
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  145 (  145),  selected  142 , name T0380TS168_3
# Molecule2: number of CA atoms  142 ( 1146),  selected  142 , name T0380.pdb
# PARAMETERS: T0380TS168_3.T0380.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   103         2 - 104         4.62    10.81
  LONGEST_CONTINUOUS_SEGMENT:   103         3 - 105         4.97    10.73
  LCS_AVERAGE:     56.69

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        59 - 82          1.95    11.39
  LCS_AVERAGE:      9.80

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13         4 - 16          0.51    13.86
  LCS_AVERAGE:      4.55

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     I       2     I       2      3    3  103     0    3    3    4   13   17   29   37   59   67   74   87   93   98  100  104  107  109  111  112 
LCS_GDT     D       3     D       3      3   15  103     3    7   13   18   39   50   59   68   80   91   96  100  101  105  106  108  109  112  113  113 
LCS_GDT     E       4     E       4     13   15  103     9   13   13   22   34   45   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K       5     K       5     13   15  103    10   13   13   22   34   45   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     F       6     F       6     13   15  103     6   13   13   22   34   47   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L       7     L       7     13   21  103    10   13   15   25   36   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I       8     I       8     13   21  103    10   13   15   25   35   51   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E       9     E       9     13   21  103    10   13   13   25   39   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      10     S      10     13   21  103    10   13   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      11     N      11     13   21  103    10   13   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      12     E      12     13   21  103    10   13   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      13     L      13     13   21  103    10   13   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      14     V      14     13   21  103    10   13   13   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      15     E      15     13   21  103    10   13   13   24   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      16     S      16     13   21  103     4   13   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      17     S      17      3   21  103     1    4   10   25   40   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      18     K      18      4   21  103     3    6    9   19   36   50   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I      19     I      19      4   21  103     3    5    8   16   28   44   60   71   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      20     V      20      4   21  103     3    6   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      21     M      21      4   21  103     3    5   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      22     V      22      6   21  103     4    4   12   25   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      23     G      23      6   21  103     3    7   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T      24     T      24      6   21  103     4   12   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      25     N      25      6   21  103     4    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      26     G      26      6   21  103     4    8   17   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      27     E      27      6   21  103     4    8   14   32   42   52   62   71   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      28     N      28      4   13  103     3    6   12   21   33   42   59   71   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      29     G      29      6   12  103     3    6    9   14   22   27   38   51   65   85   93   99  102  105  106  108  109  112  113  113 
LCS_GDT     Y      30     Y      30      6   12  103     3    6    9   14   29   37   51   71   83   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     P      31     P      31      6   12  103     3    6    9   14   29   42   57   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      32     N      32      6   12  103     4    6    9   14   29   42   57   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I      33     I      33      6   12  103     4    6   12   22   34   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      34     K      34      6   12  103     4    8   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     A      35     A      35      5   12  103     3    8   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      36     M      36      3   12  103     3    7   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      37     M      37      3   12  103     3    3   11   20   33   49   60   71   85   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     R      38     R      38      3   12  103     3    6   13   22   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      39     L      39      4   12  103     3    4    4   14   25   37   57   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      40     K      40      4   12  103     4    7   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     H      41     H      41      4    6  103     3    6   10   18   32   44   59   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D      42     D      42      4    6  103     3    4    4   16   25   35   53   64   74   91   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      43     G      43      6    7  103     3    4    6    7    9   17   19   45   70   81   88   98  102  105  106  108  109  112  113  113 
LCS_GDT     L      44     L      44      6    7  103     3    4    6    7    9   17   24   38   62   72   88   97  102  105  106  108  109  112  113  113 
LCS_GDT     K      45     K      45      6    8  103     3    6   12   22   33   49   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      46     K      46      6    8  103     3    7   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     F      47     F      47      6    8  103     3    3   13   25   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     W      48     W      48      6    8  103     3    4    6    9   25   45   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      49     L      49      4    8  103     3    4   10   20   39   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      50     S      50      4    8  103     1    5   15   28   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T      51     T      51      4    8  103     3    8   15   28   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      52     N      52      4    8  103     3    7   11   20   33   45   59   69   84   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T      53     T      53      4    8  103     3    7   13   29   40   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      54     S      54      4   13  103     3    7   12   20   33   51   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T      55     T      55     11   13  103     5   12   14   16   19   22   29   32   46   69   88   95  101  105  106  108  109  112  113  113 
LCS_GDT     R      56     R      56     11   13  103     9   12   15   16   19   29   42   58   76   86   95  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      57     M      57     11   13  103     9   12   15   16   24   39   57   70   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      58     V      58     11   14  103     9   12   15   16   25   39   56   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      59     E      59     11   24  103     9   12   15   16   25   36   51   67   81   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     R      60     R      60     11   24  103     9   12   15   19   31   47   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      61     L      61     11   24  103     9   12   15   20   34   51   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      62     K      62     11   24  103     9   12   15   19   26   39   54   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      63     K      63     11   24  103     9   12   15   19   26   37   53   70   82   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      64     N      64     11   24  103     9   12   15   19   30   45   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      65     N      65     11   24  103     9   12   15   16   31   49   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      66     K      66      6   24  103     3    5   10   19   26   39   57   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I      67     I      67      6   24  103     3    5    9   19   29   39   56   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     C      68     C      68      6   24  103     6    8   13   19   29   39   56   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      69     L      69      6   24  103     3    6   13   19   33   50   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     Y      70     Y      70      6   24  103     3    5    8   17   30   41   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     F      71     F      71      6   24  103     3    8   14   26   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      72     V      72      5   24  103     3    5    9   25   39   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D      73     D      73      6   24  103     3    8   17   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D      74     D      74      9   24  103     3    8   12   20   31   43   60   70   84   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     N      75     N      75      9   24  103     3    8   13   20   31   42   58   70   78   90   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      76     K      76      9   24  103     3    8   14   21   37   50   61   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     F      77     F      77      9   24  103     3    8   14   24   37   50   61   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     A      78     A      78      9   24  103     4    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      79     G      79      9   24  103     4    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      80     L      80      9   24  103     4    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      81     M      81      9   24  103     4    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      82     L      82      9   24  103     3    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     V      83     V      83      4   16  103     3    3    6   14   25   36   46   64   76   91   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     G      84     G      84      4   16  103     3    4   11   19   30   43   60   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T      85     T      85      4   12  103     3    4   11   20   31   51   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I      86     I      86      4   15  103     3    8   15   19   38   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      87     E      87      4   15  103     3    5   15   19   37   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I      88     I      88      6   15  103     3    5   12   21   40   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      89     L      89      6   15  103     3    5   15   30   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     H      90     H      90      6   15  103     3    5   13   25   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D      91     D      91      9   15  103     3    6   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     R      92     R      92      9   15  103     8    8   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     A      93     A      93      9   15  103     8    8   18   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     S      94     S      94      9   15  103     8    8   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     K      95     K      95      9   15  103     8    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E      96     E      96      9   15  103     8    8   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     M      97     M      97      9   15  103     8    8   11   25   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     L      98     L      98      9   15  103     8    8   11   21   41   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     W      99     W      99      9   15  103     8    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T     100     T     100      4   15  103     3    8   13   26   38   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D     101     D     101      4    6  103     3    4    4    6    9   27   37   52   65   77   88   95   99  101  106  108  109  111  113  113 
LCS_GDT     G     102     G     102      4    6  103     3    4    4    5   11   19   25   30   40   49   60   71   82   90   96  101  106  109  112  113 
LCS_GDT     C     103     C     103      3    6  103     3    3    3    5    7   15   22   29   34   42   49   62   69   85   90   96  104  106  109  112 
LCS_GDT     E     104     E     104      3    6  103     3    3    3    4    5    7    8   10   14   16   20   27   30   38   50   56   69   77   85   93 
LCS_GDT     I     105     I     105      3    5  103     3    3    3    4    4    7    9   13   19   23   27   30   34   37   38   45   45   51   56   66 
LCS_GDT     Y     106     Y     106      3    8   22     3    3    4    8   11   12   15   19   21   23   27   30   34   37   38   45   47   51   56   69 
LCS_GDT     Y     107     Y     107      3   10   22     0    3    6    8   11   13   15   19   21   23   27   30   34   37   38   45   47   51   56   61 
LCS_GDT     P     108     P     108      6   10   22     3    4    7    7    8   12   15   19   21   22   26   30   34   37   38   41   43   49   51   58 
LCS_GDT     L     109     L     109      6   10   22     3    5    7    9   11   13   15   19   21   23   27   30   34   37   38   45   45   51   55   61 
LCS_GDT     G     110     G     110      6   10   22     3    5    7    7   11   13   15   19   21   22   26   30   34   37   38   41   43   49   55   61 
LCS_GDT     I     111     I     111      6   10   22     3    5    7    7    8   10   14   16   20   22   25   30   34   37   38   45   47   51   55   61 
LCS_GDT     D     112     D     112      6   10   22     3    5    7    7    8   11   14   16   21   23   27   30   34   37   38   45   47   51   56   63 
LCS_GDT     D     113     D     113      6   10   22     3    4    7    7   11   13   15   19   21   23   27   30   34   37   38   45   47   51   55   61 
LCS_GDT     P     114     P     114      3   10   22     3    3    5    7   11   13   15   19   21   23   27   30   34   38   43   49   52   57   64   69 
LCS_GDT     D     115     D     115      5   10   22     3    5    7    9   11   12   15   19   21   23   27   30   34   39   45   49   52   57   64   68 
LCS_GDT     Y     116     Y     116      5   10   22     3    5    7    9   11   13   15   19   21   23   27   30   34   37   38   46   51   54   60   65 
LCS_GDT     T     117     T     117      5    8   22     3    5    7    9   11   13   15   19   21   23   27   30   34   43   51   56   59   66   77   89 
LCS_GDT     A     118     A     118      5    8   22     3    5    7    9   11   13   15   19   21   23   27   30   34   37   38   45   54   65   72   81 
LCS_GDT     L     119     L     119      5    8   22     3    5    5    9   11   13   15   19   21   22   27   30   34   37   38   55   60   67   79   97 
LCS_GDT     C     120     C     120      5    8   22     3    5    7    9   11   13   15   19   21   22   27   30   34   37   38   45   47   53   57   75 
LCS_GDT     F     121     F     121      5    8   22     3    5    7    9   11   13   15   19   21   22   26   29   34   37   38   45   54   59   68   77 
LCS_GDT     T     122     T     122      5    8   22     3    4    5    6   11   13   15   19   21   22   26   30   34   37   38   45   47   51   55   63 
LCS_GDT     A     123     A     123      5    6   22     3    4    5    6    7   11   14   17   20   23   27   30   34   38   43   48   54   73   80   85 
LCS_GDT     E     124     E     124      5    6   21     3    4    5    6    7    9   10   16   20   22   29   32   35   38   53   57   69   73   80   85 
LCS_GDT     W     125     W     125      5    6   20     3    4    5    6    7    9   19   21   28   35   36   39   47   53   69   80   84   87   90   99 
LCS_GDT     G     126     G     126      5    6   11     2    4    5    6   10   13   19   31   33   46   57   62   81   87   95   99  104  106  111  112 
LCS_GDT     N     127     N     127      3    4   15     3    3   10   12   15   27   33   49   61   67   82   86   94   98  103  106  109  110  112  113 
LCS_GDT     Y     128     Y     128      3    5   16     3    4    5    8   10   15   23   27   61   67   80   90   97  102  105  108  109  112  113  113 
LCS_GDT     Y     129     Y     129      4    6   16     3    3    4    4    9   16   25   34   46   56   69   81   93  100  105  108  109  112  113  113 
LCS_GDT     R     130     R     130      5    6   16     3    5    5    7    9   13   20   28   35   49   60   75   88   96  102  107  109  112  113  113 
LCS_GDT     H     131     H     131      5    6   16     3    5    5    7    7   10   13   19   26   33   40   44   56   67   77   93   99  104  108  111 
LCS_GDT     L     132     L     132      5    6   16     3    5    5    7    7   10   13   14   17   33   40   44   68   75   88   93   99  104  108  111 
LCS_GDT     K     133     K     133      5    7   16     3    5    5   12   14   17   21   30   44   56   70   81   88   96  102  107  109  112  113  113 
LCS_GDT     N     134     N     134      5    7   16     3    5    5   12   19   29   46   61   70   86   94   99  102  105  106  108  109  112  113  113 
LCS_GDT     I     135     I     135      4    7   16     3    4    6   11   19   35   46   63   82   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     T     136     T     136      4    7   16     3    4    8   11   21   35   49   63   82   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     F     137     F     137      4    7   16     3    4    4    5    6   10   16   42   56   70   83   99  102  105  106  108  109  112  113  113 
LCS_GDT     K     138     K     138      4    7   16     3    4    4    8   17   27   51   66   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I     139     I     139      4    7   16     3    6   17   25   40   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     D     140     D     140      0    6   16     3    9   19   32   42   52   62   72   86   92   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     E     141     E     141      3    3   16     0    3    4   12   24   36   49   66   76   90   96  100  102  105  106  108  109  112  113  113 
LCS_GDT     I     142     I     142      3    3   16     0    3    4    5    9   13   15   16   21   23   45   54   79  100  103  106  109  112  113  113 
LCS_GDT     Y     143     Y     143      3    3   16     0    3    3    3    3    4    9   13   21   30   41   67   88   93  105  108  109  112  113  113 
LCS_AVERAGE  LCS_A:  23.68  (   4.55    9.80   56.69 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     19     32     42     52     62     72     86     92     96    100    102    105    106    108    109    112    113    113 
GDT PERCENT_CA   7.04   9.15  13.38  22.54  29.58  36.62  43.66  50.70  60.56  64.79  67.61  70.42  71.83  73.94  74.65  76.06  76.76  78.87  79.58  79.58
GDT RMS_LOCAL    0.31   0.51   1.25   1.54   1.79   2.07   2.44   2.84   3.12   3.30   3.45   3.60   3.74   3.86   3.92   4.04   4.12   4.47   4.51   4.51
GDT RMS_ALL_CA  14.19  13.86  10.88  10.87  10.85  10.80  10.78  10.83  10.91  10.92  10.97  11.02  11.07  11.10  11.11  11.07  11.08  11.17  11.13  11.13

#      Molecule1      Molecule2       DISTANCE
LGA    I       2      I       2         11.161
LGA    D       3      D       3          6.169
LGA    E       4      E       4          3.716
LGA    K       5      K       5          3.893
LGA    F       6      F       6          3.129
LGA    L       7      L       7          2.649
LGA    I       8      I       8          3.349
LGA    E       9      E       9          2.924
LGA    S      10      S      10          1.688
LGA    N      11      N      11          2.067
LGA    E      12      E      12          2.117
LGA    L      13      L      13          1.921
LGA    V      14      V      14          2.394
LGA    E      15      E      15          2.708
LGA    S      16      S      16          2.123
LGA    S      17      S      17          2.780
LGA    K      18      K      18          3.337
LGA    I      19      I      19          4.281
LGA    V      20      V      20          2.542
LGA    M      21      M      21          2.520
LGA    V      22      V      22          2.930
LGA    G      23      G      23          3.390
LGA    T      24      T      24          2.415
LGA    N      25      N      25          4.342
LGA    G      26      G      26          4.723
LGA    E      27      E      27          5.866
LGA    N      28      N      28          5.596
LGA    G      29      G      29          7.096
LGA    Y      30      Y      30          5.228
LGA    P      31      P      31          3.984
LGA    N      32      N      32          3.945
LGA    I      33      I      33          2.425
LGA    K      34      K      34          1.395
LGA    A      35      A      35          1.397
LGA    M      36      M      36          3.678
LGA    M      37      M      37          4.483
LGA    R      38      R      38          2.911
LGA    L      39      L      39          4.487
LGA    K      40      K      40          1.857
LGA    H      41      H      41          4.924
LGA    D      42      D      42          7.227
LGA    G      43      G      43          8.423
LGA    L      44      L      44          8.704
LGA    K      45      K      45          5.065
LGA    K      46      K      46          2.462
LGA    F      47      F      47          2.764
LGA    W      48      W      48          3.917
LGA    L      49      L      49          3.737
LGA    S      50      S      50          3.271
LGA    T      51      T      51          3.819
LGA    N      52      N      52          4.687
LGA    T      53      T      53          1.365
LGA    S      54      S      54          1.733
LGA    T      55      T      55          7.961
LGA    R      56      R      56          6.229
LGA    M      57      M      57          4.472
LGA    V      58      V      58          4.136
LGA    E      59      E      59          5.081
LGA    R      60      R      60          3.035
LGA    L      61      L      61          1.627
LGA    K      62      K      62          3.885
LGA    K      63      K      63          4.558
LGA    N      64      N      64          2.859
LGA    N      65      N      65          2.396
LGA    K      66      K      66          3.884
LGA    I      67      I      67          4.013
LGA    C      68      C      68          3.855
LGA    L      69      L      69          3.210
LGA    Y      70      Y      70          4.292
LGA    F      71      F      71          2.877
LGA    V      72      V      72          2.517
LGA    D      73      D      73          1.921
LGA    D      74      D      74          4.480
LGA    N      75      N      75          5.564
LGA    K      76      K      76          3.781
LGA    F      77      F      77          3.846
LGA    A      78      A      78          2.494
LGA    G      79      G      79          2.468
LGA    L      80      L      80          2.734
LGA    M      81      M      81          3.235
LGA    L      82      L      82          2.193
LGA    V      83      V      83          6.626
LGA    G      84      G      84          4.003
LGA    T      85      T      85          3.274
LGA    I      86      I      86          1.648
LGA    E      87      E      87          1.812
LGA    I      88      I      88          3.174
LGA    L      89      L      89          2.958
LGA    H      90      H      90          3.105
LGA    D      91      D      91          2.056
LGA    R      92      R      92          1.864
LGA    A      93      A      93          1.544
LGA    S      94      S      94          1.884
LGA    K      95      K      95          2.186
LGA    E      96      E      96          2.238
LGA    M      97      M      97          3.165
LGA    L      98      L      98          3.786
LGA    W      99      W      99          3.326
LGA    T     100      T     100          2.762
LGA    D     101      D     101          6.901
LGA    G     102      G     102         11.640
LGA    C     103      C     103         12.999
LGA    E     104      E     104         18.123
LGA    I     105      I     105         21.609
LGA    Y     106      Y     106         23.304
LGA    Y     107      Y     107         26.656
LGA    P     108      P     108         33.741
LGA    L     109      L     109         35.444
LGA    G     110      G     110         35.831
LGA    I     111      I     111         33.203
LGA    D     112      D     112         31.385
LGA    D     113      D     113         28.686
LGA    P     114      P     114         23.731
LGA    D     115      D     115         24.035
LGA    Y     116      Y     116         22.174
LGA    T     117      T     117         17.039
LGA    A     118      A     118         16.868
LGA    L     119      L     119         14.362
LGA    C     120      C     120         16.382
LGA    F     121      F     121         15.265
LGA    T     122      T     122         19.886
LGA    A     123      A     123         18.015
LGA    E     124      E     124         19.868
LGA    W     125      W     125         15.770
LGA    G     126      G     126         10.604
LGA    N     127      N     127          8.373
LGA    Y     128      Y     128          7.828
LGA    Y     129      Y     129          9.539
LGA    R     130      R     130         12.196
LGA    H     131      H     131         16.992
LGA    L     132      L     132         17.327
LGA    K     133      K     133         13.586
LGA    N     134      N     134          8.043
LGA    I     135      I     135          6.202
LGA    T     136      T     136          6.114
LGA    F     137      F     137          7.446
LGA    K     138      K     138          5.191
LGA    I     139      I     139          3.233
LGA    D     140      D     140          3.912
LGA    E     141      E     141          8.253
LGA    I     142      I     142         11.846
LGA    Y     143      Y     143          9.859

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  145  142    4.0     72    2.84    39.613    35.181     2.449

LGA_LOCAL      RMSD =  2.841  Number of atoms =   72  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.831  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 10.320  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.366336 * X  +  -0.180521 * Y  +  -0.912803 * Z  + -10.629381
  Y_new =   0.687096 * X  +   0.714000 * Y  +   0.134548 * Z  +  -6.375850
  Z_new =   0.627453 * X  +  -0.676473 * Y  +   0.385599 * Z  +  12.763544 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.052717    2.088875  [ DEG:   -60.3163    119.6837 ]
  Theta =  -0.678278   -2.463315  [ DEG:   -38.8625   -141.1375 ]
  Phi   =   1.080969   -2.060623  [ DEG:    61.9350   -118.0650 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0380TS168_3                                  
REMARK     2: T0380.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0380TS168_3.T0380.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  145  142   4.0   72   2.84  35.181    10.32
REMARK  ---------------------------------------------------------- 
MOLECULE T0380TS168_3
PFRMAT TS
TARGET T0380
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1     -18.363   7.579  -2.461  1.00 25.00           C
ATOM      2  CA  ILE     2     -19.983   8.142   0.956  1.00 25.00           C
ATOM      3  CA  ASP     3     -23.366   9.259   2.352  1.00 25.00           C
ATOM      4  CA  GLU     4     -23.280   6.029   4.411  1.00 25.00           C
ATOM      5  CA  LYS     5     -22.019   8.496   7.055  1.00 25.00           C
ATOM      6  CA  PHE     6     -20.652   5.593   9.146  1.00 25.00           C
ATOM      7  CA  LEU     7     -18.878   4.174   6.062  1.00 25.00           C
ATOM      8  CA  ILE     8     -17.353   7.610   5.328  1.00 25.00           C
ATOM      9  CA  GLU     9     -16.146   7.875   8.954  1.00 25.00           C
ATOM     10  CA  SER    10     -14.582   4.388   8.714  1.00 25.00           C
ATOM     11  CA  ASN    11     -12.822   5.373   5.459  1.00 25.00           C
ATOM     12  CA  GLU    12     -11.489   8.558   7.115  1.00 25.00           C
ATOM     13  CA  LEU    13     -10.203   6.506  10.082  1.00 25.00           C
ATOM     14  CA  VAL    14      -8.474   4.073   7.681  1.00 25.00           C
ATOM     15  CA  GLU    15      -6.852   7.010   5.835  1.00 25.00           C
ATOM     16  CA  SER    16      -4.865   7.830   8.959  1.00 25.00           C
ATOM     17  CA  SER    17      -5.886   7.370  12.584  1.00 25.00           C
ATOM     18  CA  LYS    18      -5.145   3.747  11.856  1.00 25.00           C
ATOM     19  CA  ILE    19      -7.206   0.845  13.164  1.00 25.00           C
ATOM     20  CA  VAL    20      -8.321  -0.626  16.550  1.00 25.00           C
ATOM     21  CA  MET    21      -8.632  -3.937  18.458  1.00 25.00           C
ATOM     22  CA  VAL    22      -9.890  -6.581  20.829  1.00 25.00           C
ATOM     23  CA  GLY    23     -13.365  -8.080  21.303  1.00 25.00           C
ATOM     24  CA  THR    24     -11.662 -11.448  21.711  1.00 25.00           C
ATOM     25  CA  ASN    25     -13.998 -14.358  22.557  1.00 25.00           C
ATOM     26  CA  GLY    26     -11.452 -15.058  25.206  1.00 25.00           C
ATOM     27  CA  GLU    27     -11.250 -18.054  27.460  1.00 25.00           C
ATOM     28  CA  ASN    28     -10.082 -20.360  30.229  1.00 25.00           C
ATOM     29  CA  GLY    29      -6.859 -18.373  30.572  1.00 25.00           C
ATOM     30  CA  TYR    30      -8.336 -14.893  30.053  1.00 25.00           C
ATOM     31  CA  PRO    31      -8.444 -11.846  27.807  1.00 25.00           C
ATOM     32  CA  ASN    32      -5.179 -10.427  26.468  1.00 25.00           C
ATOM     33  CA  ILE    33      -6.780  -7.213  25.324  1.00 25.00           C
ATOM     34  CA  LYS    34      -5.417  -4.948  22.613  1.00 25.00           C
ATOM     35  CA  ALA    35      -3.744  -3.276  19.670  1.00 25.00           C
ATOM     36  CA  MET    36      -4.372  -6.366  17.480  1.00 25.00           C
ATOM     37  CA  MET    37      -4.758  -3.669  14.747  1.00 25.00           C
ATOM     38  CA  ARG    38      -2.116  -1.733  12.735  1.00 25.00           C
ATOM     39  CA  LEU    39      -3.386  -1.047   9.185  1.00 25.00           C
ATOM     40  CA  LYS    40      -4.195  -2.975   6.034  1.00 25.00           C
ATOM     41  CA  HIS    41      -4.035  -1.098   2.721  1.00 25.00           C
ATOM     42  CA  ASP    42      -4.837  -1.207  -1.020  1.00 25.00           C
ATOM     43  CA  GLY    43      -5.800  -4.880  -1.135  1.00 25.00           C
ATOM     44  CA  LEU    44      -9.456  -3.707  -1.008  1.00 25.00           C
ATOM     45  CA  LYS    45     -10.986  -5.961   1.667  1.00 25.00           C
ATOM     46  CA  LYS    46     -10.575  -5.942   5.446  1.00 25.00           C
ATOM     47  CA  PHE    47      -8.907  -4.544   8.507  1.00 25.00           C
ATOM     48  CA  TRP    48      -5.684  -5.434  10.243  1.00 25.00           C
ATOM     49  CA  LEU    49      -5.612  -8.159  12.899  1.00 25.00           C
ATOM     50  CA  SER    50      -1.980  -8.695  11.895  1.00 25.00           C
ATOM     51  CA  THR    51      -1.038 -10.068  15.263  1.00 25.00           C
ATOM     52  CA  ASN    52       2.442 -11.700  15.145  1.00 25.00           C
ATOM     53  CA  THR    53       4.338 -13.616  17.866  1.00 25.00           C
ATOM     54  CA  SER    54       5.141 -12.427  21.436  1.00 25.00           C
ATOM     55  CA  THR    55       2.963  -9.382  21.927  1.00 25.00           C
ATOM     56  CA  ARG    56      -0.269 -10.069  23.924  1.00 25.00           C
ATOM     57  CA  MET    57      -2.721 -10.427  21.003  1.00 25.00           C
ATOM     58  CA  VAL    58      -0.481 -13.098  19.418  1.00 25.00           C
ATOM     59  CA  GLU    59      -0.331 -14.984  22.747  1.00 25.00           C
ATOM     60  CA  ARG    60      -4.146 -14.828  23.036  1.00 25.00           C
ATOM     61  CA  LEU    61      -4.496 -16.168  19.465  1.00 25.00           C
ATOM     62  CA  LYS    62      -2.083 -19.029  20.275  1.00 25.00           C
ATOM     63  CA  LYS    63      -4.095 -19.867  23.424  1.00 25.00           C
ATOM     64  CA  ASN    64      -7.724 -19.005  22.528  1.00 25.00           C
ATOM     65  CA  ASN    65      -9.026 -18.590  19.038  1.00 25.00           C
ATOM     66  CA  LYS    66      -9.295 -14.762  18.774  1.00 25.00           C
ATOM     67  CA  ILE    67      -8.087 -11.271  17.869  1.00 25.00           C
ATOM     68  CA  CYS    68      -9.639  -8.276  16.110  1.00 25.00           C
ATOM     69  CA  LEU    69      -9.947  -5.665  13.441  1.00 25.00           C
ATOM     70  CA  TYR    70     -11.314  -2.161  13.010  1.00 25.00           C
ATOM     71  CA  PHE    71     -12.199   1.547  12.634  1.00 25.00           C
ATOM     72  CA  VAL    72     -10.677   3.953  15.183  1.00 25.00           C
ATOM     73  CA  ASP    73     -11.157   7.783  15.115  1.00 25.00           C
ATOM     74  CA  ASP    74     -10.403  11.493  15.570  1.00 25.00           C
ATOM     75  CA  ASN    75     -10.873  13.833  12.605  1.00 25.00           C
ATOM     76  CA  LYS    76     -14.646  13.637  12.787  1.00 25.00           C
ATOM     77  CA  PHE    77     -16.453  11.671  15.516  1.00 25.00           C
ATOM     78  CA  ALA    78     -17.025   8.236  14.023  1.00 25.00           C
ATOM     79  CA  GLY    79     -16.564   4.443  14.050  1.00 25.00           C
ATOM     80  CA  LEU    80     -17.314   1.347  11.884  1.00 25.00           C
ATOM     81  CA  MET    81     -17.883  -2.265  13.051  1.00 25.00           C
ATOM     82  CA  LEU    82     -15.848  -5.125  11.559  1.00 25.00           C
ATOM     83  CA  VAL    83     -14.043  -7.462   9.100  1.00 25.00           C
ATOM     84  CA  GLY    84     -12.306  -9.803  11.543  1.00 25.00           C
ATOM     85  CA  THR    85     -10.113 -12.884  12.019  1.00 25.00           C
ATOM     86  CA  ILE    86      -8.311 -15.631  13.879  1.00 25.00           C
ATOM     87  CA  GLU    87      -4.845 -16.976  13.301  1.00 25.00           C
ATOM     88  CA  ILE    88      -3.805 -13.904  11.338  1.00 25.00           C
ATOM     89  CA  LEU    89      -2.990 -15.456   7.999  1.00 25.00           C
ATOM     90  CA  HIS    90      -0.252 -17.555   9.695  1.00 25.00           C
ATOM     91  CA  ASP    91       2.632 -19.005   7.618  1.00 25.00           C
ATOM     92  CA  ARG    92       5.207 -18.006   5.002  1.00 25.00           C
ATOM     93  CA  ALA    93       3.760 -15.773   2.247  1.00 25.00           C
ATOM     94  CA  SER    94       1.051 -14.525   4.648  1.00 25.00           C
ATOM     95  CA  LYS    95       3.713 -13.757   7.293  1.00 25.00           C
ATOM     96  CA  GLU    96       5.772 -11.837   4.696  1.00 25.00           C
ATOM     97  CA  MET    97       2.669  -9.837   3.677  1.00 25.00           C
ATOM     98  CA  LEU    98       1.962  -9.016   7.350  1.00 25.00           C
ATOM     99  CA  TRP    99       5.585  -7.866   7.817  1.00 25.00           C
ATOM    100  CA  THR   100       5.308  -5.652   4.704  1.00 25.00           C
ATOM    101  CA  ASP   101       2.056  -4.136   6.043  1.00 25.00           C
ATOM    102  CA  GLY   102      -0.604  -5.727   3.788  1.00 25.00           C
ATOM    103  CA  CYS   103      -3.294  -8.312   4.561  1.00 25.00           C
ATOM    104  CA  GLU   104      -4.703 -10.719   7.106  1.00 25.00           C
ATOM    105  CA  ILE   105      -8.067  -9.506   8.543  1.00 25.00           C
ATOM    106  CA  TYR   106     -10.738 -11.780   7.091  1.00 25.00           C
ATOM    107  CA  TYR   107     -14.010 -13.457   8.084  1.00 25.00           C
ATOM    108  CA  PRO   108     -16.726 -15.721   6.549  1.00 25.00           C
ATOM    109  CA  LEU   109     -17.831 -19.023   4.999  1.00 25.00           C
ATOM    110  CA  GLY   110     -21.188 -19.154   6.746  1.00 25.00           C
ATOM    111  CA  ILE   111     -21.038 -21.352   9.830  1.00 25.00           C
ATOM    112  CA  ASP   112     -17.642 -23.000   9.475  1.00 25.00           C
ATOM    113  CA  ASP   113     -14.878 -20.504  10.133  1.00 25.00           C
ATOM    114  CA  PRO   114     -11.984 -18.215  11.093  1.00 25.00           C
ATOM    115  CA  ASP   115     -14.269 -17.343  13.970  1.00 25.00           C
ATOM    116  CA  TYR   116     -15.057 -13.618  13.388  1.00 25.00           C
ATOM    117  CA  THR   117     -13.301 -11.692  16.140  1.00 25.00           C
ATOM    118  CA  ALA   118     -14.816  -8.188  15.709  1.00 25.00           C
ATOM    119  CA  LEU   119     -13.649  -4.792  17.083  1.00 25.00           C
ATOM    120  CA  CYS   120     -13.201  -2.788  20.245  1.00 25.00           C
ATOM    121  CA  PHE   121     -10.485  -0.416  21.540  1.00 25.00           C
ATOM    122  CA  THR   122     -11.903  -0.207  25.028  1.00 25.00           C
ATOM    123  CA  ALA   123     -15.469  -1.141  25.894  1.00 25.00           C
ATOM    124  CA  GLU   124     -18.220  -2.254  28.299  1.00 25.00           C
ATOM    125  CA  TRP   125     -20.530  -5.069  27.093  1.00 25.00           C
ATOM    126  CA  GLY   126     -19.917  -5.848  23.393  1.00 25.00           C
ATOM    127  CA  ASN   127     -20.339  -2.085  22.988  1.00 25.00           C
ATOM    128  CA  TYR   128     -18.027  -1.462  20.000  1.00 25.00           C
ATOM    129  CA  TYR   129     -19.392  -4.588  18.259  1.00 25.00           C
ATOM    130  CA  ARG   130     -22.979  -3.399  18.883  1.00 25.00           C
ATOM    131  CA  HIS   131     -24.933  -5.393  21.490  1.00 25.00           C
ATOM    132  CA  LEU   132     -25.079  -8.408  19.082  1.00 25.00           C
ATOM    133  CA  LYS   133     -28.421  -6.990  17.890  1.00 25.00           C
ATOM    134  CA  ASN   134     -27.701  -4.134  15.453  1.00 25.00           C
ATOM    135  CA  ILE   135     -24.674  -4.588  13.196  1.00 25.00           C
ATOM    136  CA  THR   136     -22.359  -7.364  12.012  1.00 25.00           C
ATOM    137  CA  PHE   137     -19.264  -8.911  10.507  1.00 25.00           C
ATOM    138  CA  LYS   138     -18.913  -6.582   7.576  1.00 25.00           C
ATOM    139  CA  ILE   139     -19.048  -7.956   3.980  1.00 25.00           C
ATOM    140  CA  ASP   140     -20.693  -8.390   0.625  1.00 25.00           C
ATOM    141  CA  GLU   141     -21.817  -9.181  -2.917  1.00 25.00           C
ATOM    142  CA  ILE   142     -22.021  -8.902  -6.720  1.00 25.00           C
ATOM    143  CA  TYR   143     -25.256  -8.112  -8.413  1.00 25.00           C
ATOM    144  CA  ASN   144     -28.457  -6.360  -9.398  1.00 25.00           C
ATOM    145  CA  TYR   145     -31.603  -4.733  -7.970  1.00 25.00           C
TER
END
