62      K      62          2.432
LGA    K      63      K      63          3.637
LGA    N      64      N      64          2.409
LGA    N      65      N      65          1.969
LGA    K      66      K      66          3.603
LGA    I      67      I      67          2.565
LGA    C      68      C      68          3.960
LGA    L      69      L      69          2.940
LGA    Y      70      Y      70          3.657
LGA    F      71      F      71          3.784
LGA    V      72      V      72          3.165
LGA    D      73      D      73          5.577
LGA    D      74      D      74          8.020
LGA    N      75      N      75          7.065
LGA    K      76      K      76          7.463
LGA    F      77      F      77         10.438
LGA    A      78      A      78          7.495
LGA    G      79      G      79          6.578
LGA    L      80      L      80          5.151
LGA    M      81      M      81          5.929
LGA    L      82      L      82          3.637
LGA    V      83      V      83          3.607
LGA    G      84      G      84          2.183
LGA    T      85      T      85          2.075
LGA    I      86      I      86          1.685
LGA    E      87      E      87          0.993
LGA    I      88      I      88          2.764
LGA    L      89      L      89          3.990
LGA    H      90      H      90          5.209
LGA    D      91      D      91          4.363
LGA    R      92      R      92          4.545
LGA    A      93      A      93          1.920
LGA    S      94      S      94          1.599
LGA    K      95      K      95          2.945
LGA    E      96      E      96          3.225
LGA    M      97      M      97          1.971
LGA    L      98      L      98          1.625
LGA    W      99      W      99          3.248
LGA    T     100      T     100          4.805
LGA    D     101      D     101          5.834
LGA    G     102      G     102         10.543
LGA    C     103      C     103         10.942
LGA    E     104      E     104         17.588
LGA    I     105      I     105         21.274
LGA    Y     106      Y     106         21.162
LGA    Y     107      Y     107         25.089
LGA    P     108      P     108         32.072
LGA    L     109      L     109         35.392
LGA    G     110      G     110         36.370
LGA    I     111      I     111         32.671
LGA    D     112      D     112         34.566
LGA    D     113      D     113         34.164
LGA    P     114      P     114         30.125
LGA    D     115      D     115         25.687
LGA    Y     116      Y     116         21.294
LGA    T     117      T     117         14.528
LGA    A     118      A     118          9.116
LGA    L     119      L     119          3.272
LGA    C     120      C     120          5.532
LGA    F     121      F     121         10.402
LGA    T     122      T     122         17.231
LGA    A     123      A     123         21.476
LGA    E     124      E     124         28.220
LGA    W     125      W     125         28.035
LGA    G     126      G     126         22.806
LGA    N     127      N     127         21.226
LGA    Y     128      Y     128         16.490
LGA    Y     129      Y     129         17.106
LGA    R     130      R     130         21.099
LGA    H     131      H     131         21.505
LGA    L     132      L     132         16.968
LGA    K     133      K     133         17.772
LGA    N     134      N     134         17.728
LGA    I     135      I     135         16.880
LGA    T     136      T     136         16.282
LGA    F     137      F     137         15.824
LGA    K     138      K     138         14.714
LGA    I     139      I     139         13.228
LGA    D     140      D     140         16.362
LGA    E     141      E     141         16.892
LGA    I     142      I     142         19.316
LGA    Y     143      Y     143         22.118

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  145  142    4.0     65    2.81    36.620    32.113     2.236

LGA_LOCAL      RMSD =  2.807  Number of atoms =   65  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.361  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 11.294  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.433447 * X  +  -0.548226 * Y  +   0.715242 * Z  +  -9.229705
  Y_new =  -0.402218 * X  +  -0.592547 * Y  +  -0.697932 * Z  +  -5.589279
  Z_new =   0.806440 * X  +  -0.590199 * Y  +   0.036331 * Z  +  14.013268 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.509316    1.632277  [ DEG:   -86.4774     93.5226 ]
  Theta =  -0.938106   -2.203487  [ DEG:   -53.7495   -126.2505 ]
  Phi   =  -2.393547    0.748045  [ DEG:  -137.1402     42.8598 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0380TS168_1                                  
REMARK     2: T0380.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0380TS168_1.T0380.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  145  142   4.0   65   2.81  32.113    11.29
REMARK  ---------------------------------------------------------- 
MOLECULE T0380TS168_1
PFRMAT TS
TARGET T0380
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1     -22.980  -1.823   0.624  1.00 25.00           C
ATOM      2  CA  ILE     2     -24.962   1.288   1.562  1.00 25.00           C
ATOM      3  CA  ASP     3     -23.674   3.579  -1.162  1.00 25.00           C
ATOM      4  CA  GLU     4     -19.890   3.733  -0.576  1.00 25.00           C
ATOM      5  CA  LYS     5     -20.752   6.164   2.255  1.00 25.00           C
ATOM      6  CA  PHE     6     -19.645   3.574   4.849  1.00 25.00           C
ATOM      7  CA  LEU     7     -16.350   3.059   2.967  1.00 25.00           C
ATOM      8  CA  ILE     8     -15.783   6.845   2.875  1.00 25.00           C
ATOM      9  CA  GLU     9     -16.456   7.062   6.639  1.00 25.00           C
ATOM     10  CA  SER    10     -13.972   4.218   7.273  1.00 25.00           C
ATOM     11  CA  ASN    11     -11.342   6.006   5.137  1.00 25.00           C
ATOM     12  CA  GLU    12     -11.921   9.247   7.095  1.00 25.00           C
ATOM     13  CA  LEU    13     -11.531   7.350  10.398  1.00 25.00           C
ATOM     14  CA  VAL    14      -8.268   5.785   9.144  1.00 25.00           C
ATOM     15  CA  GLU    15      -6.974   9.242   8.124  1.00 25.00           C
ATOM     16  CA  SER    16      -7.184  10.087  11.846  1.00 25.00           C
ATOM     17  CA  SER    17      -6.845   6.895  13.992  1.00 25.00           C
ATOM     18  CA  LYS    18      -9.193   3.893  14.096  1.00 25.00           C
ATOM     19  CA  ILE    19      -8.844   0.791  11.918  1.00 25.00           C
ATOM     20  CA  VAL    20      -9.969  -2.218  13.916  1.00 25.00           C
ATOM     21  CA  MET    21      -8.300  -2.113  17.349  1.00 25.00           C
ATOM     22  CA  VAL    22      -7.949  -3.996  20.618  1.00 25.00           C
ATOM     23  CA  GLY    23      -6.711  -7.485  19.672  1.00 25.00           C
ATOM     24  CA  THR    24      -5.756 -10.258  22.168  1.00 25.00           C
ATOM     25  CA  ASN    25      -7.703 -12.857  24.217  1.00 25.00           C
ATOM     26  CA  GLY    26      -8.672 -15.808  26.429  1.00 25.00           C
ATOM     27  CA  GLU    27      -7.746 -19.322  27.679  1.00 25.00           C
ATOM     28  CA  ASN    28      -9.559 -18.934  31.001  1.00 25.00           C
ATOM     29  CA  GLY    29      -6.975 -16.454  32.303  1.00 25.00           C
ATOM     30  CA  TYR    30      -5.135 -13.208  31.729  1.00 25.00           C
ATOM     31  CA  PRO    31      -7.204 -10.674  29.869  1.00 25.00           C
ATOM     32  CA  ASN    32      -4.113  -9.184  28.258  1.00 25.00           C
ATOM     33  CA  ILE    33      -4.731  -6.405  25.784  1.00 25.00           C
ATOM     34  CA  LYS    34      -2.162  -4.957  23.319  1.00 25.00           C
ATOM     35  CA  ALA    35      -2.952  -3.076  20.068  1.00 25.00           C
ATOM     36  CA  MET    36      -3.215  -1.741  16.516  1.00 25.00           C
ATOM     37  CA  MET    37      -2.685  -0.651  12.881  1.00 25.00           C
ATOM     38  CA  ARG    38      -3.669  -0.975   9.214  1.00 25.00           C
ATOM     39  CA  LEU    39      -6.738  -1.759   7.159  1.00 25.00           C
ATOM     40  CA  LYS    40      -6.034  -2.585   3.463  1.00 25.00           C
ATOM     41  CA  HIS    41      -6.245  -3.331  -0.256  1.00 25.00           C
ATOM     42  CA  ASP    42      -9.605  -4.271  -1.782  1.00 25.00           C
ATOM     43  CA  GLY    43     -10.147  -8.070  -2.142  1.00 25.00           C
ATOM     44  CA  LEU    44     -13.763  -8.331  -0.966  1.00 25.00           C
ATOM     45  CA  LYS    45     -12.910 -10.339   2.128  1.00 25.00           C
ATOM     46  CA  LYS    46     -11.434  -8.168   4.861  1.00 25.00           C
ATOM     47  CA  PHE    47      -9.888  -5.724   7.314  1.00 25.00           C
ATOM     48  CA  TRP    48      -7.624  -5.546  10.337  1.00 25.00           C
ATOM     49  CA  LEU    49      -5.299  -4.963  13.303  1.00 25.00           C
ATOM     50  CA  SER    50      -2.940  -6.822  15.593  1.00 25.00           C
ATOM     51  CA  THR    51      -1.870 -10.339  16.743  1.00 25.00           C
ATOM     52  CA  ASN    52       1.559 -11.451  15.574  1.00 25.00           C
ATOM     53  CA  THR    53       3.867 -14.187  16.971  1.00 25.00           C
ATOM     54  CA  SER    54       5.533 -14.799  20.381  1.00 25.00           C
ATOM     55  CA  THR    55       4.272 -11.626  21.983  1.00 25.00           C
ATOM     56  CA  ARG    56       2.337 -13.257  24.859  1.00 25.00           C
ATOM     57  CA  MET    57      -0.656 -11.941  22.866  1.00 25.00           C
ATOM     58  CA  VAL    58      -0.024 -14.558  20.143  1.00 25.00           C
ATOM     59  CA  GLU    59       0.144 -17.315  22.796  1.00 25.00           C
ATOM     60  CA  ARG    60      -3.153 -16.090  24.311  1.00 25.00           C
ATOM     61  CA  LEU    61      -4.782 -16.109  20.845  1.00 25.00           C
ATOM     62  CA  LYS    62      -3.526 -19.677  20.247  1.00 25.00           C
ATOM     63  CA  LYS    63      -4.940 -20.769  23.634  1.00 25.00           C
ATOM     64  CA  ASN    64      -8.305 -19.897  22.170  1.00 25.00           C
ATOM     65  CA  ASN    65      -9.517 -18.326  18.946  1.00 25.00           C
ATOM     66  CA  LYS    66      -9.986 -14.733  20.155  1.00 25.00           C
ATOM     67  CA  ILE    67     -11.258 -11.181  20.847  1.00 25.00           C
ATOM     68  CA  CYS    68     -11.743  -7.419  21.379  1.00 25.00           C
ATOM     69  CA  LEU    69     -12.702  -4.853  18.735  1.00 25.00           C
ATOM     70  CA  TYR    70     -14.736  -3.192  15.961  1.00 25.00           C
ATOM     71  CA  PHE    71     -14.407   0.381  14.533  1.00 25.00           C
ATOM     72  CA  VAL    72     -14.234   4.078  15.477  1.00 25.00           C
ATOM     73  CA  ASP    73     -16.170   7.048  14.050  1.00 25.00           C
ATOM     74  CA  ASP    74     -18.362  10.053  14.846  1.00 25.00           C
ATOM     75  CA  ASN    75     -16.905  12.915  12.808  1.00 25.00           C
ATOM     76  CA  LYS    76     -19.302  11.812  10.111  1.00 25.00           C
ATOM     77  CA  PHE    77     -21.534   8.803  10.434  1.00 25.00           C
ATOM     78  CA  ALA    78     -19.693   5.432  10.154  1.00 25.00           C
ATOM     79  CA  GLY    79     -18.255   2.043  10.927  1.00 25.00           C
ATOM     80  CA  LEU    80     -15.882  -0.716   9.833  1.00 25.00           C
ATOM     81  CA  MET    81     -14.606  -4.224  10.639  1.00 25.00           C
ATOM     82  CA  LEU    82     -13.131  -6.983  12.681  1.00 25.00           C
ATOM     83  CA  VAL    83     -15.448  -9.898  12.038  1.00 25.00           C
ATOM     84  CA  GLY    84     -13.299 -12.735  13.320  1.00 25.00           C
ATOM     85  CA  THR    85     -12.256 -16.129  14.768  1.00 25.00           C
ATOM     86  CA  ILE    86      -8.816 -14.546  14.975  1.00 25.00           C
ATOM     87  CA  GLU    87      -7.099 -16.576  12.254  1.00 25.00           C
ATOM     88  CA  ILE    88      -4.091 -14.535  13.170  1.00 25.00           C
ATOM     89  CA  LEU    89      -3.440 -13.992   9.512  1.00 25.00           C
ATOM     90  CA  HIS    90      -2.099 -17.173   7.918  1.00 25.00           C
ATOM     91  CA  ASP    91       0.195 -20.198   8.094  1.00 25.00           C
ATOM     92  CA  ARG    92       2.564 -18.711   5.501  1.00 25.00           C
ATOM     93  CA  ALA    93       3.409 -16.916   2.225  1.00 25.00           C
ATOM     94  CA  SER    94       0.545 -14.442   2.812  1.00 25.00           C
ATOM     95  CA  LYS    95       1.804 -13.791   6.370  1.00 25.00           C
ATOM     96  CA  GLU    96       5.341 -13.185   5.033  1.00 25.00           C
ATOM     97  CA  MET    97       3.963 -10.741   2.426  1.00 25.00           C
ATOM     98  CA  LEU    98       2.015  -8.890   5.154  1.00 25.00           C
ATOM     99  CA  TRP    99       5.180  -8.671   7.299  1.00 25.00           C
ATOM    100  CA  THR   100       7.139  -7.292   4.312  1.00 25.00           C
ATOM    101  CA  ASP   101       4.404  -4.684   3.690  1.00 25.00           C
ATOM    102  CA  GLY   102       0.943  -4.175   2.346  1.00 25.00           C
ATOM    103  CA  CYS   103      -1.844  -5.687   4.430  1.00 25.00           C
ATOM    104  CA  GLU   104      -4.844  -8.012   5.017  1.00 25.00           C
ATOM    105  CA  ILE   105      -7.066 -10.103   7.362  1.00 25.00           C
ATOM    106  CA  TYR   106      -9.821 -10.300   9.976  1.00 25.00           C
ATOM    107  CA  TYR   107     -12.835 -11.808   8.221  1.00 25.00           C
ATOM    108  CA  PRO   108     -15.562 -13.589   6.314  1.00 25.00           C
ATOM    109  CA  LEU   109     -18.974 -15.222   6.614  1.00 25.00           C
ATOM    110  CA  GLY   110     -22.340 -16.903   6.059  1.00 25.00           C
ATOM    111  CA  ILE   111     -21.227 -19.040   8.985  1.00 25.00           C
ATOM    112  CA  ASP   112     -22.098 -16.296  11.457  1.00 25.00           C
ATOM    113  CA  ASP   113     -21.546 -15.444  15.168  1.00 25.00           C
ATOM    114  CA  PRO   114     -19.046 -12.891  13.866  1.00 25.00           C
ATOM    115  CA  ASP   115     -16.835 -11.903  16.813  1.00 25.00           C
ATOM    116  CA  TYR   116     -14.017  -9.388  17.067  1.00 25.00           C
ATOM    117  CA  THR   117     -10.290  -8.821  16.391  1.00 25.00           C
ATOM    118  CA  ALA   118      -6.868  -9.926  15.147  1.00 25.00           C
ATOM    119  CA  LEU   119      -4.819  -9.737  11.959  1.00 25.00           C
ATOM    120  CA  CYS   120      -2.804  -7.657   9.592  1.00 25.00           C
ATOM    121  CA  PHE   121      -0.345  -5.433  11.427  1.00 25.00           C
ATOM    122  CA  THR   122       1.931  -3.561  13.774  1.00 25.00           C
ATOM    123  CA  ALA   123       3.339  -0.156  14.941  1.00 25.00           C
ATOM    124  CA  GLU   124       5.831   0.709  17.637  1.00 25.00           C
ATOM    125  CA  TRP   125       3.962   2.865  20.068  1.00 25.00           C
ATOM    126  CA  GLY   126       0.894   3.320  17.788  1.00 25.00           C
ATOM    127  CA  ASN   127      -1.720   5.957  18.676  1.00 25.00           C
ATOM    128  CA  TYR   128      -5.457   5.297  19.194  1.00 25.00           C
ATOM    129  CA  TYR   129      -4.644   2.142  21.208  1.00 25.00           C
ATOM    130  CA  ARG   130      -2.176   4.124  23.363  1.00 25.00           C
ATOM    131  CA  HIS   131      -4.979   4.353  25.985  1.00 25.00           C
ATOM    132  CA  LEU   132      -7.735   5.616  23.759  1.00 25.00           C
ATOM    133  CA  LYS   133     -10.145   4.573  26.445  1.00 25.00           C
ATOM    134  CA  ASN   134     -12.233   2.660  29.045  1.00 25.00           C
ATOM    135  CA  ILE   135     -14.935   2.198  26.395  1.00 25.00           C
ATOM    136  CA  THR   136     -13.936  -1.287  25.243  1.00 25.00           C
ATOM    137  CA  PHE   137     -14.172  -0.802  21.492  1.00 25.00           C
ATOM    138  CA  LYS   138     -16.967  -3.380  21.270  1.00 25.00           C
ATOM    139  CA  ILE   139     -19.598  -5.462  19.570  1.00 25.00           C
ATOM    140  CA  ASP   140     -23.333  -5.660  19.811  1.00 25.00           C
ATOM    141  CA  GLU   141     -26.944  -4.881  20.688  1.00 25.00           C
ATOM    142  CA  ILE   142     -30.706  -4.627  21.451  1.00 25.00           C
ATOM    143  CA  TYR   143     -33.110  -2.624  19.318  1.00 25.00           C
ATOM    144  CA  ASN   144     -33.684   1.113  19.813  1.00 25.00           C
ATOM    145  CA  TYR   145     -34.054   4.576  18.235  1.00 25.00           C
TER
END
