
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS599_3
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_3.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        30 - 76          4.92    18.79
  LONGEST_CONTINUOUS_SEGMENT:    47        31 - 77          4.67    18.99
  LONGEST_CONTINUOUS_SEGMENT:    47        32 - 78          4.82    19.09
  LCS_AVERAGE:     27.76

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        87 - 110         1.98    24.10
  LCS_AVERAGE:     11.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        86 - 100         0.99    27.40
  LCS_AVERAGE:      6.44

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    3   10     3    3    4    7    8    9    9   10   12   16   19   24   25   30   33   38   42   46   49   50 
LCS_GDT     M       4     M       4      3    3   10     3    3    4    7    8    9   10   10   12   16   22   27   32   37   39   41   45   47   49   50 
LCS_GDT     N       5     N       5      3    3   10     3    3    3    7    8    9   10   10   12   16   22   27   28   30   34   39   45   47   49   50 
LCS_GDT     L       6     L       6      3    3   10     3    3    3    4    5    8    8    9   10   10   12   14   17   19   28   39   45   47   49   50 
LCS_GDT     K       7     K       7      3    3   10     3    3    3    3    5    8    9   10   25   27   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     R       8     R       8      3    4   10     3    3    3    5    5    8    8   10   30   30   31   32   35   38   39   41   45   47   49   51 
LCS_GDT     E       9     E       9      3    4   10     3    3    3    5    5    6    7   18   25   30   31   32   35   37   39   41   45   47   49   50 
LCS_GDT     Q      10     Q      10      3    4   10     3    3    3    5    5    6    7    8    9   12   13   20   27   33   35   38   41   43   46   51 
LCS_GDT     E      11     E      11      3    4   10     3    3    3    4    4    6    7    8    9   12   13   13   15   19   22   27   31   37   46   51 
LCS_GDT     F      12     F      12      3    3   10     3    3    3    3    6    6    7    8    9   12   13   14   16   22   29   37   40   48   51   51 
LCS_GDT     V      13     V      13      4    4   10     3    3    4    4    4    6    7    8    9   12   13   15   18   23   27   30   39   48   51   56 
LCS_GDT     S      14     S      14      4    4   10     3    3    4    5    6    6    6    7    8   12   13   13   18   20   23   27   31   37   41   48 
LCS_GDT     Q      15     Q      15      4    7   11     3    3    4    5    6    7    7   10   10   13   17   20   22   24   35   39   46   50   56   58 
LCS_GDT     Y      16     Y      16      4    7   11     3    4    4    6    6    7    7    7    9   12   13   15   26   33   38   45   50   54   56   58 
LCS_GDT     H      17     H      17      5    7   11     3    4    5    6    6    7    7    7    8   10   15   27   32   41   47   50   52   54   56   58 
LCS_GDT     F      18     F      18      5    7   13     4    4    5    6    6    7   14   32   37   40   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     D      19     D      19      5    7   21     4    4    5    6    6    7    7   11   31   39   42   44   46   48   50   51   52   53   56   58 
LCS_GDT     A      20     A      20      5    7   21     4    4    5    6   11   15   16   20   31   34   36   41   44   47   49   50   52   53   56   58 
LCS_GDT     R      21     R      21      5    7   26     4    4    5    6    6    7    8   13   16   18   24   28   31   33   38   40   45   50   54   57 
LCS_GDT     N      22     N      22      4    7   40     3    4    4    4    6    7    8   13   15   16   30   36   41   41   44   47   49   51   54   57 
LCS_GDT     F      23     F      23      4    5   40     3    4    4    4    5    5    6    8   11   18   20   26   30   38   43   47   49   50   54   56 
LCS_GDT     E      24     E      24      4    5   40     3    4    4    6    7   10   13   15   20   26   32   36   41   41   44   47   49   51   54   57 
LCS_GDT     W      25     W      25      3    5   40     3    3    4    7   12   18   21   25   28   32   36   38   41   42   45   47   51   53   54   57 
LCS_GDT     E      26     E      26      3    4   40     3    3    8   13   15   18   21   25   30   32   36   38   41   45   47   49   51   53   56   58 
LCS_GDT     N      27     N      27      5    5   40     4    5    5    5    5    5    8   17   24   29   36   38   41   45   47   49   51   53   56   58 
LCS_GDT     E      28     E      28      5    5   40     4    5    5   10   12   16   18   21   24   29   36   38   41   45   47   49   51   53   56   58 
LCS_GDT     N      29     N      29      5    8   46     4    5    5    8    9   13   14   19   20   26   31   34   39   45   47   49   51   52   56   58 
LCS_GDT     G      30     G      30      5   11   47     4    5    6    9   11   13   15   18   24   29   33   36   41   45   47   49   51   53   56   58 
LCS_GDT     A      31     A      31      5   14   47     3    5    8   11   12   16   20   25   31   34   37   39   43   45   47   49   52   54   56   58 
LCS_GDT     P      32     P      32      7   15   47     3    6    8   11   18   22   27   31   33   35   39   41   45   46   48   50   52   54   56   58 
LCS_GDT     E      33     E      33      7   15   47     3    8   13   21   26   31   32   34   37   40   43   46   47   49   49   51   52   54   56   58 
LCS_GDT     T      34     T      34      7   15   47     3    9   15   21   29   31   33   35   39   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     K      35     K      35      9   15   47     6   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      36     V      36      9   15   47     4   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     D      37     D      37      9   15   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      38     V      38      9   15   47     6   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     N      39     N      39      9   15   47     6   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     F      40     F      40      9   15   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     Q      41     Q      41      9   15   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L      42     L      42      9   15   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L      43     L      43      9   15   47     3   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     Q      44     Q      44      6   15   47     3    6   17   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     H      45     H      45      6   15   47     3    5   12   21   27   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     D      46     D      46      6   15   47     6   10   17   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     Q      47     Q      47      5    5   47     4    5    5    5    5    6   14   32   37   40   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     E      48     E      48      5    5   47     4    5    5    5    5    6    7    7    8    9   14   17   44   47   50   51   52   53   56   58 
LCS_GDT     N      49     N      49      5    7   47     4    5    5    5    5   30   31   33   37   41   43   45   47   49   50   51   52   53   56   58 
LCS_GDT     Q      50     Q      50      5   21   47     4   10   20   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      51     V      51      3   21   47     3    8   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     T      52     T      52     10   21   47     3    4    8   20   27   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     S      53     S      53     11   22   47     6   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L      54     L      54     11   22   47     4   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     I      55     I      55     11   22   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      56     V      56     11   22   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     I      57     I      57     11   22   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L      58     L      58     11   22   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     S      59     S      59     12   22   47     7   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     F      60     F      60     13   22   47     6   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     M      61     M      61     13   22   47     5   13   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     I      62     I      62     13   22   47     9   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      63     V      63     13   22   47     6   12   18   25   28   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     F      64     F      64     13   22   47     6   12   18   23   28   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     D      65     D      65     13   22   47     6   12   16   23   27   30   34   37   40   41   43   46   47   49   50   51   52   54   55   58 
LCS_GDT     K      66     K      66     13   22   47     3    7   14   15   21   25   30   33   36   40   42   45   45   49   49   51   52   54   55   58 
LCS_GDT     F      67     F      67     13   22   47     6   12   18   23   27   30   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     V      68     V      68     13   22   47     3   12   18   23   27   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     I      69     I      69     13   22   47     5   12   18   24   28   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     S      70     S      70     13   22   47     8   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     G      71     G      71     13   22   47     3   10   18   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     T      72     T      72     13   22   47     4   12   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     I      73     I      73      5   22   47     3   14   21   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     S      74     S      74      5   22   47     3   10   15   25   29   31   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     Q      75     Q      75      3    3   47     3    3    4    5    7   13   20   28   33   38   43   45   47   49   50   51   52   54   56   58 
LCS_GDT     V      76     V      76      3    3   47     3    3    3   15   18   20   21   26   30   30   31   32   35   38   39   41   50   54   56   58 
LCS_GDT     N      77     N      77      3    3   47     3    3    5   15   17   18   19   21   24   27   29   32   35   42   47   49   51   54   56   58 
LCS_GDT     H      78     H      78      3    3   47     3    3    3    4   17   18   19   20   23   25   27   31   35   38   39   41   45   49   56   58 
LCS_GDT     I      79     I      79      4    5   36     3    4    4    8   17   18   19   20   23   23   28   32   35   38   39   41   45   47   49   51 
LCS_GDT     D      80     D      80      4    5   36     3    4    4    5    6   11   14   16   19   21   23   23   25   28   31   31   39   46   47   51 
LCS_GDT     G      81     G      81      4    5   36     3    4    4    5    6    6    7    8    9   12   13   13   18   21   25   28   31   37   44   51 
LCS_GDT     R      82     R      82      4    5   36     3    4    4    5   13   15   19   19   21   22   24   29   35   38   39   41   45   47   49   50 
LCS_GDT     I      83     I      83      6    9   36     3    5    6    7    8   10   12   14   17   21   23   24   28   38   39   40   45   47   49   50 
LCS_GDT     V      84     V      84      6    9   36     3    5    6    7    8    9   12   14   17   21   27   31   35   38   39   41   45   47   49   50 
LCS_GDT     N      85     N      85      6   17   36     3    4    6    7    8    9   11   14   17   21   28   32   35   38   39   41   45   47   49   50 
LCS_GDT     E      86     E      86     15   21   36     4    5   10   15   18   21   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     P      87     P      87     15   24   36     4    5   13   16   19   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     S      88     S      88     15   24   36     5   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     E      89     E      89     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     L      90     L      90     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     N      91     N      91     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     Q      92     Q      92     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   50 
LCS_GDT     E      93     E      93     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   53 
LCS_GDT     E      94     E      94     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   51 
LCS_GDT     V      95     V      95     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   47   49   53 
LCS_GDT     E      96     E      96     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   48   55   58 
LCS_GDT     T      97     T      97     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   48   56   58 
LCS_GDT     L      98     L      98     15   24   36    10   13   13   17   20   24   26   27   30   30   31   32   35   38   39   41   45   48   56   58 
LCS_GDT     A      99     A      99     15   24   36    10   13   13   17   19   24   26   27   30   30   31   32   35   38   39   43   50   54   56   58 
LCS_GDT     R     100     R     100     15   24   36    10   13   13   17   19   24   26   27   30   30   31   39   41   44   47   49   52   54   56   58 
LCS_GDT     P     101     P     101     14   24   36    10   12   14   17   20   24   26   27   30   32   38   40   44   46   48   50   52   54   56   58 
LCS_GDT     C     102     C     102     14   24   36    10   12   13   17   20   24   26   27   34   38   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L     103     L     103     14   24   36    10   12   13   17   20   24   26   32   35   39   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     N     104     N     104     14   24   36    10   12   14   18   26   29   33   36   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     M     105     M     105     14   24   36    10   12   13   19   26   30   34   37   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     L     106     L     106     14   24   36    10   12   17   22   28   31   33   36   40   41   43   46   47   49   50   51   52   54   56   58 
LCS_GDT     N     107     N     107     14   24   36    10   12   13   21   26   31   33   36   40   41   43   46   47   49   50   51   52   53   55   58 
LCS_GDT     R     108     R     108     14   24   36    10   12   13   16   20   25   32   35   39   39   43   45   45   48   50   51   52   53   55   58 
LCS_GDT     L     109     L     109     14   24   36     7   12   13   16   20   24   26   27   30   30   31   34   41   44   47   48   49   53   54   55 
LCS_GDT     T     110     T     110     14   24   33     7   12   13   16   19   24   26   27   30   30   31   32   35   38   44   45   47   50   52   55 
LCS_GDT     Y     111     Y     111      3   17   33     3    3    3    4    4    7   20   22   25   25   29   32   35   37   39   41   45   47   49   50 
LCS_GDT     E     112     E     112      3    3   33     3    3    7   10   13   15   17   19   22   25   28   32   35   37   39   41   45   47   49   50 
LCS_GDT     V     113     V     113      4    4   33     3    3    4    4    5    7    9   17   20   23   26   31   34   37   39   40   42   47   48   49 
LCS_GDT     T     114     T     114      4    4   33     3    3    7   10   13   14   17   19   22   24   27   32   35   37   39   40   45   47   48   49 
LCS_GDT     E     115     E     115      4    4   32     3    3    4    4    4    5   10   12   14   18   21   23   26   29   31   33   35   38   40   44 
LCS_GDT     I     116     I     116      4    4   30     3    3    4    4    5    5    6    9   10   12   14   16   17   20   24   26   28   30   34   36 
LCS_GDT     A     117     A     117      4    6   17     3    3    4    4    5    6    7    9   10   12   13   15   16   20   22   25   27   30   34   36 
LCS_GDT     L     118     L     118      4    6   16     3    3    4    4    5    6    7    7   10   11   13   14   16   18   22   25   27   30   32   36 
LCS_GDT     D     119     D     119      4    6   11     3    3    4    4    5    6    7    9   10   12   13   14   15   20   22   25   27   29   32   36 
LCS_GDT     L     120     L     120      4    6   11     3    5    5    5    5    6    7    9   10   12   13   14   15   20   22   25   27   29   32   36 
LCS_GDT     P     121     P     121      4    7   11     3    5    5    6    7    7    9    9   10   12   13   14   15   20   22   25   27   29   31   36 
LCS_GDT     G     122     G     122      5    7   11     3    5    5    6    6    7    9    9   10   12   13   14   15   20   22   25   27   29   32   36 
LCS_GDT     I     123     I     123      5    7   11     3    5    5    6    7    7    9    9   10   12   15   18   22   24   24   26   28   30   32   36 
LCS_GDT     N     124     N     124      5    7   11     3    5    5    6    7    7    9    9   10   11   13   18   22   24   26   29   32   32   38   39 
LCS_GDT     L     125     L     125      5    7   11     3    5    5    6    7    7    9    9   14   17   18   23   24   26   27   30   33   35   40   41 
LCS_GDT     E     126     E     126      5    7   11     1    5    5    6    7    7    9    9   15   16   21   23   24   29   30   31   34   37   40   43 
LCS_GDT     F     127     F     127      5    7   11     0    3    5    6    7    9   13   14   17   22   25   27   28   32   38   38   40   43   47   51 
LCS_AVERAGE  LCS_A:  15.08  (   6.44   11.02   27.76 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     21     25     29     31     34     37     40     41     43     46     47     49     50     51     52     54     56     58 
GDT PERCENT_CA   8.00  11.20  16.80  20.00  23.20  24.80  27.20  29.60  32.00  32.80  34.40  36.80  37.60  39.20  40.00  40.80  41.60  43.20  44.80  46.40
GDT RMS_LOCAL    0.22   0.58   1.01   1.20   1.49   1.65   1.95   2.21   2.43   2.53   2.80   3.18   3.29   3.57   3.82   3.94   4.03   4.84   5.57   5.13
GDT RMS_ALL_CA  23.43  19.97  19.86  19.59  19.49  19.84  19.69  19.77  19.89  19.80  19.76  19.52  19.59  19.57  19.81  19.85  19.75  19.07  18.81  19.35

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         34.690
LGA    M       4      M       4         31.502
LGA    N       5      N       5         30.463
LGA    L       6      L       6         30.747
LGA    K       7      K       7         30.409
LGA    R       8      R       8         23.852
LGA    E       9      E       9         22.893
LGA    Q      10      Q      10         23.203
LGA    E      11      E      11         21.685
LGA    F      12      F      12         17.477
LGA    V      13      V      13         15.650
LGA    S      14      S      14         17.684
LGA    Q      15      Q      15         13.996
LGA    Y      16      Y      16         12.256
LGA    H      17      H      17         10.512
LGA    F      18      F      18          6.147
LGA    D      19      D      19          9.480
LGA    A      20      A      20         11.767
LGA    R      21      R      21         18.336
LGA    N      22      N      22         19.642
LGA    F      23      F      23         20.227
LGA    E      24      E      24         21.159
LGA    W      25      W      25         18.066
LGA    E      26      E      26         17.517
LGA    N      27      N      27         17.017
LGA    E      28      E      28         20.740
LGA    N      29      N      29         21.790
LGA    G      30      G      30         20.322
LGA    A      31      A      31         15.033
LGA    P      32      P      32         11.988
LGA    E      33      E      33          7.672
LGA    T      34      T      34          5.588
LGA    K      35      K      35          3.409
LGA    V      36      V      36          2.307
LGA    D      37      D      37          0.829
LGA    V      38      V      38          0.300
LGA    N      39      N      39          1.152
LGA    F      40      F      40          1.096
LGA    Q      41      Q      41          1.427
LGA    L      42      L      42          1.366
LGA    L      43      L      43          1.180
LGA    Q      44      Q      44          2.632
LGA    H      45      H      45          3.664
LGA    D      46      D      46          2.649
LGA    Q      47      Q      47          6.057
LGA    E      48      E      48          9.052
LGA    N      49      N      49          6.074
LGA    Q      50      Q      50          1.774
LGA    V      51      V      51          0.914
LGA    T      52      T      52          3.989
LGA    S      53      S      53          1.409
LGA    L      54      L      54          2.108
LGA    I      55      I      55          1.553
LGA    V      56      V      56          0.795
LGA    I      57      I      57          1.065
LGA    L      58      L      58          1.292
LGA    S      59      S      59          1.726
LGA    F      60      F      60          2.859
LGA    M      61      M      61          2.191
LGA    I      62      I      62          1.149
LGA    V      63      V      63          1.035
LGA    F      64      F      64          1.973
LGA    D      65      D      65          3.632
LGA    K      66      K      66          6.396
LGA    F      67      F      67          3.632
LGA    V      68      V      68          2.771
LGA    I      69      I      69          1.381
LGA    S      70      S      70          0.942
LGA    G      71      G      71          3.941
LGA    T      72      T      72          2.705
LGA    I      73      I      73          2.390
LGA    S      74      S      74          2.422
LGA    Q      75      Q      75          7.654
LGA    V      76      V      76         12.650
LGA    N      77      N      77         12.225
LGA    H      78      H      78         16.240
LGA    I      79      I      79         22.937
LGA    D      80      D      80         24.318
LGA    G      81      G      81         26.561
LGA    R      82      R      82         30.559
LGA    I      83      I      83         33.698
LGA    V      84      V      84         32.350
LGA    N      85      N      85         35.301
LGA    E      86      E      86         33.851
LGA    P      87      P      87         30.835
LGA    S      88      S      88         37.170
LGA    E      89      E      89         39.636
LGA    L      90      L      90         35.011
LGA    N      91      N      91         37.477
LGA    Q      92      Q      92         33.972
LGA    E      93      E      93         31.474
LGA    E      94      E      94         29.694
LGA    V      95      V      95         26.079
LGA    E      96      E      96         22.800
LGA    T      97      T      97         21.550
LGA    L      98      L      98         19.137
LGA    A      99      A      99         15.069
LGA    R     100      R     100         12.552
LGA    P     101      P     101         10.190
LGA    C     102      C     102          7.320
LGA    L     103      L     103          7.048
LGA    N     104      N     104          4.326
LGA    M     105      M     105          3.638
LGA    L     106      L     106          4.799
LGA    N     107      N     107          5.250
LGA    R     108      R     108          7.610
LGA    L     109      L     109         10.942
LGA    T     110      T     110         13.067
LGA    Y     111      Y     111         16.822
LGA    E     112      E     112         22.927
LGA    V     113      V     113         25.635
LGA    T     114      T     114         29.902
LGA    E     115      E     115         33.309
LGA    I     116      I     116         33.313
LGA    A     117      A     117         36.611
LGA    L     118      L     118         37.262
LGA    D     119      D     119         40.572
LGA    L     120      L     120         41.565
LGA    P     121      P     121         37.239
LGA    G     122      G     122         30.596
LGA    I     123      I     123         27.556
LGA    N     124      N     124         25.262
LGA    L     125      L     125         20.545
LGA    E     126      E     126         19.057
LGA    F     127      F     127         14.473

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     37    2.21    25.400    22.987     1.603

LGA_LOCAL      RMSD =  2.208  Number of atoms =   37  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.861  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 17.928  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.144397 * X  +  -0.814408 * Y  +  -0.562040 * Z  +  14.083389
  Y_new =   0.986267 * X  +  -0.164467 * Y  +  -0.015072 * Z  +  28.545418
  Z_new =  -0.080162 * X  +  -0.556498 * Y  +   0.826973 * Z  +   8.397239 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.592329    2.549264  [ DEG:   -33.9379    146.0621 ]
  Theta =   0.080249    3.061344  [ DEG:     4.5979    175.4021 ]
  Phi   =   1.716171   -1.425421  [ DEG:    98.3294    -81.6706 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_3                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_3.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   37   2.21  22.987    17.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_3
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1      17.208  16.534   4.308  1.00  0.00              
ATOM      2  CA  ASN     2      18.937  18.845   1.247  1.00  0.00              
ATOM      3  CA  ALA     3      18.541  20.063  -2.188  1.00  0.00              
ATOM      4  CA  MET     4      17.616  19.102   1.416  1.00  0.00              
ATOM      5  CA  ASN     5      14.674  21.568   1.422  1.00  0.00              
ATOM      6  CA  LEU     6      13.296  20.288  -1.897  1.00  0.00              
ATOM      7  CA  LYS     7      13.516  16.651  -0.686  1.00  0.00              
ATOM      8  CA  ARG     8      11.711  17.360   2.618  1.00  0.00              
ATOM      9  CA  GLU     9       8.819  19.128   0.893  1.00  0.00              
ATOM     10  CA  GLN    10       7.633  16.616  -1.729  1.00  0.00              
ATOM     11  CA  GLU    11       4.097  17.969  -1.854  1.00  0.00              
ATOM     12  CA  PHE    12       5.220  21.589  -2.387  1.00  0.00              
ATOM     13  CA  VAL    13       7.676  20.512  -5.093  1.00  0.00              
ATOM     14  CA  SER    14       5.047  18.489  -6.993  1.00  0.00              
ATOM     15  CA  GLN    15       2.638  21.485  -7.104  1.00  0.00              
ATOM     16  CA  TYR    16       5.306  23.891  -8.393  1.00  0.00              
ATOM     17  CA  HIS    17       7.502  21.558 -10.481  1.00  0.00              
ATOM     18  CA  PHE    18      10.935  21.211  -8.804  1.00  0.00              
ATOM     19  CA  ASP    19      13.342  18.446  -9.614  1.00  0.00              
ATOM     20  CA  ALA    20      14.923  16.807  -6.592  1.00  0.00              
ATOM     21  CA  ARG    21      18.249  15.758  -8.049  1.00  0.00              
ATOM     22  CA  ASN    22      19.164  19.134  -9.612  1.00  0.00              
ATOM     23  CA  PHE    23      17.678  21.879  -7.520  1.00  0.00              
ATOM     24  CA  GLU    24      16.978  24.525 -10.135  1.00  0.00              
ATOM     25  CA  TRP    25      13.564  26.179 -10.015  1.00  0.00              
ATOM     26  CA  GLU    26      14.496  29.513 -11.693  1.00  0.00              
ATOM     27  CA  ASN    27      11.734  32.056 -12.066  1.00  0.00              
ATOM     28  CA  GLU    28      12.417  33.172 -15.700  1.00  0.00              
ATOM     29  CA  ASN    29      13.713  36.622 -15.055  1.00  0.00              
ATOM     30  CA  GLY    30      15.837  35.806 -12.046  1.00  0.00              
ATOM     31  CA  ALA    31      13.921  37.759  -9.409  1.00  0.00              
ATOM     32  CA  PRO    32      12.488  35.436  -6.796  1.00  0.00              
ATOM     33  CA  GLU    33       9.962  37.673  -4.961  1.00  0.00              
ATOM     34  CA  THR    34      10.773  37.438  -1.328  1.00  0.00              
ATOM     35  CA  LYS    35       8.057  37.980   1.132  1.00  0.00              
ATOM     36  CA  VAL    36       8.982  37.813   4.728  1.00  0.00              
ATOM     37  CA  ASP    37       6.376  37.142   7.370  1.00  0.00              
ATOM     38  CA  VAL    38       7.311  37.344  11.020  1.00  0.00              
ATOM     39  CA  ASN    39       5.116  35.895  13.550  1.00  0.00              
ATOM     40  CA  PHE    40       5.912  36.428  17.196  1.00  0.00              
ATOM     41  CA  GLN    41       4.427  34.149  19.816  1.00  0.00              
ATOM     42  CA  LEU    42       4.599  35.099  23.361  1.00  0.00              
ATOM     43  CA  LEU    43       4.032  32.523  26.005  1.00  0.00              
ATOM     44  CA  GLN    44       2.410  33.771  29.218  1.00  0.00              
ATOM     45  CA  HIS    45       2.133  35.946  32.282  1.00  0.00              
ATOM     46  CA  ASP    46       5.224  34.646  34.179  1.00  0.00              
ATOM     47  CA  GLN    47       7.224  34.922  30.964  1.00  0.00              
ATOM     48  CA  GLU    48       6.523  38.688  30.631  1.00  0.00              
ATOM     49  CA  ASN    49       7.903  39.504  34.035  1.00  0.00              
ATOM     50  CA  GLN    50      10.984  37.386  33.877  1.00  0.00              
ATOM     51  CA  VAL    51      11.448  37.271  30.043  1.00  0.00              
ATOM     52  CA  THR    52      10.921  33.572  29.599  1.00  0.00              
ATOM     53  CA  SER    53       9.397  32.185  26.459  1.00  0.00              
ATOM     54  CA  LEU    54       9.412  34.062  23.183  1.00  0.00              
ATOM     55  CA  ILE    55       8.717  32.139  20.133  1.00  0.00              
ATOM     56  CA  VAL    56       9.550  33.544  16.787  1.00  0.00              
ATOM     57  CA  ILE    57       7.995  32.131  13.747  1.00  0.00              
ATOM     58  CA  LEU    58       9.489  33.078  10.444  1.00  0.00              
ATOM     59  CA  SER    59       7.586  32.459   7.329  1.00  0.00              
ATOM     60  CA  PHE    60       9.422  33.042   4.059  1.00  0.00              
ATOM     61  CA  MET    61       7.294  33.083   0.919  1.00  0.00              
ATOM     62  CA  ILE    62       9.000  32.754  -2.378  1.00  0.00              
ATOM     63  CA  VAL    63       6.976  33.464  -5.457  1.00  0.00              
ATOM     64  CA  PHE    64       8.141  32.206  -8.812  1.00  0.00              
ATOM     65  CA  ASP    65       6.024  32.852 -11.880  1.00  0.00              
ATOM     66  CA  LYS    66       3.070  30.582 -10.937  1.00  0.00              
ATOM     67  CA  PHE    67       4.851  28.414  -8.410  1.00  0.00              
ATOM     68  CA  VAL    68       4.675  29.220  -4.690  1.00  0.00              
ATOM     69  CA  ILE    69       7.525  28.213  -2.451  1.00  0.00              
ATOM     70  CA  SER    70       7.006  28.278   1.256  1.00  0.00              
ATOM     71  CA  GLY    71       9.945  28.296   3.605  1.00  0.00              
ATOM     72  CA  THR    72       9.367  28.082   7.287  1.00  0.00              
ATOM     73  CA  ILE    73      11.940  29.160   9.534  1.00  0.00              
ATOM     74  CA  SER    74      11.536  27.652  12.832  1.00  0.00              
ATOM     75  CA  GLN    75      10.950  24.275  11.143  1.00  0.00              
ATOM     76  CA  VAL    76      14.274  24.651   9.323  1.00  0.00              
ATOM     77  CA  ASN    77      16.045  25.386  12.592  1.00  0.00              
ATOM     78  CA  HIS    78      14.478  22.295  14.167  1.00  0.00              
ATOM     79  CA  ILE    79      15.588  20.168  11.186  1.00  0.00              
ATOM     80  CA  ASP    80      19.119  21.608  11.565  1.00  0.00              
ATOM     81  CA  GLY    81      19.252  20.364  15.192  1.00  0.00              
ATOM     82  CA  ARG    82      18.350  16.917  13.904  1.00  0.00              
ATOM     83  CA  ILE    83      20.998  16.817  11.102  1.00  0.00              
ATOM     84  CA  VAL    84      23.834  17.892  13.469  1.00  0.00              
ATOM     85  CA  ASN    85      23.004  15.325  16.186  1.00  0.00              
ATOM     86  CA  GLU    86      23.050  16.406  19.776  1.00  0.00              
ATOM     87  CA  PRO    87      25.691  19.053  20.127  1.00  0.00              
ATOM     88  CA  SER    88      28.318  16.934  21.767  1.00  0.00              
ATOM     89  CA  GLU    89      28.217  14.194  19.183  1.00  0.00              
ATOM     90  CA  LEU    90      28.468  16.394  16.109  1.00  0.00              
ATOM     91  CA  ASN    91      31.887  16.648  14.486  1.00  0.00              
ATOM     92  CA  GLN    92      33.344  20.073  13.842  1.00  0.00              
ATOM     93  CA  GLU    93      32.764  19.825  10.124  1.00  0.00              
ATOM     94  CA  GLU    94      29.098  18.871  10.624  1.00  0.00              
ATOM     95  CA  VAL    95      28.522  21.731  12.986  1.00  0.00              
ATOM     96  CA  GLU    96      30.076  24.230  10.651  1.00  0.00              
ATOM     97  CA  THR    97      27.932  22.997   7.720  1.00  0.00              
ATOM     98  CA  LEU    98      24.806  23.177   9.878  1.00  0.00              
ATOM     99  CA  ALA    99      25.305  26.684  11.331  1.00  0.00              
ATOM    100  CA  ARG   100      25.888  27.790   7.766  1.00  0.00              
ATOM    101  CA  PRO   101      22.852  26.425   5.916  1.00  0.00              
ATOM    102  CA  CYS   102      20.501  27.834   8.547  1.00  0.00              
ATOM    103  CA  LEU   103      22.147  31.230   8.491  1.00  0.00              
ATOM    104  CA  ASN   104      21.900  31.237   4.667  1.00  0.00              
ATOM    105  CA  MET   105      18.186  30.592   4.658  1.00  0.00              
ATOM    106  CA  LEU   106      17.535  33.293   7.236  1.00  0.00              
ATOM    107  CA  ASN   107      19.647  35.739   5.181  1.00  0.00              
ATOM    108  CA  ARG   108      17.557  35.160   2.046  1.00  0.00              
ATOM    109  CA  LEU   109      14.503  36.175   4.067  1.00  0.00              
ATOM    110  CA  THR   110      16.104  39.125   5.957  1.00  0.00              
ATOM    111  CA  TYR   111      15.338  39.326   9.659  1.00  0.00              
ATOM    112  CA  GLU   112      16.488  42.251  11.834  1.00  0.00              
ATOM    113  CA  VAL   113      17.391  41.088  15.338  1.00  0.00              
ATOM    114  CA  THR   114      17.523  44.286  17.300  1.00  0.00              
ATOM    115  CA  GLU   115      18.003  42.797  20.784  1.00  0.00              
ATOM    116  CA  ILE   116      17.843  39.042  20.912  1.00  0.00              
ATOM    117  CA  ALA   117      16.959  37.460  24.295  1.00  0.00              
ATOM    118  CA  LEU   118      17.078  33.717  24.616  1.00  0.00              
ATOM    119  CA  ASP   119      14.056  32.790  26.684  1.00  0.00              
ATOM    120  CA  LEU   120      13.642  29.743  28.788  1.00  0.00              
ATOM    121  CA  PRO   121      12.405  27.107  26.325  1.00  0.00              
ATOM    122  CA  GLY   122      15.123  28.227  23.877  1.00  0.00              
ATOM    123  CA  ILE   123      13.539  30.504  21.326  1.00  0.00              
ATOM    124  CA  ASN   124      13.926  34.122  21.711  1.00  0.00              
ATOM    125  CA  LEU   125      13.298  36.469  18.903  1.00  0.00              
ATOM    126  CA  GLU   126      14.218  39.971  19.115  1.00  0.00              
ATOM    127  CA  PHE   127      13.454  42.813  16.755  1.00  0.00              
TER                                                                             
END
