
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS599_4
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_4.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        83 - 118         4.89    22.71
  LONGEST_CONTINUOUS_SEGMENT:    36        84 - 119         4.75    23.42
  LCS_AVERAGE:     21.27

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        87 - 106         1.96    21.94
  LONGEST_CONTINUOUS_SEGMENT:    20        88 - 107         1.97    22.63
  LCS_AVERAGE:      9.15

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        87 - 100         0.73    21.19
  LONGEST_CONTINUOUS_SEGMENT:    14        88 - 101         0.91    21.10
  LCS_AVERAGE:      5.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    3   10     1    3    3    3    3    4    4    5    7    8    9    9    9   12   13   14   16   19   26   28 
LCS_GDT     M       4     M       4      3    3   10     3    3    3    3    3    4    5    6    7    8   10   11   19   20   24   26   29   33   36   36 
LCS_GDT     N       5     N       5      3    3   10     3    3    3    5    5    5    5    6    7    8   10   19   19   20   24   26   30   33   36   36 
LCS_GDT     L       6     L       6      3    3   10     3    3    3    5    5    5    6    6    7    8   10   19   19   20   24   26   29   33   36   36 
LCS_GDT     K       7     K       7      3    5   10     3    3    3    4    5    5    6    6    7    8    9    9   14   16   18   24   24   29   30   35 
LCS_GDT     R       8     R       8      4    5   10     3    3    4    5    5    7    9   11   13   17   20   23   26   27   30   33   35   36   37   38 
LCS_GDT     E       9     E       9      4    5   10     3    3    4    5    5    7    9   11   13   17   18   23   26   27   30   33   35   36   37   38 
LCS_GDT     Q      10     Q      10      4    5   11     3    3    4    5    5    7    9   11   13   14   18   22   24   26   28   31   34   36   37   38 
LCS_GDT     E      11     E      11      4    5   12     3    3    4    4    5    7    8   13   15   17   21   23   26   28   30   33   35   36   37   38 
LCS_GDT     F      12     F      12      3    3   17     3    3    3    3    5    7    9   12   15   17   21   23   26   28   30   33   35   36   37   38 
LCS_GDT     V      13     V      13      3    4   17     3    3    4    4    4    5    8   12   13   15   17   21   26   28   30   33   35   36   37   38 
LCS_GDT     S      14     S      14      3    4   17     3    3    4    4    4    5    8   10   13   15   17   21   23   25   28   31   35   36   37   38 
LCS_GDT     Q      15     Q      15      5    8   17     3    4    5    7    7    8   11   13   14   19   21   23   26   28   30   33   35   36   37   38 
LCS_GDT     Y      16     Y      16      5    8   17     3    4    5    7    7    8    9   12   13   15   17   20   26   28   30   33   35   36   37   38 
LCS_GDT     H      17     H      17      5    8   17     3    4    5    7    7    8    9   11   11   15   17   20   20   22   26   32   35   36   37   38 
LCS_GDT     F      18     F      18      5    8   17     3    4    5    7    7    8    9    9   11   12   14   18   21   24   27   34   36   38   43   48 
LCS_GDT     D      19     D      19      5    8   17     3    4    5    7    7    8   10   13   14   19   26   30   32   34   38   44   49   54   56   58 
LCS_GDT     A      20     A      20      5    8   17     3    4    5    7    7    8   12   16   20   26   33   36   40   45   48   50   51   54   56   60 
LCS_GDT     R      21     R      21      5    8   17     4    4    5    7    8   17   20   21   23   30   34   37   40   45   48   50   51   54   56   60 
LCS_GDT     N      22     N      22      4    8   17     4    4    4    5   11   17   20   21   23   26   33   36   40   45   48   50   51   54   56   60 
LCS_GDT     F      23     F      23      4    4   17     4    4   13   14   15   17   20   21   26   31   35   38   40   45   48   50   51   54   56   60 
LCS_GDT     E      24     E      24      4    4   17     4    4   14   14   15   17   20   21   23   30   33   37   40   45   48   50   51   54   56   60 
LCS_GDT     W      25     W      25      3    7   27     3    3    4    4    7   17   19   19   22   24   27   31   38   42   46   50   51   54   56   58 
LCS_GDT     E      26     E      26      6    7   27     3    4    6    6    6    8   10   12   17   19   27   31   32   34   35   44   49   54   56   58 
LCS_GDT     N      27     N      27      6    7   27     3    5    6    6    6    8   10   19   22   24   27   31   32   36   42   44   51   54   56   58 
LCS_GDT     E      28     E      28      6    7   27     3    5    6    6    6    8    9   17   20   23   27   31   32   32   33   39   41   50   52   57 
LCS_GDT     N      29     N      29      6    9   27     3    5    6    6    8   11   14   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     G      30     G      30      6    9   27     3    5    6    7    8   11   14   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     A      31     A      31      6    9   27     3    5    6    7   10   14   14   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     P      32     P      32      5    9   27     3    5    5    7    8   11   14   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     E      33     E      33      6   13   27     3    5    7    7   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     T      34     T      34      6   13   27     3    5    7    7   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     K      35     K      35      6   13   27     4    5    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     V      36     V      36      7   13   27     4    5    8   11   11   14   15   17   20   22   23   23   26   27   30   33   34   36   37   38 
LCS_GDT     D      37     D      37      7   13   27     3    6    8   11   11   14   15   16   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     V      38     V      38      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     N      39     N      39      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     F      40     F      40      7   13   27     3    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     Q      41     Q      41      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     L      42     L      42      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     L      43     L      43      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     Q      44     Q      44      7   13   27     4    6    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     H      45     H      45      4   13   27     3    3    7    8   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     D      46     D      46      5   13   27     4    5    8   11   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     Q      47     Q      47      5   13   27     4    5    5    9   11   14   15   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     E      48     E      48      5    5   27     4    5    5    5    5    5   10   14   19   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     N      49     N      49      5    5   27     4    5    5    5    6    7   12   17   20   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     Q      50     Q      50      5    7   27     4    5    5    6    7    7   11   16   19   22   23   23   26   28   30   33   35   36   37   38 
LCS_GDT     V      51     V      51      4    7   27     4    4    5    6    7    7    8   11   12   15   17   21   23   27   29   33   35   36   37   38 
LCS_GDT     T      52     T      52      4    7   27     4    4    5    6    7    7    8   10   11   11   14   17   20   22   25   32   35   36   37   38 
LCS_GDT     S      53     S      53      4    7   15     4    4    5    6    7    7    8   10   11   11   12   12   15   15   18   23   26   29   29   29 
LCS_GDT     L      54     L      54      4    7   25     3    3    4    6    7    7    8   10   11   11   16   21   22   24   25   28   28   28   30   33 
LCS_GDT     I      55     I      55      4    7   25     3    4    4    6    7    7    8   12   16   18   21   24   24   24   26   29   31   35   43   53 
LCS_GDT     V      56     V      56      9   14   25     4    6    9   10   12   13   14   16   19   21   21   24   24   28   29   31   34   53   56   60 
LCS_GDT     I      57     I      57      9   14   25     4    6    9   11   14   17   18   19   19   21   21   24   27   35   40   46   51   58   59   60 
LCS_GDT     L      58     L      58      9   14   25     4    6    9   10   12   15   17   19   19   21   21   24   27   35   40   50   55   58   59   60 
LCS_GDT     S      59     S      59      9   17   25     4    6    9   11   15   17   18   19   19   21   23   24   36   46   50   52   55   58   59   60 
LCS_GDT     F      60     F      60      9   17   25     3    6    9   11   15   17   18   19   19   21   21   25   36   48   50   52   55   58   59   60 
LCS_GDT     M      61     M      61      9   17   25     3    6    9   10   15   17   18   19   24   35   37   42   45   48   50   52   55   58   59   60 
LCS_GDT     I      62     I      62      9   17   25     3    6    9   11   15   17   18   19   20   26   31   39   45   48   50   52   55   58   59   60 
LCS_GDT     V      63     V      63      9   17   25     3    6    9   10   15   17   20   23   29   35   38   42   45   48   50   52   55   58   59   60 
LCS_GDT     F      64     F      64      9   17   25     3    6    9   11   15   17   18   19   21   27   31   38   43   48   50   52   55   58   59   60 
LCS_GDT     D      65     D      65      7   17   25     3    6    8   11   15   17   18   23   26   30   38   42   45   48   50   52   55   58   59   60 
LCS_GDT     K      66     K      66      6   17   25     3    6    9   11   15   17   24   27   30   34   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     F      67     F      67      6   17   25     3    6    8   13   21   23   25   27   31   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     V      68     V      68      6   17   25     3    6   10   17   21   23   25   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     I      69     I      69      6   17   25     3    6    8   10   21   23   25   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     S      70     S      70      6   17   25     3    7   11   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     G      71     G      71      6   17   25     3    6    9   14   21   23   27   30   32   34   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     T      72     T      72      5   17   25     3    4    6   14   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     I      73     I      73      5   17   25     3    6    9   12   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     S      74     S      74      5   17   31     3    4    9   10   15   17   22   29   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     Q      75     Q      75      5   17   31     3    4    7   11   14   17   19   29   31   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     V      76     V      76      3    3   31     3    3   13   14   16   17   20   22   27   28   32   37   43   48   50   52   55   58   59   60 
LCS_GDT     N      77     N      77      3    3   31     3    3    3    4   13   17   19   20   22   24   29   34   39   43   48   50   55   58   59   60 
LCS_GDT     H      78     H      78      3    3   31     3    3    3    4   14   17   19   20   22   23   27   34   39   42   48   50   51   58   59   60 
LCS_GDT     I      79     I      79      4    5   31     3    4    4    5   13   17   19   19   22   23   27   34   39   42   48   50   55   58   59   60 
LCS_GDT     D      80     D      80      4    5   31     3    4    4    5    5   10   12   15   16   20   22   23   23   27   33   35   41   46   52   57 
LCS_GDT     G      81     G      81      4    5   31     3    4    4    5    5    5    5    7    8    9    9   12   15   20   24   24   28   34   39   47 
LCS_GDT     R      82     R      82      4    5   32     3    4    4    8   12   14   19   19   20   21   27   31   37   39   43   47   53   58   59   60 
LCS_GDT     I      83     I      83      7   10   36     4    6    6    8    9   11   12   13   16   18   22   31   33   38   44   50   55   58   59   60 
LCS_GDT     V      84     V      84      7   10   36     3    6    6    8    9   11   12   15   19   24   28   32   40   48   50   52   55   58   59   60 
LCS_GDT     N      85     N      85      7   17   36     3    5    6    8    9   11   12   15   22   24   30   38   45   48   50   52   55   58   59   60 
LCS_GDT     E      86     E      86      7   19   36     4    6    7   14   16   19   25   29   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     P      87     P      87     14   20   36     4    6    8   14   17   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     S      88     S      88     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E      89     E      89     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L      90     L      90     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     N      91     N      91     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     Q      92     Q      92     14   20   36    11   13   14   17   21   23   27   30   32   34   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E      93     E      93     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E      94     E      94     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     V      95     V      95     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E      96     E      96     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     T      97     T      97     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L      98     L      98     14   20   36    11   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     A      99     A      99     14   20   36    11   13   14   15   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     R     100     R     100     14   20   36    10   13   14   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     P     101     P     101     14   20   36    10   12   12   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     C     102     C     102     13   20   36    10   12   12   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L     103     L     103     13   20   36    10   12   12   17   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     N     104     N     104     13   20   36    10   12   12   15   21   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     M     105     M     105     13   20   36    10   12   12   14   19   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L     106     L     106     13   20   36    10   12   12   14   17   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     N     107     N     107     13   20   36    10   12   12   14   17   23   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     R     108     R     108     13   18   36    10   12   12   14   17   22   27   30   32   34   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L     109     L     109     13   18   36    10   12   12   14   17   22   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     T     110     T     110     13   18   36    10   12   12   14   17   22   27   30   32   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     Y     111     Y     111      3   15   36     3    4    5    8   15   18   22   25   30   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E     112     E     112      4    5   36     3    4    5    6    6    8   11   22   26   33   38   42   45   48   50   52   55   58   59   60 
LCS_GDT     V     113     V     113      4    5   36     3    4    4    5    6    7   11   12   25   31   36   38   41   46   49   52   54   57   59   60 
LCS_GDT     T     114     T     114      4    5   36     3    4    4    5    6    8   11   20   29   33   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     E     115     E     115      4    5   36     3    4    4    5    6    8   11   12   25   28   32   39   44   47   50   52   55   58   59   60 
LCS_GDT     I     116     I     116      3    5   36     3    4    4   11   15   18   22   26   30   34   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     A     117     A     117      4    4   36     3    4    6   11   16   20   23   26   30   35   39   42   45   48   50   52   55   58   59   60 
LCS_GDT     L     118     L     118      4    5   36     3    4    4    5   13   13   18   21   25   29   31   39   40   43   46   49   52   54   57   60 
LCS_GDT     D     119     D     119      4    5   36     3    4    4    4    5   10   16   21   25   29   31   38   40   42   45   48   52   53   57   60 
LCS_GDT     L     120     L     120      4    5   35     3    4    4    4    5    6    8   10   13   16   17   19   22   23   26   28   30   40   48   50 
LCS_GDT     P     121     P     121      3    7   13     3    3    3    4    6    7    8   10   12   13   14   18   22   22   26   28   30   38   48   50 
LCS_GDT     G     122     G     122      5    7   13     4    5    5    6    6    7    8    8   12   12   14   16   22   23   39   41   44   50   54   58 
LCS_GDT     I     123     I     123      5    7   13     4    5    5    6    6    7    8   10   12   15   17   19   22   23   26   28   30   34   48   50 
LCS_GDT     N     124     N     124      5    7   13     4    5    5    6    6    7    8   10   12   15   17   19   22   23   25   28   30   34   43   50 
LCS_GDT     L     125     L     125      5    7   13     4    5    5    6    6    7    8   10   12   13   16   18   20   22   25   27   30   30   31   34 
LCS_GDT     E     126     E     126      5    7   13     1    5    5    6    6    7    8   10   12   15   17   19   22   23   25   28   30   34   38   42 
LCS_GDT     F     127     F     127      5    7   13     0    3    5    6    6    7    8   10   12   13   16   18   20   22   25   26   30   30   30   36 
LCS_AVERAGE  LCS_A:  11.96  (   5.48    9.15   21.27 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     14     17     21     23     27     30     32     35     39     42     45     48     50     52     55     58     59     60 
GDT PERCENT_CA   8.80  10.40  11.20  13.60  16.80  18.40  21.60  24.00  25.60  28.00  31.20  33.60  36.00  38.40  40.00  41.60  44.00  46.40  47.20  48.00
GDT RMS_LOCAL    0.20   0.37   0.72   1.43   1.71   1.88   2.35   2.57   2.78   3.53   3.57   3.88   4.21   4.53   4.71   4.90   5.47   5.92   5.96   6.23
GDT RMS_ALL_CA  21.09  21.01  20.81  21.95  21.73  21.83  21.98  21.98  21.81  22.03  21.72  22.04  22.08  22.02  22.04  22.05  21.59  21.25  21.25  21.41

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         45.718
LGA    M       4      M       4         45.054
LGA    N       5      N       5         49.030
LGA    L       6      L       6         45.357
LGA    K       7      K       7         44.378
LGA    R       8      R       8         43.440
LGA    E       9      E       9         44.269
LGA    Q      10      Q      10         44.872
LGA    E      11      E      11         42.924
LGA    F      12      F      12         36.544
LGA    V      13      V      13         32.786
LGA    S      14      S      14         34.216
LGA    Q      15      Q      15         31.151
LGA    Y      16      Y      16         28.450
LGA    H      17      H      17         25.812
LGA    F      18      F      18         21.640
LGA    D      19      D      19         18.371
LGA    A      20      A      20         14.970
LGA    R      21      R      21         12.442
LGA    N      22      N      22         15.014
LGA    F      23      F      23         13.043
LGA    E      24      E      24         15.899
LGA    W      25      W      25         18.978
LGA    E      26      E      26         19.554
LGA    N      27      N      27         20.116
LGA    E      28      E      28         23.186
LGA    N      29      N      29         24.089
LGA    G      30      G      30         22.514
LGA    A      31      A      31         22.320
LGA    P      32      P      32         24.087
LGA    E      33      E      33         22.235
LGA    T      34      T      34         24.060
LGA    K      35      K      35         22.203
LGA    V      36      V      36         25.073
LGA    D      37      D      37         23.467
LGA    V      38      V      38         26.550
LGA    N      39      N      39         23.965
LGA    F      40      F      40         27.223
LGA    Q      41      Q      41         24.890
LGA    L      42      L      42         29.358
LGA    L      43      L      43         27.652
LGA    Q      44      Q      44         32.617
LGA    H      45      H      45         35.542
LGA    D      46      D      46         40.969
LGA    Q      47      Q      47         44.061
LGA    E      48      E      48         42.406
LGA    N      49      N      49         42.182
LGA    Q      50      Q      50         44.083
LGA    V      51      V      51         37.643
LGA    T      52      T      52         36.052
LGA    S      53      S      53         30.562
LGA    L      54      L      54         24.806
LGA    I      55      I      55         19.641
LGA    V      56      V      56         15.764
LGA    I      57      I      57         13.176
LGA    L      58      L      58         12.066
LGA    S      59      S      59         10.370
LGA    F      60      F      60         10.040
LGA    M      61      M      61          7.944
LGA    I      62      I      62         10.327
LGA    V      63      V      63          9.344
LGA    F      64      F      64         12.693
LGA    D      65      D      65         12.270
LGA    K      66      K      66          8.361
LGA    F      67      F      67          5.480
LGA    V      68      V      68          3.517
LGA    I      69      I      69          3.523
LGA    S      70      S      70          1.557
LGA    G      71      G      71          3.447
LGA    T      72      T      72          3.062
LGA    I      73      I      73          2.871
LGA    S      74      S      74          5.362
LGA    Q      75      Q      75          5.965
LGA    V      76      V      76          8.724
LGA    N      77      N      77         11.025
LGA    H      78      H      78         12.346
LGA    I      79      I      79         12.232
LGA    D      80      D      80         15.567
LGA    G      81      G      81         17.622
LGA    R      82      R      82         13.416
LGA    I      83      I      83         12.480
LGA    V      84      V      84          9.079
LGA    N      85      N      85          8.185
LGA    E      86      E      86          5.308
LGA    P      87      P      87          3.116
LGA    S      88      S      88          1.112
LGA    E      89      E      89          3.028
LGA    L      90      L      90          1.585
LGA    N      91      N      91          2.710
LGA    Q      92      Q      92          2.637
LGA    E      93      E      93          1.829
LGA    E      94      E      94          0.715
LGA    V      95      V      95          0.751
LGA    E      96      E      96          2.082
LGA    T      97      T      97          1.474
LGA    L      98      L      98          2.465
LGA    A      99      A      99          3.415
LGA    R     100      R     100          3.094
LGA    P     101      P     101          2.881
LGA    C     102      C     102          1.952
LGA    L     103      L     103          1.265
LGA    N     104      N     104          0.694
LGA    M     105      M     105          1.890
LGA    L     106      L     106          1.761
LGA    N     107      N     107          2.587
LGA    R     108      R     108          3.470
LGA    L     109      L     109          3.480
LGA    T     110      T     110          3.892
LGA    Y     111      Y     111          6.850
LGA    E     112      E     112          8.471
LGA    V     113      V     113          8.943
LGA    T     114      T     114          8.587
LGA    E     115      E     115         11.250
LGA    I     116      I     116          7.790
LGA    A     117      A     117          6.787
LGA    L     118      L     118         11.401
LGA    D     119      D     119         14.940
LGA    L     120      L     120         21.316
LGA    P     121      P     121         22.632
LGA    G     122      G     122         17.884
LGA    I     123      I     123         19.833
LGA    N     124      N     124         19.858
LGA    L     125      L     125         22.055
LGA    E     126      E     126         21.312
LGA    F     127      F     127         22.090

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     30    2.57    22.400    19.416     1.125

LGA_LOCAL      RMSD =  2.567  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.042  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 16.621  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.316992 * X  +  -0.030573 * Y  +   0.947935 * Z  +   3.711987
  Y_new =   0.908200 * X  +   0.278218 * Y  +   0.312678 * Z  +  28.684401
  Z_new =  -0.273292 * X  +   0.960031 * Y  +  -0.060426 * Z  +  -0.734111 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.633655   -1.507937  [ DEG:    93.6016    -86.3984 ]
  Theta =   0.276814    2.864779  [ DEG:    15.8603    164.1397 ]
  Phi   =   1.906610   -1.234983  [ DEG:   109.2407    -70.7593 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_4                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_4.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   30   2.57  19.416    16.62
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_4
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1      -5.413  13.578  -4.631  1.00  0.00              
ATOM      2  CA  ASN     2      -6.693  16.892  -4.109  1.00  0.00              
ATOM      3  CA  ALA     3      -5.992  20.376  -4.625  1.00  0.00              
ATOM      4  CA  MET     4      -4.177  19.404  -8.289  1.00  0.00              
ATOM      5  CA  ASN     5      -7.328  17.531  -9.073  1.00  0.00              
ATOM      6  CA  LEU     6      -9.784  20.355  -8.156  1.00  0.00              
ATOM      7  CA  LYS     7      -7.843  23.030  -9.982  1.00  0.00              
ATOM      8  CA  ARG     8      -7.114  21.062 -13.095  1.00  0.00              
ATOM      9  CA  GLU     9     -10.719  19.978 -13.585  1.00  0.00              
ATOM     10  CA  GLN    10     -11.585  21.502 -16.894  1.00  0.00              
ATOM     11  CA  GLU    11     -15.044  22.480 -15.639  1.00  0.00              
ATOM     12  CA  PHE    12     -13.658  24.159 -12.512  1.00  0.00              
ATOM     13  CA  VAL    13     -11.070  26.124 -14.473  1.00  0.00              
ATOM     14  CA  SER    14     -13.582  27.308 -17.082  1.00  0.00              
ATOM     15  CA  GLN    15     -16.199  28.172 -14.467  1.00  0.00              
ATOM     16  CA  TYR    16     -13.742  30.324 -12.525  1.00  0.00              
ATOM     17  CA  HIS    17     -11.624  32.133 -15.161  1.00  0.00              
ATOM     18  CA  PHE    18      -7.923  31.993 -14.449  1.00  0.00              
ATOM     19  CA  ASP    19      -5.321  33.698 -16.560  1.00  0.00              
ATOM     20  CA  ALA    20      -2.627  35.323 -14.353  1.00  0.00              
ATOM     21  CA  ARG    21      -0.520  36.851 -17.115  1.00  0.00              
ATOM     22  CA  ASN    22      -3.356  38.550 -19.060  1.00  0.00              
ATOM     23  CA  PHE    23      -5.949  39.625 -16.509  1.00  0.00              
ATOM     24  CA  GLU    24      -8.546  41.305 -18.648  1.00  0.00              
ATOM     25  CA  TRP    25      -9.778  44.542 -17.193  1.00  0.00              
ATOM     26  CA  GLU    26     -11.274  46.798 -19.646  1.00  0.00              
ATOM     27  CA  ASN    27     -14.056  49.057 -18.337  1.00  0.00              
ATOM     28  CA  GLU    28     -13.378  52.551 -19.762  1.00  0.00              
ATOM     29  CA  ASN    29     -12.561  51.449 -23.351  1.00  0.00              
ATOM     30  CA  GLY    30     -15.617  49.304 -23.664  1.00  0.00              
ATOM     31  CA  ALA    31     -13.908  45.918 -24.101  1.00  0.00              
ATOM     32  CA  PRO    32     -15.575  43.289 -21.982  1.00  0.00              
ATOM     33  CA  GLU    33     -14.425  43.120 -18.416  1.00  0.00              
ATOM     34  CA  THR    34     -13.236  39.579 -17.916  1.00  0.00              
ATOM     35  CA  LYS    35     -11.063  39.330 -14.823  1.00  0.00              
ATOM     36  CA  VAL    36     -11.728  36.067 -12.897  1.00  0.00              
ATOM     37  CA  ASP    37      -8.939  34.887 -10.676  1.00  0.00              
ATOM     38  CA  VAL    38      -8.842  31.340  -9.440  1.00  0.00              
ATOM     39  CA  ASN    39      -6.518  30.465  -6.632  1.00  0.00              
ATOM     40  CA  PHE    40      -5.757  26.842  -5.984  1.00  0.00              
ATOM     41  CA  GLN    41      -3.703  25.829  -2.915  1.00  0.00              
ATOM     42  CA  LEU    42      -1.779  22.718  -2.990  1.00  0.00              
ATOM     43  CA  LEU    43      -0.619  21.188   0.241  1.00  0.00              
ATOM     44  CA  GLN    44       1.172  17.890   0.177  1.00  0.00              
ATOM     45  CA  HIS    45      -0.545  15.513   2.536  1.00  0.00              
ATOM     46  CA  ASP    46       0.161  12.282   0.649  1.00  0.00              
ATOM     47  CA  GLN    47       3.723  13.312  -0.145  1.00  0.00              
ATOM     48  CA  GLU    48       4.393  14.071   3.562  1.00  0.00              
ATOM     49  CA  ASN    49       3.534  10.457   4.510  1.00  0.00              
ATOM     50  CA  GLN    50       6.022   9.374   1.795  1.00  0.00              
ATOM     51  CA  VAL    51       8.830  11.654   2.982  1.00  0.00              
ATOM     52  CA  THR    52       9.827  13.813   0.100  1.00  0.00              
ATOM     53  CA  SER    53      12.909  15.699   1.453  1.00  0.00              
ATOM     54  CA  LEU    54      13.090  16.995   4.962  1.00  0.00              
ATOM     55  CA  ILE    55      15.312  19.901   5.694  1.00  0.00              
ATOM     56  CA  VAL    56      15.238  21.009   9.365  1.00  0.00              
ATOM     57  CA  ILE    57      11.447  20.812   8.803  1.00  0.00              
ATOM     58  CA  LEU    58      10.419  22.094   5.420  1.00  0.00              
ATOM     59  CA  SER    59       6.881  22.409   4.489  1.00  0.00              
ATOM     60  CA  PHE    60       6.083  23.114   0.885  1.00  0.00              
ATOM     61  CA  MET    61       2.967  25.001  -0.174  1.00  0.00              
ATOM     62  CA  ILE    62       2.114  25.241  -3.743  1.00  0.00              
ATOM     63  CA  VAL    63      -0.011  27.981  -4.941  1.00  0.00              
ATOM     64  CA  PHE    64      -1.591  27.707  -8.348  1.00  0.00              
ATOM     65  CA  ASP    65      -2.346  30.798 -10.375  1.00  0.00              
ATOM     66  CA  LYS    66       0.749  30.649 -12.573  1.00  0.00              
ATOM     67  CA  PHE    67       3.003  28.553 -10.277  1.00  0.00              
ATOM     68  CA  VAL    68       3.991  29.917  -6.908  1.00  0.00              
ATOM     69  CA  ILE    69       6.122  27.977  -4.537  1.00  0.00              
ATOM     70  CA  SER    70       6.007  28.847  -0.922  1.00  0.00              
ATOM     71  CA  GLY    71       8.356  27.234   1.507  1.00  0.00              
ATOM     72  CA  THR    72       7.357  27.081   5.012  1.00  0.00              
ATOM     73  CA  ILE    73       9.725  26.549   7.567  1.00  0.00              
ATOM     74  CA  SER    74       8.545  24.914  10.466  1.00  0.00              
ATOM     75  CA  GLN    75      10.967  24.714  13.160  1.00  0.00              
ATOM     76  CA  VAL    76      12.175  28.133  11.970  1.00  0.00              
ATOM     77  CA  ASN    77       8.733  29.804  12.101  1.00  0.00              
ATOM     78  CA  HIS    78       8.028  28.594  15.579  1.00  0.00              
ATOM     79  CA  ILE    79      11.414  29.900  16.751  1.00  0.00              
ATOM     80  CA  ASP    80      10.852  33.305  15.105  1.00  0.00              
ATOM     81  CA  GLY    81       7.616  33.968  16.886  1.00  0.00              
ATOM     82  CA  ARG    82       9.162  33.068  20.256  1.00  0.00              
ATOM     83  CA  ILE    83      12.219  35.325  19.824  1.00  0.00              
ATOM     84  CA  VAL    84      10.120  38.282  18.737  1.00  0.00              
ATOM     85  CA  ASN    85       7.481  38.027  21.482  1.00  0.00              
ATOM     86  CA  GLU    86       4.359  39.167  19.911  1.00  0.00              
ATOM     87  CA  PRO    87       4.972  41.735  17.296  1.00  0.00              
ATOM     88  CA  SER    88       3.559  44.608  19.263  1.00  0.00              
ATOM     89  CA  GLU    89       5.955  44.262  22.144  1.00  0.00              
ATOM     90  CA  LEU    90       9.104  44.067  20.155  1.00  0.00              
ATOM     91  CA  ASN    91      11.305  47.019  19.339  1.00  0.00              
ATOM     92  CA  GLN    92      12.215  47.694  15.677  1.00  0.00              
ATOM     93  CA  GLU    93      15.770  46.557  16.218  1.00  0.00              
ATOM     94  CA  GLU    94      14.642  43.298  17.836  1.00  0.00              
ATOM     95  CA  VAL    95      12.251  42.603  14.995  1.00  0.00              
ATOM     96  CA  GLU    96      14.964  43.238  12.400  1.00  0.00              
ATOM     97  CA  THR    97      17.314  40.890  14.274  1.00  0.00              
ATOM     98  CA  LEU    98      14.536  38.268  14.321  1.00  0.00              
ATOM     99  CA  ALA    99      13.694  38.501  10.625  1.00  0.00              
ATOM    100  CA  ARG   100      17.407  38.055   9.840  1.00  0.00              
ATOM    101  CA  PRO   101      18.190  35.003  11.989  1.00  0.00              
ATOM    102  CA  CYS   102      15.017  33.423  10.490  1.00  0.00              
ATOM    103  CA  LEU   103      16.238  33.994   6.912  1.00  0.00              
ATOM    104  CA  ASN   104      19.550  32.379   7.949  1.00  0.00              
ATOM    105  CA  MET   105      17.645  29.372   9.306  1.00  0.00              
ATOM    106  CA  LEU   106      15.636  29.064   6.099  1.00  0.00              
ATOM    107  CA  ASN   107      18.833  29.184   4.097  1.00  0.00              
ATOM    108  CA  ARG   108      20.265  26.236   6.159  1.00  0.00              
ATOM    109  CA  LEU   109      17.048  24.360   5.497  1.00  0.00              
ATOM    110  CA  THR   110      16.951  24.924   1.745  1.00  0.00              
ATOM    111  CA  TYR   111      13.695  26.272   0.485  1.00  0.00              
ATOM    112  CA  GLU   112      12.226  26.376  -2.841  1.00  0.00              
ATOM    113  CA  VAL   113      10.395  29.269  -4.124  1.00  0.00              
ATOM    114  CA  THR   114       9.022  28.138  -7.519  1.00  0.00              
ATOM    115  CA  GLU   115       9.438  24.522  -7.305  1.00  0.00              
ATOM    116  CA  ILE   116      11.949  21.912  -6.457  1.00  0.00              
ATOM    117  CA  ALA   117      10.622  18.468  -5.664  1.00  0.00              
ATOM    118  CA  LEU   118      12.796  15.806  -4.128  1.00  0.00              
ATOM    119  CA  ASP   119      11.622  12.409  -5.513  1.00  0.00              
ATOM    120  CA  LEU   120      11.560   9.430  -3.233  1.00  0.00              
ATOM    121  CA  PRO   121      14.937   7.783  -3.754  1.00  0.00              
ATOM    122  CA  GLY   122      16.584  11.214  -3.588  1.00  0.00              
ATOM    123  CA  ILE   123      15.070  12.593  -0.332  1.00  0.00              
ATOM    124  CA  ASN   124      17.516  14.281   1.961  1.00  0.00              
ATOM    125  CA  LEU   125      16.975  14.197   5.513  1.00  0.00              
ATOM    126  CA  GLU   126      18.405  17.072   7.668  1.00  0.00              
ATOM    127  CA  PHE   127      17.508  17.285  11.696  1.00  0.00              
TER                                                                             
END
