
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  145 (  145),  selected  142 , name T0380TS168_5
# Molecule2: number of CA atoms  142 ( 1146),  selected  142 , name T0380.pdb
# PARAMETERS: T0380TS168_5.T0380.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   103         2 - 104         4.75    14.38
  LCS_AVERAGE:     56.25

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        49 - 65          1.96    14.09
  LONGEST_CONTINUOUS_SEGMENT:    17        66 - 82          1.96    16.32
  LCS_AVERAGE:      8.24

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         2 - 15          0.94    15.97
  LCS_AVERAGE:      4.24

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     I       2     I       2     14   15  103     3    3   12   17   23   43   56   67   73   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     D       3     D       3     14   15  103     3   12   15   19   23   28   39   51   64   75   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E       4     E       4     14   15  103    10   13   15   19   23   36   49   63   73   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K       5     K       5     14   15  103    10   13   15   24   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     F       6     F       6     14   15  103     5   13   15   24   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L       7     L       7     14   15  103    10   13   15   19   37   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     I       8     I       8     14   15  103    10   13   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E       9     E       9     14   15  103    10   13   16   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     S      10     S      10     14   15  103    10   13   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      11     N      11     14   15  103    10   13   15   23   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      12     E      12     14   15  103    10   14   15   22   40   49   58   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      13     L      13     14   15  103    10   14   15   30   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     V      14     V      14     14   15  103    10   13   15   21   40   49   58   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      15     E      15     14   15  103    10   13   15   19   23   26   46   57   64   75   83   88   92   98  100  100  100  101  102  102 
LCS_GDT     S      16     S      16      5   15  103     3    6   14   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     S      17     S      17      5   14  103     3    7   13   19   30   41   51   63   71   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      18     K      18      5   14  103     3    5    9   12   20   33   43   54   66   73   79   86   95   98  100  100  100  101  102  102 
LCS_GDT     I      19     I      19      5   14  103     3    5   11   17   29   37   47   59   69   76   83   89   95   98  100  100  100  101  102  102 
LCS_GDT     V      20     V      20      5   14  103     4   10   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      21     M      21      5   14  103     3   10   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     V      22     V      22      4   14  103     2   13   17   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      23     G      23      4   14  103     2    7   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     T      24     T      24      4   14  103     4   10   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      25     N      25      4   14  103     4    7   13   27   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      26     G      26      4   14  103     4    8   15   23   33   48   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      27     E      27      5   14  103     4    5   15   23   32   46   58   67   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      28     N      28      5   10  103     3    6   14   24   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      29     G      29      5   10  103     3    4   11   23   35   48   58   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     Y      30     Y      30      6   11  103     5    5    9   11   14   20   37   48   58   71   83   89   95   98  100  100  100  101  102  102 
LCS_GDT     P      31     P      31      6   11  103     5    5    9   11   13   19   32   40   50   67   77   88   95   98  100  100  100  101  102  102 
LCS_GDT     N      32     N      32      6   11  103     5    5    9   12   18   33   50   69   74   79   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     I      33     I      33      6   11  103     5    5    9   12   16   33   44   69   74   79   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      34     K      34      6   11  103     5    7   14   27   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     A      35     A      35      6   11  103     3    3    4   12   19   33   54   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      36     M      36      4   11  103     3    6   12   25   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      37     M      37      4   11  103     5   10   18   30   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     R      38     R      38      4   11  103     3    7   13   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      39     L      39      4   11  103     3    4   11   22   35   43   55   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      40     K      40      4   11  103     3    4    9   21   35   47   58   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     H      41     H      41      3    8  103     3    3    4   12   16   35   54   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     D      42     D      42      4    8  103     3    4    8   16   31   47   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      43     G      43      4    8  103     3    4    4    7    9   13   36   52   66   75   79   89   95   98  100  100  100  101  102  102 
LCS_GDT     L      44     L      44      4    8  103     3    4    4    5    9   13   36   40   62   75   79   87   95   98  100  100  100  101  102  102 
LCS_GDT     K      45     K      45      4    8  103     3    4    9   21   31   47   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      46     K      46      4    9  103     6   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     F      47     F      47      4    9  103     8   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     W      48     W      48      4    9  103     3    4    5   11   20   37   48   61   71   78   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      49     L      49      5   17  103     3   14   15   30   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     S      50     S      50      5   17  103     3    9   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     T      51     T      51      5   17  103     4    5   15   23   35   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      52     N      52      5   17  103     4    5   12   21   35   47   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     T      53     T      53      5   17  103     4    5   12   23   35   46   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     S      54     S      54      4   17  103     4    7   12   23   36   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     T      55     T      55     10   17  103     3    3    5   16   29   39   51   61   71   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     R      56     R      56     10   17  103     8   10   13   22   35   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      57     M      57     10   17  103     8   10   13   23   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     V      58     V      58     10   17  103     8   10   16   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      59     E      59     10   17  103     8   10   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     R      60     R      60     10   17  103     8   10   17   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      61     L      61     10   17  103     8   10   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      62     K      62     10   17  103     8   10   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      63     K      63     10   17  103     8   10   17   31   40   49   59   67   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      64     N      64     10   17  103     3   10   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      65     N      65     10   17  103     3   10   13   28   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      66     K      66      5   17  103     3    5   10   17   35   47   55   65   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     I      67     I      67      5   17  103     3    8   12   18   26   48   58   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     C      68     C      68      5   17  103     3    5   14   19   21   25   33   50   70   79   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      69     L      69      5   17  103     3   13   15   19   38   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     Y      70     Y      70      4   17  103     3    8   12   17   33   47   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     F      71     F      71      4   17  103     3    8   13   21   33   47   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     V      72     V      72      4   17  103     3    5    9   17   31   44   57   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     D      73     D      73      4   17  103     1    5    9   16   23   39   51   62   71   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     D      74     D      74      6   17  103     3    8   12   21   30   41   51   61   69   75   83   90   95   98  100  100  100  101  102  102 
LCS_GDT     N      75     N      75      6   17  103     4    8   12   21   30   40   51   60   69   75   81   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      76     K      76      6   17  103     4    8   12   21   30   40   51   60   69   75   81   90   95   98  100  100  100  101  102  102 
LCS_GDT     F      77     F      77      6   17  103     4    8   11   17   26   34   47   59   67   75   79   86   95   98  100  100  100  101  102  102 
LCS_GDT     A      78     A      78      6   17  103     3    8   12   21   30   41   51   61   71   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      79     G      79      6   17  103     3    6   11   21   30   41   51   61   71   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      80     L      80      6   17  103     3    6    9   16   30   42   56   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      81     M      81      6   17  103     3    7   10   14   20   39   51   63   73   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      82     L      82      6   17  103     4    5   11   20   38   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     V      83     V      83      6   12  103     4    5   15   19   20   26   34   51   70   79   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     G      84     G      84      4   12  103     4    4   15   19   23   26   34   38   55   76   82   90   95   98  100  100  100  101  102  102 
LCS_GDT     T      85     T      85      4   12  103     4   12   15   18   23   26   45   56   73   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     I      86     I      86      4   14  103     2    6   10   24   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      87     E      87      3   14  103     3    3    8   22   36   49   59   67   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     I      88     I      88      3   14  103     3    3   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      89     L      89      3   14  103     3    8   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     H      90     H      90     10   14  103     3    3    7   12   17   38   55   65   74   78   84   88   95   98  100  100  100  101  102  102 
LCS_GDT     D      91     D      91     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     R      92     R      92     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     A      93     A      93     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     S      94     S      94     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     K      95     K      95     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     E      96     E      96     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     M      97     M      97     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     L      98     L      98     10   14  103     9   14   18   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     W      99     W      99     10   14  103     9   14   15   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     T     100     T     100      4   14  103     3    4   14   31   40   49   59   69   74   80   84   90   95   98  100  100  100  101  102  102 
LCS_GDT     D     101     D     101      4    6  103     3    4    4   11   22   37   47   58   69   76   83   88   95   98  100  100  100  101  102  102 
LCS_GDT     G     102     G     102      4    6  103     3    4    7   13   17   20   28   37   46   55   60   68   78   85   91   96   99  101  102  102 
LCS_GDT     C     103     C     103      3    6  103     3    3    5   12   17   19   26   33   46   51   58   65   74   80   90   93   99  101  102  102 
LCS_GDT     E     104     E     104      3    6  103     0    3    3    3    6    7   11   16   19   23   29   37   44   53   57   62   66   73   79   88 
LCS_GDT     I     105     I     105      3    4   93     0    3    4    5    7    9   10   13   17   25   29   32   39   42   44   48   54   62   68   72 
LCS_GDT     Y     106     Y     106      3    5   20     0    3    4    6    9   14   19   22   26   28   30   35   39   43   45   48   54   62   68   72 
LCS_GDT     Y     107     Y     107      3    6   20     0    3    4    6   10   14   18   22   26   28   30   35   39   43   45   48   52   56   61   67 
LCS_GDT     P     108     P     108      4    7   20     0    4    4    6   10   14   19   22   26   28   30   35   39   43   45   46   52   55   60   65 
LCS_GDT     L     109     L     109      4    7   20     3    4    4    7   10   14   19   22   26   28   30   35   39   43   45   47   52   56   60   65 
LCS_GDT     G     110     G     110      4    7   20     3    4    4    7    9   14   19   22   26   28   30   35   39   43   45   47   52   56   60   65 
LCS_GDT     I     111     I     111      4    7   20     3    4    4    5    6   10   19   22   26   28   30   35   39   43   45   47   52   56   60   65 
LCS_GDT     D     112     D     112      4    7   20     3    3    4    7   10   14   19   22   26   28   30   35   39   43   45   46   49   53   58   62 
LCS_GDT     D     113     D     113      4    7   20     3    3    4    4    6   10   11   20   22   26   27   32   32   37   39   45   47   53   56   59 
LCS_GDT     P     114     P     114      3    7   20     3    3    4    5    7   10   11   13   16   21   25   30   32   37   39   46   47   49   55   59 
LCS_GDT     D     115     D     115      3    7   20     3    3    4    5    6   14   19   22   26   28   30   35   39   43   45   48   52   56   61   65 
LCS_GDT     Y     116     Y     116      5    7   20     3    5    5    6    6    7   17   21   26   28   30   35   39   43   46   52   59   65   68   74 
LCS_GDT     T     117     T     117      5    7   20     3    5    5    6    7   13   18   21   26   28   30   35   39   43   50   54   59   66   70   79 
LCS_GDT     A     118     A     118      5    7   20     3    5    5    6    6    9   18   21   24   28   30   35   39   42   50   62   63   68   72   81 
LCS_GDT     L     119     L     119      5    7   20     3    5    5    7    9   13   18   21   26   28   30   35   39   43   53   62   63   68   75   86 
LCS_GDT     C     120     C     120      5    7   20     3    5    5    6    7   13   18   21   24   27   29   32   38   43   50   54   59   66   71   77 
LCS_GDT     F     121     F     121      5    7   20     3    4    5   10   11   14   19   22   26   28   30   35   39   43   49   54   59   66   71   77 
LCS_GDT     T     122     T     122      3    7   20     3    3    3    4    5   10   14   19   23   28   30   35   39   43   53   57   63   66   71   77 
LCS_GDT     A     123     A     123      4    5   20     4    4    4    8   11   15   18   25   30   34   37   44   51   56   61   64   73   79   82   88 
LCS_GDT     E     124     E     124      4    5   19     4    4    4    8   11   15   19   21   27   34   36   43   51   55   58   63   67   71   76   80 
LCS_GDT     W     125     W     125      4    5   13     4    4    4    8   11   16   20   22   29   34   36   43   51   56   58   63   67   72   76   80 
LCS_GDT     G     126     G     126      4    5   13     4    4    4    9   14   18   20   25   29   34   42   47   52   56   61   64   75   79   83   89 
LCS_GDT     N     127     N     127      3    5   13     3    3    3    5    7    9   16   19   20   29   35   43   51   56   62   65   78   81   87   89 
LCS_GDT     Y     128     Y     128      3    6   14     3    3    3    5    7    8   10   11   13   17   22   28   30   37   49   52   53   62   69   75 
LCS_GDT     Y     129     Y     129      4    6   14     3    4    5    6    7    8   10   11   13   17   22   28   31   45   51   55   78   81   83   87 
LCS_GDT     R     130     R     130      4    6   14     3    4    5    6    7    8   10   11   13   14   18   20   27   37   51   63   78   81   83   90 
LCS_GDT     H     131     H     131      4    6   14     3    4    5    6    7    8   10   11   13   14   18   20   22   25   44   48   55   57   62   73 
LCS_GDT     L     132     L     132      4    6   14     3    4    5    6    7    8   10   11   13   14   23   26   31   37   51   55   63   68   72   80 
LCS_GDT     K     133     K     133      4    6   14     3    4    5    6    7    8   10   11   17   17   22   28   31   38   44   48   52   56   61   70 
LCS_GDT     N     134     N     134      4    6   14     3    4    4    5    7    8   10   11   13   16   21   24   27   35   42   46   50   54   56   62 
LCS_GDT     I     135     I     135      3    5   14     0    3    4    5    6    9   10   12   12   17   20   22   22   30   34   38   47   50   56   59 
LCS_GDT     T     136     T     136      3    5   14     1    3    4    5    6    9   10   12   12   14   16   18   20   28   32   36   39   48   56   59 
LCS_GDT     F     137     F     137      3    5   14     0    3    4    5    5    8   10   10   12   14   16   19   23   28   31   33   39   43   51   54 
LCS_GDT     K     138     K     138      3    5   14     0    3    4    6    6    8   12   12   16   18   18   19   23   28   31   33   36   39   51   54 
LCS_GDT     I     139     I     139      3    5   14     0    3    4    5    6    8    9   11   16   18   18   20   28   32   33   36   39   44   51   54 
LCS_GDT     D     140     D     140      0    5   14     0    2    4    5    6    7    7   10   16   18   18   20   23   28   31   33   36   39   42   51 
LCS_GDT     E     141     E     141      0    3   14     0    1    3    3    3    7    7   10   16   18   18   19   23   27   27   33   36   39   42   43 
LCS_GDT     I     142     I     142      0    3   13     0    0    3    3    3    3    4    4    5   10   11   13   16   26   27   30   34   39   43   47 
LCS_GDT     Y     143     Y     143      0    3   13     1    1    3    3    3    3    4    7    7   10   12   13   18   19   27   30   32   36   43   47 
LCS_AVERAGE  LCS_A:  22.91  (   4.24    8.24   56.25 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     18     31     40     49     59     69     74     80     84     90     95     98    100    100    100    101    102    102 
GDT PERCENT_CA   7.04   9.86  12.68  21.83  28.17  34.51  41.55  48.59  52.11  56.34  59.15  63.38  66.90  69.01  70.42  70.42  70.42  71.13  71.83  71.83
GDT RMS_LOCAL    0.26   0.58   1.14   1.54   1.73   2.04   2.41   2.81   2.90   3.21   3.30   3.70   3.93   4.08   4.17   4.17   4.17   4.42   4.45   4.45
GDT RMS_ALL_CA  16.73  14.16  14.08  13.91  13.84  13.90  13.99  13.98  13.98  14.21  14.09  14.38  14.47  14.38  14.45  14.45  14.45  14.40  14.41  14.41

#      Molecule1      Molecule2       DISTANCE
LGA    I       2      I       2          5.618
LGA    D       3      D       3          8.258
LGA    E       4      E       4          6.138
LGA    K       5      K       5          3.816
LGA    F       6      F       6          3.082
LGA    L       7      L       7          3.912
LGA    I       8      I       8          3.242
LGA    E       9      E       9          1.376
LGA    S      10      S      10          2.144
LGA    N      11      N      11          3.791
LGA    E      12      E      12          3.222
LGA    L      13      L      13          2.515
LGA    V      14      V      14          3.883
LGA    E      15      E      15          5.812
LGA    S      16      S      16          2.047
LGA    S      17      S      17          5.560
LGA    K      18      K      18          7.622
LGA    I      19      I      19          6.392
LGA    V      20      V      20          2.137
LGA    M      21      M      21          1.933
LGA    V      22      V      22          3.212
LGA    G      23      G      23          2.921
LGA    T      24      T      24          3.989
LGA    N      25      N      25          3.040
LGA    G      26      G      26          3.820
LGA    E      27      E      27          4.590
LGA    N      28      N      28          3.648
LGA    G      29      G      29          3.815
LGA    Y      30      Y      30          5.709
LGA    P      31      P      31          6.550
LGA    N      32      N      32          3.988
LGA    I      33      I      33          3.991
LGA    K      34      K      34          1.420
LGA    A      35      A      35          3.657
LGA    M      36      M      36          2.046
LGA    M      37      M      37          2.230
LGA    R      38      R      38          1.863
LGA    L      39      L      39          3.852
LGA    K      40      K      40          2.898
LGA    H      41      H      41          3.970
LGA    D      42      D      42          3.675
LGA    G      43      G      43          8.283
LGA    L      44      L      44          8.359
LGA    K      45      K      45          3.774
LGA    K      46      K      46          1.393
LGA    F      47      F      47          1.765
LGA    W      48      W      48          5.237
LGA    L      49      L      49          2.637
LGA    S      50      S      50          1.773
LGA    T      51      T      51          3.275
LGA    N      52      N      52          3.211
LGA    T      53      T      53          3.655
LGA    S      54      S      54          1.860
LGA    T      55      T      55          5.324
LGA    R      56      R      56          3.035
LGA    M      57      M      57          1.915
LGA    V      58      V      58          1.677
LGA    E      59      E      59          3.536
LGA    R      60      R      60          2.991
LGA    L      61      L      61          1.751
LGA    K      62      K      62          3.998
LGA    K      63      K      63          4.805
LGA    N      64      N      64          3.783
LGA    N      65      N      65          3.864
LGA    K      66      K      66          4.411
LGA    I      67      I      67          3.649
LGA    C      68      C      68          5.239
LGA    L      69      L      69          2.214
LGA    Y      70      Y      70          2.875
LGA    F      71      F      71          3.360
LGA    V      72      V      72          3.422
LGA    D      73      D      73          5.668
LGA    D      74      D      74          8.698
LGA    N      75      N      75          9.627
LGA    K      76      K      76          9.751
LGA    F      77      F      77         10.535
LGA    A      78      A      78          6.924
LGA    G      79      G      79          7.045
LGA    L      80      L      80          3.841
LGA    M      81      M      81          5.177
LGA    L      82      L      82          1.826
LGA    V      83      V      83          5.712
LGA    G      84      G      84          6.351
LGA    T      85      T      85          5.258
LGA    I      86      I      86          1.628
LGA    E      87      E      87          4.148
LGA    I      88      I      88          3.730
LGA    L      89      L      89          3.763
LGA    H      90      H      90          4.388
LGA    D      91      D      91          3.068
LGA    R      92      R      92          3.524
LGA    A      93      A      93          2.763
LGA    S      94      S      94          1.707
LGA    K      95      K      95          3.026
LGA    E      96      E      96          3.824
LGA    M      97      M      97          3.084
LGA    L      98      L      98          2.750
LGA    W      99      W      99          3.548
LGA    T     100      T     100          2.823
LGA    D     101      D     101          6.251
LGA    G     102      G     102         11.919
LGA    C     103      C     103         11.509
LGA    E     104      E     104         17.758
LGA    I     105      I     105         20.525
LGA    Y     106      Y     106         21.812
LGA    Y     107      Y     107         25.541
LGA    P     108      P     108         32.672
LGA    L     109      L     109         36.156
LGA    G     110      G     110         36.503
LGA    I     111      I     111         36.375
LGA    D     112      D     112         36.780
LGA    D     113      D     113         34.089
LGA    P     114      P     114         29.878
LGA    D     115      D     115         25.174
LGA    Y     116      Y     116         20.315
LGA    T     117      T     117         16.962
LGA    A     118      A     118         15.555
LGA    L     119      L     119         14.499
LGA    C     120      C     120         16.573
LGA    F     121      F     121         17.249
LGA    T     122      T     122         19.209
LGA    A     123      A     123         16.805
LGA    E     124      E     124         20.856
LGA    W     125      W     125         20.496
LGA    G     126      G     126         17.379
LGA    N     127      N     127         16.577
LGA    Y     128      Y     128         18.840
LGA    Y     129      Y     129         16.003
LGA    R     130      R     130         16.322
LGA    H     131      H     131         21.111
LGA    L     132      L     132         22.124
LGA    K     133      K     133         26.823
LGA    N     134      N     134         27.353
LGA    I     135      I     135         30.096
LGA    T     136      T     136         26.333
LGA    F     137      F     137         24.098
LGA    K     138      K     138         26.603
LGA    I     139      I     139         25.018
LGA    D     140      D     140         30.202
LGA    E     141      E     141         34.902
LGA    I     142      I     142         34.545
LGA    Y     143      Y     143         36.711

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  145  142    4.0     69    2.81    37.676    32.273     2.373

LGA_LOCAL      RMSD =  2.807  Number of atoms =   69  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.170  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 12.928  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.697487 * X  +   0.318013 * Y  +  -0.642168 * Z  +  -7.964670
  Y_new =   0.409056 * X  +  -0.912478 * Y  +  -0.007582 * Z  +  -4.738999
  Z_new =  -0.588375 * X  +  -0.257394 * Y  +  -0.766527 * Z  +  14.211191 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.817630    0.323963  [ DEG:  -161.4383     18.5617 ]
  Theta =   0.629047    2.512545  [ DEG:    36.0418    143.9583 ]
  Phi   =   0.530412   -2.611180  [ DEG:    30.3904   -149.6096 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0380TS168_5                                  
REMARK     2: T0380.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0380TS168_5.T0380.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  145  142   4.0   69   2.81  32.273    12.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0380TS168_5
PFRMAT TS
TARGET T0380
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1     -23.003  -2.886  -0.430  1.00 25.00           C
ATOM      2  CA  ILE     2     -23.095   0.710   0.789  1.00 25.00           C
ATOM      3  CA  ASP     3     -20.643   1.646  -2.023  1.00 25.00           C
ATOM      4  CA  GLU     4     -17.637   3.658  -0.940  1.00 25.00           C
ATOM      5  CA  LYS     5     -18.896   6.441   1.370  1.00 25.00           C
ATOM      6  CA  PHE     6     -18.850   4.029   4.343  1.00 25.00           C
ATOM      7  CA  LEU     7     -15.269   2.987   3.474  1.00 25.00           C
ATOM      8  CA  ILE     8     -14.222   6.665   3.276  1.00 25.00           C
ATOM      9  CA  GLU     9     -15.829   7.332   6.687  1.00 25.00           C
ATOM     10  CA  SER    10     -13.981   4.326   8.174  1.00 25.00           C
ATOM     11  CA  ASN    11     -10.677   5.606   6.719  1.00 25.00           C
ATOM     12  CA  GLU    12     -11.334   9.072   8.210  1.00 25.00           C
ATOM     13  CA  LEU    13     -12.072   7.492  11.620  1.00 25.00           C
ATOM     14  CA  VAL    14      -8.821   5.479  11.418  1.00 25.00           C
ATOM     15  CA  GLU    15      -6.875   8.661  10.551  1.00 25.00           C
ATOM     16  CA  SER    16      -5.696   6.067   7.947  1.00 25.00           C
ATOM     17  CA  SER    17      -6.580   2.513   6.811  1.00 25.00           C
ATOM     18  CA  LYS    18      -9.416   0.830   8.593  1.00 25.00           C
ATOM     19  CA  ILE    19      -8.436  -1.095  11.777  1.00 25.00           C
ATOM     20  CA  VAL    20      -6.853   1.000  14.527  1.00 25.00           C
ATOM     21  CA  MET    21      -7.329   0.037  18.177  1.00 25.00           C
ATOM     22  CA  VAL    22      -7.257  -2.822  20.597  1.00 25.00           C
ATOM     23  CA  GLY    23      -8.765  -5.121  23.199  1.00 25.00           C
ATOM     24  CA  THR    24     -11.485  -7.654  24.128  1.00 25.00           C
ATOM     25  CA  ASN    25      -9.746 -10.463  26.051  1.00 25.00           C
ATOM     26  CA  GLY    26     -11.725 -13.664  26.915  1.00 25.00           C
ATOM     27  CA  GLU    27     -11.657 -16.246  29.718  1.00 25.00           C
ATOM     28  CA  ASN    28     -13.360 -14.911  32.848  1.00 25.00           C
ATOM     29  CA  GLY    29     -10.331 -12.814  33.708  1.00 25.00           C
ATOM     30  CA  TYR    30      -6.747 -13.518  32.595  1.00 25.00           C
ATOM     31  CA  PRO    31      -6.342 -13.183  28.843  1.00 25.00           C
ATOM     32  CA  ASN    32      -4.854  -9.778  27.951  1.00 25.00           C
ATOM     33  CA  ILE    33      -4.628  -7.963  24.562  1.00 25.00           C
ATOM     34  CA  LYS    34      -2.936  -4.744  23.333  1.00 25.00           C
ATOM     35  CA  ALA    35      -3.241  -5.775  19.674  1.00 25.00           C
ATOM     36  CA  MET    36      -3.904  -4.142  16.260  1.00 25.00           C
ATOM     37  CA  MET    37      -2.665  -1.634  13.683  1.00 25.00           C
ATOM     38  CA  ARG    38      -1.994  -1.069   9.974  1.00 25.00           C
ATOM     39  CA  LEU    39      -4.428  -3.195   8.023  1.00 25.00           C
ATOM     40  CA  LYS    40      -5.940  -2.470   4.655  1.00 25.00           C
ATOM     41  CA  HIS    41      -5.214  -3.846   1.199  1.00 25.00           C
ATOM     42  CA  ASP    42      -7.728  -6.029  -0.571  1.00 25.00           C
ATOM     43  CA  GLY    43      -9.939  -9.008  -1.578  1.00 25.00           C
ATOM     44  CA  LEU    44     -13.470  -9.307  -0.104  1.00 25.00           C
ATOM     45  CA  LYS    45     -11.893  -9.600   3.346  1.00 25.00           C
ATOM     46  CA  LYS    46     -11.584  -7.351   6.434  1.00 25.00           C
ATOM     47  CA  PHE    47      -8.816  -5.664   8.435  1.00 25.00           C
ATOM     48  CA  TRP    48      -6.873  -5.715  11.673  1.00 25.00           C
ATOM     49  CA  LEU    49      -4.154  -8.193  12.822  1.00 25.00           C
ATOM     50  CA  SER    50      -0.494  -7.633  13.664  1.00 25.00           C
ATOM     51  CA  THR    51      -0.871  -9.357  17.038  1.00 25.00           C
ATOM     52  CA  ASN    52       2.528 -11.145  17.373  1.00 25.00           C
ATOM     53  CA  THR    53       2.049 -14.780  18.409  1.00 25.00           C
ATOM     54  CA  SER    54       4.034 -15.339  21.585  1.00 25.00           C
ATOM     55  CA  THR    55       2.633 -12.002  22.711  1.00 25.00           C
ATOM     56  CA  ARG    56      -0.167 -13.165  24.986  1.00 25.00           C
ATOM     57  CA  MET    57      -2.246 -12.936  21.779  1.00 25.00           C
ATOM     58  CA  VAL    58      -1.796 -16.694  21.189  1.00 25.00           C
ATOM     59  CA  GLU    59      -2.895 -17.414  24.786  1.00 25.00           C
ATOM     60  CA  ARG    60      -5.987 -15.203  24.310  1.00 25.00           C
ATOM     61  CA  LEU    61      -6.835 -17.047  21.063  1.00 25.00           C
ATOM     62  CA  LYS    62      -6.472 -20.415  22.850  1.00 25.00           C
ATOM     63  CA  LYS    63      -8.771 -19.198  25.661  1.00 25.00           C
ATOM     64  CA  ASN    64     -12.031 -17.897  24.254  1.00 25.00           C
ATOM     65  CA  ASN    65     -12.656 -16.567  20.734  1.00 25.00           C
ATOM     66  CA  LYS    66     -10.622 -13.609  21.908  1.00 25.00           C
ATOM     67  CA  ILE    67      -9.079 -10.420  20.397  1.00 25.00           C
ATOM     68  CA  CYS    68      -7.929  -7.389  18.431  1.00 25.00           C
ATOM     69  CA  LEU    69      -9.198  -4.798  15.893  1.00 25.00           C
ATOM     70  CA  TYR    70     -12.204  -2.688  14.755  1.00 25.00           C
ATOM     71  CA  PHE    71     -13.181   0.561  13.108  1.00 25.00           C
ATOM     72  CA  VAL    72     -13.881   2.986  15.990  1.00 25.00           C
ATOM     73  CA  ASP    73     -15.870   5.924  14.713  1.00 25.00           C
ATOM     74  CA  ASP    74     -18.051   8.868  13.755  1.00 25.00           C
ATOM     75  CA  ASN    75     -18.765  11.733  11.330  1.00 25.00           C
ATOM     76  CA  LYS    76     -21.149   9.435   9.393  1.00 25.00           C
ATOM     77  CA  PHE    77     -22.622   6.846  11.800  1.00 25.00           C
ATOM     78  CA  ALA    78     -19.571   4.634  11.264  1.00 25.00           C
ATOM     79  CA  GLY    79     -19.550   0.864  11.883  1.00 25.00           C
ATOM     80  CA  LEU    80     -17.533  -1.869  13.716  1.00 25.00           C
ATOM     81  CA  MET    81     -15.471  -3.598  11.005  1.00 25.00           C
ATOM     82  CA  LEU    82     -15.140  -6.569  13.388  1.00 25.00           C
ATOM     83  CA  VAL    83     -11.826  -7.878  12.058  1.00 25.00           C
ATOM     84  CA  GLY    84      -9.143  -9.636  14.104  1.00 25.00           C
ATOM     85  CA  THR    85      -8.047 -12.538  16.251  1.00 25.00           C
ATOM     86  CA  ILE    86      -8.241 -15.541  13.996  1.00 25.00           C
ATOM     87  CA  GLU    87      -5.491 -17.195  16.127  1.00 25.00           C
ATOM     88  CA  ILE    88      -3.181 -14.343  15.303  1.00 25.00           C
ATOM     89  CA  LEU    89      -2.886 -15.231  11.620  1.00 25.00           C
ATOM     90  CA  HIS    90      -1.152 -16.718   8.559  1.00 25.00           C
ATOM     91  CA  ASP    91       1.408 -19.337   7.825  1.00 25.00           C
ATOM     92  CA  ARG    92       4.738 -17.562   7.642  1.00 25.00           C
ATOM     93  CA  ALA    93       4.908 -16.014   4.144  1.00 25.00           C
ATOM     94  CA  SER    94       1.518 -14.320   4.702  1.00 25.00           C
ATOM     95  CA  LYS    95       2.732 -12.943   8.063  1.00 25.00           C
ATOM     96  CA  GLU    96       5.907 -11.600   6.393  1.00 25.00           C
ATOM     97  CA  MET    97       3.797  -9.929   3.668  1.00 25.00           C
ATOM     98  CA  LEU    98       1.562  -8.338   6.340  1.00 25.00           C
ATOM     99  CA  TRP    99       4.655  -7.047   8.193  1.00 25.00           C
ATOM    100  CA  THR   100       6.022  -5.572   4.933  1.00 25.00           C
ATOM    101  CA  ASP   101       2.661  -3.861   4.269  1.00 25.00           C
ATOM    102  CA  GLY   102       0.145  -5.395   1.898  1.00 25.00           C
ATOM    103  CA  CYS   103      -2.403  -6.316   4.612  1.00 25.00           C
ATOM    104  CA  GLU   104      -4.810  -9.041   5.691  1.00 25.00           C
ATOM    105  CA  ILE   105      -6.474 -10.263   8.885  1.00 25.00           C
ATOM    106  CA  TYR   106      -9.752 -11.937   9.597  1.00 25.00           C
ATOM    107  CA  TYR   107     -13.506 -11.871   9.469  1.00 25.00           C
ATOM    108  CA  PRO   108     -16.395 -13.960   8.151  1.00 25.00           C
ATOM    109  CA  LEU   109     -19.817 -15.585   7.842  1.00 25.00           C
ATOM    110  CA  GLY   110     -23.078 -14.151   9.206  1.00 25.00           C
ATOM    111  CA  ILE   111     -25.580 -13.754  11.967  1.00 25.00           C
ATOM    112  CA  ASP   112     -23.984 -15.532  14.914  1.00 25.00           C
ATOM    113  CA  ASP   113     -21.598 -12.721  15.991  1.00 25.00           C
ATOM    114  CA  PRO   114     -18.637 -10.510  14.917  1.00 25.00           C
ATOM    115  CA  ASP   115     -16.119 -13.132  13.804  1.00 25.00           C
ATOM    116  CA  TYR   116     -12.888 -14.855  14.820  1.00 25.00           C
ATOM    117  CA  THR   117     -12.922 -12.350  17.645  1.00 25.00           C
ATOM    118  CA  ALA   118     -12.748  -8.563  17.483  1.00 25.00           C
ATOM    119  CA  LEU   119     -12.647  -5.252  19.352  1.00 25.00           C
ATOM    120  CA  CYS   120     -12.647  -1.476  19.676  1.00 25.00           C
ATOM    121  CA  PHE   121     -12.592   1.615  21.875  1.00 25.00           C
ATOM    122  CA  THR   122     -14.146  -0.741  24.490  1.00 25.00           C
ATOM    123  CA  ALA   123     -17.835  -0.213  23.729  1.00 25.00           C
ATOM    124  CA  GLU   124     -17.873   1.656  27.054  1.00 25.00           C
ATOM    125  CA  TRP   125     -15.264   4.390  27.247  1.00 25.00           C
ATOM    126  CA  GLY   126     -12.383   5.595  25.028  1.00 25.00           C
ATOM    127  CA  ASN   127     -10.349   2.743  26.512  1.00 25.00           C
ATOM    128  CA  TYR   128      -6.927   1.025  26.477  1.00 25.00           C
ATOM    129  CA  TYR   129      -6.392   2.110  22.843  1.00 25.00           C
ATOM    130  CA  ARG   130      -7.328   5.710  23.754  1.00 25.00           C
ATOM    131  CA  HIS   131      -4.874   6.855  26.413  1.00 25.00           C
ATOM    132  CA  LEU   132      -2.320   6.565  23.696  1.00 25.00           C
ATOM    133  CA  LYS   133      -0.337   4.500  26.179  1.00 25.00           C
ATOM    134  CA  ASN   134       1.237   1.633  24.309  1.00 25.00           C
ATOM    135  CA  ILE   135       2.937   3.876  21.660  1.00 25.00           C
ATOM    136  CA  THR   136      -0.340   3.338  19.871  1.00 25.00           C
ATOM    137  CA  PHE   137      -2.537   1.595  17.384  1.00 25.00           C
ATOM    138  CA  LYS   138       0.166   2.403  14.766  1.00 25.00           C
ATOM    139  CA  ILE   139       1.325   3.233  11.224  1.00 25.00           C
ATOM    140  CA  ASP   140       3.132   5.544   8.736  1.00 25.00           C
ATOM    141  CA  GLU   141       6.102   7.750   8.060  1.00 25.00           C
ATOM    142  CA  ILE   142       8.388  10.236   6.416  1.00 25.00           C
ATOM    143  CA  TYR   143       9.683  13.260   4.426  1.00 25.00           C
ATOM    144  CA  ASN   144       7.833  14.438   1.308  1.00 25.00           C
ATOM    145  CA  TYR   145       4.548  15.041  -0.546  1.00 25.00           C
TER
END
