
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  145 (  145),  selected  142 , name T0380TS393_4
# Molecule2: number of CA atoms  142 ( 1146),  selected  142 , name T0380.pdb
# PARAMETERS: T0380TS393_4.T0380.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104         2 - 105         4.74    13.21
  LCS_AVERAGE:     56.91

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        55 - 82          1.99    13.56
  LCS_AVERAGE:      9.81

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         2 - 16          0.95    19.12
  LCS_AVERAGE:      4.66

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     I       2     I       2     15   16  104     0    6    8   15   32   53   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D       3     D       3     15   16  104     3    5   19   29   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E       4     E       4     15   16  104    10   13   14   32   43   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K       5     K       5     15   16  104    10   13   22   32   43   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     F       6     F       6     15   16  104     4   13   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L       7     L       7     15   16  104     9   13   14   27   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I       8     I       8     15   16  104    10   13   14   31   43   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E       9     E       9     15   16  104    10   13   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      10     S      10     15   16  104    10   13   14   29   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      11     N      11     15   16  104    10   13   14   20   38   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      12     E      12     15   16  104    10   13   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      13     L      13     15   16  104    10   13   19   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     V      14     V      14     15   16  104    10   13   14   22   37   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      15     E      15     15   16  104    10   13   14   20   35   53   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      16     S      16     15   16  104    10   13   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      17     S      17      4   16  104     2   10   18   31   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      18     K      18      4   15  104     1    5   18   25   30   38   52   69   80   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I      19     I      19      3    9  104     0    3    8   13   15   19   27   43   56   61   78   90   96   98  100  102  103  105  105  105 
LCS_GDT     V      20     V      20      3    9  104     3    6   10   17   26   44   59   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      21     M      21      3    9  104     1    3    7   15   26   44   59   71   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     V      22     V      22      4    9  104     3   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G      23     G      23      4    9  104     5   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     T      24     T      24      5    9  104     3    7   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      25     N      25      5    9  104     3    5    8   19   31   46   61   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G      26     G      26      5    9  104     3    5    7    9   17   39   55   71   82   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      27     E      27      5    9  104     3    5    5    6    9   12   20   28   31   40   48   82   90   95   99  102  103  105  105  105 
LCS_GDT     N      28     N      28      5    7  104     3    5    5    6   10   12   20   28   32   46   64   85   92   95   98  102  103  105  105  105 
LCS_GDT     G      29     G      29      3   10  104     3    3    4   11   16   21   37   55   72   81   87   92   93   97   99  102  103  105  105  105 
LCS_GDT     Y      30     Y      30      5   11  104     3    4   11   20   40   53   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     P      31     P      31      5   11  104     4    4    8   16   27   42   58   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      32     N      32      5   11  104     4    6   13   18   31   47   64   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I      33     I      33      5   11  104     4    6   13   23   39   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      34     K      34      5   11  104     4    8   18   29   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     A      35     A      35      5   11  104     3    5   12   19   30   41   62   71   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      36     M      36      5   11  104     3    6   18   24   31   47   64   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      37     M      37      5   11  104     3    9   18   25   31   50   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     R      38     R      38      5   11  104     3    5   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      39     L      39      5   11  104     3    6   18   25   31   40   54   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      40     K      40      5   11  104     4   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     H      41     H      41      5    9  104     4    5    8   18   32   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D      42     D      42      5    6  104     4    5    8   20   27   39   57   71   82   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G      43     G      43      5    8  104     4    5    5    6    9   16   32   45   61   76   86   92   97   98  100  102  103  105  105  105 
LCS_GDT     L      44     L      44      4    8  104     3    3    5    6    9   20   32   45   61   76   86   92   97   98  100  102  103  105  105  105 
LCS_GDT     K      45     K      45      4    8  104     3    7   15   23   36   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      46     K      46      5    9  104     3    4   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     F      47     F      47      5    9  104     4   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     W      48     W      48      5    9  104     3    3   15   19   25   36   53   68   82   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      49     L      49      5    9  104     3    7   15   20   30   40   62   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      50     S      50      5    9  104     3    5    6   11   14   21   33   54   67   78   90   93   97   98  100  102  103  105  105  105 
LCS_GDT     T      51     T      51      5    9  104     4    5   11   21   35   49   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      52     N      52      5    9  104     4    5    6   14   31   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     T      53     T      53      5   22  104     4    5    8   17   24   37   59   71   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      54     S      54      5   22  104     4    5    7   17   28   38   53   71   77   87   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     T      55     T      55     11   28  104     4    9   18   26   37   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     R      56     R      56     11   28  104     8   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      57     M      57     11   28  104     8   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     V      58     V      58     11   28  104     8    9   18   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      59     E      59     11   28  104     8   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     R      60     R      60     11   28  104     8   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      61     L      61     11   28  104     8   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      62     K      62     11   28  104     8    9   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      63     K      63     11   28  104     8   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      64     N      64     11   28  104     4   10   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      65     N      65     11   28  104     3    8   18   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      66     K      66      6   28  104     3    3    9   24   40   49   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I      67     I      67      6   28  104     6   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     C      68     C      68      6   28  104     5   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      69     L      69      6   28  104     4    7   18   26   38   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     Y      70     Y      70      6   28  104     4    8   18   30   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     F      71     F      71      5   28  104     4   11   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     V      72     V      72      5   28  104     4   11   20   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D      73     D      73      7   28  104     3    6   15   23   37   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D      74     D      74      7   28  104     3    7   15   23   36   50   64   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     N      75     N      75      7   28  104     3    6   12   23   33   48   59   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      76     K      76      7   28  104     3    6   13   20   33   49   61   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     F      77     F      77      7   28  104     3    5   12   19   33   49   61   72   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     A      78     A      78      7   28  104     3    8   15   25   39   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G      79     G      79      7   28  104     4    8   15   23   39   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      80     L      80      7   28  104     4    8   15   23   39   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      81     M      81      7   28  104     4    8   15   23   37   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      82     L      82      7   28  104     4    8   15   23   35   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     V      83     V      83      7   17  104     3    6   13   20   26   35   48   61   75   85   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G      84     G      84      7   16  104     3    6   13   20   26   40   56   71   79   86   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     T      85     T      85      5   16  104     3    4    7   18   25   37   49   71   77   85   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I      86     I      86      5   16  104     3    4    6   10   24   42   58   71   82   88   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      87     E      87      4   16  104     4   11   20   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     I      88     I      88      4   16  104     3    9   22   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      89     L      89     11   14  104     3    9   18   28   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     H      90     H      90     11   14  104     3    8   16   28   35   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D      91     D      91     11   14  104     4   10   14   28   42   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     R      92     R      92     11   14  104     8   10   12   25   40   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     A      93     A      93     11   14  104     8   11   19   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     S      94     S      94     11   14  104     8   11   19   32   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     K      95     K      95     11   14  104     8   10   19   29   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     E      96     E      96     11   14  104     8   10   19   25   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     M      97     M      97     11   14  104     8   10   13   29   43   54   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     L      98     L      98     11   14  104     8   10   12   21   40   53   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     W      99     W      99     11   14  104     8   10   13   20   36   51   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     T     100     T     100      4   14  104     3    3    4    6   27   45   58   71   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     D     101     D     101      4    5  104     3    3    6   12   20   30   55   67   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     G     102     G     102      4    5  104     3    3    5    8   11   20   27   38   48   60   77   87   94   97  100  101  102  105  105  105 
LCS_GDT     C     103     C     103      3    5  104     3    3    3    5    9   14   24   31   44   59   74   87   94   97  100  101  103  105  105  105 
LCS_GDT     E     104     E     104      3    4  104     3    3    3    5    7    8   10   15   16   16   23   28   42   47   58   63   67   71   88   98 
LCS_GDT     I     105     I     105      3    4  104     3    4    4    5    7    8   11   11   14   16   19   21   26   30   39   45   48   65   73   77 
LCS_GDT     Y     106     Y     106      3    5   18     1    4    4    6   10   10   11   12   14   16   18   20   26   30   39   45   48   53   59   71 
LCS_GDT     Y     107     Y     107      3    5   19     0    4    5    6   10   11   11   12   13   17   19   21   24   27   33   45   48   49   55   60 
LCS_GDT     P     108     P     108      3    6   19     0    3    4    6   10   11   11   12   13   16   19   21   22   26   33   35   36   38   41   49 
LCS_GDT     L     109     L     109      4    6   19     1    4    4    5    7   11   11   13   14   17   19   21   23   27   33   35   37   38   41   43 
LCS_GDT     G     110     G     110      4    6   19     0    4    4    5    7    8   11   13   14   17   19   21   23   27   33   35   37   38   41   49 
LCS_GDT     I     111     I     111      4    6   19     3    4    4    5    6    8   10   11   13   15   17   20   23   27   33   35   37   43   45   49 
LCS_GDT     D     112     D     112      4    6   19     3    4    4    5    7    8   11   11   13   16   18   20   23   27   33   35   37   38   41   42 
LCS_GDT     D     113     D     113      3    6   19     3    3    4    4    6    8   10   12   14   16   19   21   22   24   27   29   34   36   39   43 
LCS_GDT     P     114     P     114      3    8   19     3    3    4    7    7   11   12   12   14   17   19   21   22   24   27   31   34   36   40   43 
LCS_GDT     D     115     D     115      3    8   19     3    4    5    6    7   11   12   13   14   17   19   21   24   28   33   40   43   50   54   60 
LCS_GDT     Y     116     Y     116      3    8   19     3    4    4    7    7   11   12   13   14   17   19   21   24   27   33   36   43   49   55   59 
LCS_GDT     T     117     T     117      4    8   19     3    3    5    7    7    9   12   13   14   18   23   29   34   40   57   69   74   84   97   99 
LCS_GDT     A     118     A     118      4    8   19     3    3    5    7    9   12   15   21   25   44   50   61   71   88   95  100  103  105  105  105 
LCS_GDT     L     119     L     119      4    8   19     3    5   15   20   38   53   66   73   83   89   91   94   97   98  100  102  103  105  105  105 
LCS_GDT     C     120     C     120      4    8   19     3    4    6    8   16   21   33   40   60   70   78   87   94   96   99  102  103  105  105  105 
LCS_GDT     F     121     F     121      4    8   19     3    3    5    8    9   10   12   13   19   23   43   48   52   67   74   83   84   94  102  103 
LCS_GDT     T     122     T     122      4    8   19     3    4    6    8    9   10   12   13   14   17   19   21   23   31   36   39   42   46   48   52 
LCS_GDT     A     123     A     123      4    8   19     3    4    6    6    9   10   12   13   14   17   19   21   22   26   33   35   36   38   41   43 
LCS_GDT     E     124     E     124      4    8   19     3    3    6    8    9   10   12   13   14   17   19   21   22   26   33   35   36   38   41   43 
LCS_GDT     W     125     W     125      4    8   19     3    3    6    8    9   10   12   13   14   14   18   20   22   26   33   35   37   38   41   43 
LCS_GDT     G     126     G     126      3    8   19     3    3    4    8    9   10   12   12   13   14   17   20   23   26   29   35   37   38   43   44 
LCS_GDT     N     127     N     127      3    4   19     3    3    3    4    4    4    6    9   12   14   18   20   22   24   28   31   34   36   39   43 
LCS_GDT     Y     128     Y     128      3    5   17     3    3    4    4    5    5    5    6    9   10   11   13   18   19   22   24   29   33   39   44 
LCS_GDT     Y     129     Y     129      3    5   15     3    3    4    4    5    9   10   12   13   15   19   21   21   22   25   29   34   39   39   44 
LCS_GDT     R     130     R     130      3    7   15     3    3    5    8    9   10   11   12   15   16   19   21   21   22   25   29   34   39   39   44 
LCS_GDT     H     131     H     131      4    7   15     3    3    5    8    9   10   11   12   15   16   19   21   21   22   25   28   31   39   39   42 
LCS_GDT     L     132     L     132      4    9   15     3    3    5    8    9   10   11   12   15   16   19   21   21   22   25   29   34   39   39   42 
LCS_GDT     K     133     K     133      4    9   15     3    4    5    8    9   10   11   12   15   16   19   21   21   22   25   28   31   39   39   42 
LCS_GDT     N     134     N     134      4    9   15     3    4    5    7    9   10   11   12   15   16   19   21   21   22   25   28   34   39   39   42 
LCS_GDT     I     135     I     135      4    9   15     4    4    5    7    8   10   11   12   15   16   19   21   21   22   25   29   34   39   39   45 
LCS_GDT     T     136     T     136      4    9   15     4    4    5    8    8   10   11   12   15   16   19   21   22   28   42   50   55   64   68   87 
LCS_GDT     F     137     F     137      4    9   15     4    4    5    8    8   10   11   12   13   14   22   29   34   35   42   51   59   77   91   95 
LCS_GDT     K     138     K     138      4    9   15     4    4    5    7    8    9   11   12   13   20   24   29   46   53   65   85   88   95   98  103 
LCS_GDT     I     139     I     139      4    9   15     3    4    5    8    8   10   12   15   22   30   38   45   55   61   71   81   88   95   98  103 
LCS_GDT     D     140     D     140      0    9   15     0    2    5    8    8   10   11   16   21   24   32   39   45   56   62   68   78   83   88   93 
LCS_GDT     E     141     E     141      3    4   15     0    3    3    3   10   13   16   18   22   30   37   42   51   60   66   74   82   84   89   94 
LCS_GDT     I     142     I     142      3    4   15     0    3    3    3    4   14   17   21   22   25   34   38   41   51   56   64   68   71   77   91 
LCS_GDT     Y     143     Y     143      3    4   15     0    3    3    3    4    4   17   21   22   24   26   32   40   43   48   58   66   70   74   83 
LCS_AVERAGE  LCS_A:  23.79  (   4.66    9.81   56.91 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     22     32     43     54     66     73     83     89     91     94     97     98    100    102    103    105    105    105 
GDT PERCENT_CA   7.04   9.15  15.49  22.54  30.28  38.03  46.48  51.41  58.45  62.68  64.08  66.20  68.31  69.01  70.42  71.83  72.54  73.94  73.94  73.94
GDT RMS_LOCAL    0.29   0.41   1.16   1.45   1.80   2.20   2.42   2.61   2.98   3.14   3.20   3.33   3.52   3.59   3.82   3.96   4.06   4.23   4.23   4.23
GDT RMS_ALL_CA  19.52  19.09  13.20  13.07  13.16  13.34  13.25  13.29  13.27  13.28  13.27  13.36  13.42  13.43  13.36  13.36  13.36  13.29  13.29  13.29

#      Molecule1      Molecule2       DISTANCE
LGA    I       2      I       2          3.400
LGA    D       3      D       3          2.645
LGA    E       4      E       4          3.750
LGA    K       5      K       5          3.881
LGA    F       6      F       6          1.745
LGA    L       7      L       7          2.587
LGA    I       8      I       8          3.935
LGA    E       9      E       9          2.697
LGA    S      10      S      10          1.296
LGA    N      11      N      11          2.849
LGA    E      12      E      12          2.505
LGA    L      13      L      13          1.354
LGA    V      14      V      14          2.818
LGA    E      15      E      15          3.127
LGA    S      16      S      16          1.694
LGA    S      17      S      17          2.667
LGA    K      18      K      18          5.061
LGA    I      19      I      19          8.003
LGA    V      20      V      20          4.358
LGA    M      21      M      21          4.507
LGA    V      22      V      22          0.754
LGA    G      23      G      23          2.020
LGA    T      24      T      24          2.693
LGA    N      25      N      25          4.668
LGA    G      26      G      26          5.725
LGA    E      27      E      27          9.972
LGA    N      28      N      28         11.021
LGA    G      29      G      29          9.301
LGA    Y      30      Y      30          3.220
LGA    P      31      P      31          4.585
LGA    N      32      N      32          3.626
LGA    I      33      I      33          2.129
LGA    K      34      K      34          1.873
LGA    A      35      A      35          4.633
LGA    M      36      M      36          3.835
LGA    M      37      M      37          3.604
LGA    R      38      R      38          2.355
LGA    L      39      L      39          4.194
LGA    K      40      K      40          1.967
LGA    H      41      H      41          3.252
LGA    D      42      D      42          4.448
LGA    G      43      G      43          8.077
LGA    L      44      L      44          8.167
LGA    K      45      K      45          3.577
LGA    K      46      K      46          1.919
LGA    F      47      F      47          1.484
LGA    W      48      W      48          4.766
LGA    L      49      L      49          3.898
LGA    S      50      S      50          5.998
LGA    T      51      T      51          3.703
LGA    N      52      N      52          3.792
LGA    T      53      T      53          5.073
LGA    S      54      S      54          5.607
LGA    T      55      T      55          3.331
LGA    R      56      R      56          2.936
LGA    M      57      M      57          1.312
LGA    V      58      V      58          1.717
LGA    E      59      E      59          2.683
LGA    R      60      R      60          2.125
LGA    L      61      L      61          0.922
LGA    K      62      K      62          1.823
LGA    K      63      K      63          2.702
LGA    N      64      N      64          2.187
LGA    N      65      N      65          1.936
LGA    K      66      K      66          3.541
LGA    I      67      I      67          1.831
LGA    C      68      C      68          1.854
LGA    L      69      L      69          2.772
LGA    Y      70      Y      70          1.494
LGA    F      71      F      71          1.649
LGA    V      72      V      72          1.792
LGA    D      73      D      73          2.898
LGA    D      74      D      74          3.609
LGA    N      75      N      75          5.025
LGA    K      76      K      76          4.721
LGA    F      77      F      77          4.812
LGA    A      78      A      78          2.029
LGA    G      79      G      79          2.444
LGA    L      80      L      80          2.696
LGA    M      81      M      81          3.210
LGA    L      82      L      82          3.302
LGA    V      83      V      83          6.552
LGA    G      84      G      84          5.753
LGA    T      85      T      85          6.267
LGA    I      86      I      86          4.755
LGA    E      87      E      87          1.712
LGA    I      88      I      88          1.549
LGA    L      89      L      89          2.286
LGA    H      90      H      90          3.321
LGA    D      91      D      91          2.747
LGA    R      92      R      92          2.554
LGA    A      93      A      93          1.167
LGA    S      94      S      94          1.172
LGA    K      95      K      95          1.914
LGA    E      96      E      96          2.139
LGA    M      97      M      97          2.218
LGA    L      98      L      98          3.028
LGA    W      99      W      99          3.330
LGA    T     100      T     100          4.454
LGA    D     101      D     101          5.581
LGA    G     102      G     102         10.565
LGA    C     103      C     103          9.721
LGA    E     104      E     104         17.083
LGA    I     105      I     105         19.386
LGA    Y     106      Y     106         19.738
LGA    Y     107      Y     107         22.551
LGA    P     108      P     108         29.954
LGA    L     109      L     109         32.925
LGA    G     110      G     110         33.086
LGA    I     111      I     111         32.825
LGA    D     112      D     112         34.444
LGA    D     113      D     113         34.086
LGA    P     114      P     114         29.602
LGA    D     115      D     115         24.404
LGA    Y     116      Y     116         20.786
LGA    T     117      T     117         14.075
LGA    A     118      A     118          9.350
LGA    L     119      L     119          3.026
LGA    C     120      C     120          7.668
LGA    F     121      F     121         12.187
LGA    T     122      T     122         19.300
LGA    A     123      A     123         21.422
LGA    E     124      E     124         28.220
LGA    W     125      W     125         26.337
LGA    G     126      G     126         23.903
LGA    N     127      N     127         25.916
LGA    Y     128      Y     128         23.107
LGA    Y     129      Y     129         24.188
LGA    R     130      R     130         26.012
LGA    H     131      H     131         32.202
LGA    L     132      L     132         30.701
LGA    K     133      K     133         31.016
LGA    N     134      N     134         26.866
LGA    I     135      I     135         24.936
LGA    T     136      T     136         19.291
LGA    F     137      F     137         18.143
LGA    K     138      K     138         15.668
LGA    I     139      I     139         16.426
LGA    D     140      D     140         20.991
LGA    E     141      E     141         21.616
LGA    I     142      I     142         23.123
LGA    Y     143      Y     143         25.583

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  145  142    4.0     73    2.61    38.732    34.663     2.697

LGA_LOCAL      RMSD =  2.607  Number of atoms =   73  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.326  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 12.079  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.624006 * X  +  -0.531748 * Y  +   0.572591 * Z  +  -8.379609
  Y_new =  -0.545359 * X  +  -0.821144 * Y  +  -0.168242 * Z  +  -6.088942
  Z_new =   0.559643 * X  +  -0.207284 * Y  +  -0.802392 * Z  +  14.900590 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.888788    0.252805  [ DEG:  -165.5153     14.4847 ]
  Theta =  -0.593955   -2.547638  [ DEG:   -34.0311   -145.9689 ]
  Phi   =  -0.718243    2.423349  [ DEG:   -41.1523    138.8477 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0380TS393_4                                  
REMARK     2: T0380.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0380TS393_4.T0380.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  145  142   4.0   73   2.61  34.663    12.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0380TS393_4
PFRMAT TS
TARGET T0380
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1     -22.972  -1.027   1.300  1.00 25.00           C
ATOM      2  CA  ILE     2     -24.074  -0.048   4.866  1.00 25.00           C
ATOM      3  CA  ASP     3     -24.653   3.661   4.550  1.00 25.00           C
ATOM      4  CA  GLU     4     -23.426   7.134   3.592  1.00 25.00           C
ATOM      5  CA  LYS     5     -22.408   8.372   7.070  1.00 25.00           C
ATOM      6  CA  PHE     6     -21.070   4.892   7.945  1.00 25.00           C
ATOM      7  CA  LEU     7     -19.070   4.813   4.679  1.00 25.00           C
ATOM      8  CA  ILE     8     -17.620   8.272   5.456  1.00 25.00           C
ATOM      9  CA  GLU     9     -16.642   7.100   8.967  1.00 25.00           C
ATOM     10  CA  SER    10     -14.949   4.000   7.489  1.00 25.00           C
ATOM     11  CA  ASN    11     -13.033   6.199   5.007  1.00 25.00           C
ATOM     12  CA  GLU    12     -11.909   8.487   7.865  1.00 25.00           C
ATOM     13  CA  LEU    13     -10.733   5.445   9.871  1.00 25.00           C
ATOM     14  CA  VAL    14      -8.783   4.164   6.833  1.00 25.00           C
ATOM     15  CA  GLU    15      -7.154   7.602   6.399  1.00 25.00           C
ATOM     16  CA  SER    16      -5.696   7.986   9.893  1.00 25.00           C
ATOM     17  CA  SER    17      -6.458   6.015  12.997  1.00 25.00           C
ATOM     18  CA  LYS    18      -7.246   2.431  11.843  1.00 25.00           C
ATOM     19  CA  ILE    19      -9.753   0.141  10.072  1.00 25.00           C
ATOM     20  CA  VAL    20      -9.295  -2.462  12.867  1.00 25.00           C
ATOM     21  CA  MET    21      -8.909  -4.803  15.805  1.00 25.00           C
ATOM     22  CA  VAL    22      -8.047  -6.197  19.299  1.00 25.00           C
ATOM     23  CA  GLY    23      -8.713  -8.260  22.465  1.00 25.00           C
ATOM     24  CA  THR    24      -7.017 -11.561  21.948  1.00 25.00           C
ATOM     25  CA  ASN    25      -6.241 -12.014  25.689  1.00 25.00           C
ATOM     26  CA  GLY    26      -4.863  -8.571  26.528  1.00 25.00           C
ATOM     27  CA  GLU    27      -4.488  -5.917  29.228  1.00 25.00           C
ATOM     28  CA  ASN    28      -5.142  -5.943  32.917  1.00 25.00           C
ATOM     29  CA  GLY    29      -7.299  -8.116  35.144  1.00 25.00           C
ATOM     30  CA  TYR    30     -10.583  -9.561  33.799  1.00 25.00           C
ATOM     31  CA  PRO    31     -11.544  -6.643  31.526  1.00 25.00           C
ATOM     32  CA  ASN    32      -9.407  -5.054  28.730  1.00 25.00           C
ATOM     33  CA  ILE    33      -9.035  -3.966  25.096  1.00 25.00           C
ATOM     34  CA  LYS    34      -5.711  -4.027  23.244  1.00 25.00           C
ATOM     35  CA  ALA    35      -7.354  -1.418  21.052  1.00 25.00           C
ATOM     36  CA  MET    36      -5.044  -2.300  18.143  1.00 25.00           C
ATOM     37  CA  MET    37      -3.075  -0.824  15.262  1.00 25.00           C
ATOM     38  CA  ARG    38      -2.279  -0.936  11.527  1.00 25.00           C
ATOM     39  CA  LEU    39      -4.395  -2.915   8.989  1.00 25.00           C
ATOM     40  CA  LYS    40      -5.238  -3.167   5.252  1.00 25.00           C
ATOM     41  CA  HIS    41      -6.253  -3.358   1.580  1.00 25.00           C
ATOM     42  CA  ASP    42      -8.504  -2.931  -1.505  1.00 25.00           C
ATOM     43  CA  GLY    43      -8.440  -6.547  -2.686  1.00 25.00           C
ATOM     44  CA  LEU    44     -11.824  -6.912  -0.973  1.00 25.00           C
ATOM     45  CA  LYS    45     -12.215  -8.416   2.468  1.00 25.00           C
ATOM     46  CA  LYS    46     -11.166  -6.494   5.530  1.00 25.00           C
ATOM     47  CA  PHE    47      -8.962  -6.443   8.612  1.00 25.00           C
ATOM     48  CA  TRP    48      -6.707  -6.576  11.631  1.00 25.00           C
ATOM     49  CA  LEU    49      -4.077  -5.642  14.275  1.00 25.00           C
ATOM     50  CA  SER    50      -2.520  -6.929  17.539  1.00 25.00           C
ATOM     51  CA  THR    51      -0.435 -10.085  17.946  1.00 25.00           C
ATOM     52  CA  ASN    52       2.727 -11.787  16.608  1.00 25.00           C
ATOM     53  CA  THR    53       2.965 -15.031  14.624  1.00 25.00           C
ATOM     54  CA  SER    54       4.317 -16.841  17.649  1.00 25.00           C
ATOM     55  CA  THR    55       4.501 -14.878  20.960  1.00 25.00           C
ATOM     56  CA  ARG    56       2.919 -16.967  23.709  1.00 25.00           C
ATOM     57  CA  MET    57      -0.079 -14.640  23.186  1.00 25.00           C
ATOM     58  CA  VAL    58      -0.226 -15.621  19.487  1.00 25.00           C
ATOM     59  CA  GLU    59      -0.127 -19.328  20.440  1.00 25.00           C
ATOM     60  CA  ARG    60      -2.964 -18.783  22.953  1.00 25.00           C
ATOM     61  CA  LEU    61      -5.028 -16.987  20.273  1.00 25.00           C
ATOM     62  CA  LYS    62      -4.423 -19.879  17.836  1.00 25.00           C
ATOM     63  CA  LYS    63      -5.520 -22.393  20.508  1.00 25.00           C
ATOM     64  CA  ASN    64      -8.765 -20.401  20.488  1.00 25.00           C
ATOM     65  CA  ASN    65      -9.425 -18.459  17.224  1.00 25.00           C
ATOM     66  CA  LYS    66      -9.694 -15.101  19.007  1.00 25.00           C
ATOM     67  CA  ILE    67     -11.643 -11.998  19.960  1.00 25.00           C
ATOM     68  CA  CYS    68     -12.967  -8.510  19.295  1.00 25.00           C
ATOM     69  CA  LEU    69     -13.809  -5.828  16.751  1.00 25.00           C
ATOM     70  CA  TYR    70     -12.995  -2.148  17.060  1.00 25.00           C
ATOM     71  CA  PHE    71     -10.881   0.917  16.233  1.00 25.00           C
ATOM     72  CA  VAL    72     -10.396   4.506  17.302  1.00 25.00           C
ATOM     73  CA  ASP    73     -11.722   6.905  14.594  1.00 25.00           C
ATOM     74  CA  ASP    74     -12.647  10.207  16.209  1.00 25.00           C
ATOM     75  CA  ASN    75     -12.246  12.608  13.237  1.00 25.00           C
ATOM     76  CA  LYS    76     -15.778  12.816  11.734  1.00 25.00           C
ATOM     77  CA  PHE    77     -17.436  10.982  14.582  1.00 25.00           C
ATOM     78  CA  ALA    78     -17.438   7.166  14.927  1.00 25.00           C
ATOM     79  CA  GLY    79     -15.769   3.883  14.120  1.00 25.00           C
ATOM     80  CA  LEU    80     -14.688   0.679  12.414  1.00 25.00           C
ATOM     81  CA  MET    81     -15.627  -2.995  12.883  1.00 25.00           C
ATOM     82  CA  LEU    82     -13.678  -6.051  11.627  1.00 25.00           C
ATOM     83  CA  VAL    83     -13.043  -9.297   9.698  1.00 25.00           C
ATOM     84  CA  GLY    84     -12.635 -12.941   8.669  1.00 25.00           C
ATOM     85  CA  THR    85     -10.403 -16.008   8.225  1.00 25.00           C
ATOM     86  CA  ILE    86      -7.059 -16.958   9.905  1.00 25.00           C
ATOM     87  CA  GLU    87      -4.777 -17.185  12.961  1.00 25.00           C
ATOM     88  CA  ILE    88      -1.612 -15.122  12.382  1.00 25.00           C
ATOM     89  CA  LEU    89      -2.243 -15.240   8.632  1.00 25.00           C
ATOM     90  CA  HIS    90       0.075 -18.027   7.480  1.00 25.00           C
ATOM     91  CA  ASP    91       1.629 -20.497   5.087  1.00 25.00           C
ATOM     92  CA  ARG    92       4.949 -18.732   5.033  1.00 25.00           C
ATOM     93  CA  ALA    93       4.059 -16.595   1.983  1.00 25.00           C
ATOM     94  CA  SER    94       1.513 -14.635   4.067  1.00 25.00           C
ATOM     95  CA  LYS    95       4.147 -14.061   6.788  1.00 25.00           C
ATOM     96  CA  GLU    96       6.637 -12.829   4.152  1.00 25.00           C
ATOM     97  CA  MET    97       3.998 -10.439   2.741  1.00 25.00           C
ATOM     98  CA  LEU    98       3.283  -9.110   6.261  1.00 25.00           C
ATOM     99  CA  TRP    99       7.031  -8.570   6.844  1.00 25.00           C
ATOM    100  CA  THR   100       7.302  -6.695   3.515  1.00 25.00           C
ATOM    101  CA  ASP   101       4.320  -4.495   4.483  1.00 25.00           C
ATOM    102  CA  GLY   102       0.624  -5.389   3.873  1.00 25.00           C
ATOM    103  CA  CYS   103      -1.151  -6.674   6.930  1.00 25.00           C
ATOM    104  CA  GLU   104      -4.369  -8.381   5.845  1.00 25.00           C
ATOM    105  CA  ILE   105      -4.937 -10.552   8.935  1.00 25.00           C
ATOM    106  CA  TYR   106      -7.982 -11.380  10.935  1.00 25.00           C
ATOM    107  CA  TYR   107      -9.968 -14.009  12.787  1.00 25.00           C
ATOM    108  CA  PRO   108     -13.069 -16.159  12.543  1.00 25.00           C
ATOM    109  CA  LEU   109     -16.055 -17.925  10.909  1.00 25.00           C
ATOM    110  CA  GLY   110     -18.833 -17.557   8.356  1.00 25.00           C
ATOM    111  CA  ILE   111     -21.465 -17.899  11.081  1.00 25.00           C
ATOM    112  CA  ASP   112     -21.345 -18.352  14.801  1.00 25.00           C
ATOM    113  CA  ASP   113     -21.573 -14.606  14.927  1.00 25.00           C
ATOM    114  CA  PRO   114     -18.515 -12.445  14.275  1.00 25.00           C
ATOM    115  CA  ASP   115     -15.481 -13.226  16.428  1.00 25.00           C
ATOM    116  CA  TYR   116     -13.844 -10.338  14.549  1.00 25.00           C
ATOM    117  CA  THR   117     -10.215  -9.793  15.308  1.00 25.00           C
ATOM    118  CA  ALA   118      -6.508  -9.823  16.113  1.00 25.00           C
ATOM    119  CA  LEU   119      -3.576 -10.627  13.765  1.00 25.00           C
ATOM    120  CA  CYS   120      -0.420  -8.551  13.037  1.00 25.00           C
ATOM    121  CA  PHE   121       0.973  -5.263  14.342  1.00 25.00           C
ATOM    122  CA  THR   122       2.921  -2.410  15.926  1.00 25.00           C
ATOM    123  CA  ALA   123       1.860   0.949  17.285  1.00 25.00           C
ATOM    124  CA  GLU   124       4.401   1.956  19.917  1.00 25.00           C
ATOM    125  CA  TRP   125       1.263   2.784  21.899  1.00 25.00           C
ATOM    126  CA  GLY   126      -0.044   0.901  24.918  1.00 25.00           C
ATOM    127  CA  ASN   127       2.890  -1.337  24.035  1.00 25.00           C
ATOM    128  CA  TYR   128       0.535  -2.578  21.282  1.00 25.00           C
ATOM    129  CA  TYR   129      -0.157  -5.771  23.279  1.00 25.00           C
ATOM    130  CA  ARG   130      -0.907  -3.686  26.403  1.00 25.00           C
ATOM    131  CA  HIS   131       1.571  -5.715  28.536  1.00 25.00           C
ATOM    132  CA  LEU   132      -0.427  -8.921  28.974  1.00 25.00           C
ATOM    133  CA  LYS   133      -3.106 -10.259  31.336  1.00 25.00           C
ATOM    134  CA  ASN   134      -6.814 -10.692  30.710  1.00 25.00           C
ATOM    135  CA  ILE   135     -10.053 -10.473  28.676  1.00 25.00           C
ATOM    136  CA  THR   136     -13.182  -9.201  26.927  1.00 25.00           C
ATOM    137  CA  PHE   137     -13.325  -6.787  24.004  1.00 25.00           C
ATOM    138  CA  LYS   138     -15.265  -4.570  21.698  1.00 25.00           C
ATOM    139  CA  ILE   139     -18.483  -2.608  22.099  1.00 25.00           C
ATOM    140  CA  ASP   140     -21.811  -1.290  23.273  1.00 25.00           C
ATOM    141  CA  GLU   141     -25.232  -0.048  24.577  1.00 25.00           C
ATOM    142  CA  ILE   142     -28.768   0.367  25.821  1.00 25.00           C
ATOM    143  CA  TYR   143     -31.637  -0.688  23.651  1.00 25.00           C
ATOM    144  CA  ASN   144     -34.252   1.879  22.475  1.00 25.00           C
ATOM    145  CA  TYR   145     -35.347   4.493  19.992  1.00 25.00           C
TER
END
