
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  145 (  145),  selected  142 , name T0380TS168_2
# Molecule2: number of CA atoms  142 ( 1146),  selected  142 , name T0380.pdb
# PARAMETERS: T0380TS168_2.T0380.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104         2 - 105         4.94     9.07
  LCS_AVERAGE:     58.01

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        59 - 88          1.97     8.82
  LONGEST_CONTINUOUS_SEGMENT:    30        60 - 89          1.97     8.80
  LCS_AVERAGE:     10.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         2 - 15          0.87    10.35
  LCS_AVERAGE:      4.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     I       2     I       2     14   15  104     0    3   11   22   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D       3     D       3     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E       4     E       4     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K       5     K       5     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     F       6     F       6     14   15  104     8   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L       7     L       7     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     I       8     I       8     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E       9     E       9     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      10     S      10     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      11     N      11     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      12     E      12     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      13     L      13     14   15  104    10   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     V      14     V      14     14   15  104    10   14   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      15     E      15     14   15  104    10   14   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      16     S      16      4   15  104     3    3    8   14   25   42   51   66   82   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      17     S      17      4   13  104     3    7   12   15   17   29   39   55   65   79   84  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      18     K      18      5   13  104     3    4   20   25   29   38   45   56   66   73   79   88   93  105  112  113  115  116  116  118 
LCS_GDT     I      19     I      19      5   13  104     0    4   19   25   29   38   45   56   66   76   83   91  102  109  112  113  115  116  116  118 
LCS_GDT     V      20     V      20      5   13  104     0    4   13   21   33   44   57   65   81   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      21     M      21      5   13  104     0    4    6   12   18   29   46   61   81   89   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     V      22     V      22      5   13  104     0    3    6   11   22   33   50   73   81   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      23     G      23      4   13  104     3   14   15   24   37   48   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T      24     T      24      4   13  104     8   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      25     N      25      5   13  104     3   21   23   29   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      26     G      26      5   13  104     3    5   12   22   35   54   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      27     E      27      5   10  104     3    5   13   20   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      28     N      28      5   10  104     3    5   20   32   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      29     G      29      5   10  104     8   13   22   33   42   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     Y      30     Y      30      5   10  104     3    5   17   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     P      31     P      31      4   10  104     3    6   17   32   39   48   65   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      32     N      32      4    9  104     3   10   16   29   37   49   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     I      33     I      33      4    9  104     3   11   15   24   40   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      34     K      34      4    9  104     3   10   16   29   37   47   57   71   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     A      35     A      35      4    9  104     3    5   14   22   35   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      36     M      36      4    9  104     3    4   12   25   37   49   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      37     M      37      4    9  104     3    4   16   23   37   45   57   66   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     R      38     R      38      4    9  104     3    4    9   21   35   53   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      39     L      39      5    9  104     3    9   16   25   37   47   60   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      40     K      40      5    9  104     4    4    9   17   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     H      41     H      41      5    9  104     4    5   10   13   17   29   57   73   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D      42     D      42      5    9  104     4    4    7   13   16   20   41   61   79   88   94  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      43     G      43      5    9  104     4    4    6    8   12   14   32   51   65   79   91  100  105  108  112  113  115  116  116  118 
LCS_GDT     L      44     L      44      5    9  104     3    4    6    8   12   15   21   35   58   71   85   95  104  108  112  113  115  116  116  118 
LCS_GDT     K      45     K      45      5    9  104     3    4    6    8   12   22   35   56   71   83   92  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      46     K      46      5    8  104     3    6   15   27   38   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     F      47     F      47      6    8  104     3    5   14   24   37   53   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     W      48     W      48      6    8  104     3    5   12   25   37   46   66   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      49     L      49      6    8  104     3    5   19   29   37   54   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      50     S      50      6    8  104     3    5    6   12   30   41   56   69   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T      51     T      51      6    8  104     3    5    6   13   19   32   59   73   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      52     N      52      6    8  104     3    4    6   11   20   35   59   71   81   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T      53     T      53      4    8  104     3    6   11   22   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      54     S      54      4   16  104     3   13   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T      55     T      55     12   16  104    10   21   23   29   37   46   57   63   76   83   93  100  105  109  112  113  115  116  116  118 
LCS_GDT     R      56     R      56     12   16  104    12   21   23   29   37   46   57   63   76   86   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      57     M      57     12   16  104    10   21   23   29   37   47   57   72   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     V      58     V      58     12   16  104    12   21   23   29   37   47   57   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      59     E      59     12   30  104    12   21   23   29   37   47   57   64   77   89   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     R      60     R      60     12   30  104    12   21   23   29   38   47   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      61     L      61     12   30  104    12   21   23   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      62     K      62     12   30  104    12   21   23   29   38   47   58   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      63     K      63     12   30  104    10   21   23   29   38   47   57   69   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      64     N      64     12   30  104     5   11   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      65     N      65     12   30  104    10   21   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      66     K      66     12   30  104     3   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     I      67     I      67      4   30  104     3    9   18   29   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     C      68     C      68      4   30  104     3   11   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      69     L      69      4   30  104     3    5   14   25   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     Y      70     Y      70      4   30  104     8   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     F      71     F      71      4   30  104     4    8   13   25   38   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     V      72     V      72      4   30  104     0    4    6   18   30   44   59   74   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D      73     D      73      9   30  104     3    4    9   14   28   48   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D      74     D      74      9   30  104     3    8   17   26   37   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     N      75     N      75      9   30  104     3    8   14   24   33   48   64   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      76     K      76     11   30  104     3    6   17   27   42   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     F      77     F      77     11   30  104     3   10   17   27   38   49   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     A      78     A      78     11   30  104     4   10   17   27   38   49   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      79     G      79     11   30  104     4   10   18   27   39   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      80     L      80     11   30  104     4    9   20   27   39   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      81     M      81     11   30  104     3    9   17   27   38   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      82     L      82     11   30  104     3   10   17   27   38   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     V      83     V      83     11   30  104     3   10   18   32   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     G      84     G      84     11   30  104     3   10   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T      85     T      85     11   30  104     3   10   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     I      86     I      86     11   30  104     5   10   15   25   38   48   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      87     E      87     11   30  104    12   21   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     I      88     I      88      5   30  104     8   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      89     L      89      5   30  104     5    9   14   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     H      90     H      90      5   27  104     5    5   10   25   41   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D      91     D      91      9   26  104     9   17   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     R      92     R      92      9   26  104     9   21   23   31   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     A      93     A      93      9   26  104    12   21   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     S      94     S      94      9   26  104    12   21   27   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     K      95     K      95      9   26  104    12   21   23   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E      96     E      96      9   26  104    12   21   23   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     M      97     M      97      9   26  104    12   21   23   33   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     L      98     L      98      9   26  104    10   21   23   29   43   56   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     W      99     W      99      9   26  104     8   21   23   29   37   49   67   75   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T     100     T     100      4   24  104     3    8   10   14   25   38   49   61   78   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     D     101     D     101      4    6  104     3    4    7   13   17   24   32   39   54   70   84   91   95  101  109  113  115  116  116  118 
LCS_GDT     G     102     G     102      4    6  104     3    4    8   13   16   23   26   32   34   38   47   53   59   69   79   93   98  102  108  110 
LCS_GDT     C     103     C     103      3    6  104     3    3    7   11   16   22   27   32   34   38   46   55   65   75   86   95   99  105  109  116 
LCS_GDT     E     104     E     104      3    6  104     0    3    5    6    6    7    9   11   13   15   19   24   28   53   56   68   74   83   97  105 
LCS_GDT     I     105     I     105      3    4  104     1    3    3    4    6    7    9   11   15   16   17   32   39   44   47   71   77   83   97  105 
LCS_GDT     Y     106     Y     106      3    4   94     0    3    3    5    6    8   11   24   27   34   39   41   75   83   95  102  105  116  116  118 
LCS_GDT     Y     107     Y     107      3    4   88     1    3    3    5   12   14   20   31   41   50   59   67   76   83   88   94  109  113  116  118 
LCS_GDT     P     108     P     108      3    4   23     0    3    3    5    7   13   16   19   32   41   53   62   68   76   83   89   93  100  111  117 
LCS_GDT     L     109     L     109      3    5   23     1    3    4    5   11   11   15   23   31   41   46   58   68   80   83   90   93  104  110  118 
LCS_GDT     G     110     G     110      3    5   21     3    4    6    7    9   11   14   19   22   33   42   58   68   72   80   90   97  104  110  115 
LCS_GDT     I     111     I     111      4    5   21     3    3    4    5    6    6   11   14   16   19   22   24   34   37   58   62   72   88   94  101 
LCS_GDT     D     112     D     112      4    5   21     3    4    6    7    9   11   14   19   22   28   36   42   51   59   70   90   92   96  101  114 
LCS_GDT     D     113     D     113      4    5   21     3    3    6    7   11   11   14   23   27   36   45   67   72   80   87   93  100  106  114  118 
LCS_GDT     P     114     P     114      4    8   21     0    3    4    5    6   10   14   26   29   44   54   62   68   80   83   90   96  106  114  118 
LCS_GDT     D     115     D     115      3    8   21     3    4    6    6   14   19   32   49   65   73   82   99  105  109  112  113  115  116  116  118 
LCS_GDT     Y     116     Y     116      3    8   21     3    4    6   12   15   18   34   50   74   90   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T     117     T     117      3    8   21     3    4    7   10   15   20   28   49   74   84   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     A     118     A     118      3    8   21     3    4    6    7   11   18   23   37   48   69   87  100  105  109  112  113  115  116  116  118 
LCS_GDT     L     119     L     119      4    8   21     3    4    6    8   12   20   25   33   49   69   81  100  105  109  112  113  115  116  116  118 
LCS_GDT     C     120     C     120      4    8   21     3    4    6   11   20   29   46   65   78   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     F     121     F     121      4    8   21     3    4    6   13   21   29   43   65   77   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     T     122     T     122      4    8   21     3    4    6   15   27   48   64   74   83   91   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     A     123     A     123      4    8   21     3    3    5   14   33   44   56   63   75   86   97  100  105  109  112  113  115  116  116  118 
LCS_GDT     E     124     E     124      4    8   21     3    3    6   15   21   26   42   54   69   83   92  100  105  109  112  113  115  116  116  118 
LCS_GDT     W     125     W     125      5    8   21     3    3    9   15   21   32   42   57   69   83   91  100  105  109  112  113  115  116  116  118 
LCS_GDT     G     126     G     126      5    8   21     5   21   23   28   34   44   53   62   69   79   86   96  105  109  112  113  115  116  116  118 
LCS_GDT     N     127     N     127      5    6   21     3   11   23   29   37   44   57   63   71   83   91  100  105  109  112  113  115  116  116  118 
LCS_GDT     Y     128     Y     128      5    6   20     3    4    6    7    8   12   14   27   53   63   73   83   91   99  105  113  115  116  116  118 
LCS_GDT     Y     129     Y     129      5    6   17     3    4    6    6    6   10   14   16   46   58   73   83   92   99  108  113  115  116  116  118 
LCS_GDT     R     130     R     130      4    5   17     4    4    6    7    8   10   14   19   23   32   40   53   57   74   79   88   99  107  112  115 
LCS_GDT     H     131     H     131      4    5   17     4    4    4    6    6    8   10   14   17   18   26   28   31   38   50   63   73   89   98  106 
LCS_GDT     L     132     L     132      4    5   17     4    4    4    5    6    7   10   13   17   21   26   28   31   36   38   58   66   79   93  106 
LCS_GDT     K     133     K     133      6    8   17     4    5    6    7    8   10   15   21   23   27   39   53   56   68   73   80   86   97  105  108 
LCS_GDT     N     134     N     134      6    8   17     3    4    6    7   10   16   19   21   25   33   43   55   65   71   76   83   91   99  105  109 
LCS_GDT     I     135     I     135      6    8   17     4    5    6    7    8   10   14   15   17   27   34   41   65   71   79   95   99  107  112  115 
LCS_GDT     T     136     T     136      6    8   17     4    5    6    7    8   10   14   21   23   27   34   55   65   71   81   95   99  107  112  115 
LCS_GDT     F     137     F     137      6    8   17     4    5    6    7    8   10   14   15   17   21   26   33   45   68   71   91   99  107  108  115 
LCS_GDT     K     138     K     138      6    8   17     4    5    6    7    8   10   14   15   17   21   26   28   40   68   71   73   98  107  108  115 
LCS_GDT     I     139     I     139      4    8   17     1    3    5    7   12   16   17   21   23   27   32   36   56   68   71   80   83   91  100  109 
LCS_GDT     D     140     D     140      3    8   17     0    3    3    6    9   16   19   21   23   27   32   36   54   68   73   80   83   92  100  108 
LCS_GDT     E     141     E     141      0    3   17     0    0    3    8   12   16   17   20   23   24   26   33   40   45   52   67   73   79   84   87 
LCS_GDT     I     142     I     142      0    3   17     0    0    3    3    3    6    6    8   10   11   13   33   33   37   42   48   58   63   73   79 
LCS_GDT     Y     143     Y     143      0    3   17     0    0    3    3    3    4    6    8   10   11   14   34   36   44   51   54   79   86   91   98 
LCS_AVERAGE  LCS_A:  24.53  (   4.83   10.74   58.01 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     21     27     33     43     56     67     75     83     91     97    100    105    109    112    113    115    116    116    118 
GDT PERCENT_CA   8.45  14.79  19.01  23.24  30.28  39.44  47.18  52.82  58.45  64.08  68.31  70.42  73.94  76.76  78.87  79.58  80.99  81.69  81.69  83.10
GDT RMS_LOCAL    0.34   6.93   1.01   1.29   1.74   2.18   2.47   2.68   2.91   3.24   3.47   3.65   3.84   4.05   4.20   4.31   4.49   4.58   4.58   4.80
GDT RMS_ALL_CA   9.03   8.90   9.69   9.74   9.57   9.32   9.21   9.17   9.14   9.13   9.09   8.89   8.89   8.88   8.84   8.85   8.75   8.75   8.75   8.72

#      Molecule1      Molecule2       DISTANCE
LGA    I       2      I       2          2.507
LGA    D       3      D       3          3.738
LGA    E       4      E       4          3.426
LGA    K       5      K       5          3.288
LGA    F       6      F       6          3.305
LGA    L       7      L       7          3.057
LGA    I       8      I       8          3.246
LGA    E       9      E       9          3.461
LGA    S      10      S      10          2.829
LGA    N      11      N      11          2.607
LGA    E      12      E      12          2.827
LGA    L      13      L      13          3.030
LGA    V      14      V      14          2.658
LGA    E      15      E      15          2.783
LGA    S      16      S      16          5.510
LGA    S      17      S      17          8.658
LGA    K      18      K      18         10.326
LGA    I      19      I      19          9.093
LGA    V      20      V      20          5.637
LGA    M      21      M      21          5.883
LGA    V      22      V      22          5.077
LGA    G      23      G      23          3.611
LGA    T      24      T      24          1.612
LGA    N      25      N      25          1.649
LGA    G      26      G      26          3.748
LGA    E      27      E      27          3.230
LGA    N      28      N      28          2.092
LGA    G      29      G      29          2.252
LGA    Y      30      Y      30          2.549
LGA    P      31      P      31          3.717
LGA    N      32      N      32          3.360
LGA    I      33      I      33          2.872
LGA    K      34      K      34          4.740
LGA    A      35      A      35          3.113
LGA    M      36      M      36          3.470
LGA    M      37      M      37          4.938
LGA    R      38      R      38          3.014
LGA    L      39      L      39          3.988
LGA    K      40      K      40          2.295
LGA    H      41      H      41          4.106
LGA    D      42      D      42          4.920
LGA    G      43      G      43          6.886
LGA    L      44      L      44          8.050
LGA    K      45      K      45          6.321
LGA    K      46      K      46          2.865
LGA    F      47      F      47          3.576
LGA    W      48      W      48          3.945
LGA    L      49      L      49          3.242
LGA    S      50      S      50          4.651
LGA    T      51      T      51          5.007
LGA    N      52      N      52          6.184
LGA    T      53      T      53          2.960
LGA    S      54      S      54          1.011
LGA    T      55      T      55          5.907
LGA    R      56      R      56          5.467
LGA    M      57      M      57          4.178
LGA    V      58      V      58          3.987
LGA    E      59      E      59          4.708
LGA    R      60      R      60          3.031
LGA    L      61      L      61          1.709
LGA    K      62      K      62          3.524
LGA    K      63      K      63          4.049
LGA    N      64      N      64          2.363
LGA    N      65      N      65          1.965
LGA    K      66      K      66          2.261
LGA    I      67      I      67          2.343
LGA    C      68      C      68          1.464
LGA    L      69      L      69          2.297
LGA    Y      70      Y      70          1.920
LGA    F      71      F      71          2.887
LGA    V      72      V      72          4.150
LGA    D      73      D      73          3.714
LGA    D      74      D      74          2.964
LGA    N      75      N      75          3.766
LGA    K      76      K      76          1.972
LGA    F      77      F      77          2.751
LGA    A      78      A      78          2.800
LGA    G      79      G      79          2.145
LGA    L      80      L      80          2.170
LGA    M      81      M      81          2.513
LGA    L      82      L      82          2.612
LGA    V      83      V      83          1.602
LGA    G      84      G      84          2.061
LGA    T      85      T      85          2.071
LGA    I      86      I      86          3.248
LGA    E      87      E      87          1.615
LGA    I      88      I      88          0.639
LGA    L      89      L      89          1.856
LGA    H      90      H      90          3.114
LGA    D      91      D      91          1.329
LGA    R      92      R      92          1.826
LGA    A      93      A      93          0.969
LGA    S      94      S      94          0.494
LGA    K      95      K      95          1.605
LGA    E      96      E      96          1.778
LGA    M      97      M      97          1.907
LGA    L      98      L      98          2.386
LGA    W      99      W      99          3.636
LGA    T     100      T     100          7.439
LGA    D     101      D     101         12.395
LGA    G     102      G     102         18.047
LGA    C     103      C     103         16.363
LGA    E     104      E     104         17.919
LGA    I     105      I     105         17.444
LGA    Y     106      Y     106         12.500
LGA    Y     107      Y     107         12.206
LGA    P     108      P     108         14.218
LGA    L     109      L     109         15.457
LGA    G     110      G     110         16.265
LGA    I     111      I     111         19.240
LGA    D     112      D     112         16.916
LGA    D     113      D     113         13.725
LGA    P     114      P     114         13.057
LGA    D     115      D     115          7.797
LGA    Y     116      Y     116          6.799
LGA    T     117      T     117          7.252
LGA    A     118      A     118          8.140
LGA    L     119      L     119          7.658
LGA    C     120      C     120          6.070
LGA    F     121      F     121          6.364
LGA    T     122      T     122          4.335
LGA    A     123      A     123          6.333
LGA    E     124      E     124          7.015
LGA    W     125      W     125          7.529
LGA    G     126      G     126          8.525
LGA    N     127      N     127          7.772
LGA    Y     128      Y     128         11.266
LGA    Y     129      Y     129         11.022
LGA    R     130      R     130         16.534
LGA    H     131      H     131         20.740
LGA    L     132      L     132         21.210
LGA    K     133      K     133         20.026
LGA    N     134      N     134         19.318
LGA    I     135      I     135         16.327
LGA    T     136      T     136         16.010
LGA    F     137      F     137         15.672
LGA    K     138      K     138         15.777
LGA    I     139      I     139         17.244
LGA    D     140      D     140         19.503
LGA    E     141      E     141         25.368
LGA    I     142      I     142         28.548
LGA    Y     143      Y     143         27.812

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  145  142    4.0     75    2.68    42.606    37.139     2.698

LGA_LOCAL      RMSD =  2.679  Number of atoms =   75  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  9.050  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  8.082  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.398898 * X  +  -0.342163 * Y  +  -0.850767 * Z  +  -8.997083
  Y_new =  -0.673542 * X  +  -0.738914 * Y  +  -0.018626 * Z  +  -7.872494
  Z_new =  -0.622271 * X  +   0.580457 * Y  +  -0.525213 * Z  +  12.483983 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.306271   -0.835322  [ DEG:   132.1396    -47.8604 ]
  Theta =   0.671640    2.469953  [ DEG:    38.4821    141.5179 ]
  Phi   =  -1.036103    2.105490  [ DEG:   -59.3643    120.6357 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0380TS168_2                                  
REMARK     2: T0380.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0380TS168_2.T0380.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  145  142   4.0   75   2.68  37.139     8.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0380TS168_2
PFRMAT TS
TARGET T0380
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -24.185   2.907   0.213  1.00 25.00           C
ATOM      2  CA  ILE     2     -25.896   2.348   3.520  1.00 25.00           C
ATOM      3  CA  ASP     3     -24.770   5.041   6.027  1.00 25.00           C
ATOM      4  CA  GLU     4     -21.624   5.356   3.865  1.00 25.00           C
ATOM      5  CA  LYS     5     -20.609   8.265   6.139  1.00 25.00           C
ATOM      6  CA  PHE     6     -19.786   5.806   8.957  1.00 25.00           C
ATOM      7  CA  LEU     7     -17.668   3.715   6.547  1.00 25.00           C
ATOM      8  CA  ILE     8     -15.809   6.863   5.409  1.00 25.00           C
ATOM      9  CA  GLU     9     -15.154   7.825   9.058  1.00 25.00           C
ATOM     10  CA  SER    10     -13.823   4.306   9.772  1.00 25.00           C
ATOM     11  CA  ASN    11     -11.522   4.530   6.719  1.00 25.00           C
ATOM     12  CA  GLU    12     -10.234   7.935   7.908  1.00 25.00           C
ATOM     13  CA  LEU    13      -9.563   6.492  11.392  1.00 25.00           C
ATOM     14  CA  VAL    14      -7.666   3.552   9.836  1.00 25.00           C
ATOM     15  CA  GLU    15      -5.577   5.980   7.736  1.00 25.00           C
ATOM     16  CA  SER    16      -6.488   4.126   4.489  1.00 25.00           C
ATOM     17  CA  SER    17      -8.522   0.961   4.810  1.00 25.00           C
ATOM     18  CA  LYS    18     -11.354  -0.637   6.889  1.00 25.00           C
ATOM     19  CA  ILE    19     -10.501  -2.110  10.327  1.00 25.00           C
ATOM     20  CA  VAL    20      -9.679  -4.538  13.061  1.00 25.00           C
ATOM     21  CA  MET    21      -9.072  -6.765  16.138  1.00 25.00           C
ATOM     22  CA  VAL    22      -8.325 -10.304  17.311  1.00 25.00           C
ATOM     23  CA  GLY    23      -7.022  -8.611  20.459  1.00 25.00           C
ATOM     24  CA  THR    24      -8.119 -11.551  22.504  1.00 25.00           C
ATOM     25  CA  ASN    25     -11.389 -11.914  24.377  1.00 25.00           C
ATOM     26  CA  GLY    26     -10.039 -15.303  25.546  1.00 25.00           C
ATOM     27  CA  GLU    27      -8.380 -17.189  28.425  1.00 25.00           C
ATOM     28  CA  ASN    28      -9.831 -17.264  32.003  1.00 25.00           C
ATOM     29  CA  GLY    29     -11.306 -13.880  32.949  1.00 25.00           C
ATOM     30  CA  TYR    30      -9.740 -12.179  29.926  1.00 25.00           C
ATOM     31  CA  PRO    31      -7.907  -9.073  28.783  1.00 25.00           C
ATOM     32  CA  ASN    32     -11.345  -7.726  27.802  1.00 25.00           C
ATOM     33  CA  ILE    33      -9.609  -6.845  24.552  1.00 25.00           C
ATOM     34  CA  LYS    34      -8.727  -3.659  22.634  1.00 25.00           C
ATOM     35  CA  ALA    35      -5.149  -3.820  21.219  1.00 25.00           C
ATOM     36  CA  MET    36      -5.268  -3.708  17.383  1.00 25.00           C
ATOM     37  CA  MET    37      -5.478  -1.738  14.124  1.00 25.00           C
ATOM     38  CA  ARG    38      -4.495  -0.261  10.716  1.00 25.00           C
ATOM     39  CA  LEU    39      -4.461  -2.741   7.832  1.00 25.00           C
ATOM     40  CA  LYS    40      -4.694  -2.351   4.048  1.00 25.00           C
ATOM     41  CA  HIS    41      -6.568  -2.682   0.788  1.00 25.00           C
ATOM     42  CA  ASP    42      -9.249  -2.113  -1.790  1.00 25.00           C
ATOM     43  CA  GLY    43      -9.950  -5.749  -2.597  1.00 25.00           C
ATOM     44  CA  LEU    44     -13.149  -7.113  -1.137  1.00 25.00           C
ATOM     45  CA  LYS    45     -10.724  -9.623   0.474  1.00 25.00           C
ATOM     46  CA  LYS    46     -11.423 -10.581   4.123  1.00 25.00           C
ATOM     47  CA  PHE    47     -11.164  -7.653   6.540  1.00 25.00           C
ATOM     48  CA  TRP    48      -7.993  -7.065   8.609  1.00 25.00           C
ATOM     49  CA  LEU    49      -5.723  -7.262  11.664  1.00 25.00           C
ATOM     50  CA  SER    50      -3.316  -8.081  14.455  1.00 25.00           C
ATOM     51  CA  THR    51      -1.886 -11.077  16.410  1.00 25.00           C
ATOM     52  CA  ASN    52       0.994 -13.552  16.366  1.00 25.00           C
ATOM     53  CA  THR    53       3.597 -15.348  18.489  1.00 25.00           C
ATOM     54  CA  SER    54       3.822 -14.556  22.255  1.00 25.00           C
ATOM     55  CA  THR    55       2.802 -11.494  24.282  1.00 25.00           C
ATOM     56  CA  ARG    56      -0.582 -10.742  25.808  1.00 25.00           C
ATOM     57  CA  MET    57      -3.016 -10.570  22.856  1.00 25.00           C
ATOM     58  CA  VAL    58      -1.051 -13.314  21.044  1.00 25.00           C
ATOM     59  CA  GLU    59      -1.151 -15.496  24.191  1.00 25.00           C
ATOM     60  CA  ARG    60      -4.932 -14.958  24.474  1.00 25.00           C
ATOM     61  CA  LEU    61      -5.371 -15.926  20.795  1.00 25.00           C
ATOM     62  CA  LYS    62      -3.289 -19.091  21.354  1.00 25.00           C
ATOM     63  CA  LYS    63      -5.424 -19.987  24.404  1.00 25.00           C
ATOM     64  CA  ASN    64      -8.574 -20.087  22.298  1.00 25.00           C
ATOM     65  CA  ASN    65      -9.684 -18.119  19.254  1.00 25.00           C
ATOM     66  CA  LYS    66     -11.239 -14.695  19.646  1.00 25.00           C
ATOM     67  CA  ILE    67     -13.722 -11.811  19.909  1.00 25.00           C
ATOM     68  CA  CYS    68     -13.149  -8.185  19.022  1.00 25.00           C
ATOM     69  CA  LEU    69     -12.969  -4.543  17.782  1.00 25.00           C
ATOM     70  CA  TYR    70     -10.674  -1.576  18.329  1.00 25.00           C
ATOM     71  CA  PHE    71     -12.070  -0.521  14.909  1.00 25.00           C
ATOM     72  CA  VAL    72      -9.773   2.556  14.723  1.00 25.00           C
ATOM     73  CA  ASP    73     -11.544   5.541  16.198  1.00 25.00           C
ATOM     74  CA  ASP    74     -10.710   8.710  18.185  1.00 25.00           C
ATOM     75  CA  ASN    75     -10.747  11.630  15.798  1.00 25.00           C
ATOM     76  CA  LYS    76     -14.355  12.557  15.119  1.00 25.00           C
ATOM     77  CA  PHE    77     -16.408   9.788  16.765  1.00 25.00           C
ATOM     78  CA  ALA    78     -16.367   6.953  14.180  1.00 25.00           C
ATOM     79  CA  GLY    79     -15.885   3.230  14.935  1.00 25.00           C
ATOM     80  CA  LEU    80     -16.959   0.033  13.169  1.00 25.00           C
ATOM     81  CA  MET    81     -16.350  -3.632  14.060  1.00 25.00           C
ATOM     82  CA  LEU    82     -14.455  -6.423  12.182  1.00 25.00           C
ATOM     83  CA  VAL    83     -15.444  -9.323  14.462  1.00 25.00           C
ATOM     84  CA  GLY    84     -13.552 -12.645  14.495  1.00 25.00           C
ATOM     85  CA  THR    85     -10.507 -14.917  14.326  1.00 25.00           C
ATOM     86  CA  ILE    86      -7.105 -15.043  16.023  1.00 25.00           C
ATOM     87  CA  GLU    87      -5.343 -17.104  13.397  1.00 25.00           C
ATOM     88  CA  ILE    88      -1.895 -16.709  11.952  1.00 25.00           C
ATOM     89  CA  LEU    89      -1.962 -15.923   8.182  1.00 25.00           C
ATOM     90  CA  HIS    90       0.670 -18.380   7.092  1.00 25.00           C
ATOM     91  CA  ASP    91       4.430 -18.099   6.624  1.00 25.00           C
ATOM     92  CA  ARG    92       6.713 -15.214   5.601  1.00 25.00           C
ATOM     93  CA  ALA    93       5.282 -15.564   2.065  1.00 25.00           C
ATOM     94  CA  SER    94       1.799 -14.633   3.356  1.00 25.00           C
ATOM     95  CA  LYS    95       3.251 -11.564   5.128  1.00 25.00           C
ATOM     96  CA  GLU    96       5.040 -10.519   1.908  1.00 25.00           C
ATOM     97  CA  MET    97       1.778 -10.908  -0.060  1.00 25.00           C
ATOM     98  CA  LEU    98      -0.069  -8.775   2.530  1.00 25.00           C
ATOM     99  CA  TRP    99       2.645  -6.085   2.284  1.00 25.00           C
ATOM    100  CA  THR   100       2.360  -6.110  -1.535  1.00 25.00           C
ATOM    101  CA  ASP   101      -1.444  -5.751  -1.277  1.00 25.00           C
ATOM    102  CA  GLY   102      -2.867  -9.124  -2.019  1.00 25.00           C
ATOM    103  CA  CYS   103      -4.826  -9.761   1.149  1.00 25.00           C
ATOM    104  CA  GLU   104      -5.069  -7.924   4.445  1.00 25.00           C
ATOM    105  CA  ILE   105      -3.160  -9.019   7.587  1.00 25.00           C
ATOM    106  CA  TYR   106      -1.544  -6.396   9.798  1.00 25.00           C
ATOM    107  CA  TYR   107      -0.892  -3.606  12.300  1.00 25.00           C
ATOM    108  CA  PRO   108       1.264  -0.967  13.863  1.00 25.00           C
ATOM    109  CA  LEU   109       4.180   0.973  15.221  1.00 25.00           C
ATOM    110  CA  GLY   110       6.296   3.316  17.338  1.00 25.00           C
ATOM    111  CA  ILE   111       5.060   1.786  20.590  1.00 25.00           C
ATOM    112  CA  ASP   112       6.641  -1.547  19.618  1.00 25.00           C
ATOM    113  CA  ASP   113       3.401  -3.168  18.659  1.00 25.00           C
ATOM    114  CA  PRO   114       1.176  -5.606  16.788  1.00 25.00           C
ATOM    115  CA  ASP   115       1.907  -8.421  14.279  1.00 25.00           C
ATOM    116  CA  TYR   116       0.229 -11.077  12.058  1.00 25.00           C
ATOM    117  CA  THR   117      -3.383 -11.953  11.256  1.00 25.00           C
ATOM    118  CA  ALA   118      -7.129 -12.222  11.841  1.00 25.00           C
ATOM    119  CA  LEU   119      -9.987  -9.819  12.391  1.00 25.00           C
ATOM    120  CA  CYS   120     -11.860 -11.824   9.769  1.00 25.00           C
ATOM    121  CA  PHE   121     -15.311 -10.339   9.181  1.00 25.00           C
ATOM    122  CA  THR   122     -15.961 -13.197   6.778  1.00 25.00           C
ATOM    123  CA  ALA   123     -19.266 -14.180   8.361  1.00 25.00           C
ATOM    124  CA  GLU   124     -22.333 -15.524   6.465  1.00 25.00           C
ATOM    125  CA  TRP   125     -24.249 -12.260   6.846  1.00 25.00           C
ATOM    126  CA  GLY   126     -23.750 -11.534  10.556  1.00 25.00           C
ATOM    127  CA  ASN   127     -23.894  -8.077  12.089  1.00 25.00           C
ATOM    128  CA  TYR   128     -20.437  -8.892  13.524  1.00 25.00           C
ATOM    129  CA  TYR   129     -20.959  -6.316  16.309  1.00 25.00           C
ATOM    130  CA  ARG   130     -24.378  -7.842  17.114  1.00 25.00           C
ATOM    131  CA  HIS   131     -23.341  -9.411  20.452  1.00 25.00           C
ATOM    132  CA  LEU   132     -21.957 -12.122  18.172  1.00 25.00           C
ATOM    133  CA  LYS   133     -25.271 -13.590  17.047  1.00 25.00           C
ATOM    134  CA  ASN   134     -24.043 -15.807  14.295  1.00 25.00           C
ATOM    135  CA  ILE   135     -20.783 -14.020  13.555  1.00 25.00           C
ATOM    136  CA  THR   136     -18.123 -16.530  12.651  1.00 25.00           C
ATOM    137  CA  PHE   137     -14.737 -15.958  10.876  1.00 25.00           C
ATOM    138  CA  LYS   138     -11.315 -16.930   9.622  1.00 25.00           C
ATOM    139  CA  ILE   139      -9.154 -19.725   8.369  1.00 25.00           C
ATOM    140  CA  ASP   140      -9.704 -23.270   6.976  1.00 25.00           C
ATOM    141  CA  GLU   141     -10.234 -26.638   5.257  1.00 25.00           C
ATOM    142  CA  ILE   142     -12.193 -29.679   3.953  1.00 25.00           C
ATOM    143  CA  TYR   143     -14.645 -31.465   1.730  1.00 25.00           C
ATOM    144  CA  ASN   144     -16.797 -31.431  -1.351  1.00 25.00           C
ATOM    145  CA  TYR   145     -19.146 -28.590  -2.105  1.00 25.00           C
TER
END
