
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS393_5
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS393_5.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        83 - 120         4.87    23.51
  LONGEST_CONTINUOUS_SEGMENT:    38        84 - 121         4.82    23.35
  LCS_AVERAGE:     22.69

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        95 - 119         1.96    22.52
  LCS_AVERAGE:      9.13

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        99 - 118         0.97    22.35
  LCS_AVERAGE:      5.86

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    6   12     1    3    4    5    5    6    7    9    9   10   11   13   14   16   20   20   22   24   27   28 
LCS_GDT     M       4     M       4      3    6   12     2    3    4    5    5    6    7    9    9   10   11   13   14   16   20   20   22   24   27   27 
LCS_GDT     N       5     N       5      3    6   12     0    3    3    5    5    6    7    9    9   10   11   13   14   16   19   19   20   24   27   27 
LCS_GDT     L       6     L       6      3    6   12     0    3    4    6    6    6    7    9    9   10   11   13   14   16   19   19   20   24   27   27 
LCS_GDT     K       7     K       7      4    6   12     1    4    5    6    6    6    7    9    9   10   11   13   14   16   20   20   22   24   27   27 
LCS_GDT     R       8     R       8      4    6   12     2    4    5    6    6    6    7    9    9   10   11   18   21   23   30   31   36   39   44   51 
LCS_GDT     E       9     E       9      4    6   12     3    4    5    6    6    6    6    8   11   12   16   18   20   23   30   32   40   46   51   54 
LCS_GDT     Q      10     Q      10      4    6   12     3    4    5    6    7    8   13   14   20   23   28   33   36   39   42   45   47   50   54   56 
LCS_GDT     E      11     E      11      4    6   12     3    3    5    6    6    7   10   13   17   21   25   31   34   39   42   45   47   50   54   56 
LCS_GDT     F      12     F      12      3    4   12     3    3    3    3    4   11   17   27   31   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     V      13     V      13      3    4   12     3    3    3    4    6    9   11   28   32   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     S      14     S      14      3    4   12     3    3    4    7   10   12   14   18   21   34   36   37   37   39   41   45   47   50   51   54 
LCS_GDT     Q      15     Q      15      3    4   11     3    3    4    7   10   12   14   18   21   25   26   29   33   38   41   45   47   48   50   53 
LCS_GDT     Y      16     Y      16      3    5   15     3    3    3    6    8   10   14   18   21   25   26   29   33   39   41   45   47   50   51   54 
LCS_GDT     H      17     H      17      4    5   19     3    4    4    5    6   13   16   20   22   23   26   28   31   35   36   41   45   48   49   50 
LCS_GDT     F      18     F      18      4    5   19     3    4    4    7   11   13   16   20   22   23   26   28   31   35   36   39   43   45   49   50 
LCS_GDT     D      19     D      19      4    5   19     3    4    4    5    7   13   16   19   22   23   24   27   29   33   34   39   41   45   45   48 
LCS_GDT     A      20     A      20      4    5   19     0    4    4    5    6   11   14   19   20   20   21   25   28   33   34   38   40   42   45   48 
LCS_GDT     R      21     R      21      4    5   19     3    4    4    5    6    8   10   10   12   13   18   22   26   29   32   34   37   41   44   47 
LCS_GDT     N      22     N      22      7    7   19     3    4    4    7    7    8   10   10   12   13   16   17   20   23   28   29   34   38   39   42 
LCS_GDT     F      23     F      23      7    7   19     5    6    6    7    7    8   10   10   12   13   16   17   20   20   23   27   33   36   39   42 
LCS_GDT     E      24     E      24      7    7   19     5    6    6    7    7    8   10   10   12   13   16   17   20   22   28   32   33   38   40   44 
LCS_GDT     W      25     W      25      7    7   22     5    6    6    7    7    8   10   10   12   13   13   17   20   22   28   35   38   42   46   48 
LCS_GDT     E      26     E      26      7    7   22     5    6    6    7    7    8   10   10   12   13   16   19   20   26   31   34   37   41   47   49 
LCS_GDT     N      27     N      27      7    7   22     5    6    6    7    7    8   10   10   12   13   16   19   20   20   24   31   36   41   43   48 
LCS_GDT     E      28     E      28      7    7   22     5    6    6    7    7    8   10   10   12   14   16   20   26   29   34   39   43   45   47   49 
LCS_GDT     N      29     N      29      6    9   22     3    5    6    8   10   13   15   18   20   22   25   28   29   32   36   39   43   45   47   49 
LCS_GDT     G      30     G      30      6    9   22     3    5    6    8   10   13   15   18   20   22   25   26   29   32   36   39   43   45   47   49 
LCS_GDT     A      31     A      31      6    9   31     3    5    6    8   10   14   15   18   21   22   25   28   31   35   36   39   43   45   48   49 
LCS_GDT     P      32     P      32      6    9   31     3    5    6    8   10   15   17   18   21   24   26   29   33   36   38   41   45   48   49   51 
LCS_GDT     E      33     E      33      6    9   31     3    5    5    9   10   15   17   20   21   24   26   29   33   36   38   41   45   48   49   51 
LCS_GDT     T      34     T      34      6    9   31     3    4    6    9   10   13   16   19   22   23   25   28   31   34   38   41   45   48   49   53 
LCS_GDT     K      35     K      35      5    9   31     3    4    5    9   11   14   17   20   22   24   26   29   33   36   38   41   45   48   50   53 
LCS_GDT     V      36     V      36      5    9   31     3    4    6    8   11   15   17   20   22   24   27   29   33   39   42   45   47   50   54   56 
LCS_GDT     D      37     D      37      5    9   31     3    4    6    8   11   15   17   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     V      38     V      38      4    9   31     3    4    6    8   10   15   17   20   22   24   27   29   33   39   42   45   47   50   54   56 
LCS_GDT     N      39     N      39      4    9   31     3    4    6    8   11   15   17   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     F      40     F      40      4    9   31     3    4    6    8   11   14   17   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     Q      41     Q      41      4    9   31     3    4    6    8   11   14   16   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     L      42     L      42      4    9   31     3    4    6    8   11   14   16   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     L      43     L      43      4    9   31     3    4    6    7   11   14   16   20   22   23   27   29   34   39   42   45   47   50   54   56 
LCS_GDT     Q      44     Q      44      3    9   31     3    4    6    8   10   14   16   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     H      45     H      45      4    7   31     3    4    4    8   10   15   17   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     D      46     D      46      4    6   31     4    4    6    8   10   15   17   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     Q      47     Q      47      4    6   31     4    4    4    5    7   13   15   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     E      48     E      48      4    6   31     4    4    4    5    7    7    7    8   13   18   23   26   32   39   42   45   47   50   54   56 
LCS_GDT     N      49     N      49      4    6   31     4    4    4    5    7    7    7   12   19   25   26   31   34   39   42   45   47   50   54   56 
LCS_GDT     Q      50     Q      50      3    8   31     3    3    5    7    7   13   15   17   20   23   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     V      51     V      51      3    8   31     3    3    5    8    9   13   16   18   21   23   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     T      52     T      52      3    8   31     3    3    6    8    8   12   15   17   21   22   24   28   32   39   42   45   47   50   54   56 
LCS_GDT     S      53     S      53      5    8   31     3    5    5    7   10   13   16   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     L      54     L      54      5    8   31     3    5    5    7   10   13   16   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     I      55     I      55      5    8   31     3    5    5    7   10   15   17   20   22   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     V      56     V      56      5    8   31     3    5    5    7   11   15   17   20   22   25   30   33   36   40   42   45   47   50   54   56 
LCS_GDT     I      57     I      57      5    8   31     3    5    5    7   10   15   18   22   28   32   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     L      58     L      58      4    7   31     4    4   19   22   24   25   29   30   32   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     S      59     S      59      4    7   31     4    4    5    7   10   23   28   29   31   31   32   33   34   39   42   45   47   50   54   56 
LCS_GDT     F      60     F      60      4    9   31     4    4    5    9   10   15   17   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     M      61     M      61      4    9   31     4    4    5    9   10   13   16   18   21   25   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     I      62     I      62      4    9   29     3    4    5    7   10   12   15   18   21   23   25   28   32   39   42   45   47   50   54   56 
LCS_GDT     V      63     V      63      6    9   29     3    4    6    7   10   13   16   18   20   23   25   28   31   39   41   45   47   50   54   56 
LCS_GDT     F      64     F      64      6    9   24     3    5    6    9   10   13   16   18   20   23   25   28   30   33   38   41   47   50   54   56 
LCS_GDT     D      65     D      65      6    9   24     3    5    6    7   10   12   15   17   20   22   25   28   30   33   38   41   47   50   54   56 
LCS_GDT     K      66     K      66      6    9   24     3    5    6    9   10   13   16   18   20   23   25   27   30   33   38   41   46   50   54   56 
LCS_GDT     F      67     F      67      6    9   24     3    5    6    8   10   13   16   18   20   23   25   27   30   33   37   40   46   48   53   56 
LCS_GDT     V      68     V      68      6    9   24     3    5    6    8   10   13   16   18   20   23   25   27   30   33   38   41   47   50   54   56 
LCS_GDT     I      69     I      69      3    8   24     3    4    5    6    8   13   16   18   20   23   25   28   31   33   38   41   47   50   54   56 
LCS_GDT     S      70     S      70      5    8   24     0    4    6    6    8   10   15   17   19   23   27   31   34   39   42   45   47   50   54   56 
LCS_GDT     G      71     G      71      5    8   24     3    4    6    6    8   12   15   17   19   23   27   32   34   39   42   45   47   50   54   56 
LCS_GDT     T      72     T      72      5    8   24     3    4    6    6    8   10   14   17   19   23   27   33   34   39   42   45   47   50   54   56 
LCS_GDT     I      73     I      73      5    8   24     3    4    6    6    8   12   15   17   19   23   31   34   37   40   42   45   47   50   54   56 
LCS_GDT     S      74     S      74      5    8   24     3    4    6    6   10   13   16   18   20   23   27   31   34   40   42   45   47   50   54   56 
LCS_GDT     Q      75     Q      75      5    8   24     4    4    6    7    9   13   16   18   20   23   27   31   36   39   42   45   47   50   54   56 
LCS_GDT     V      76     V      76      5    8   24     4    4    5    6    7    9   12   14   19   21   25   31   36   39   42   45   47   50   54   56 
LCS_GDT     N      77     N      77      5    8   28     4    4    5    6    8   10   13   14   19   21   27   31   36   39   42   45   47   50   54   56 
LCS_GDT     H      78     H      78      5    8   28     4    4    5    6    7    9   10   14   18   21   24   26   29   35   38   42   45   48   53   56 
LCS_GDT     I      79     I      79      5    8   28     3    4    5    6    8   10   13   14   18   20   24   26   33   39   42   45   47   50   54   56 
LCS_GDT     D      80     D      80      4    8   28     3    4    5    6    8   10   13   14   18   20   24   26   29   33   37   40   47   50   54   56 
LCS_GDT     G      81     G      81      4    8   28     3    4    5    6    8   10   13   14   16   19   24   25   29   33   37   40   44   48   52   56 
LCS_GDT     R      82     R      82      4    8   28     3    4    5    6    8   10   13   14   18   20   24   25   29   33   37   42   45   48   50   54 
LCS_GDT     I      83     I      83      4    8   38     3    4    5    5    8    9   13   14   15   17   20   23   26   28   32   38   44   48   50   52 
LCS_GDT     V      84     V      84      3    7   38     3    3    4    5    6    8   13   14   21   29   30   33   36   40   41   43   45   48   50   54 
LCS_GDT     N      85     N      85      4    7   38     3    3    4    5    6    7   13   16   24   29   30   33   36   40   41   43   45   48   50   52 
LCS_GDT     E      86     E      86      4    7   38     3    3    4    8   23   23   23   27   30   33   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     P      87     P      87      4    7   38     3    3    4    5    6    7    8   12   13   17   19   21   24   33   39   40   44   46   48   50 
LCS_GDT     S      88     S      88      4    7   38     3    4    4    5    6    7   11   12   18   26   33   36   37   38   39   40   42   46   48   49 
LCS_GDT     E      89     E      89      4    7   38     3    4    4    9   20   24   29   30   32   34   36   37   37   38   40   42   45   47   49   52 
LCS_GDT     L      90     L      90      4    5   38     3    4   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   54 
LCS_GDT     N      91     N      91      4   16   38     5   10   17   21   24   25   29   30   32   34   36   37   37   40   41   43   47   50   54   56 
LCS_GDT     Q      92     Q      92     10   18   38     8    9    9   13   15   17   21   24   28   31   33   33   35   39   42   45   47   50   54   56 
LCS_GDT     E      93     E      93     10   22   38     8    9    9   13   16   23   29   30   32   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     E      94     E      94     10   24   38     8    9    9   13   18   23   29   30   32   34   36   37   37   40   41   43   45   48   50   52 
LCS_GDT     V      95     V      95     10   25   38     8    9   11   14   23   25   29   30   32   34   36   37   37   40   41   43   47   50   54   56 
LCS_GDT     E      96     E      96     10   25   38     8    9   11   18   24   25   29   30   32   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     T      97     T      97     10   25   38     8   10   18   22   24   25   29   30   32   34   36   37   37   40   41   45   47   50   51   54 
LCS_GDT     L      98     L      98     17   25   38     8    9   10   20   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   54 
LCS_GDT     A      99     A      99     20   25   38     9   17   19   22   24   25   29   30   32   34   36   37   37   40   42   45   47   50   54   56 
LCS_GDT     R     100     R     100     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   45   47   50   51   54 
LCS_GDT     P     101     P     101     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     C     102     C     102     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   45   47   50   54   56 
LCS_GDT     L     103     L     103     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   45   47   50   51   55 
LCS_GDT     N     104     N     104     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     M     105     M     105     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     L     106     L     106     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     N     107     N     107     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     R     108     R     108     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     L     109     L     109     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     T     110     T     110     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     Y     111     Y     111     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     E     112     E     112     20   25   38     8   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     V     113     V     113     20   25   38     8   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     T     114     T     114     20   25   38     7   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     E     115     E     115     20   25   38     7   16   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     I     116     I     116     20   25   38    11   17   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     A     117     A     117     20   25   38     4   14   19   22   24   25   29   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     L     118     L     118     20   25   38     4    8   14   19   23   25   28   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     D     119     D     119     10   25   38     4    6   14   19   23   23   27   30   32   34   36   37   37   40   41   43   45   48   50   51 
LCS_GDT     L     120     L     120      4   24   38     3    4    6    6    7    7   15   22   27   30   34   37   37   40   41   43   45   48   50   51 
LCS_GDT     P     121     P     121      4    8   38     3    4    6    6    7    7    8    9   10   11   16   22   29   31   37   39   42   44   49   51 
LCS_GDT     G     122     G     122      4    8   36     3    4    6    6    7    7    8    9    9   10   13   13   15   18   21   24   24   32   36   40 
LCS_GDT     I     123     I     123      3    8   15     3    3    6    6    7    7    8    9    9   10   13   13   15   18   21   26   29   32   34   40 
LCS_GDT     N     124     N     124      3    8   15     3    3    6    6    7    7    8    9    9   10   13   13   15   15   15   16   20   23   24   28 
LCS_GDT     L     125     L     125      3    5   15     3    3    3    4    4    6    8    9    9   10   13   13   15   15   17   18   21   26   26   28 
LCS_GDT     E     126     E     126      3    5   15     0    0    3    4    5    6    6    7    9   10   13   13   15   15   18   19   24   27   30   36 
LCS_GDT     F     127     F     127      0    5   15     0    3    3    4    5    6    6    6    8   10   13   13   15   15   17   19   24   26   26   36 
LCS_AVERAGE  LCS_A:  12.56  (   5.86    9.13   22.69 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     19     22     24     25     29     30     32     34     36     37     37     40     42     45     47     50     54     56 
GDT PERCENT_CA   8.80  13.60  15.20  17.60  19.20  20.00  23.20  24.00  25.60  27.20  28.80  29.60  29.60  32.00  33.60  36.00  37.60  40.00  43.20  44.80
GDT RMS_LOCAL    0.25   0.58   0.73   1.05   1.30   1.42   2.09   2.21   2.67   2.94   3.24   3.42   3.39   4.39   5.25   5.50   5.68   6.08   6.51   6.66
GDT RMS_ALL_CA  21.94  22.21  22.32  22.40  22.50  22.57  22.89  22.87  23.03  23.20  23.21  23.14  23.27  23.09  20.90  20.81  20.74  20.58  20.48  20.51

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         42.877
LGA    M       4      M       4         37.332
LGA    N       5      N       5         33.487
LGA    L       6      L       6         26.323
LGA    K       7      K       7         23.706
LGA    R       8      R       8         19.911
LGA    E       9      E       9         21.691
LGA    Q      10      Q      10         20.055
LGA    E      11      E      11         16.784
LGA    F      12      F      12          9.848
LGA    V      13      V      13          9.078
LGA    S      14      S      14          9.665
LGA    Q      15      Q      15         10.108
LGA    Y      16      Y      16         13.879
LGA    H      17      H      17         16.572
LGA    F      18      F      18         23.106
LGA    D      19      D      19         26.872
LGA    A      20      A      20         32.612
LGA    R      21      R      21         33.416
LGA    N      22      N      22         30.894
LGA    F      23      F      23         34.338
LGA    E      24      E      24         37.778
LGA    W      25      W      25         32.354
LGA    E      26      E      26         32.567
LGA    N      27      N      27         39.894
LGA    E      28      E      28         39.844
LGA    N      29      N      29         38.587
LGA    G      30      G      30         36.689
LGA    A      31      A      31         34.632
LGA    P      32      P      32         30.186
LGA    E      33      E      33         27.410
LGA    T      34      T      34         22.237
LGA    K      35      K      35         18.213
LGA    V      36      V      36         13.688
LGA    D      37      D      37         10.877
LGA    V      38      V      38          9.981
LGA    N      39      N      39         14.307
LGA    F      40      F      40         19.794
LGA    Q      41      Q      41         25.789
LGA    L      42      L      42         28.760
LGA    L      43      L      43         34.021
LGA    Q      44      Q      44         40.171
LGA    H      45      H      45         44.654
LGA    D      46      D      46         47.949
LGA    Q      47      Q      47         47.325
LGA    E      48      E      48         48.353
LGA    N      49      N      49         46.121
LGA    Q      50      Q      50         45.773
LGA    V      51      V      51         40.196
LGA    T      52      T      52         36.914
LGA    S      53      S      53         32.185
LGA    L      54      L      54         25.263
LGA    I      55      I      55         18.635
LGA    V      56      V      56         12.822
LGA    I      57      I      57          7.013
LGA    L      58      L      58          1.543
LGA    S      59      S      59          5.466
LGA    F      60      F      60         10.944
LGA    M      61      M      61         17.887
LGA    I      62      I      62         18.049
LGA    V      63      V      63         22.987
LGA    F      64      F      64         26.043
LGA    D      65      D      65         32.982
LGA    K      66      K      66         31.526
LGA    F      67      F      67         25.742
LGA    V      68      V      68         21.777
LGA    I      69      I      69         14.871
LGA    S      70      S      70         12.670
LGA    G      71      G      71          9.206
LGA    T      72      T      72          7.199
LGA    I      73      I      73          9.023
LGA    S      74      S      74         12.902
LGA    Q      75      Q      75         17.985
LGA    V      76      V      76         17.526
LGA    N      77      N      77         18.829
LGA    H      78      H      78         19.662
LGA    I      79      I      79         22.368
LGA    D      80      D      80         26.915
LGA    G      81      G      81         26.600
LGA    R      82      R      82         19.887
LGA    I      83      I      83         18.447
LGA    V      84      V      84         14.814
LGA    N      85      N      85         16.487
LGA    E      86      E      86         12.675
LGA    P      87      P      87         12.701
LGA    S      88      S      88          8.331
LGA    E      89      E      89          3.585
LGA    L      90      L      90          2.604
LGA    N      91      N      91          0.953
LGA    Q      92      Q      92          6.489
LGA    E      93      E      93          3.876
LGA    E      94      E      94          3.646
LGA    V      95      V      95          3.045
LGA    E      96      E      96          2.128
LGA    T      97      T      97          0.964
LGA    L      98      L      98          2.297
LGA    A      99      A      99          2.033
LGA    R     100      R     100          3.576
LGA    P     101      P     101          3.401
LGA    C     102      C     102          2.001
LGA    L     103      L     103          2.182
LGA    N     104      N     104          2.746
LGA    M     105      M     105          1.939
LGA    L     106      L     106          0.749
LGA    N     107      N     107          1.772
LGA    R     108      R     108          1.503
LGA    L     109      L     109          0.861
LGA    T     110      T     110          0.854
LGA    Y     111      Y     111          0.910
LGA    E     112      E     112          0.659
LGA    V     113      V     113          0.551
LGA    T     114      T     114          0.905
LGA    E     115      E     115          1.454
LGA    I     116      I     116          1.458
LGA    A     117      A     117          0.993
LGA    L     118      L     118          3.940
LGA    D     119      D     119          5.018
LGA    L     120      L     120          8.769
LGA    P     121      P     121         12.714
LGA    G     122      G     122         17.011
LGA    I     123      I     123         20.598
LGA    N     124      N     124         26.328
LGA    L     125      L     125         26.720
LGA    E     126      E     126         28.705
LGA    F     127      F     127         28.439

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     30    2.21    22.800    19.559     1.297

LGA_LOCAL      RMSD =  2.213  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.891  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 16.322  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.902121 * X  +  -0.190565 * Y  +   0.387121 * Z  +   9.874047
  Y_new =   0.194944 * X  +   0.620390 * Y  +   0.759680 * Z  +  29.906353
  Z_new =  -0.384934 * X  +   0.760790 * Y  +  -0.522518 * Z  +   5.534093 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.172615   -0.968978  [ DEG:   124.4816    -55.5184 ]
  Theta =   0.395136    2.746456  [ DEG:    22.6396    157.3604 ]
  Phi   =   2.928770   -0.212822  [ DEG:   167.8062    -12.1938 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS393_5                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS393_5.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   30   2.21  19.559    16.32
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS393_5
PFRMAT TS
TARGET T0383
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1       8.824   7.016  -2.078  1.00 25.00           C
ATOM      2  CA  ASN     2       5.297   8.365  -1.659  1.00 25.00           C
ATOM      3  CA  ALA     3       5.283  11.965  -0.350  1.00 25.00           C
ATOM      4  CA  MET     4       8.283  14.034   0.696  1.00 25.00           C
ATOM      5  CA  ASN     5       9.625  16.623   3.124  1.00 25.00           C
ATOM      6  CA  LEU     6      11.134  17.995   6.294  1.00 25.00           C
ATOM      7  CA  LYS     7       9.150  21.212   5.990  1.00 25.00           C
ATOM      8  CA  ARG     8       6.601  24.105   6.067  1.00 25.00           C
ATOM      9  CA  GLU     9       4.207  23.008   3.281  1.00 25.00           C
ATOM     10  CA  GLN    10       1.901  25.859   4.151  1.00 25.00           C
ATOM     11  CA  GLU    11       0.025  24.595   7.242  1.00 25.00           C
ATOM     12  CA  PHE    12       3.115  25.242   9.411  1.00 25.00           C
ATOM     13  CA  VAL    13       3.402  28.785   7.987  1.00 25.00           C
ATOM     14  CA  SER    14      -0.302  29.412   8.733  1.00 25.00           C
ATOM     15  CA  GLN    15       0.182  28.156  12.318  1.00 25.00           C
ATOM     16  CA  TYR    16      -1.759  24.891  11.971  1.00 25.00           C
ATOM     17  CA  HIS    17      -4.867  26.489  10.487  1.00 25.00           C
ATOM     18  CA  PHE    18      -5.501  27.999  13.945  1.00 25.00           C
ATOM     19  CA  ASP    19      -8.290  26.754  16.105  1.00 25.00           C
ATOM     20  CA  ALA    20      -6.910  27.763  19.448  1.00 25.00           C
ATOM     21  CA  ARG    21      -4.046  29.569  21.147  1.00 25.00           C
ATOM     22  CA  ASN    22      -2.410  29.183  17.736  1.00 25.00           C
ATOM     23  CA  PHE    23       1.239  29.462  18.812  1.00 25.00           C
ATOM     24  CA  GLU    24       0.784  26.457  21.140  1.00 25.00           C
ATOM     25  CA  TRP    25       2.685  24.227  18.673  1.00 25.00           C
ATOM     26  CA  GLU    26       5.520  26.795  18.499  1.00 25.00           C
ATOM     27  CA  ASN    27       5.676  26.920  22.323  1.00 25.00           C
ATOM     28  CA  GLU    28       5.826  23.096  22.466  1.00 25.00           C
ATOM     29  CA  ASN    29       3.521  21.729  25.142  1.00 25.00           C
ATOM     30  CA  GLY    30       1.863  20.024  22.175  1.00 25.00           C
ATOM     31  CA  ALA    31       4.664  18.644  20.066  1.00 25.00           C
ATOM     32  CA  PRO    32       8.048  19.838  18.859  1.00 25.00           C
ATOM     33  CA  GLU    33       8.911  19.805  15.184  1.00 25.00           C
ATOM     34  CA  THR    34       9.180  20.541  11.426  1.00 25.00           C
ATOM     35  CA  LYS    35       8.684  24.250  12.367  1.00 25.00           C
ATOM     36  CA  VAL    36      10.723  25.172   9.242  1.00 25.00           C
ATOM     37  CA  ASP    37      11.686  28.624   7.880  1.00 25.00           C
ATOM     38  CA  VAL    38       8.952  29.334   5.365  1.00 25.00           C
ATOM     39  CA  ASN    39      10.052  30.598   1.942  1.00 25.00           C
ATOM     40  CA  PHE    40      11.934  32.465  -0.819  1.00 25.00           C
ATOM     41  CA  GLN    41      12.469  33.778  -4.343  1.00 25.00           C
ATOM     42  CA  LEU    42      12.336  37.572  -3.764  1.00 25.00           C
ATOM     43  CA  LEU    43      11.986  40.268  -6.445  1.00 25.00           C
ATOM     44  CA  GLN    44      11.060  39.893 -10.112  1.00 25.00           C
ATOM     45  CA  HIS    45       9.282  41.112 -13.190  1.00 25.00           C
ATOM     46  CA  ASP    46       9.378  44.873 -13.009  1.00 25.00           C
ATOM     47  CA  GLN    47      12.053  45.297 -10.302  1.00 25.00           C
ATOM     48  CA  GLU    48       9.700  47.555  -8.295  1.00 25.00           C
ATOM     49  CA  ASN    49       6.903  44.957  -8.604  1.00 25.00           C
ATOM     50  CA  GLN    50       4.859  43.132 -11.245  1.00 25.00           C
ATOM     51  CA  VAL    51       3.473  41.142  -8.313  1.00 25.00           C
ATOM     52  CA  THR    52       3.824  37.414  -8.586  1.00 25.00           C
ATOM     53  CA  SER    53       6.055  35.709  -5.957  1.00 25.00           C
ATOM     54  CA  LEU    54       7.198  34.078  -2.686  1.00 25.00           C
ATOM     55  CA  ILE    55       7.999  35.052   0.949  1.00 25.00           C
ATOM     56  CA  VAL    56       9.793  36.616   3.879  1.00 25.00           C
ATOM     57  CA  ILE    57       9.530  34.120   6.811  1.00 25.00           C
ATOM     58  CA  LEU    58       7.196  32.365   9.297  1.00 25.00           C
ATOM     59  CA  SER    59       7.435  29.018  10.965  1.00 25.00           C
ATOM     60  CA  PHE    60      10.770  29.387  12.846  1.00 25.00           C
ATOM     61  CA  MET    61      12.622  27.079  15.234  1.00 25.00           C
ATOM     62  CA  ILE    62      15.191  26.702  12.454  1.00 25.00           C
ATOM     63  CA  VAL    63      14.762  22.983  12.600  1.00 25.00           C
ATOM     64  CA  PHE    64      17.072  19.992  12.380  1.00 25.00           C
ATOM     65  CA  ASP    65      18.996  18.649  15.408  1.00 25.00           C
ATOM     66  CA  LYS    66      22.369  18.465  13.621  1.00 25.00           C
ATOM     67  CA  PHE    67      22.856  21.185  10.923  1.00 25.00           C
ATOM     68  CA  VAL    68      20.508  24.182  10.748  1.00 25.00           C
ATOM     69  CA  ILE    69      17.684  23.223   8.384  1.00 25.00           C
ATOM     70  CA  SER    70      14.283  21.678   7.787  1.00 25.00           C
ATOM     71  CA  GLY    71      14.008  22.594   4.090  1.00 25.00           C
ATOM     72  CA  THR    72      11.950  25.726   3.523  1.00 25.00           C
ATOM     73  CA  ILE    73       8.753  25.215   1.494  1.00 25.00           C
ATOM     74  CA  SER    74       5.892  27.792   1.416  1.00 25.00           C
ATOM     75  CA  GLN    75       4.041  31.076   0.689  1.00 25.00           C
ATOM     76  CA  VAL    76       4.347  31.708   4.438  1.00 25.00           C
ATOM     77  CA  ASN    77       4.801  35.464   5.113  1.00 25.00           C
ATOM     78  CA  HIS    78       6.008  38.048   7.629  1.00 25.00           C
ATOM     79  CA  ILE    79       4.100  40.921   6.005  1.00 25.00           C
ATOM     80  CA  ASP    80       0.678  42.056   7.127  1.00 25.00           C
ATOM     81  CA  GLY    81       1.674  45.400   8.537  1.00 25.00           C
ATOM     82  CA  ARG    82       3.022  43.945  11.767  1.00 25.00           C
ATOM     83  CA  ILE    83       6.775  43.936  11.396  1.00 25.00           C
ATOM     84  CA  VAL    84       7.830  47.502  12.370  1.00 25.00           C
ATOM     85  CA  ASN    85       5.704  50.679  12.712  1.00 25.00           C
ATOM     86  CA  GLU    86       4.410  52.844  15.560  1.00 25.00           C
ATOM     87  CA  PRO    87       6.106  54.192  18.721  1.00 25.00           C
ATOM     88  CA  SER    88       7.234  51.536  21.209  1.00 25.00           C
ATOM     89  CA  GLU    89       8.899  48.170  21.610  1.00 25.00           C
ATOM     90  CA  LEU    90       6.955  46.766  18.593  1.00 25.00           C
ATOM     91  CA  ASN    91      10.266  46.818  16.732  1.00 25.00           C
ATOM     92  CA  GLN    92      11.890  44.714  19.458  1.00 25.00           C
ATOM     93  CA  GLU    93      15.504  44.699  18.190  1.00 25.00           C
ATOM     94  CA  GLU    94      15.891  41.042  19.262  1.00 25.00           C
ATOM     95  CA  VAL    95      12.642  40.141  17.445  1.00 25.00           C
ATOM     96  CA  GLU    96      13.884  41.923  14.290  1.00 25.00           C
ATOM     97  CA  THR    97      17.200  40.019  14.490  1.00 25.00           C
ATOM     98  CA  LEU    98      15.307  36.710  14.860  1.00 25.00           C
ATOM     99  CA  ALA    99      13.147  37.576  11.819  1.00 25.00           C
ATOM    100  CA  ARG   100      16.291  38.397   9.791  1.00 25.00           C
ATOM    101  CA  PRO   101      17.859  35.058  10.824  1.00 25.00           C
ATOM    102  CA  CYS   102      14.671  33.210   9.779  1.00 25.00           C
ATOM    103  CA  LEU   103      14.710  35.003   6.396  1.00 25.00           C
ATOM    104  CA  ASN   104      18.385  34.041   5.901  1.00 25.00           C
ATOM    105  CA  MET   105      17.569  30.396   6.743  1.00 25.00           C
ATOM    106  CA  LEU   106      14.678  30.436   4.231  1.00 25.00           C
ATOM    107  CA  ASN   107      16.998  31.881   1.548  1.00 25.00           C
ATOM    108  CA  ARG   108      19.582  29.151   2.278  1.00 25.00           C
ATOM    109  CA  LEU   109      16.866  26.468   1.994  1.00 25.00           C
ATOM    110  CA  THR   110      15.724  27.942  -1.351  1.00 25.00           C
ATOM    111  CA  TYR   111      19.338  27.927  -2.619  1.00 25.00           C
ATOM    112  CA  GLU   112      19.724  24.271  -1.547  1.00 25.00           C
ATOM    113  CA  VAL   113      16.476  23.369  -3.365  1.00 25.00           C
ATOM    114  CA  THR   114      17.718  25.151  -6.519  1.00 25.00           C
ATOM    115  CA  GLU   115      21.035  23.247  -6.319  1.00 25.00           C
ATOM    116  CA  ILE   116      19.141  19.939  -5.948  1.00 25.00           C
ATOM    117  CA  ALA   117      16.983  20.805  -8.990  1.00 25.00           C
ATOM    118  CA  LEU   118      20.187  21.083 -11.114  1.00 25.00           C
ATOM    119  CA  ASP   119      21.803  17.674 -10.580  1.00 25.00           C
ATOM    120  CA  LEU   120      23.684  17.630 -13.867  1.00 25.00           C
ATOM    121  CA  PRO   121      22.984  18.391 -17.512  1.00 25.00           C
ATOM    122  CA  GLY   122      20.329  15.683 -17.462  1.00 25.00           C
ATOM    123  CA  ILE   123      18.356  13.164 -15.448  1.00 25.00           C
ATOM    124  CA  ASN   124      16.031  12.792 -18.446  1.00 25.00           C
ATOM    125  CA  LEU   125      14.262  15.990 -19.399  1.00 25.00           C
ATOM    126  CA  GLU   126      11.247  18.221 -18.528  1.00 25.00           C
ATOM    127  CA  PHE   127       9.320  21.517 -18.262  1.00 25.00           C
TER
END
