
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS599_5
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_5.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        84 - 119         4.89    20.49
  LONGEST_CONTINUOUS_SEGMENT:    36        85 - 120         4.99    20.47
  LCS_AVERAGE:     19.95

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        56 - 74          1.55    22.50
  LONGEST_CONTINUOUS_SEGMENT:    19        88 - 106         1.97    20.11
  LONGEST_CONTINUOUS_SEGMENT:    19        93 - 111         1.97    20.06
  LONGEST_CONTINUOUS_SEGMENT:    19        94 - 112         1.85    19.98
  LCS_AVERAGE:      9.14

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        87 - 100         0.92    21.57
  LONGEST_CONTINUOUS_SEGMENT:    14        98 - 111         0.85    19.54
  LCS_AVERAGE:      5.98

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    3   10     3    3    3    3    3    5    9    9    9   13   13   14   15   17   19   21   25   27   31   33 
LCS_GDT     M       4     M       4      3    3   10     3    3    3    3    3    8    9   11   13   14   16   16   33   39   42   46   48   49   51   53 
LCS_GDT     N       5     N       5      3    3   10     3    3    4    6    9    9   10   12   13   14   17   24   29   38   42   46   48   49   51   53 
LCS_GDT     L       6     L       6      3    3   10     3    3    3    3    9    9   10   12   13   14   19   23   27   37   40   43   48   49   51   52 
LCS_GDT     K       7     K       7      3    3   10     3    4    5    6    9    9   10   13   15   22   23   24   27   31   37   43   44   47   48   52 
LCS_GDT     R       8     R       8      3    4   10     3    3    4    5    8   11   16   20   23   25   25   27   28   31   35   43   44   47   49   52 
LCS_GDT     E       9     E       9      3    4   10     3    3    4    5    5    5    6    6   10   11   11   23   27   29   31   32   34   36   39   47 
LCS_GDT     Q      10     Q      10      3    4   10     3    3    4    5    5    5    7    8   10   11   13   15   17   19   23   25   34   34   37   38 
LCS_GDT     E      11     E      11      3    4   18     3    3    4    5    5    5    6   14   15   16   17   18   21   23   25   26   29   30   32   36 
LCS_GDT     F      12     F      12      3    3   18     3    3    6    8   11   12   14   16   18   23   23   25   25   27   29   29   29   33   37   38 
LCS_GDT     V      13     V      13      4    4   18     3    3    4    4    4   11   14   16   19   23   23   26   27   28   29   29   29   33   38   41 
LCS_GDT     S      14     S      14      4    4   18     3    3    6    9   11   14   15   17   19   23   23   26   27   28   29   29   31   33   38   42 
LCS_GDT     Q      15     Q      15      5    7   18     3    4    8   10   11   14   16   17   21   23   24   26   27   28   29   32   34   35   38   42 
LCS_GDT     Y      16     Y      16      5    8   18     3    4    5    6    7   14   16   19   20   21   24   26   27   28   32   35   36   37   38   42 
LCS_GDT     H      17     H      17      5    8   18     3    5    5    7    8    9    9   16   18   18   20   24   25   27   30   31   36   36   37   41 
LCS_GDT     F      18     F      18      6    8   18     4    5    7    7    8    9    9   10   11   12   14   16   19   23   25   27   29   33   37   38 
LCS_GDT     D      19     D      19      6    8   18     4    5    7    7    8    9    9   10   11   12   14   16   19   23   25   27   29   33   37   38 
LCS_GDT     A      20     A      20      6    8   18     4    5    7    7    8    8    9   10   11   12   14   16   19   23   25   27   29   33   36   38 
LCS_GDT     R      21     R      21      6    8   18     4    5    7    7    8    9    9   10   11   12   14   15   18   20   24   27   29   33   37   38 
LCS_GDT     N      22     N      22      6    8   18     4    5    7    7    8    9    9   10   11   12   14   16   19   23   25   27   29   33   37   38 
LCS_GDT     F      23     F      23      6    8   18     4    5    7    7    8    9    9   10   11   12   14   15   17   20   21   23   27   33   37   38 
LCS_GDT     E      24     E      24      6    8   21     4    5    7    7    8    9    9   10   11   12   14   15   19   23   25   27   30   33   37   38 
LCS_GDT     W      25     W      25      3    7   22     3    3    3    3    4    6    8    9   10   12   14   17   23   28   28   30   31   33   37   38 
LCS_GDT     E      26     E      26      6    8   22     3    4    5    7    8   10   11   15   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     N      27     N      27      6    8   22     3    5    5    6    6    7   10   12   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     E      28     E      28      6    8   22     3    5    5    6    9   10   12   15   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     N      29     N      29      6    8   22     3    5    5    6    8   10   11   14   16   18   20   21   24   28   28   30   32   33   37   41 
LCS_GDT     G      30     G      30      6   10   22     3    5    5    6    8   10   11   14   16   18   20   21   24   28   28   30   31   33   37   41 
LCS_GDT     A      31     A      31      6   10   22     3    5    6    8    9   10   12   15   17   18   20   21   24   28   28   30   32   33   37   41 
LCS_GDT     P      32     P      32      3   10   22     3    4    5    8    9   11   12   15   17   18   20   21   24   28   28   30   32   33   37   41 
LCS_GDT     E      33     E      33      7   10   22     3    6    7    8    9   11   12   15   17   18   20   21   24   28   28   30   32   33   37   41 
LCS_GDT     T      34     T      34      7   10   22     4    6    7    7    9   12   12   14   17   18   20   21   24   28   28   30   32   33   37   41 
LCS_GDT     K      35     K      35      7   10   22     4    6    7    7    9   12   12   15   17   18   20   21   24   28   28   31   35   43   47   50 
LCS_GDT     V      36     V      36      7   10   22     4    6    7    8    9   12   12   14   17   18   24   27   28   30   32   41   45   46   49   53 
LCS_GDT     D      37     D      37      7   10   22     4    6   13   19   21   22   22   23   23   25   26   27   30   35   38   43   46   49   51   53 
LCS_GDT     V      38     V      38      7   10   22     3    7    7    8    9   12   12   15   20   24   25   27   31   38   42   46   48   49   51   53 
LCS_GDT     N      39     N      39      7   10   22     3    7    7    8    9   12   12   15   17   18   20   21   25   28   33   40   43   48   51   52 
LCS_GDT     F      40     F      40      7   10   22     5    7    7    8    9   12   12   15   17   18   20   21   24   28   28   30   32   34   37   45 
LCS_GDT     Q      41     Q      41      7   10   22     5    7    7    8    9   12   12   14   17   18   19   21   24   28   28   30   31   33   37   38 
LCS_GDT     L      42     L      42      7   10   22     5    7    7    8    9   12   12   15   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     L      43     L      43      7   10   22     5    7    7    8    9   12   12   15   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     Q      44     Q      44      7   10   22     5    7    7    8    9   10   12   15   17   18   20   21   24   28   28   30   31   33   37   38 
LCS_GDT     H      45     H      45      7   10   22     3    5    7    8    9    9   12   14   15   17   20   21   22   23   28   30   31   32   34   36 
LCS_GDT     D      46     D      46      5    5   22     4    5    5    5    5    5    6   11   12   14   16   17   18   20   23   26   29   31   34   36 
LCS_GDT     Q      47     Q      47      5    6   15     4    5    5    6    9    9   10   12   13   14   16   16   17   17   18   21   24   27   31   34 
LCS_GDT     E      48     E      48      5    6   13     4    5    5    5    6    8    9   12   13   14   16   16   17   17   18   21   23   27   31   34 
LCS_GDT     N      49     N      49      5    8   13     4    5    6    7    9    9   10   12   13   14   16   16   17   17   18   21   24   27   31   34 
LCS_GDT     Q      50     Q      50      5    8   13     4    5    6    7    8    8    9   12   13   14   16   16   17   17   18   21   24   27   31   34 
LCS_GDT     V      51     V      51      4    8   13     3    4    6    7    9    9   10   12   13   14   16   16   17   17   19   21   24   27   31   34 
LCS_GDT     T      52     T      52      4    8   13     3    4    6    7    8    8    9   12   13   14   16   16   17   18   22   29   32   39   42   45 
LCS_GDT     S      53     S      53      4    8   24     3    3    6    7    9    9   10   12   13   14   16   16   25   26   29   39   43   45   51   52 
LCS_GDT     L      54     L      54      3    8   25     3    3    4    6    9    9   10   12   13   14   18   24   33   39   43   46   48   50   56   61 
LCS_GDT     I      55     I      55      3    8   25     3    3    6    7    9   12   18   20   23   25   26   32   37   39   43   46   50   55   58   61 
LCS_GDT     V      56     V      56     10   19   25     4    8   14   19   21   22   22   23   23   25   26   27   33   37   43   46   48   49   52   55 
LCS_GDT     I      57     I      57     10   19   25     4    8   14   19   21   22   22   23   23   26   30   34   39   43   45   46   53   57   61   64 
LCS_GDT     L      58     L      58     10   19   25     4    8   14   19   21   22   22   23   23   26   30   33   39   42   45   46   50   57   61   64 
LCS_GDT     S      59     S      59     12   19   25     4   10   14   19   21   22   22   23   24   27   30   34   43   47   51   53   55   57   61   64 
LCS_GDT     F      60     F      60     12   19   25     3   11   14   19   21   22   22   23   27   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     M      61     M      61     12   19   25     6   11   14   19   21   22   22   24   27   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     I      62     I      62     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     V      63     V      63     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     F      64     F      64     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     D      65     D      65     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     K      66     K      66     12   19   25     3    7   12   14   19   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     F      67     F      67     12   19   25     5   11   14   19   21   22   22   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     V      68     V      68     12   19   25     4   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     I      69     I      69     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     S      70     S      70     12   19   25     6   11   14   19   21   22   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     G      71     G      71      5   19   25     4    6   10   15   21   22   23   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     T      72     T      72      4   19   25     4   11   14   19   21   22   23   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     I      73     I      73      4   19   25     3    8   14   19   21   22   22   23   25   31   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     S      74     S      74      4   19   27     3   10   13   19   21   22   22   23   24   30   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     Q      75     Q      75      3    3   28     3    3    3    4    5   11   18   21   24   31   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     V      76     V      76      3    3   28     3    3    5   10   14   16   17   19   21   23   27   33   41   45   49   52   54   57   61   64 
LCS_GDT     N      77     N      77      3    3   28     3    3    6    7    9   13   16   19   21   25   30   34   41   45   49   52   54   57   61   64 
LCS_GDT     H      78     H      78      3    3   28     3    3    5    7    9   13   17   19   21   23   26   31   41   45   49   52   54   57   61   64 
LCS_GDT     I      79     I      79      4    5   28     3    4    4    5   10   14   16   19   21   23   24   26   29   32   41   46   52   57   61   64 
LCS_GDT     D      80     D      80      4    5   28     3    4    4    5    5   11   12   15   18   23   23   25   26   28   29   44   46   49   53   61 
LCS_GDT     G      81     G      81      4    5   28     3    4    4    5    5    5    6    6    8    9   10   13   21   24   28   35   46   49   56   61 
LCS_GDT     R      82     R      82      4    5   34     3    4    4    8   10   14   15   18   21   23   24   26   27   29   38   45   52   57   60   64 
LCS_GDT     I      83     I      83      7   11   35     3    6    6    9   11   13   14   14   18   20   23   26   27   28   29   31   38   45   53   58 
LCS_GDT     V      84     V      84      7   11   36     4    6    6    9   11   13   14   15   19   23   24   26   43   48   51   53   55   57   61   64 
LCS_GDT     N      85     N      85      7   16   36     3    5    6    8   11   13   14   15   18   23   24   26   29   46   49   53   55   57   61   64 
LCS_GDT     E      86     E      86      7   18   36     4    6    9   12   15   16   22   28   29   32   37   41   45   48   51   53   55   57   61   64 
LCS_GDT     P      87     P      87     14   18   36     4    6    9   13   18   20   23   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     S      88     S      88     14   19   36     4   13   13   14   17   21   24   28   29   31   33   41   45   47   51   53   55   57   61   64 
LCS_GDT     E      89     E      89     14   19   36     4   13   13   14   17   21   24   28   29   31   33   40   45   47   51   53   55   57   61   64 
LCS_GDT     L      90     L      90     14   19   36    10   13   13   14   17   21   24   28   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     N      91     N      91     14   19   36    10   13   13   14   17   21   24   28   29   31   33   41   45   48   51   53   55   57   61   64 
LCS_GDT     Q      92     Q      92     14   19   36    10   13   13   14   17   21   24   28   29   31   37   41   45   48   51   53   55   57   61   64 
LCS_GDT     E      93     E      93     14   19   36    10   13   13   14   17   21   24   28   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     E      94     E      94     14   19   36    10   13   13   14   17   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     V      95     V      95     14   19   36    10   13   13   14   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     E      96     E      96     14   19   36    10   13   13   14   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     T      97     T      97     14   19   36    10   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     L      98     L      98     14   19   36    10   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     A      99     A      99     14   19   36    13   13   13   15   18   21   23   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     R     100     R     100     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     P     101     P     101     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     C     102     C     102     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     L     103     L     103     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     N     104     N     104     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     M     105     M     105     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     L     106     L     106     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     N     107     N     107     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     R     108     R     108     14   19   36    13   13   13   15   18   21   24   28   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     L     109     L     109     14   19   36    13   13   13   15   18   21   24   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     T     110     T     110     14   19   36    13   13   13   15   18   21   24   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     Y     111     Y     111     14   19   36    13   13   13   15   18   21   24   26   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     E     112     E     112      3   19   36     3    4    6   11   16   21   24   28   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     V     113     V     113      4    4   36     3    4    6   10   14   17   22   28   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     T     114     T     114      4    4   36     3    3    4    4    6   17   23   26   30   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     E     115     E     115      4    4   36     3    3    4    6   14   17   20   28   29   32   37   42   45   48   51   53   55   57   61   64 
LCS_GDT     I     116     I     116      4    4   36     3    3    4    5    9   17   22   24   28   31   32   34   38   42   48   53   55   57   61   64 
LCS_GDT     A     117     A     117      5    7   36     3    5    5    6    6   15   21   23   23   25   26   31   36   38   41   44   50   55   60   64 
LCS_GDT     L     118     L     118      5    7   36     3    7   11   19   21   22   22   23   23   25   26   27   34   38   41   44   49   51   57   64 
LCS_GDT     D     119     D     119      5    7   36     3    5   10   11   15   15   21   23   23   25   26   27   29   32   35   42   47   50   52   54 
LCS_GDT     L     120     L     120      5    7   36     3    5    5   19   21   22   22   23   23   25   26   27   28   31   35   42   45   50   52   54 
LCS_GDT     P     121     P     121      5    7   10     3    5    5   14   16   19   22   23   23   25   26   27   29   32   34   41   45   50   52   54 
LCS_GDT     G     122     G     122      4    7   10     4    4    6    7   15   16   17   18   21   23   25   27   29   33   37   43   45   50   52   55 
LCS_GDT     I     123     I     123      4    7   10     4    4    6    7   10   14   16   20   23   27   32   34   37   41   44   52   55   57   61   64 
LCS_GDT     N     124     N     124      4    7   10     4    4    4    7    7    7   12   16   20   23   31   36   45   47   51   53   55   57   61   64 
LCS_GDT     L     125     L     125      4    7   10     4    4    6    7    7    7    8    8   16   27   36   42   45   48   51   53   55   57   61   64 
LCS_GDT     E     126     E     126      3    7   10     2    3    6    7    7    7    8    9   15   20   29   41   45   48   51   53   55   57   61   64 
LCS_GDT     F     127     F     127      3    7   10     0    3    6    7    7    7    8    9   12   20   30   41   45   48   50   53   55   57   61   64 
LCS_AVERAGE  LCS_A:  11.69  (   5.98    9.14   19.95 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     13     14     19     21     22     24     28     30     32     37     42     45     48     51     53     55     57     61     64 
GDT PERCENT_CA  10.40  10.40  11.20  15.20  16.80  17.60  19.20  22.40  24.00  25.60  29.60  33.60  36.00  38.40  40.80  42.40  44.00  45.60  48.80  51.20
GDT RMS_LOCAL    0.32   0.32   1.02   1.35   1.48   1.62   2.23   2.93   3.09   3.25   3.80   4.21   4.38   4.73   4.94   5.08   5.34   5.73   6.12   6.51
GDT RMS_ALL_CA  19.47  19.47  22.57  23.00  23.20  23.07  20.51  20.08  19.78  19.84  19.86  19.74  20.00  19.87  19.89  19.91  19.89  19.84  19.84  19.90

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         27.548
LGA    M       4      M       4         22.928
LGA    N       5      N       5         24.434
LGA    L       6      L       6         26.314
LGA    K       7      K       7         29.243
LGA    R       8      R       8         26.357
LGA    E       9      E       9         29.659
LGA    Q      10      Q      10         33.164
LGA    E      11      E      11         30.904
LGA    F      12      F      12         27.367
LGA    V      13      V      13         25.201
LGA    S      14      S      14         27.427
LGA    Q      15      Q      15         25.428
LGA    Y      16      Y      16         21.373
LGA    H      17      H      17         20.780
LGA    F      18      F      18         19.195
LGA    D      19      D      19         18.964
LGA    A      20      A      20         21.612
LGA    R      21      R      21         19.764
LGA    N      22      N      22         22.831
LGA    F      23      F      23         24.820
LGA    E      24      E      24         28.307
LGA    W      25      W      25         25.836
LGA    E      26      E      26         30.299
LGA    N      27      N      27         36.082
LGA    E      28      E      28         35.754
LGA    N      29      N      29         30.761
LGA    G      30      G      30         32.670
LGA    A      31      A      31         29.514
LGA    P      32      P      32         24.800
LGA    E      33      E      33         23.907
LGA    T      34      T      34         20.886
LGA    K      35      K      35         18.202
LGA    V      36      V      36         16.882
LGA    D      37      D      37         18.066
LGA    V      38      V      38         19.522
LGA    N      39      N      39         23.069
LGA    F      40      F      40         25.939
LGA    Q      41      Q      41         30.842
LGA    L      42      L      42         34.142
LGA    L      43      L      43         38.783
LGA    Q      44      Q      44         40.823
LGA    H      45      H      45         41.508
LGA    D      46      D      46         43.560
LGA    Q      47      Q      47         43.752
LGA    E      48      E      48         43.675
LGA    N      49      N      49         41.048
LGA    Q      50      Q      50         38.823
LGA    V      51      V      51         32.616
LGA    T      52      T      52         30.515
LGA    S      53      S      53         26.402
LGA    L      54      L      54         20.147
LGA    I      55      I      55         17.874
LGA    V      56      V      56         17.164
LGA    I      57      I      57         12.896
LGA    L      58      L      58         12.360
LGA    S      59      S      59          9.724
LGA    F      60      F      60          7.825
LGA    M      61      M      61          8.212
LGA    I      62      I      62          7.183
LGA    V      63      V      63          8.788
LGA    F      64      F      64          6.744
LGA    D      65      D      65          8.966
LGA    K      66      K      66          9.999
LGA    F      67      F      67          9.281
LGA    V      68      V      68          8.905
LGA    I      69      I      69          4.975
LGA    S      70      S      70          5.501
LGA    G      71      G      71          2.999
LGA    T      72      T      72          3.490
LGA    I      73      I      73          7.119
LGA    S      74      S      74          8.346
LGA    Q      75      Q      75          8.673
LGA    V      76      V      76         11.511
LGA    N      77      N      77         13.408
LGA    H      78      H      78         14.045
LGA    I      79      I      79         13.851
LGA    D      80      D      80         17.130
LGA    G      81      G      81         18.308
LGA    R      82      R      82         14.098
LGA    I      83      I      83         13.001
LGA    V      84      V      84          8.644
LGA    N      85      N      85          7.534
LGA    E      86      E      86          3.620
LGA    P      87      P      87          2.271
LGA    S      88      S      88          3.370
LGA    E      89      E      89          3.745
LGA    L      90      L      90          2.036
LGA    N      91      N      91          3.537
LGA    Q      92      Q      92          3.681
LGA    E      93      E      93          2.365
LGA    E      94      E      94          1.049
LGA    V      95      V      95          1.821
LGA    E      96      E      96          2.948
LGA    T      97      T      97          2.177
LGA    L      98      L      98          2.497
LGA    A      99      A      99          3.760
LGA    R     100      R     100          3.807
LGA    P     101      P     101          3.658
LGA    C     102      C     102          2.596
LGA    L     103      L     103          1.844
LGA    N     104      N     104          1.761
LGA    M     105      M     105          2.714
LGA    L     106      L     106          3.239
LGA    N     107      N     107          3.378
LGA    R     108      R     108          3.904
LGA    L     109      L     109          5.207
LGA    T     110      T     110          5.731
LGA    Y     111      Y     111          5.756
LGA    E     112      E     112          3.394
LGA    V     113      V     113          3.043
LGA    T     114      T     114          6.011
LGA    E     115      E     115          3.330
LGA    I     116      I     116          7.139
LGA    A     117      A     117         11.749
LGA    L     118      L     118         11.002
LGA    D     119      D     119         13.326
LGA    L     120      L     120         13.692
LGA    P     121      P     121         14.444
LGA    G     122      G     122         12.666
LGA    I     123      I     123          8.744
LGA    N     124      N     124          6.735
LGA    L     125      L     125          7.656
LGA    E     126      E     126          8.515
LGA    F     127      F     127          9.845

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     28    2.93    22.600    19.043     0.924

LGA_LOCAL      RMSD =  2.932  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.002  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 17.922  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.697585 * X  +  -0.231273 * Y  +   0.678150 * Z  +   6.782747
  Y_new =  -0.647589 * X  +   0.201499 * Y  +   0.734865 * Z  +  32.823479
  Z_new =  -0.306601 * X  +  -0.951794 * Y  +  -0.009208 * Z  +   3.843527 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.580470    1.561123  [ DEG:   -90.5543     89.4457 ]
  Theta =   0.311620    2.829973  [ DEG:    17.8545    162.1455 ]
  Phi   =  -0.748248    2.393344  [ DEG:   -42.8715    137.1285 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_5                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_5.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   28   2.93  19.043    17.92
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_5
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1       8.170  40.349   3.356  1.00  0.00              
ATOM      2  CA  ASN     2       5.208  37.652   4.639  1.00  0.00              
ATOM      3  CA  ALA     3       1.255  37.098   5.974  1.00  0.00              
ATOM      4  CA  MET     4       1.266  39.285   8.839  1.00  0.00              
ATOM      5  CA  ASN     5       3.519  42.055   7.485  1.00  0.00              
ATOM      6  CA  LEU     6       2.059  42.915   4.118  1.00  0.00              
ATOM      7  CA  LYS     7      -1.464  42.678   5.454  1.00  0.00              
ATOM      8  CA  ARG     8      -0.643  44.889   8.382  1.00  0.00              
ATOM      9  CA  GLU     9       0.631  47.689   6.062  1.00  0.00              
ATOM     10  CA  GLN    10      -2.488  48.594   4.193  1.00  0.00              
ATOM     11  CA  GLU    11      -0.628  49.453   1.046  1.00  0.00              
ATOM     12  CA  PHE    12       1.385  46.225   0.977  1.00  0.00              
ATOM     13  CA  VAL    13      -1.719  44.029   1.527  1.00  0.00              
ATOM     14  CA  SER    14      -3.712  45.851  -1.199  1.00  0.00              
ATOM     15  CA  GLN    15      -0.777  45.646  -3.594  1.00  0.00              
ATOM     16  CA  TYR    16      -0.392  41.869  -3.450  1.00  0.00              
ATOM     17  CA  HIS    17      -3.948  40.562  -2.948  1.00  0.00              
ATOM     18  CA  PHE    18      -3.964  37.708  -0.561  1.00  0.00              
ATOM     19  CA  ASP    19      -6.678  35.689   0.843  1.00  0.00              
ATOM     20  CA  ALA    20      -5.991  34.407   4.354  1.00  0.00              
ATOM     21  CA  ARG    21      -7.850  31.055   4.068  1.00  0.00              
ATOM     22  CA  ASN    22      -8.603  29.874   7.549  1.00  0.00              
ATOM     23  CA  PHE    23      -9.051  26.077   7.463  1.00  0.00              
ATOM     24  CA  GLU    24     -10.754  25.416  10.801  1.00  0.00              
ATOM     25  CA  TRP    25      -8.575  22.639  12.303  1.00  0.00              
ATOM     26  CA  GLU    26     -10.385  22.055  15.410  1.00  0.00              
ATOM     27  CA  ASN    27      -9.445  19.265  17.776  1.00  0.00              
ATOM     28  CA  GLU    28     -12.933  18.278  19.101  1.00  0.00              
ATOM     29  CA  ASN    29     -14.651  17.785  15.739  1.00  0.00              
ATOM     30  CA  GLY    30     -11.732  15.542  14.639  1.00  0.00              
ATOM     31  CA  ALA    31     -11.134  17.331  11.402  1.00  0.00              
ATOM     32  CA  PRO    32      -7.611  18.755  11.034  1.00  0.00              
ATOM     33  CA  GLU    33      -7.295  18.951   7.280  1.00  0.00              
ATOM     34  CA  THR    34      -5.852  22.359   6.634  1.00  0.00              
ATOM     35  CA  LYS    35      -3.317  21.654   3.931  1.00  0.00              
ATOM     36  CA  VAL    36      -3.111  23.917   0.960  1.00  0.00              
ATOM     37  CA  ASP    37      -0.383  23.353  -1.547  1.00  0.00              
ATOM     38  CA  VAL    38       0.790  26.147  -3.719  1.00  0.00              
ATOM     39  CA  ASN    39       3.264  25.588  -6.469  1.00  0.00              
ATOM     40  CA  PHE    40       5.319  28.560  -7.505  1.00  0.00              
ATOM     41  CA  GLN    41       7.652  28.844 -10.421  1.00  0.00              
ATOM     42  CA  LEU    42      10.531  31.191  -9.822  1.00  0.00              
ATOM     43  CA  LEU    43      11.878  33.494 -12.480  1.00  0.00              
ATOM     44  CA  GLN    44      13.939  36.143 -10.719  1.00  0.00              
ATOM     45  CA  HIS    45      11.976  39.270  -9.869  1.00  0.00              
ATOM     46  CA  ASP    46       8.544  37.634  -9.591  1.00  0.00              
ATOM     47  CA  GLN    47       9.113  34.675  -7.385  1.00  0.00              
ATOM     48  CA  GLU    48      10.941  36.735  -4.787  1.00  0.00              
ATOM     49  CA  ASN    49       7.917  39.060  -4.319  1.00  0.00              
ATOM     50  CA  GLN    50       5.203  36.471  -4.353  1.00  0.00              
ATOM     51  CA  VAL    51       3.842  36.533  -0.868  1.00  0.00              
ATOM     52  CA  THR    52       0.115  36.604  -1.223  1.00  0.00              
ATOM     53  CA  SER    53      -1.305  34.778   1.731  1.00  0.00              
ATOM     54  CA  LEU    54      -0.690  31.979   4.212  1.00  0.00              
ATOM     55  CA  ILE    55      -3.954  30.766   5.578  1.00  0.00              
ATOM     56  CA  VAL    56      -4.643  27.666   7.671  1.00  0.00              
ATOM     57  CA  ILE    57      -1.593  25.593   6.664  1.00  0.00              
ATOM     58  CA  LEU    58      -0.094  26.695   3.558  1.00  0.00              
ATOM     59  CA  SER    59       2.613  24.855   1.840  1.00  0.00              
ATOM     60  CA  PHE    60       4.481  26.541  -0.790  1.00  0.00              
ATOM     61  CA  MET    61       6.725  24.921  -3.153  1.00  0.00              
ATOM     62  CA  ILE    62       9.102  26.810  -5.162  1.00  0.00              
ATOM     63  CA  VAL    63      10.546  25.559  -8.199  1.00  0.00              
ATOM     64  CA  PHE    64      13.425  27.179  -9.836  1.00  0.00              
ATOM     65  CA  ASP    65      14.995  25.612 -12.850  1.00  0.00              
ATOM     66  CA  LYS    66      16.388  22.523 -11.075  1.00  0.00              
ATOM     67  CA  PHE    67      16.506  23.845  -7.478  1.00  0.00              
ATOM     68  CA  VAL    68      13.739  22.995  -5.098  1.00  0.00              
ATOM     69  CA  ILE    69      12.817  25.408  -2.299  1.00  0.00              
ATOM     70  CA  SER    70      10.203  24.485   0.235  1.00  0.00              
ATOM     71  CA  GLY    71       8.307  27.205   2.075  1.00  0.00              
ATOM     72  CA  THR    72       6.121  26.458   4.827  1.00  0.00              
ATOM     73  CA  ILE    73       3.965  29.006   6.034  1.00  0.00              
ATOM     74  CA  SER    74       2.689  28.212   9.281  1.00  0.00              
ATOM     75  CA  GLN    75       6.228  27.301  10.532  1.00  0.00              
ATOM     76  CA  VAL    76       7.670  30.640   9.538  1.00  0.00              
ATOM     77  CA  ASN    77       4.784  32.509  11.226  1.00  0.00              
ATOM     78  CA  HIS    78       5.036  30.580  14.517  1.00  0.00              
ATOM     79  CA  ILE    79       8.761  31.185  14.734  1.00  0.00              
ATOM     80  CA  ASP    80       8.173  34.903  14.041  1.00  0.00              
ATOM     81  CA  GLY    81       5.490  35.327  16.668  1.00  0.00              
ATOM     82  CA  ARG    82       7.594  33.633  19.332  1.00  0.00              
ATOM     83  CA  ILE    83      10.884  35.429  18.692  1.00  0.00              
ATOM     84  CA  VAL    84       9.074  38.830  18.585  1.00  0.00              
ATOM     85  CA  ASN    85       7.223  38.576  21.825  1.00  0.00              
ATOM     86  CA  GLU    86       4.135  40.447  21.180  1.00  0.00              
ATOM     87  CA  PRO    87       4.693  43.240  18.755  1.00  0.00              
ATOM     88  CA  SER    88       4.202  45.900  21.247  1.00  0.00              
ATOM     89  CA  GLU    89       7.033  44.915  23.499  1.00  0.00              
ATOM     90  CA  LEU    90       9.830  44.760  21.020  1.00  0.00              
ATOM     91  CA  ASN    91      11.951  47.793  20.079  1.00  0.00              
ATOM     92  CA  GLN    92      12.189  48.641  16.348  1.00  0.00              
ATOM     93  CA  GLU    93      15.802  47.533  16.221  1.00  0.00              
ATOM     94  CA  GLU    94      15.047  44.286  17.947  1.00  0.00              
ATOM     95  CA  VAL    95      12.135  43.613  15.533  1.00  0.00              
ATOM     96  CA  GLU    96      14.280  44.038  12.498  1.00  0.00              
ATOM     97  CA  THR    97      16.779  41.638  14.069  1.00  0.00              
ATOM     98  CA  LEU    98      13.945  39.186  14.756  1.00  0.00              
ATOM     99  CA  ALA    99      12.423  39.200  11.316  1.00  0.00              
ATOM    100  CA  ARG   100      15.863  38.571   9.869  1.00  0.00              
ATOM    101  CA  PRO   101      16.994  35.700  12.059  1.00  0.00              
ATOM    102  CA  CYS   102      13.718  33.886  11.541  1.00  0.00              
ATOM    103  CA  LEU   103      13.843  34.291   7.790  1.00  0.00              
ATOM    104  CA  ASN   104      17.412  32.906   7.788  1.00  0.00              
ATOM    105  CA  MET   105      16.220  29.898   9.833  1.00  0.00              
ATOM    106  CA  LEU   106      13.295  29.334   7.437  1.00  0.00              
ATOM    107  CA  ASN   107      15.763  29.468   4.501  1.00  0.00              
ATOM    108  CA  ARG   108      17.746  26.731   6.131  1.00  0.00              
ATOM    109  CA  LEU   109      14.721  24.484   6.741  1.00  0.00              
ATOM    110  CA  THR   110      13.422  24.692   3.124  1.00  0.00              
ATOM    111  CA  TYR   111      16.740  24.389   1.323  1.00  0.00              
ATOM    112  CA  GLU   112      17.507  22.334  -1.838  1.00  0.00              
ATOM    113  CA  VAL   113      19.478  24.285  -4.356  1.00  0.00              
ATOM    114  CA  THR   114      21.708  21.757  -6.021  1.00  0.00              
ATOM    115  CA  GLU   115      23.819  24.278  -8.018  1.00  0.00              
ATOM    116  CA  ILE   116      21.980  27.568  -7.758  1.00  0.00              
ATOM    117  CA  ALA   117      22.750  30.812  -9.646  1.00  0.00              
ATOM    118  CA  LEU   118      20.523  33.761  -8.784  1.00  0.00              
ATOM    119  CA  ASP   119      19.081  35.596 -11.820  1.00  0.00              
ATOM    120  CA  LEU   120      17.695  38.944 -10.852  1.00  0.00              
ATOM    121  CA  PRO   121      20.262  41.586 -11.862  1.00  0.00              
ATOM    122  CA  GLY   122      23.075  39.135 -12.207  1.00  0.00              
ATOM    123  CA  ILE   123      23.759  38.201  -8.631  1.00  0.00              
ATOM    124  CA  ASN   124      24.532  34.491  -7.985  1.00  0.00              
ATOM    125  CA  LEU   125      23.865  32.842  -4.865  1.00  0.00              
ATOM    126  CA  GLU   126      20.572  30.431  -3.873  1.00  0.00              
ATOM    127  CA  PHE   127      19.927  29.128   0.073  1.00  0.00              
TER                                                                             
END
