
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  119 (  119),  selected  119 , name T0382TS168_4-D1
# Molecule2: number of CA atoms  119 (  920),  selected  119 , name T0382_D1.pdb
# PARAMETERS: T0382TS168_4-D1.T0382_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        81 - 118         4.74    18.77
  LONGEST_CONTINUOUS_SEGMENT:    38        82 - 119         4.87    18.56
  LCS_AVERAGE:     26.19

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          1.99    26.45
  LCS_AVERAGE:     12.28

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    26.88
  LCS_AVERAGE:      9.27

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  119
LCS_GDT     L       4     L       4      4    7   15     3   15   17   19   21   23   25   25   26   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     D       5     D       5      4    7   22     3    4    4    6    7    7   21   24   26   28   30   32   34   37   40   42   44   46   47   49 
LCS_GDT     L       6     L       6      4    7   22     4    4    5    6    7    8   20   21   24   25   28   31   34   36   38   41   44   46   47   49 
LCS_GDT     H       7     H       7      4    7   22     4    4    5    6   10   13   19   21   24   25   28   31   34   36   38   41   44   46   47   49 
LCS_GDT     Q       8     Q       8      4    7   22     4    4    5    6    7   10   11   12   24   25   27   31   34   36   37   41   44   45   47   49 
LCS_GDT     M       9     M       9      4   13   22     4    4    5    6    8   11   13   16   20   24   26   26   27   29   37   39   41   43   45   49 
LCS_GDT     T      10     T      10     12   13   22    12   12   13   14   14   14   14   14   15   17   22   24   25   29   32   33   41   42   44   48 
LCS_GDT     T      11     T      11     12   13   22    12   12   13   14   14   14   14   14   16   18   21   28   32   34   37   39   41   44   45   49 
LCS_GDT     Q      12     Q      12     12   13   22    12   12   13   14   14   14   16   18   19   20   22   25   27   32   37   39   41   44   45   48 
LCS_GDT     D      13     D      13     12   13   22    12   12   13   14   14   14   14   18   19   20   22   24   26   27   28   32   35   42   44   48 
LCS_GDT     L      14     L      14     12   13   22    12   12   13   14   14   14   14   14   16   18   20   22   26   27   35   39   41   44   45   48 
LCS_GDT     V      15     V      15     12   13   22    12   12   13   14   14   14   14   14   16   18   22   24   27   28   31   34   35   44   45   48 
LCS_GDT     A      16     A      16     12   13   22    12   12   13   14   14   14   14   14   16   18   22   24   27   28   31   34   35   38   41   43 
LCS_GDT     L      17     L      17     12   13   22    12   12   13   14   14   14   14   14   16   18   22   24   27   28   31   34   35   38   41   43 
LCS_GDT     F      18     F      18     12   13   22    12   12   13   14   14   14   14   14   16   18   22   24   27   28   31   34   35   38   41   43 
LCS_GDT     A      19     A      19     12   13   22    12   12   13   14   14   14   14   14   16   18   22   24   27   28   31   34   35   38   42   46 
LCS_GDT     K      20     K      20     12   13   22    12   12   13   14   14   14   14   14   16   18   20   24   27   28   31   34   35   38   42   46 
LCS_GDT     V      21     V      21     12   13   22    12   12   13   14   14   14   14   14   15   18   22   24   27   28   31   34   35   38   42   46 
LCS_GDT     T      22     T      22      3   13   22     3    3    5    8   10   12   13   14   16   18   22   24   27   28   31   34   35   38   42   46 
LCS_GDT     V      23     V      23     10   11   22    10   10   10   10   10   10   11   12   15   18   22   24   27   28   31   32   35   38   40   43 
LCS_GDT     E      24     E      24     10   11   22    10   10   10   10   10   10   11   12   16   18   22   24   27   28   31   34   35   38   41   43 
LCS_GDT     Q      25     Q      25     10   11   22    10   10   10   10   10   10   11   12   16   18   22   24   27   28   31   34   35   38   42   46 
LCS_GDT     D      26     D      26     10   11   22    10   10   10   10   10   11   12   14   15   16   22   24   27   28   31   37   41   44   46   48 
LCS_GDT     D      27     D      27     10   11   28    10   10   10   10   10   10   11   11   13   16   17   23   27   30   36   39   41   44   46   48 
LCS_GDT     A      28     A      28     10   11   28    10   10   10   10   10   11   12   14   15   16   18   25   28   32   36   39   41   44   46   48 
LCS_GDT     L      29     L      29     10   11   28    10   10   10   10   10   10   11   11   14   20   25   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      30     L      30     10   11   28    10   10   10   10   10   12   16   21   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     G      31     G      31     10   11   28    10   10   10   10   10   10   11   13   21   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   15   16   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     Q      33     Q      33     20   22   28    11   20   20   20   20   20   20   22   23   26   26   28   29   32   32   39   40   44   46   48 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   35   39   41   44   46   48 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   33   38   39   41   44   46   48 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   33   38   39   41   44   46   48 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   33   39   40   44   46   48 
LCS_GDT     K      52     K      52     20   22   28    19   20   20   20   20   20   20   22   23   26   26   27   29   32   32   39   40   44   45   47 
LCS_GDT     A      53     A      53      3   22   34     3    3    4    7    7   15   18   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      54     R      54      3    5   34     0    3    4    7    8    9   13   19   22   25   29   32   34   35   38   39   41   44   46   48 
LCS_GDT     D      55     D      55      3    5   34     3    3    5    7    8   11   14   19   22   26   30   32   34   35   38   39   41   44   46   48 
LCS_GDT     G      56     G      56      3    5   34     3    3    4    7    8    9   11   14   16   20   30   32   35   37   40   43   43   44   46   48 
LCS_GDT     D      57     D      57      3    7   34     3    3    3    6    8   11   14   19   22   26   30   32   35   38   41   43   43   44   46   48 
LCS_GDT     Q      58     Q      58      6   10   34     3    4    6    8    9   11   15   19   26   28   30   32   35   40   41   43   44   46   47   49 
LCS_GDT     R      59     R      59      6   10   34     3    5    8   12   17   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     T      60     T      60      6   10   34     4    5    8    8    9   11   13   19   26   27   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     A      61     A      61      6   10   34     4    5    8   14   17   20   24   25   27   28   30   32   35   40   41   43   44   46   47   49 
LCS_GDT     L      62     L      62      6   10   34     4    5    8    8   11   13   15   19   22   26   30   32   34   37   40   42   44   46   47   49 
LCS_GDT     L      63     L      63      6   10   34     4    5    8    8    9   12   16   19   22   26   30   32   34   35   36   39   41   44   46   49 
LCS_GDT     S      64     S      64      6   10   34     4    5    8   10   15   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     L      65     L      65      6   10   34     4    5    8    8   10   16   18   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     F      66     F      66      6   12   34     4    5    8   10   15   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     E      67     E      67      5   12   34     4    5   13   14   15   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     Y      68     Y      68      5   12   34     4    5    5    8   11   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     P      69     P      69      5   17   34     3    5    5    8   11   15   20   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     N      70     N      70      3   17   34     3    4    7   12   16   17   21   22   23   26   30   32   34   35   36   37   39   44   46   48 
LCS_GDT     M      71     M      71     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   39   44   46   48 
LCS_GDT     Q      72     Q      72     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   39   39 
LCS_GDT     V      73     V      73     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   39   41 
LCS_GDT     R      74     R      74     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   40   44   46   48 
LCS_GDT     L      75     L      75     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   43   46   48 
LCS_GDT     Q      76     Q      76     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   42   42 
LCS_GDT     A      77     A      77     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   45   48 
LCS_GDT     A      78     A      78     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   43   46   48 
LCS_GDT     K      79     K      79     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   42   46 
LCS_GDT     L      80     L      80     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   40   42   46 
LCS_GDT     T      81     T      81     13   17   38     8   12   12   14   16   17   21   22   23   26   30   32   34   35   40   42   43   45   46   49 
LCS_GDT     L      82     L      82     13   17   38     7   12   12   14   16   17   21   22   26   27   30   32   35   40   41   43   44   46   47   49 
LCS_GDT     A      83     A      83     13   17   38     4    5    8   14   16   20   23   25   27   28   30   32   35   40   41   43   44   46   47   49 
LCS_GDT     V      84     V      84      5   20   38     4    5   11   14   16   17   21   25   27   28   30   32   35   40   41   43   44   46   47   49 
LCS_GDT     A      85     A      85     17   20   38     5   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     P      86     P      86     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     V      87     V      87     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     K      88     K      88     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     A      89     A      89     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     R      90     R      90     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     E      91     E      91     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     Q      92     Q      92     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     L      93     L      93     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     E      94     E      94     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     A      95     A      95     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     I      96     I      96     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     V      97     V      97     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     S      98     S      98     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     S      99     S      99     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     K     100     K     100     17   20   38    15   16   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     W     101     W     101     17   20   38     4    8   12   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     F     102     F     102      3   20   38     3    3    3    5    9   20   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     P     103     P     103      3   20   38     3   11   17   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     Q     104     Q     104      3   20   38     3    3    3    7    7    8    9   10   18   25   28   33   35   40   41   43   44   46   47   49 
LCS_GDT     A     105     A     105      4    4   38     3    3    7    7    7    8   10   13   16   21   26   30   35   38   41   43   44   46   47   49 
LCS_GDT     G     106     G     106      4    4   38     3    3    4    5    5    8   10   13   16   23   26   31   35   40   41   43   44   46   47   49 
LCS_GDT     D     107     D     107      4    4   38     3    3    4    5    5    5    7   10   14   25   28   33   35   40   41   43   44   46   47   49 
LCS_GDT     A     108     A     108      4    9   38     0    3    4    5    8    9    9   11   12   19   27   33   35   40   41   43   44   46   47   49 
LCS_GDT     G     109     G     109      7    9   38     7    7    7   10   11   13   15   16   20   22   26   33   35   40   41   43   44   46   47   49 
LCS_GDT     M     110     M     110      7    9   38     7    7    7    8    8    9   11   17   20   24   26   32   35   40   41   43   44   46   47   49 
LCS_GDT     C     111     C     111      7    9   38     7    7    7    8   15   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     L     112     L     112      7    9   38     7    7    7   10   11   18   21   24   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     D     113     D     113      7    9   38     7    7    7    8    8    9   10   13   21   26   27   33   35   40   41   43   44   46   46   49 
LCS_GDT     L     114     L     114      7    9   38     7    7    7    8    8    9   10   13   23   26   28   33   35   40   41   43   44   46   47   49 
LCS_GDT     L     115     L     115      7    9   38     7    7    9   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     D     116     D     116      0    9   38     1    4    9   13   20   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     D     117     D     117      3    6   38     4    8   12   19   21   23   25   25   27   28   30   33   35   40   41   43   44   46   47   49 
LCS_GDT     G     118     G     118      3    6   38     3    3    3    4   15   17   17   21   24   27   30   31   34   37   40   42   44   46   47   49 
LCS_GDT     T     119     T     119      3    6   38     3    3    3   10   15   17   17   19   21   25   27   31   34   36   38   40   44   45   47   49 
LCS_GDT     F     120     F     120      3    6   16     3    3    3    4    5    6   13   16   17   20   21   22   26   29   33   39   41   44   45   48 
LCS_GDT     K     121     K     121      3    6   16     3    3    3    4    5    6    7    9   12   13   15   15   18   18   19   22   24   26   29   30 
LCS_GDT     P     122     P     122      3    3   16     3    3    3    3    4    6    7   10   12   13   15   15   16   17   19   22   24   26   29   30 
LCS_AVERAGE  LCS_A:  15.91  (   9.27   12.28   26.19 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     21     23     25     25     27     28     30     33     35     40     41     43     44     46     47     49 
GDT PERCENT_CA  15.97  16.81  16.81  16.81  17.65  19.33  21.01  21.01  22.69  23.53  25.21  27.73  29.41  33.61  34.45  36.13  36.97  38.66  39.50  41.18
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   1.30   1.62   1.90   1.90   2.49   2.53   2.84   3.79   3.72   4.39   4.49   4.82   4.88   5.28   5.39   5.67
GDT RMS_ALL_CA  26.93  26.88  26.88  26.88  19.71  19.76  19.64  19.64  18.98  19.23  19.41  19.82  19.19  19.33  19.32  19.71  18.99  18.96  18.86  18.76

#      Molecule1      Molecule2       DISTANCE
LGA    L       4      L       4          2.495
LGA    D       5      D       5          5.745
LGA    L       6      L       6         10.694
LGA    H       7      H       7         11.362
LGA    Q       8      Q       8         12.244
LGA    M       9      M       9         15.297
LGA    T      10      T      10         20.284
LGA    T      11      T      11         18.025
LGA    Q      12      Q      12         19.287
LGA    D      13      D      13         22.377
LGA    L      14      L      14         21.461
LGA    V      15      V      15         21.846
LGA    A      16      A      16         24.957
LGA    L      17      L      17         27.189
LGA    F      18      F      18         26.748
LGA    A      19      A      19         28.970
LGA    K      20      K      20         32.604
LGA    V      21      V      21         33.869
LGA    T      22      T      22         33.133
LGA    V      23      V      23         36.685
LGA    E      24      E      24         34.844
LGA    Q      25      Q      25         32.115
LGA    D      26      D      26         33.407
LGA    D      27      D      27         33.534
LGA    A      28      A      28         30.808
LGA    L      29      L      29         30.828
LGA    L      30      L      30         32.776
LGA    G      31      G      31         31.195
LGA    N      32      N      32         30.226
LGA    Q      33      Q      33         30.655
LGA    I      34      I      34         24.853
LGA    S      35      S      35         23.337
LGA    R      36      R      36         25.377
LGA    F      37      F      37         21.514
LGA    N      38      N      38         17.085
LGA    R      39      R      39         19.691
LGA    L      40      L      40         19.247
LGA    F      41      F      41         14.536
LGA    G      42      G      42         15.341
LGA    V      43      V      43         18.397
LGA    M      44      M      44         14.678
LGA    A      45      A      45         14.567
LGA    E      46      E      46         19.249
LGA    I      47      I      47         18.482
LGA    A      48      A      48         16.679
LGA    D      49      D      49         21.803
LGA    E      50      E      50         24.812
LGA    L      51      L      51         22.040
LGA    K      52      K      52         24.941
LGA    A      53      A      53         24.883
LGA    R      54      R      54         20.350
LGA    D      55      D      55         17.563
LGA    G      56      G      56         12.462
LGA    D      57      D      57         11.113
LGA    Q      58      Q      58          5.666
LGA    R      59      R      59          3.508
LGA    T      60      T      60          5.788
LGA    A      61      A      61          5.235
LGA    L      62      L      62          8.931
LGA    L      63      L      63         12.725
LGA    S      64      S      64         15.051
LGA    L      65      L      65         18.199
LGA    F      66      F      66         21.173
LGA    E      67      E      67         26.239
LGA    Y      68      Y      68         27.001
LGA    P      69      P      69         34.614
LGA    N      70      N      70         37.737
LGA    M      71      M      71         38.665
LGA    Q      72      Q      72         36.936
LGA    V      73      V      73         33.784
LGA    R      74      R      74         29.506
LGA    L      75      L      75         27.785
LGA    Q      76      Q      76         26.230
LGA    A      77      A      77         22.144
LGA    A      78      A      78         18.220
LGA    K      79      K      79         17.146
LGA    L      80      L      80         16.468
LGA    T      81      T      81         10.701
LGA    L      82      L      82          7.143
LGA    A      83      A      83          6.243
LGA    V      84      V      84          6.919
LGA    A      85      A      85          0.663
LGA    P      86      P      86          1.346
LGA    V      87      V      87          1.668
LGA    K      88      K      88          0.974
LGA    A      89      A      89          0.869
LGA    R      90      R      90          1.098
LGA    E      91      E      91          0.758
LGA    Q      92      Q      92          0.343
LGA    L      93      L      93          0.906
LGA    E      94      E      94          0.856
LGA    A      95      A      95          0.497
LGA    I      96      I      96          1.150
LGA    V      97      V      97          1.343
LGA    S      98      S      98          0.948
LGA    S      99      S      99          1.305
LGA    K     100      K     100          1.425
LGA    W     101      W     101          2.188
LGA    F     102      F     102          3.982
LGA    P     103      P     103          1.685
LGA    Q     104      Q     104          7.117
LGA    A     105      A     105          9.591
LGA    G     106      G     106          8.611
LGA    D     107      D     107          7.731
LGA    A     108      A     108          8.656
LGA    G     109      G     109          9.473
LGA    M     110      M     110          9.403
LGA    C     111      C     111          3.921
LGA    L     112      L     112          5.419
LGA    D     113      D     113          9.725
LGA    L     114      L     114          8.005
LGA    L     115      L     115          2.579
LGA    D     116      D     116          2.736
LGA    D     117      D     117          3.129
LGA    G     118      G     118          7.861
LGA    T     119      T     119         10.148
LGA    F     120      F     120         14.298
LGA    K     121      K     121         18.684
LGA    P     122      P     122         22.767

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  119  119    4.0     25    1.90    22.689    19.751     1.249

LGA_LOCAL      RMSD =  1.902  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.621  Number of atoms =  119 
Std_ALL_ATOMS  RMSD = 16.108  (standard rmsd on all 119 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.777419 * X  +   0.370928 * Y  +  -0.507969 * Z  + -13.298407
  Y_new =   0.622075 * X  +   0.334066 * Y  +  -0.708112 * Z  +  53.795094
  Z_new =  -0.092963 * X  +  -0.866494 * Y  +  -0.490455 * Z  +  -1.530753 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.085857    1.055736  [ DEG:  -119.5108     60.4892 ]
  Theta =   0.093098    3.048495  [ DEG:     5.3341    174.6659 ]
  Phi   =   2.466742   -0.674851  [ DEG:   141.3339    -38.6661 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS168_4-D1                               
REMARK     2: T0382_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS168_4-D1.T0382_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  119  119   4.0   25   1.90  19.751    16.11
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS168_4-D1
PFRMAT TS
TARGET T0382
MODEL 4
PARENT N/A
ATOM      4  CA  LEU     4      -1.189  37.272  -4.860  1.00 25.00           C
ATOM      5  CA  ASP     5      -2.232  40.529  -6.377  1.00 25.00           C
ATOM      6  CA  LEU     6       0.286  42.982  -4.855  1.00 25.00           C
ATOM      7  CA  HIS     7       1.616  43.821  -8.348  1.00 25.00           C
ATOM      8  CA  GLN     8      -1.956  44.419  -9.592  1.00 25.00           C
ATOM      9  CA  MET     9      -2.639  46.715  -6.603  1.00 25.00           C
ATOM     10  CA  THR    10       0.578  48.662  -7.333  1.00 25.00           C
ATOM     11  CA  THR    11      -0.450  49.031 -11.004  1.00 25.00           C
ATOM     12  CA  GLN    12      -3.902  50.298  -9.935  1.00 25.00           C
ATOM     13  CA  ASP    13      -2.269  52.831  -7.571  1.00 25.00           C
ATOM     14  CA  LEU    14       0.024  54.026 -10.397  1.00 25.00           C
ATOM     15  CA  VAL    15      -2.999  54.421 -12.716  1.00 25.00           C
ATOM     16  CA  ALA    16      -4.834  56.430 -10.021  1.00 25.00           C
ATOM     17  CA  LEU    17      -1.767  58.680  -9.575  1.00 25.00           C
ATOM     18  CA  PHE    18      -1.590  59.231 -13.360  1.00 25.00           C
ATOM     19  CA  ALA    19      -5.312  60.132 -13.429  1.00 25.00           C
ATOM     20  CA  LYS    20      -4.789  62.609 -10.555  1.00 25.00           C
ATOM     21  CA  VAL    21      -1.841  64.190 -12.420  1.00 25.00           C
ATOM     22  CA  THR    22       1.245  63.850 -10.311  1.00 25.00           C
ATOM     23  CA  VAL    23       3.778  63.396  -7.533  1.00 25.00           C
ATOM     24  CA  GLU    24       3.396  62.647  -3.797  1.00 25.00           C
ATOM     25  CA  GLN    25       0.075  64.551  -3.728  1.00 25.00           C
ATOM     26  CA  ASP    26      -1.150  62.575  -6.771  1.00 25.00           C
ATOM     27  CA  ASP    27      -0.162  59.291  -5.065  1.00 25.00           C
ATOM     28  CA  ALA    28      -2.040  60.343  -1.897  1.00 25.00           C
ATOM     29  CA  LEU    29      -5.134  61.195  -3.986  1.00 25.00           C
ATOM     30  CA  LEU    30      -4.942  57.781  -5.711  1.00 25.00           C
ATOM     31  CA  GLY    31      -4.673  56.049  -2.306  1.00 25.00           C
ATOM     32  CA  ASN    32      -7.720  57.999  -1.046  1.00 25.00           C
ATOM     33  CA  GLN    33      -9.690  56.988  -4.171  1.00 25.00           C
ATOM     34  CA  ILE    34      -8.719  53.324  -3.628  1.00 25.00           C
ATOM     35  CA  SER    35      -9.845  53.541   0.026  1.00 25.00           C
ATOM     36  CA  ARG    36     -13.185  55.065  -1.069  1.00 25.00           C
ATOM     37  CA  PHE    37     -13.658  52.253  -3.625  1.00 25.00           C
ATOM     38  CA  ASN    38     -12.914  49.640  -0.925  1.00 25.00           C
ATOM     39  CA  ARG    39     -15.460  51.294   1.411  1.00 25.00           C
ATOM     40  CA  LEU    40     -18.078  51.266  -1.383  1.00 25.00           C
ATOM     41  CA  PHE    41     -17.384  47.557  -2.031  1.00 25.00           C
ATOM     42  CA  GLY    42     -17.765  46.808   1.705  1.00 25.00           C
ATOM     43  CA  VAL    43     -21.088  48.712   1.773  1.00 25.00           C
ATOM     44  CA  MET    44     -22.311  46.734  -1.269  1.00 25.00           C
ATOM     45  CA  ALA    45     -21.324  43.450   0.437  1.00 25.00           C
ATOM     46  CA  GLU    46     -23.202  44.503   3.604  1.00 25.00           C
ATOM     47  CA  ILE    47     -26.297  45.356   1.515  1.00 25.00           C
ATOM     48  CA  ALA    48     -26.103  41.941  -0.209  1.00 25.00           C
ATOM     49  CA  ASP    49     -25.836  40.209   3.196  1.00 25.00           C
ATOM     50  CA  GLU    50     -28.882  42.159   4.455  1.00 25.00           C
ATOM     51  CA  LEU    51     -30.852  41.148   1.330  1.00 25.00           C
ATOM     52  CA  LYS    52     -29.881  37.484   1.874  1.00 25.00           C
ATOM     53  CA  ALA    53     -28.658  38.336  -1.624  1.00 25.00           C
ATOM     54  CA  ARG    54     -28.127  40.599  -4.649  1.00 25.00           C
ATOM     55  CA  ASP    55     -26.716  43.261  -6.942  1.00 25.00           C
ATOM     56  CA  GLY    56     -23.879  44.119  -9.327  1.00 25.00           C
ATOM     57  CA  ASP    57     -23.641  47.257  -7.256  1.00 25.00           C
ATOM     58  CA  GLN    58     -19.935  46.937  -6.550  1.00 25.00           C
ATOM     59  CA  ARG    59     -16.947  46.428  -8.892  1.00 25.00           C
ATOM     60  CA  THR    60     -19.262  46.652 -11.935  1.00 25.00           C
ATOM     61  CA  ALA    61     -20.790  49.885 -10.565  1.00 25.00           C
ATOM     62  CA  LEU    62     -17.289  51.341 -10.027  1.00 25.00           C
ATOM     63  CA  LEU    63     -16.321  50.404 -13.612  1.00 25.00           C
ATOM     64  CA  SER    64     -19.503  52.076 -14.934  1.00 25.00           C
ATOM     65  CA  LEU    65     -18.709  55.234 -12.918  1.00 25.00           C
ATOM     66  CA  PHE    66     -15.147  55.268 -14.325  1.00 25.00           C
ATOM     67  CA  GLU    67     -16.523  54.900 -17.880  1.00 25.00           C
ATOM     68  CA  TYR    68     -20.086  56.142 -17.801  1.00 25.00           C
ATOM     69  CA  PRO    69     -18.934  58.724 -20.397  1.00 25.00           C
ATOM     70  CA  ASN    70     -16.272  61.226 -21.640  1.00 25.00           C
ATOM     71  CA  MET    71     -14.274  64.449 -21.016  1.00 25.00           C
ATOM     72  CA  GLN    72     -14.103  66.985 -18.151  1.00 25.00           C
ATOM     73  CA  VAL    73     -17.856  66.561 -17.518  1.00 25.00           C
ATOM     74  CA  ARG    74     -17.440  62.754 -17.461  1.00 25.00           C
ATOM     75  CA  LEU    75     -14.548  63.082 -14.972  1.00 25.00           C
ATOM     76  CA  GLN    76     -16.685  65.356 -12.752  1.00 25.00           C
ATOM     77  CA  ALA    77     -19.551  62.819 -12.869  1.00 25.00           C
ATOM     78  CA  ALA    78     -17.136  60.008 -11.907  1.00 25.00           C
ATOM     79  CA  LYS    79     -15.825  62.103  -8.981  1.00 25.00           C
ATOM     80  CA  LEU    80     -19.412  62.769  -7.818  1.00 25.00           C
ATOM     81  CA  THR    81     -20.194  59.024  -8.006  1.00 25.00           C
ATOM     82  CA  LEU    82     -17.051  58.241  -5.962  1.00 25.00           C
ATOM     83  CA  ALA    83     -18.077  60.838  -3.343  1.00 25.00           C
ATOM     84  CA  VAL    84     -21.581  59.302  -3.154  1.00 25.00           C
ATOM     85  CA  ALA    85     -20.054  55.818  -2.697  1.00 25.00           C
ATOM     86  CA  PRO    86     -17.799  57.146   0.098  1.00 25.00           C
ATOM     87  CA  VAL    87     -20.824  58.750   1.812  1.00 25.00           C
ATOM     88  CA  LYS    88     -22.746  55.446   1.563  1.00 25.00           C
ATOM     89  CA  ALA    89     -19.769  53.572   3.077  1.00 25.00           C
ATOM     90  CA  ARG    90     -19.597  56.108   5.942  1.00 25.00           C
ATOM     91  CA  GLU    91     -23.351  55.683   6.575  1.00 25.00           C
ATOM     92  CA  GLN    92     -22.935  51.876   6.632  1.00 25.00           C
ATOM     93  CA  LEU    93     -20.043  52.205   9.121  1.00 25.00           C
ATOM     94  CA  GLU    94     -22.180  54.479  11.342  1.00 25.00           C
ATOM     95  CA  ALA    95     -25.046  51.941  11.223  1.00 25.00           C
ATOM     96  CA  ILE    96     -22.631  49.130  12.185  1.00 25.00           C
ATOM     97  CA  VAL    97     -21.320  51.225  15.112  1.00 25.00           C
ATOM     98  CA  SER    98     -24.908  51.890  16.275  1.00 25.00           C
ATOM     99  CA  SER    99     -25.689  48.145  16.087  1.00 25.00           C
ATOM    100  CA  LYS   100     -22.884  47.880  18.685  1.00 25.00           C
ATOM    101  CA  TRP   101     -19.231  46.962  18.340  1.00 25.00           C
ATOM    102  CA  PHE   102     -17.065  47.441  15.241  1.00 25.00           C
ATOM    103  CA  PRO   103     -14.171  46.900  17.688  1.00 25.00           C
ATOM    104  CA  GLN   104     -10.540  46.441  18.706  1.00 25.00           C
ATOM    105  CA  ALA   105      -8.262  46.971  15.660  1.00 25.00           C
ATOM    106  CA  GLY   106      -5.741  49.347  17.264  1.00 25.00           C
ATOM    107  CA  ASP   107      -4.869  50.972  13.941  1.00 25.00           C
ATOM    108  CA  ALA   108      -6.886  51.536  10.821  1.00 25.00           C
ATOM    109  CA  GLY   109      -8.541  53.287   7.927  1.00 25.00           C
ATOM    110  CA  MET   110     -10.384  53.361   4.570  1.00 25.00           C
ATOM    111  CA  CYS   111     -13.052  55.672   6.058  1.00 25.00           C
ATOM    112  CA  LEU   112     -10.322  57.989   7.416  1.00 25.00           C
ATOM    113  CA  ASP   113      -8.642  58.068   3.975  1.00 25.00           C
ATOM    114  CA  LEU   114     -11.995  58.917   2.330  1.00 25.00           C
ATOM    115  CA  LEU   115     -12.549  61.737   4.861  1.00 25.00           C
ATOM    116  CA  ASP   116     -11.912  64.565   7.328  1.00 25.00           C
ATOM    117  CA  ASP   117     -11.367  67.768   9.307  1.00 25.00           C
ATOM    118  CA  GLY   118     -11.234  71.023  11.175  1.00 25.00           C
ATOM    119  CA  THR   119      -8.600  70.074  13.811  1.00 25.00           C
ATOM    120  CA  PHE   120     -11.699  69.079  15.830  1.00 25.00           C
ATOM    121  CA  LYS   121      -9.121  68.868  18.679  1.00 25.00           C
ATOM    122  CA  PRO   122      -5.664  70.297  18.169  1.00 25.00           C
TER
END
