
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS393_4
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS393_4.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        83 - 120         4.95    23.67
  LONGEST_CONTINUOUS_SEGMENT:    38        84 - 121         4.99    23.66
  LCS_AVERAGE:     21.23

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        95 - 119         1.96    22.87
  LONGEST_CONTINUOUS_SEGMENT:    25        96 - 120         1.81    22.72
  LCS_AVERAGE:      8.92

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        99 - 117         0.73    22.48
  LCS_AVERAGE:      5.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    6   13     0    3    4    5    7    8    9   10   11   12   12   14   17   18   27   28   37   42   44   45 
LCS_GDT     M       4     M       4      3    6   13     0    3    4    5    7    8    9   10   11   12   12   14   17   18   19   23   25   30   34   43 
LCS_GDT     N       5     N       5      3    6   13     0    3    4    5    6    8    9   10   11   12   12   14   17   18   19   20   21   30   31   32 
LCS_GDT     L       6     L       6      3    6   13     0    3    4    5    7    8    9   10   11   12   12   14   17   18   19   23   25   30   31   32 
LCS_GDT     K       7     K       7      3    6   13     1    3    4    5    7    8    9   10   11   12   12   14   17   18   19   23   34   37   40   41 
LCS_GDT     R       8     R       8      4    6   13     0    3    4    5    7    8    9   10   11   12   13   15   19   25   38   44   48   49   52   52 
LCS_GDT     E       9     E       9      4    6   13     3    3    4    5    6    6    7   10   13   13   18   27   30   38   39   45   48   50   52   53 
LCS_GDT     Q      10     Q      10      4    6   13     3    3    4    5    6    8   12   16   19   25   28   32   33   38   40   45   48   50   52   53 
LCS_GDT     E      11     E      11      4    6   13     3    3    4    5    6    6    6   11   13   16   17   22   26   28   31   42   45   50   52   53 
LCS_GDT     F      12     F      12      3    4   13     3    3    3    3    3    4    6   16   29   31   33   35   36   37   39   42   45   48   52   53 
LCS_GDT     V      13     V      13      3    4   13     3    3    3    3    5    9   13   16   18   22   26   31   33   37   38   40   46   46   49   50 
LCS_GDT     S      14     S      14      3    4   13     3    3    4    5    8   12   13   16   21   23   28   31   33   35   38   40   46   46   49   50 
LCS_GDT     Q      15     Q      15      3    4   13     3    3    3    5    8   12   13   16   21   23   28   31   33   35   37   40   46   46   49   50 
LCS_GDT     Y      16     Y      16      4    5   13     3    3    5    6    8   10   12   16   20   23   28   31   33   35   37   39   41   44   49   50 
LCS_GDT     H      17     H      17      4    5   15     3    3    4    5    5    9   10   15   21   23   28   31   33   35   37   39   41   43   49   50 
LCS_GDT     F      18     F      18      4    5   15     3    3    4    5    5    9    9   15   21   23   28   31   33   35   37   39   41   43   49   50 
LCS_GDT     D      19     D      19      4    6   15     3    3    4    5    5    9    9   11   12   15   24   30   33   34   36   39   41   41   44   48 
LCS_GDT     A      20     A      20      4    6   15     3    3    4    5    6    9    9   11   12   15   24   30   33   34   36   39   41   41   44   48 
LCS_GDT     R      21     R      21      4    6   15     3    3    4    5    6    7    9   11   12   15   21   29   33   34   36   39   41   41   46   48 
LCS_GDT     N      22     N      22      4    6   15     3    3    4    5    6    7    9   11   12   14   15   18   19   25   29   36   39   41   46   48 
LCS_GDT     F      23     F      23      7    7   15     5    6    7    7    7    7    9   11   12   14   15   16   16   18   19   21   24   26   29   43 
LCS_GDT     E      24     E      24      7    7   15     5    6    7    7    7    7    9   11   12   13   15   16   16   18   19   21   22   26   37   43 
LCS_GDT     W      25     W      25      7    7   15     5    6    7    7    7    7    9   11   12   13   15   16   16   19   25   31   37   45   50   52 
LCS_GDT     E      26     E      26      7    7   21     5    6    7    7    7    7    9   11   12   14   15   18   20   25   31   37   43   48   50   52 
LCS_GDT     N      27     N      27      7    7   21     5    6    7    7    7    7    9   11   12   14   15   17   20   25   30   37   43   48   50   52 
LCS_GDT     E      28     E      28      7    7   21     3    6    7    7    7    7    9   11   12   14   16   19   25   29   34   40   43   48   50   52 
LCS_GDT     N      29     N      29      7    7   21     3    4    7    7    9   12   13   14   16   21   24   26   31   33   37   40   43   48   50   52 
LCS_GDT     G      30     G      30      4    5   21     3    3    5    6    9   12   16   17   20   22   24   30   33   33   37   40   43   48   49   52 
LCS_GDT     A      31     A      31      4    6   22     3    4    5    6    9   12   16   17   20   22   25   31   33   35   37   40   43   48   50   52 
LCS_GDT     P      32     P      32      4    9   22     4    6    7    9   11   13   16   17   20   23   28   31   33   35   37   40   46   48   50   53 
LCS_GDT     E      33     E      33      4    9   22     3    4    5    7   10   12   16   17   20   23   28   31   33   35   38   40   43   48   50   53 
LCS_GDT     T      34     T      34      4    9   22     3    4    7    9   11   13   16   17   22   29   31   34   38   40   41   43   46   48   50   53 
LCS_GDT     K      35     K      35      4    9   22     2    3    6    7   11   13   16   25   28   31   35   35   38   40   41   43   46   48   50   53 
LCS_GDT     V      36     V      36      4    9   24     3    3    6    7   11   13   22   26   28   31   35   36   38   40   41   43   46   48   50   53 
LCS_GDT     D      37     D      37      4    9   24     3    3    5    7    9   12   21   26   27   32   35   38   38   40   41   43   46   48   50   53 
LCS_GDT     V      38     V      38      4    9   24     3    3    6    7    9   12   16   17   19   23   28   31   33   35   37   40   46   48   50   53 
LCS_GDT     N      39     N      39      4    9   24     3    3    6    7    9   10   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     F      40     F      40      3    9   24     1    3    7    8    9   12   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     Q      41     Q      41      3    7   24     3    3    5    7    9   12   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     L      42     L      42      3    7   24     3    3    5    6    9   12   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     L      43     L      43      3    7   24     3    3    5    7    9   12   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     Q      44     Q      44      3    7   24     3    3    5    7    9   12   16   17   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     H      45     H      45      3    7   24     3    4    6    7    9   12   16   17   20   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     D      46     D      46      4    5   24     4    4    4    5    6   11   15   17   20   23   27   30   33   35   37   40   46   48   50   52 
LCS_GDT     Q      47     Q      47      4    5   24     4    4    4    4    4    6    8    9   13   19   26   27   31   33   37   40   46   48   49   52 
LCS_GDT     E      48     E      48      4    5   24     4    4    4    4    5    5    7    9   11   12   18   23   26   30   31   37   41   44   47   49 
LCS_GDT     N      49     N      49      4    6   24     4    4    4    5    7    9   13   16   18   22   26   30   33   35   37   40   46   48   50   52 
LCS_GDT     Q      50     Q      50      5    9   24     3    3    5    8    9   10   13   16   20   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     V      51     V      51      7    9   24     3    5    7    8    9   10   13   15   20   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     T      52     T      52      7    9   24     3    5    7    8    9   12   13   16   21   23   28   31   33   35   37   40   46   48   50   52 
LCS_GDT     S      53     S      53      7    9   24     3    5    7    8    9   12   13   16   21   23   27   30   33   35   37   40   46   48   50   52 
LCS_GDT     L      54     L      54      7    9   24     3    5    7    8    9   12   13   16   21   23   28   31   33   35   38   40   46   48   50   52 
LCS_GDT     I      55     I      55      7    9   24     3    5    7    8    9   12   13   16   21   23   28   31   33   38   40   45   48   50   52   53 
LCS_GDT     V      56     V      56      7    9   24     3    5    7    8    9   12   15   17   21   23   28   31   33   35   38   44   48   50   52   53 
LCS_GDT     I      57     I      57      7    9   24     3    5    7    8   15   18   23   26   27   31   32   35   36   37   39   42   46   50   52   53 
LCS_GDT     L      58     L      58      4    9   24     3    4   20   22   23   25   26   30   32   34   35   38   38   40   41   42   46   48   52   53 
LCS_GDT     S      59     S      59      4    8   24     3    4    4   13   23   24   27   30   32   34   35   38   38   40   41   43   46   48   50   53 
LCS_GDT     F      60     F      60      4    8   24     3    6    7    9   11   13   15   17   20   33   35   38   38   40   41   43   46   48   50   53 
LCS_GDT     M      61     M      61      5    8   23     3    4    5    9   11   13   15   17   20   31   35   35   38   40   41   43   46   48   50   53 
LCS_GDT     I      62     I      62      5    8   21     3    4    5    7   11   13   15   17   20   29   31   34   38   40   41   43   46   48   50   53 
LCS_GDT     V      63     V      63      5    8   21     3    4    7    9   11   13   15   17   22   29   31   33   38   40   41   43   46   48   50   53 
LCS_GDT     F      64     F      64      5    8   21     4    6    7    9   11   12   15   17   20   22   24   27   36   40   40   42   44   48   50   53 
LCS_GDT     D      65     D      65      5    8   21     4    6    7    9   11   12   15   17   19   22   24   27   29   34   38   40   43   46   50   53 
LCS_GDT     K      66     K      66      5    8   21     3    4    5    6    8   11   12   16   18   20   25   27   36   40   40   42   44   46   49   53 
LCS_GDT     F      67     F      67      5    8   21     3    4    5    6    8   11   12   16   18   30   31   34   38   40   41   43   45   46   49   53 
LCS_GDT     V      68     V      68      5    7   21     3    4    5    6    8   11   12   25   28   31   35   35   38   40   41   43   45   46   49   53 
LCS_GDT     I      69     I      69      3    7   21     3    3    4    5    6   10   12   26   28   33   35   38   38   40   41   43   45   46   50   53 
LCS_GDT     S      70     S      70      3    5   21     1    3    4    5    6    9   20   26   29   33   35   38   38   40   41   43   45   46   50   53 
LCS_GDT     G      71     G      71      3    5   21     0    3    4    5    7    9   11   17   18   33   35   38   38   40   41   43   45   48   50   53 
LCS_GDT     T      72     T      72      3    5   21     1    4    5    5    6    7   23   27   32   34   35   38   38   40   41   42   46   48   50   53 
LCS_GDT     I      73     I      73      3    5   21     2    4    5    5    6    9   11   23   25   29   32   35   36   38   40   45   48   50   52   53 
LCS_GDT     S      74     S      74      5    8   33     1    4    6    8    9    9   11   13   15   20   23   27   33   38   40   45   48   50   52   53 
LCS_GDT     Q      75     Q      75      6    8   33     2    4    7    8    9    9   14   18   19   22   26   28   32   38   40   45   48   50   52   53 
LCS_GDT     V      76     V      76      6    8   33     3    4    7    8    9    9   14   18   19   22   25   28   31   38   39   45   48   50   52   53 
LCS_GDT     N      77     N      77      6    8   33     3    4    7    8    9   12   14   18   19   22   25   28   33   38   40   45   48   50   52   53 
LCS_GDT     H      78     H      78      6    8   33     3    4    7    8    9   12   14   18   19   22   25   28   33   38   40   45   48   50   52   53 
LCS_GDT     I      79     I      79      6    8   33     3    4    7    8    9    9   14   18   19   22   25   28   31   34   38   41   44   47   49   53 
LCS_GDT     D      80     D      80      6    8   33     3    4    7    8    9   12   14   18   19   22   25   28   31   34   38   41   44   47   49   53 
LCS_GDT     G      81     G      81      4    8   33     3    3    7    8    9    9   13   18   19   21   25   28   31   34   38   40   43   45   49   53 
LCS_GDT     R      82     R      82      3    8   33     3    3    5    6    8   12   14   18   19   22   25   28   32   38   40   45   48   50   52   53 
LCS_GDT     I      83     I      83      3    8   38     3    3    4    5    7    9   10   12   19   22   25   28   31   38   40   45   48   50   52   53 
LCS_GDT     V      84     V      84      3    6   38     3    3    4    6    8   12   14   18   20   25   27   31   33   38   40   45   48   50   52   53 
LCS_GDT     N      85     N      85      3    6   38     1    3    4    4    8   12   14   18   20   24   28   32   33   38   40   45   48   50   52   53 
LCS_GDT     E      86     E      86      3    6   38     1    3    4    5    7   12   14   18   23   26   30   32   34   38   40   45   48   50   52   53 
LCS_GDT     P      87     P      87      3    6   38     1    3    3    5    6    7   10   12   16   21   24   28   33   37   39   44   47   50   52   53 
LCS_GDT     S      88     S      88      4    6   38     3    3    4    6    7   11   13   23   29   31   33   35   35   37   39   45   48   50   52   53 
LCS_GDT     E      89     E      89      4    6   38     3    3    4   13   19   21   25   29   31   34   34   36   38   40   41   45   48   50   52   53 
LCS_GDT     L      90     L      90      4    6   38     3    3   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     N      91     N      91      4   16   38     3    3    4   14   23   24   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     Q      92     Q      92     10   18   38     8    9    9   12   15   17   20   23   27   28   31   35   38   40   41   45   48   50   52   53 
LCS_GDT     E      93     E      93     10   22   38     8    9    9   12   17   22   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     E      94     E      94     10   24   38     8    9    9   12   17   23   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     V      95     V      95     10   25   38     8    9   11   14   23   24   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     E      96     E      96     10   25   38     8    9   11   16   23   24   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     T      97     T      97     10   25   38     8   10   17   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L      98     L      98     17   25   38     8    9   11   18   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     A      99     A      99     19   25   38     9   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     R     100     R     100     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     P     101     P     101     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   43   47   50   52   53 
LCS_GDT     C     102     C     102     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L     103     L     103     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     N     104     N     104     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     M     105     M     105     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L     106     L     106     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     N     107     N     107     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     R     108     R     108     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L     109     L     109     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     T     110     T     110     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     Y     111     Y     111     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     E     112     E     112     19   25   38     8   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     V     113     V     113     19   25   38     8   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     T     114     T     114     19   25   38     7   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     E     115     E     115     19   25   38     7   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     I     116     I     116     19   25   38    11   17   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     A     117     A     117     19   25   38     4   14   20   22   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L     118     L     118     12   25   38     3    3   10   17   22   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     D     119     D     119     10   25   38     3    3   14   20   23   25   27   30   32   34   35   38   38   40   41   45   48   50   52   53 
LCS_GDT     L     120     L     120      5   25   38     3    4    5    7   16   23   26   29   32   34   35   38   38   40   41   44   48   49   52   53 
LCS_GDT     P     121     P     121      5    7   38     4    4    5    6    7    7    8   11   12   16   26   30   33   40   41   41   42   44   45   48 
LCS_GDT     G     122     G     122      5    7   36     4    4    5    6    7    7    8    9   10   14   15   16   18   21   23   33   35   38   40   43 
LCS_GDT     I     123     I     123      5    7   35     4    4    5    6    7    7    8    9   10   11   15   16   18   21   31   33   35   38   40   43 
LCS_GDT     N     124     N     124      5    7   15     4    4    5    6    6    7    8    9   10   11   13   14   14   15   15   17   21   22   27   32 
LCS_GDT     L     125     L     125      5    7   15     3    4    5    6    6    7    7    9   10   11   13   14   14   15   15   18   19   24   27   32 
LCS_GDT     E     126     E     126      5    7   15     3    4    5    6    6    7    7    8    9   11   13   14   14   15   15   17   19   21   24   27 
LCS_GDT     F     127     F     127      5    7   15     3    3    5    5    6    6    7    8    8   10   13   14   14   15   15   17   19   22   24   27 
LCS_AVERAGE  LCS_A:  11.96  (   5.72    8.92   21.23 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     20     22     23     25     27     30     32     34     35     38     38     40     41     45     48     50     52     53 
GDT PERCENT_CA   8.80  13.60  16.00  17.60  18.40  20.00  21.60  24.00  25.60  27.20  28.00  30.40  30.40  32.00  32.80  36.00  38.40  40.00  41.60  42.40
GDT RMS_LOCAL    0.25   0.58   0.81   1.04   1.24   1.52   2.07   2.37   2.58   2.79   3.06   3.38   3.38   3.66   3.80   5.69   5.98   6.06   6.20   6.30
GDT RMS_ALL_CA  22.18  22.41  22.49  22.73  22.71  22.71  23.35  23.05  23.03  23.16  23.09  23.01  23.01  22.96  23.09  23.32  23.40  23.31  23.41  23.36

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         45.702
LGA    M       4      M       4         39.883
LGA    N       5      N       5         37.655
LGA    L       6      L       6         31.571
LGA    K       7      K       7         28.258
LGA    R       8      R       8         23.052
LGA    E       9      E       9         25.299
LGA    Q      10      Q      10         23.364
LGA    E      11      E      11         19.819
LGA    F      12      F      12         13.554
LGA    V      13      V      13         13.481
LGA    S      14      S      14         13.876
LGA    Q      15      Q      15         12.527
LGA    Y      16      Y      16         17.150
LGA    H      17      H      17         20.927
LGA    F      18      F      18         25.381
LGA    D      19      D      19         29.613
LGA    A      20      A      20         34.177
LGA    R      21      R      21         32.358
LGA    N      22      N      22         30.539
LGA    F      23      F      23         30.416
LGA    E      24      E      24         33.144
LGA    W      25      W      25         31.258
LGA    E      26      E      26         32.286
LGA    N      27      N      27         37.764
LGA    E      28      E      28         38.659
LGA    N      29      N      29         37.838
LGA    G      30      G      30         37.821
LGA    A      31      A      31         33.818
LGA    P      32      P      32         27.856
LGA    E      33      E      33         24.418
LGA    T      34      T      34         18.707
LGA    K      35      K      35         15.133
LGA    V      36      V      36          9.710
LGA    D      37      D      37          7.091
LGA    V      38      V      38         10.611
LGA    N      39      N      39         16.516
LGA    F      40      F      40         20.766
LGA    Q      41      Q      41         25.311
LGA    L      42      L      42         31.286
LGA    L      43      L      43         36.131
LGA    Q      44      Q      44         42.560
LGA    H      45      H      45         47.644
LGA    D      46      D      46         49.561
LGA    Q      47      Q      47         49.824
LGA    E      48      E      48         50.476
LGA    N      49      N      49         51.427
LGA    Q      50      Q      50         46.875
LGA    V      51      V      51         41.710
LGA    T      52      T      52         35.725
LGA    S      53      S      53         31.867
LGA    L      54      L      54         25.339
LGA    I      55      I      55         19.929
LGA    V      56      V      56         16.078
LGA    I      57      I      57          9.289
LGA    L      58      L      58          3.530
LGA    S      59      S      59          3.620
LGA    F      60      F      60          6.446
LGA    M      61      M      61         10.740
LGA    I      62      I      62         15.128
LGA    V      63      V      63         17.920
LGA    F      64      F      64         20.927
LGA    D      65      D      65         26.219
LGA    K      66      K      66         24.306
LGA    F      67      F      67         17.563
LGA    V      68      V      68         13.843
LGA    I      69      I      69          8.359
LGA    S      70      S      70          7.604
LGA    G      71      G      71          6.098
LGA    T      72      T      72          4.659
LGA    I      73      I      73          8.031
LGA    S      74      S      74         14.512
LGA    Q      75      Q      75         17.054
LGA    V      76      V      76         18.009
LGA    N      77      N      77         18.702
LGA    H      78      H      78         20.726
LGA    I      79      I      79         24.014
LGA    D      80      D      80         27.266
LGA    G      81      G      81         28.195
LGA    R      82      R      82         21.650
LGA    I      83      I      83         19.795
LGA    V      84      V      84         16.048
LGA    N      85      N      85         18.465
LGA    E      86      E      86         18.971
LGA    P      87      P      87         16.531
LGA    S      88      S      88         11.482
LGA    E      89      E      89          5.903
LGA    L      90      L      90          3.439
LGA    N      91      N      91          3.256
LGA    Q      92      Q      92          7.119
LGA    E      93      E      93          4.411
LGA    E      94      E      94          3.928
LGA    V      95      V      95          3.512
LGA    E      96      E      96          2.688
LGA    T      97      T      97          0.514
LGA    L      98      L      98          1.851
LGA    A      99      A      99          1.857
LGA    R     100      R     100          3.480
LGA    P     101      P     101          3.431
LGA    C     102      C     102          2.025
LGA    L     103      L     103          2.098
LGA    N     104      N     104          2.798
LGA    M     105      M     105          2.100
LGA    L     106      L     106          0.865
LGA    N     107      N     107          1.818
LGA    R     108      R     108          1.725
LGA    L     109      L     109          1.220
LGA    T     110      T     110          0.962
LGA    Y     111      Y     111          1.015
LGA    E     112      E     112          1.095
LGA    V     113      V     113          0.910
LGA    T     114      T     114          0.308
LGA    E     115      E     115          1.111
LGA    I     116      I     116          1.522
LGA    A     117      A     117          0.506
LGA    L     118      L     118          3.887
LGA    D     119      D     119          3.677
LGA    L     120      L     120          4.562
LGA    P     121      P     121          9.905
LGA    G     122      G     122         14.796
LGA    I     123      I     123         17.038
LGA    N     124      N     124         24.293
LGA    L     125      L     125         25.909
LGA    E     126      E     126         32.363
LGA    F     127      F     127         31.686

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     30    2.37    22.800    19.430     1.214

LGA_LOCAL      RMSD =  2.371  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.168  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 16.081  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.798689 * X  +   0.101723 * Y  +   0.593084 * Z  +   8.573123
  Y_new =   0.598428 * X  +  -0.030950 * Y  +  -0.800578 * Z  +  31.774439
  Z_new =  -0.063081 * X  +   0.994331 * Y  +  -0.085594 * Z  +   3.956771 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.656666   -1.484926  [ DEG:    94.9200    -85.0800 ]
  Theta =   0.063123    3.078470  [ DEG:     3.6167    176.3833 ]
  Phi   =   0.643030   -2.498563  [ DEG:    36.8429   -143.1571 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS393_4                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS393_4.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   30   2.37  19.430    16.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS393_4
PFRMAT TS
TARGET T0383
MODEL 4
PARENT N/A
ATOM      1  CA  SER     1      -0.557  19.272 -14.432  1.00 25.00           C
ATOM      2  CA  ASN     2      -1.967  22.760 -14.125  1.00 25.00           C
ATOM      3  CA  ALA     3      -1.099  22.529 -10.371  1.00 25.00           C
ATOM      4  CA  MET     4       1.270  23.564  -7.538  1.00 25.00           C
ATOM      5  CA  ASN     5       1.933  24.042  -3.879  1.00 25.00           C
ATOM      6  CA  LEU     6       4.574  22.934  -1.313  1.00 25.00           C
ATOM      7  CA  LYS     7       4.075  25.752   1.191  1.00 25.00           C
ATOM      8  CA  ARG     8       3.104  28.640   3.468  1.00 25.00           C
ATOM      9  CA  GLU     9       1.188  30.350   0.742  1.00 25.00           C
ATOM     10  CA  GLN    10      -0.561  32.171   3.563  1.00 25.00           C
ATOM     11  CA  GLU    11      -2.416  29.501   5.587  1.00 25.00           C
ATOM     12  CA  PHE    12       0.649  29.043   7.837  1.00 25.00           C
ATOM     13  CA  VAL    13       0.856  32.830   8.368  1.00 25.00           C
ATOM     14  CA  SER    14      -2.865  32.932   9.272  1.00 25.00           C
ATOM     15  CA  GLN    15      -2.363  30.067  11.765  1.00 25.00           C
ATOM     16  CA  TYR    16      -5.747  28.789  10.504  1.00 25.00           C
ATOM     17  CA  HIS    17      -7.000  31.859  12.406  1.00 25.00           C
ATOM     18  CA  PHE    18      -5.188  32.045  15.811  1.00 25.00           C
ATOM     19  CA  ASP    19      -8.104  32.012  18.268  1.00 25.00           C
ATOM     20  CA  ALA    20      -5.393  32.516  20.891  1.00 25.00           C
ATOM     21  CA  ARG    21      -4.086  29.060  20.080  1.00 25.00           C
ATOM     22  CA  ASN    22      -1.286  29.136  17.484  1.00 25.00           C
ATOM     23  CA  PHE    23       0.693  27.181  14.912  1.00 25.00           C
ATOM     24  CA  GLU    24       1.946  23.801  16.206  1.00 25.00           C
ATOM     25  CA  TRP    25       5.403  25.310  16.870  1.00 25.00           C
ATOM     26  CA  GLU    26       3.794  28.225  18.764  1.00 25.00           C
ATOM     27  CA  ASN    27       1.741  25.762  20.858  1.00 25.00           C
ATOM     28  CA  GLU    28       4.909  23.762  21.656  1.00 25.00           C
ATOM     29  CA  ASN    29       6.599  26.016  24.235  1.00 25.00           C
ATOM     30  CA  GLY    30       9.796  24.556  22.660  1.00 25.00           C
ATOM     31  CA  ALA    31       9.240  22.248  19.643  1.00 25.00           C
ATOM     32  CA  PRO    32       9.897  21.024  16.091  1.00 25.00           C
ATOM     33  CA  GLU    33      10.132  24.405  14.280  1.00 25.00           C
ATOM     34  CA  THR    34       7.830  25.319  11.393  1.00 25.00           C
ATOM     35  CA  LYS    35       5.282  24.776   8.610  1.00 25.00           C
ATOM     36  CA  VAL    36       5.729  28.448   7.853  1.00 25.00           C
ATOM     37  CA  ASP    37       6.226  31.047   5.178  1.00 25.00           C
ATOM     38  CA  VAL    38       5.791  32.345   1.644  1.00 25.00           C
ATOM     39  CA  ASN    39       6.321  30.221  -1.426  1.00 25.00           C
ATOM     40  CA  PHE    40       5.520  33.483  -3.294  1.00 25.00           C
ATOM     41  CA  GLN    41       8.718  34.757  -4.990  1.00 25.00           C
ATOM     42  CA  LEU    42      11.047  37.140  -6.825  1.00 25.00           C
ATOM     43  CA  LEU    43       8.829  38.412  -9.679  1.00 25.00           C
ATOM     44  CA  GLN    44       7.764  40.194 -12.875  1.00 25.00           C
ATOM     45  CA  HIS    45       6.481  40.365 -16.422  1.00 25.00           C
ATOM     46  CA  ASP    46       2.889  40.774 -15.089  1.00 25.00           C
ATOM     47  CA  GLN    47       0.262  42.511 -12.911  1.00 25.00           C
ATOM     48  CA  GLU    48       3.022  43.907 -10.652  1.00 25.00           C
ATOM     49  CA  ASN    49       4.915  45.197 -13.722  1.00 25.00           C
ATOM     50  CA  GLN    50       8.432  45.794 -12.418  1.00 25.00           C
ATOM     51  CA  VAL    51      10.845  43.767 -10.281  1.00 25.00           C
ATOM     52  CA  THR    52       9.194  44.595  -6.898  1.00 25.00           C
ATOM     53  CA  SER    53      10.433  41.722  -4.725  1.00 25.00           C
ATOM     54  CA  LEU    54       9.265  39.327  -2.033  1.00 25.00           C
ATOM     55  CA  ILE    55       6.906  37.331   0.161  1.00 25.00           C
ATOM     56  CA  VAL    56       3.411  36.936   1.577  1.00 25.00           C
ATOM     57  CA  ILE    57       3.886  35.647   5.101  1.00 25.00           C
ATOM     58  CA  LEU    58       6.363  35.482   7.996  1.00 25.00           C
ATOM     59  CA  SER    59       6.736  32.674  10.493  1.00 25.00           C
ATOM     60  CA  PHE    60      10.093  32.045   8.709  1.00 25.00           C
ATOM     61  CA  MET    61      10.724  28.347   8.167  1.00 25.00           C
ATOM     62  CA  ILE    62      12.335  24.974   9.054  1.00 25.00           C
ATOM     63  CA  VAL    63      10.098  22.373   7.317  1.00 25.00           C
ATOM     64  CA  PHE    64       9.487  18.781   6.341  1.00 25.00           C
ATOM     65  CA  ASP    65       9.115  14.969   6.425  1.00 25.00           C
ATOM     66  CA  LYS    66       6.300  12.826   5.119  1.00 25.00           C
ATOM     67  CA  PHE    67       5.275  15.962   3.262  1.00 25.00           C
ATOM     68  CA  VAL    68       4.755  19.652   4.106  1.00 25.00           C
ATOM     69  CA  ILE    69       7.355  22.232   2.966  1.00 25.00           C
ATOM     70  CA  SER    70      11.038  22.610   1.990  1.00 25.00           C
ATOM     71  CA  GLY    71      12.027  25.794   3.832  1.00 25.00           C
ATOM     72  CA  THR    72       8.336  26.763   3.663  1.00 25.00           C
ATOM     73  CA  ILE    73      10.100  29.835   2.125  1.00 25.00           C
ATOM     74  CA  SER    74      10.782  32.664  -0.349  1.00 25.00           C
ATOM     75  CA  GLN    75      12.815  35.626   0.957  1.00 25.00           C
ATOM     76  CA  VAL    76      10.378  36.368   3.782  1.00 25.00           C
ATOM     77  CA  ASN    77       8.158  39.208   4.995  1.00 25.00           C
ATOM     78  CA  HIS    78       5.548  40.541   7.372  1.00 25.00           C
ATOM     79  CA  ILE    79       4.113  42.409   4.442  1.00 25.00           C
ATOM     80  CA  ASP    80       2.883  45.576   6.259  1.00 25.00           C
ATOM     81  CA  GLY    81       1.370  48.720   7.664  1.00 25.00           C
ATOM     82  CA  ARG    82       1.527  47.039  11.067  1.00 25.00           C
ATOM     83  CA  ILE    83       5.316  46.722  10.701  1.00 25.00           C
ATOM     84  CA  VAL    84       8.021  49.091  11.718  1.00 25.00           C
ATOM     85  CA  ASN    85       8.727  52.716  12.516  1.00 25.00           C
ATOM     86  CA  GLU    86      10.361  56.113  12.211  1.00 25.00           C
ATOM     87  CA  PRO    87       9.991  56.716  15.981  1.00 25.00           C
ATOM     88  CA  SER    88      10.646  53.788  18.300  1.00 25.00           C
ATOM     89  CA  GLU    89       9.823  51.086  20.848  1.00 25.00           C
ATOM     90  CA  LEU    90       9.397  48.582  18.091  1.00 25.00           C
ATOM     91  CA  ASN    91       9.249  44.865  17.569  1.00 25.00           C
ATOM     92  CA  GLN    92      12.038  44.832  20.152  1.00 25.00           C
ATOM     93  CA  GLU    93      15.619  44.860  18.796  1.00 25.00           C
ATOM     94  CA  GLU    94      16.058  41.193  19.811  1.00 25.00           C
ATOM     95  CA  VAL    95      12.772  40.290  18.062  1.00 25.00           C
ATOM     96  CA  GLU    96      13.923  42.122  14.902  1.00 25.00           C
ATOM     97  CA  THR    97      17.257  40.239  14.995  1.00 25.00           C
ATOM     98  CA  LEU    98      15.397  36.913  15.370  1.00 25.00           C
ATOM     99  CA  ALA    99      13.157  37.802  12.393  1.00 25.00           C
ATOM    100  CA  ARG   100      16.243  38.671  10.299  1.00 25.00           C
ATOM    101  CA  PRO   101      17.859  35.331  11.250  1.00 25.00           C
ATOM    102  CA  CYS   102      14.659  33.473  10.261  1.00 25.00           C
ATOM    103  CA  LEU   103      14.603  35.310   6.900  1.00 25.00           C
ATOM    104  CA  ASN   104      18.271  34.381   6.303  1.00 25.00           C
ATOM    105  CA  MET   105      17.502  30.719   7.119  1.00 25.00           C
ATOM    106  CA  LEU   106      14.550  30.770   4.679  1.00 25.00           C
ATOM    107  CA  ASN   107      16.792  32.266   1.959  1.00 25.00           C
ATOM    108  CA  ARG   108      19.413  29.546   2.589  1.00 25.00           C
ATOM    109  CA  LEU   109      16.709  26.846   2.338  1.00 25.00           C
ATOM    110  CA  THR   110      15.475  28.355  -0.959  1.00 25.00           C
ATOM    111  CA  TYR   111      19.056  28.382  -2.315  1.00 25.00           C
ATOM    112  CA  GLU   112      19.495  24.715  -1.300  1.00 25.00           C
ATOM    113  CA  VAL   113      16.209  23.813  -3.049  1.00 25.00           C
ATOM    114  CA  THR   114      17.359  25.644  -6.209  1.00 25.00           C
ATOM    115  CA  GLU   115      20.694  23.761  -6.116  1.00 25.00           C
ATOM    116  CA  ILE   116      18.833  20.435  -5.741  1.00 25.00           C
ATOM    117  CA  ALA   117      16.594  21.324  -8.718  1.00 25.00           C
ATOM    118  CA  LEU   118      19.660  20.644 -10.858  1.00 25.00           C
ATOM    119  CA  ASP   119      23.378  19.934 -11.325  1.00 25.00           C
ATOM    120  CA  LEU   120      24.649  22.713 -13.495  1.00 25.00           C
ATOM    121  CA  PRO   121      24.536  22.320 -17.267  1.00 25.00           C
ATOM    122  CA  GLY   122      21.320  21.186 -19.036  1.00 25.00           C
ATOM    123  CA  ILE   123      17.887  19.742 -18.071  1.00 25.00           C
ATOM    124  CA  ASN   124      17.377  16.336 -19.684  1.00 25.00           C
ATOM    125  CA  LEU   125      15.557  14.667 -16.796  1.00 25.00           C
ATOM    126  CA  GLU   126      14.214  11.152 -17.104  1.00 25.00           C
ATOM    127  CA  PHE   127      12.849  11.607 -13.557  1.00 25.00           C
TER
END
