
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  162 (  162),  selected  142 , name T0385TS168_1
# Molecule2: number of CA atoms  142 ( 1050),  selected  142 , name T0385.pdb
# PARAMETERS: T0385TS168_1.T0385.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        46 - 87          4.94    30.01
  LONGEST_CONTINUOUS_SEGMENT:    42        47 - 88          4.94    30.01
  LCS_AVERAGE:     26.39

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        95 - 122         1.92    23.47
  LCS_AVERAGE:     14.11

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        50 - 75          0.94    24.31
  LONGEST_CONTINUOUS_SEGMENT:    26        96 - 121         0.76    23.28
  LCS_AVERAGE:     12.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     S      17     S      17      3    4   33     3    4   16   25   29   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     E      18     E      18      3    4   33     3    3    3    7   11   19   26   34   38   43   45   49   51   54   55   57   59   61   62   65 
LCS_GDT     G      19     G      19      3    4   33     3    3    4    6    8   12   18   27   33   39   41   49   51   54   55   56   58   61   62   65 
LCS_GDT     S      20     S      20      3   20   33     3    4    7   12   18   24   28   37   45   46   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      21     A      21     18   20   33    18   18   18   19   27   37   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     D      22     D      22     18   20   33    18   18   18   25   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     N      23     N      23     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      24     A      24     18   20   33    18   18   18   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      25     A      25     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     L      26     L      26     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     C      27     C      27     18   20   33    18   18   18   27   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     D      28     D      28     18   20   33    18   18   19   27   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      29     A      29     18   20   33    18   18   18   27   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     L      30     L      30     18   20   33    18   18   18   25   32   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      31     A      31     18   20   33    18   18   18   21   32   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     V      32     V      32     18   20   33    18   18   18   24   32   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     E      33     E      33     18   20   33    18   18   18   19   29   35   37   43   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     H      34     H      34     18   20   33    18   18   18   19   23   28   37   42   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     A      35     A      35     18   20   33    18   18   18   19   29   35   38   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     T      36     T      36     18   20   33    18   18   18   19   29   35   37   43   46   48   50   51   52   54   55   58   59   62   65   67 
LCS_GDT     I      37     I      37     18   20   33    18   21   25   26   27   27   35   38   45   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     Y      38     Y      38     18   20   33    18   18   18   19   23   26   35   39   45   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     G      39     G      39      3   20   33     3    3    3    7   16   26   37   39   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     Y      40     Y      40      3    4   33     0    3    3    4    4    6    7   14   23   36   45   51   51   54   55   58   59   61   62   65 
LCS_GDT     G      41     G      41      3    4   33     0    3    3    7   12   20   28   37   39   46   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     I      42     I      42      3    4   33     0    3    4    5    9   11   14   18   23   32   36   40   45   49   55   58   59   61   62   65 
LCS_GDT     V      43     V      43      3    4   33     1    3    5    6    6   11   13   14   18   26   27   35   42   45   52   55   57   59   62   65 
LCS_GDT     S      44     S      44      3    7   33     1    3    3    3    6    9   13   20   23   28   35   40   45   47   52   55   57   59   62   65 
LCS_GDT     A      45     A      45      5    7   34     3    4    5    6    6    9   10   11   14   16   23   31   33   40   42   52   54   58   62   63 
LCS_GDT     L      46     L      46      5    7   42     3    4    6    6    7   10   10   14   19   23   35   36   37   40   45   52   54   58   62   62 
LCS_GDT     S      47     S      47      5    7   42     3    4    5    7   10   15   18   20   25   32   36   40   45   49   52   55   57   59   62   65 
LCS_GDT     P      48     P      48      5    7   42     3    3    6    6   12   14   18   22   30   36   40   49   51   54   55   56   58   61   62   65 
LCS_GDT     P      49     P      49      5    7   42     3    4    6    6   17   24   29   37   39   44   48   50   52   54   55   58   59   61   62   65 
LCS_GDT     G      50     G      50     26   27   42     3    3    6   19   26   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     V      51     V      51     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   64 
LCS_GDT     N      52     N      52     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   64 
LCS_GDT     F      53     F      53     26   27   42    12   25   25   30   34   38   41   43   46   48   50   51   52   54   55   58   59   61   62   64 
LCS_GDT     L      54     L      54     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     V      55     V      55     26   27   42    14   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      56     A      56     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   64 
LCS_GDT     D      57     D      57     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      58     A      58     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     L      59     L      59     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   65   67 
LCS_GDT     K      60     K      60     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   66 
LCS_GDT     Q      61     Q      61     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   66 
LCS_GDT     H      62     H      62     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     R      63     R      63     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     H      64     H      64     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   66 
LCS_GDT     R      65     R      65     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     R      66     R      66     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     D      67     D      67     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     D      68     D      68     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     V      69     V      69     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     I      70     I      70     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     V      71     V      71     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     M      72     M      72     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     L      73     L      73     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     S      74     S      74     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     A      75     A      75     26   27   42    16   25   25   25   32   39   41   43   46   48   50   51   52   54   55   58   59   61   62   65 
LCS_GDT     R      76     R      76      3   27   42     2    3    4    8   19   24   28   30   31   34   38   41   50   53   54   58   59   61   62   63 
LCS_GDT     G      77     G      77      4    6   42     4    5    5    5    6    8   11   14   18   25   31   35   39   41   43   55   58   61   62   64 
LCS_GDT     V      78     V      78      4    6   42     4    5    5    5    6    8   11   14   18   25   31   35   39   41   43   44   46   46   47   52 
LCS_GDT     T      79     T      79      4    6   42     4    5    5    5    6    8   11   14   17   25   31   34   37   41   43   44   46   46   47   48 
LCS_GDT     A      80     A      80      4    6   42     4    5    5    5    7    8   11   14   18   25   31   35   39   41   43   44   46   46   47   48 
LCS_GDT     P      81     P      81      3    6   42     3    3    4    5    7    8   11   14   20   28   32   36   39   41   43   44   46   46   47   48 
LCS_GDT     I      82     I      82      3    6   42     0    5    5    5    6    8   10   14   17   25   31   34   39   41   43   44   46   46   47   48 
LCS_GDT     A      83     A      83      3    5   42     1    3    3    6    8   10   12   14   22   30   35   36   39   41   43   44   46   46   49   58 
LCS_GDT     A      84     A      84      4    5   42     1    4    5    8   10   11   12   14   22   30   35   36   39   41   43   44   46   46   47   48 
LCS_GDT     A      85     A      85      4    5   42     3    4    5    8   10   11   12   14   22   30   35   36   39   41   43   44   46   46   47   48 
LCS_GDT     G      86     G      86      4    5   42     3    4    5    8   10   11   12   14   21   30   35   36   39   41   43   44   46   46   59   65 
LCS_GDT     Y      87     Y      87      4    5   42     3    3    5    8   10   13   18   21   24   30   35   36   39   41   48   54   59   63   65   67 
LCS_GDT     Q      88     Q      88      4    5   42     3    3    4    7    8   11   14   19   27   29   30   36   37   42   50   56   60   63   65   67 
LCS_GDT     L      89     L      89      3    5   37     3    3    4    6    7    8   10   14   26   29   30   32   35   42   50   56   60   63   65   67 
LCS_GDT     P      90     P      90      4    5   37     3    4    4    5    6    7   10   15   26   31   32   33   35   42   50   56   60   63   65   67 
LCS_GDT     M      91     M      91      4    5   37     3    4    6   19   26   28   29   30   31   32   33   34   35   40   49   52   57   63   65   67 
LCS_GDT     Q      92     Q      92      4    7   37     3    4    4    6    7   11   13   24   31   32   33   34   35   37   38   38   39   41   44   58 
LCS_GDT     V      93     V      93      4    7   37     3    4    4    6    8   16   23   30   31   32   33   34   35   37   38   38   39   41   42   48 
LCS_GDT     S      94     S      94      4    7   37     3    3    4    6   11   24   26   30   31   32   33   34   35   37   38   38   39   41   42   48 
LCS_GDT     S      95     S      95      4   28   37     3    3    4    6    8   12   23   30   31   32   33   34   35   37   38   38   39   41   44   49 
LCS_GDT     A      96     A      96     26   28   37     4    7   25   26   27   28   29   30   31   32   33   34   35   40   49   54   60   63   65   67 
LCS_GDT     A      97     A      97     26   28   37     4    4   11   26   27   28   29   30   31   32   33   34   35   38   43   51   59   63   65   67 
LCS_GDT     D      98     D      98     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A      99     A      99     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     100     A     100     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     R     101     R     101     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     L     102     L     102     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     103     A     103     26   28   37    18   23   25   26   27   28   29   30   31   32   33   38   43   44   50   56   60   63   65   67 
LCS_GDT     V     104     V     104     26   28   37    18   23   25   26   27   28   29   30   31   32   35   39   43   46   52   56   60   63   65   67 
LCS_GDT     R     105     R     105     26   28   37    18   23   25   26   27   28   29   30   31   32   33   38   43   45   50   56   60   63   65   67 
LCS_GDT     M     106     M     106     26   28   37    18   23   25   26   27   28   29   30   31   34   37   42   48   52   54   56   60   63   65   67 
LCS_GDT     E     107     E     107     26   28   37    18   23   25   26   27   30   34   36   43   46   49   50   52   54   55   58   60   63   65   67 
LCS_GDT     N     108     N     108     26   28   37    18   23   25   26   27   28   29   30   31   34   38   41   44   49   53   56   60   63   65   67 
LCS_GDT     D     109     D     109     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     G     110     G     110     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     111     A     111     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     T     112     T     112     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     113     A     113     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     W     114     W     114     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     R     115     R     115     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     116     A     116     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     V     117     V     117     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     V     118     V     118     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     E     119     E     119     26   28   37    18   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     H     120     H     120     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   60   63   65   67 
LCS_GDT     A     121     A     121     26   28   37     4   19   25   26   27   28   29   30   31   32   33   34   35   40   49   55   60   63   65   67 
LCS_GDT     E     122     E     122      3   28   37     3    3    4    5    6   14   25   29   30   31   32   33   35   42   50   56   60   63   65   67 
LCS_GDT     T     123     T     123      3   26   37     1    3    4    5    6    8   15   24   25   28   31   33   35   42   50   56   60   63   65   67 
LCS_GDT     A     124     A     124      3   26   37     0    3    4    5   20   24   25   26   27   28   31   32   34   42   50   56   60   63   65   67 
LCS_GDT     D     125     D     125     24   26   37    21   21   23   24   24   24   25   26   28   29   31   32   33   42   50   56   60   63   65   67 
LCS_GDT     D     126     D     126     24   26   37    21   21   23   24   24   24   25   26   28   29   31   32   35   42   50   56   60   63   65   67 
LCS_GDT     R     127     R     127     24   26   36    21   21   23   24   24   24   25   26   28   29   30   32   33   34   37   50   59   62   65   67 
LCS_GDT     V     128     V     128     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   34   44   56   60   63   65   67 
LCS_GDT     F     129     F     129     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   35   42   50   56   60   63   65   67 
LCS_GDT     A     130     A     130     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   42   50   56   60   63   65   67 
LCS_GDT     S     131     S     131     24   26   36    21   21   23   24   24   24   25   26   28   29   37   39   42   47   49   56   60   63   65   67 
LCS_GDT     T     132     T     132     24   26   36    21   21   23   24   24   24   25   26   28   33   37   39   42   50   55   58   60   63   65   67 
LCS_GDT     A     133     A     133     24   26   36    21   21   23   24   24   24   25   26   28   29   37   43   49   54   55   58   60   63   65   67 
LCS_GDT     L     134     L     134     24   26   36    21   21   23   30   34   39   41   43   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     T     135     T     135     24   26   36    21   21   23   30   34   39   41   43   46   48   50   51   52   54   55   58   60   63   65   67 
LCS_GDT     E     136     E     136     24   26   36    21   21   23   24   24   24   25   28   31   35   40   45   51   54   55   58   60   63   65   67 
LCS_GDT     S     137     S     137     24   26   36    21   21   23   24   24   24   25   26   28   29   31   37   42   45   50   56   60   63   65   67 
LCS_GDT     A     138     A     138     24   26   36    21   21   23   24   24   24   25   26   28   29   31   39   43   46   52   56   60   63   65   67 
LCS_GDT     V     139     V     139     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   37   42   50   56   60   63   65   67 
LCS_GDT     M     140     M     140     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   42   50   56   60   63   65   67 
LCS_GDT     A     141     A     141     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   36   50   56   60   63   65   67 
LCS_GDT     T     142     T     142     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   34   42   50   56   60   63   65   67 
LCS_GDT     R     143     R     143     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   35   42   50   56   60   63   65   67 
LCS_GDT     W     144     W     144     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   37   50   56   60   63   65   67 
LCS_GDT     N     145     N     145     24   26   36    21   21   23   24   24   24   25   26   28   29   31   32   33   40   50   56   60   63   65   67 
LCS_GDT     R     146     R     146     24   26   36     3    6   23   24   24   24   25   26   28   29   31   32   33   42   50   56   60   63   65   67 
LCS_GDT     V     147     V     147     24   26   36     3    5   23   24   24   24   25   26   28   29   31   32   33   34   41   56   60   63   65   67 
LCS_GDT     L     148     L     148     24   26   36     3   10   22   24   24   24   25   26   28   29   31   32   33   34   42   54   60   63   65   67 
LCS_GDT     G     149     G     149      3   26   36     3    3    3    5    7    8    9   14   19   27   31   32   33   34   37   40   59   63   65   67 
LCS_GDT     A     150     A     150      3    7   36     3    3    4    5    7    8   10   13   16   19   24   30   32   34   37   53   60   63   65   67 
LCS_GDT     W     151     W     151      3    7   36     3    3    4    5    7    8   10   16   22   28   31   32   33   34   37   37   40   56   64   67 
LCS_GDT     P     152     P     152      3    7   36     1    3    4    9   14   24   25   26   27   28   31   32   33   34   37   37   38   52   64   67 
LCS_GDT     I     153     I     153      3    7   36     1    3    4    5    6    8   25   26   28   29   31   32   33   34   37   37   38   39   41   51 
LCS_GDT     T     154     T     154      3    7   36     3    3    4    5    6    8   18   26   28   29   30   32   33   34   37   37   38   39   41   42 
LCS_GDT     A     155     A     155      3    7   36     3    3    4    4    6    8    8    9   11   13   15   18   28   28   31   34   38   39   40   41 
LCS_GDT     A     156     A     156      3    7   36     3    3    4    5    6    8    8    9   11   20   23   24   28   28   33   37   38   39   40   41 
LCS_GDT     F     157     F     157      3    5   36     3    3    4    4    5   14   20   24   27   29   30   32   32   34   36   37   38   39   40   41 
LCS_GDT     P     158     P     158      3    4   36     3    3    3    3    3    7   10   13   18   22   30   32   32   34   36   37   38   39   40   41 
LCS_AVERAGE  LCS_A:  17.50  (  12.01   14.11   26.39 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     25     30     34     39     41     43     46     48     50     51     52     54     55     58     60     63     65     67 
GDT PERCENT_CA  14.79  17.61  17.61  21.13  23.94  27.46  28.87  30.28  32.39  33.80  35.21  35.92  36.62  38.03  38.73  40.85  42.25  44.37  45.77  47.18
GDT RMS_LOCAL    0.25   0.58   0.58   1.32   1.51   1.86   1.92   2.11   2.38   2.57   2.87   2.98   3.16   3.39   3.58   4.27   6.84   6.95   7.04   7.21
GDT RMS_ALL_CA  26.26  24.34  24.34  24.97  24.98  24.86  24.91  24.84  24.77  24.69  24.72  24.73  24.59  24.65  24.76  24.70  20.62  20.62  20.61  20.56

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17          3.062
LGA    E      18      E      18          9.489
LGA    G      19      G      19         11.578
LGA    S      20      S      20          7.047
LGA    A      21      A      21          3.778
LGA    D      22      D      22          2.853
LGA    N      23      N      23          1.532
LGA    A      24      A      24          2.202
LGA    A      25      A      25          1.932
LGA    L      26      L      26          1.385
LGA    C      27      C      27          1.462
LGA    D      28      D      28          1.334
LGA    A      29      A      29          1.904
LGA    L      30      L      30          2.536
LGA    A      31      A      31          2.538
LGA    V      32      V      32          2.436
LGA    E      33      E      33          3.868
LGA    H      34      H      34          4.297
LGA    A      35      A      35          3.672
LGA    T      36      T      36          4.297
LGA    I      37      I      37          5.250
LGA    Y      38      Y      38          5.124
LGA    G      39      G      39          4.412
LGA    Y      40      Y      40          6.544
LGA    G      41      G      41          7.080
LGA    I      42      I      42         13.452
LGA    V      43      V      43         15.364
LGA    S      44      S      44         15.202
LGA    A      45      A      45         18.363
LGA    L      46      L      46         20.195
LGA    S      47      S      47         15.895
LGA    P      48      P      48         12.225
LGA    P      49      P      49          8.861
LGA    G      50      G      50          2.768
LGA    V      51      V      51          1.683
LGA    N      52      N      52          3.632
LGA    F      53      F      53          3.792
LGA    L      54      L      54          1.601
LGA    V      55      V      55          1.915
LGA    A      56      A      56          3.284
LGA    D      57      D      57          2.604
LGA    A      58      A      58          1.058
LGA    L      59      L      59          2.038
LGA    K      60      K      60          2.414
LGA    Q      61      Q      61          1.504
LGA    H      62      H      62          0.919
LGA    R      63      R      63          1.385
LGA    H      64      H      64          1.092
LGA    R      65      R      65          0.642
LGA    R      66      R      66          0.940
LGA    D      67      D      67          0.622
LGA    D      68      D      68          0.682
LGA    V      69      V      69          0.944
LGA    I      70      I      70          0.833
LGA    V      71      V      71          1.170
LGA    M      72      M      72          1.781
LGA    L      73      L      73          1.919
LGA    S      74      S      74          1.869
LGA    A      75      A      75          2.553
LGA    R      76      R      76          8.748
LGA    G      77      G      77         13.187
LGA    V      78      V      78         16.272
LGA    T      79      T      79         20.742
LGA    A      80      A      80         19.923
LGA    P      81      P      81         26.447
LGA    I      82      I      82         26.876
LGA    A      83      A      83         24.641
LGA    A      84      A      84         30.115
LGA    A      85      A      85         32.326
LGA    G      86      G      86         31.443
LGA    Y      87      Y      87         29.663
LGA    Q      88      Q      88         33.113
LGA    L      89      L      89         29.360
LGA    P      90      P      90         26.117
LGA    M      91      M      91         24.825
LGA    Q      92      Q      92         24.138
LGA    V      93      V      93         24.354
LGA    S      94      S      94         30.711
LGA    S      95      S      95         32.424
LGA    A      96      A      96         33.355
LGA    A      97      A      97         33.768
LGA    D      98      D      98         29.835
LGA    A      99      A      99         24.000
LGA    A     100      A     100         22.039
LGA    R     101      R     101         22.443
LGA    L     102      L     102         19.055
LGA    A     103      A     103         13.128
LGA    V     104      V     104         13.147
LGA    R     105      R     105         15.751
LGA    M     106      M     106         10.776
LGA    E     107      E     107          6.637
LGA    N     108      N     108         11.538
LGA    D     109      D     109         15.328
LGA    G     110      G     110         12.415
LGA    A     111      A     111         13.222
LGA    T     112      T     112         19.598
LGA    A     113      A     113         21.909
LGA    W     114      W     114         21.502
LGA    R     115      R     115         23.994
LGA    A     116      A     116         29.846
LGA    V     117      V     117         31.286
LGA    V     118      V     118         31.683
LGA    E     119      E     119         35.964
LGA    H     120      H     120         40.660
LGA    A     121      A     121         41.371
LGA    E     122      E     122         42.036
LGA    T     123      T     123         38.601
LGA    A     124      A     124         33.595
LGA    D     125      D     125         29.789
LGA    D     126      D     126         25.633
LGA    R     127      R     127         22.003
LGA    V     128      V     128         20.393
LGA    F     129      F     129         18.887
LGA    A     130      A     130         13.664
LGA    S     131      S     131         11.014
LGA    T     132      T     132         10.399
LGA    A     133      A     133          9.374
LGA    L     134      L     134          3.192
LGA    T     135      T     135          2.909
LGA    E     136      E     136          9.130
LGA    S     137      S     137          9.963
LGA    A     138      A     138         10.675
LGA    V     139      V     139         13.014
LGA    M     140      M     140         18.302
LGA    A     141      A     141         20.036
LGA    T     142      T     142         21.847
LGA    R     143      R     143         25.240
LGA    W     144      W     144         29.576
LGA    N     145      N     145         31.295
LGA    R     146      R     146         35.104
LGA    V     147      V     147         39.505
LGA    L     148      L     148         40.309
LGA    G     149      G     149         44.730
LGA    A     150      A     150         48.918
LGA    W     151      W     151         52.965
LGA    P     152      P     152         58.122
LGA    I     153      I     153         58.435
LGA    T     154      T     154         64.131
LGA    A     155      A     155         66.223
LGA    A     156      A     156         70.326
LGA    F     157      F     157         71.260
LGA    P     158      P     158         71.757

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  162  142    4.0     43    2.11    27.465    24.747     1.945

LGA_LOCAL      RMSD =  2.110  Number of atoms =   43  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.622  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 19.368  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.644429 * X  +  -0.438925 * Y  +  -0.626144 * Z  +  29.524908
  Y_new =  -0.649761 * X  +   0.746030 * Y  +   0.145772 * Z  +  17.687866
  Z_new =   0.403139 * X  +   0.500784 * Y  +  -0.765960 * Z  +  29.872358 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.562552   -0.579041  [ DEG:   146.8234    -33.1766 ]
  Theta =  -0.414944   -2.726649  [ DEG:   -23.7745   -156.2254 ]
  Phi   =  -2.352075    0.789518  [ DEG:  -134.7639     45.2360 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS168_1                                  
REMARK     2: T0385.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS168_1.T0385.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  162  142   4.0   43   2.11  24.747    19.37
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS168_1
PFRMAT TS
TARGET T0385
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      21.200 -13.068  50.285  1.00 25.00           C
ATOM      2  CA  THR     2      24.880 -12.449  49.563  1.00 25.00           C
ATOM      3  CA  SER     3      28.600 -13.185  49.552  1.00 25.00           C
ATOM      4  CA  SER     4      30.765 -10.405  50.959  1.00 25.00           C
ATOM      5  CA  GLU     5      29.524  -6.849  51.103  1.00 25.00           C
ATOM      6  CA  PRO     6      30.466  -3.951  48.847  1.00 25.00           C
ATOM      7  CA  ALA     7      32.086  -1.662  51.494  1.00 25.00           C
ATOM      8  CA  HIS     8      31.575   1.658  53.342  1.00 25.00           C
ATOM      9  CA  GLY     9      32.763   3.942  56.094  1.00 25.00           C
ATOM     10  CA  ALA    10      30.546   4.942  59.031  1.00 25.00           C
ATOM     11  CA  THR    11      30.161   8.667  58.406  1.00 25.00           C
ATOM     12  CA  PRO    12      26.971   9.722  60.237  1.00 25.00           C
ATOM     13  CA  LYS    13      24.618  11.869  58.276  1.00 25.00           C
ATOM     14  CA  ARG    14      21.679  10.890  56.155  1.00 25.00           C
ATOM     15  CA  SER    15      21.733  11.540  52.424  1.00 25.00           C
ATOM     16  CA  PRO    16      18.426  13.294  51.760  1.00 25.00           C
ATOM     17  CA  SER    17      18.297  14.750  48.236  1.00 25.00           C
ATOM     18  CA  GLU    18      14.829  13.673  47.162  1.00 25.00           C
ATOM     19  CA  GLY    19      15.886  11.568  44.176  1.00 25.00           C
ATOM     20  CA  SER    20      18.638   9.158  43.272  1.00 25.00           C
ATOM     21  CA  ALA    21      21.428  11.605  42.517  1.00 25.00           C
ATOM     22  CA  ASP    22      23.650  14.457  41.255  1.00 25.00           C
ATOM     23  CA  ASN    23      26.141  11.921  39.831  1.00 25.00           C
ATOM     24  CA  ALA    24      23.286  10.066  38.076  1.00 25.00           C
ATOM     25  CA  ALA    25      22.019  13.364  36.598  1.00 25.00           C
ATOM     26  CA  LEU    26      25.546  14.190  35.355  1.00 25.00           C
ATOM     27  CA  CYS    27      25.820  10.722  33.753  1.00 25.00           C
ATOM     28  CA  ASP    28      22.429  11.218  32.042  1.00 25.00           C
ATOM     29  CA  ALA    29      23.566  14.631  30.727  1.00 25.00           C
ATOM     30  CA  LEU    30      26.793  13.067  29.384  1.00 25.00           C
ATOM     31  CA  ALA    31      24.769  10.314  27.654  1.00 25.00           C
ATOM     32  CA  VAL    32      22.477  12.952  26.086  1.00 25.00           C
ATOM     33  CA  GLU    33      25.530  14.905  24.850  1.00 25.00           C
ATOM     34  CA  HIS    34      26.994  11.707  23.335  1.00 25.00           C
ATOM     35  CA  ALA    35      23.665  10.981  21.587  1.00 25.00           C
ATOM     36  CA  THR    36      23.589  14.549  20.197  1.00 25.00           C
ATOM     37  CA  ILE    37      27.177  14.152  18.917  1.00 25.00           C
ATOM     38  CA  TYR    38      26.239  10.839  17.240  1.00 25.00           C
ATOM     39  CA  GLY    39      28.276   7.906  18.465  1.00 25.00           C
ATOM     40  CA  TYR    40      31.999   7.229  17.823  1.00 25.00           C
ATOM     41  CA  GLY    41      34.619   8.502  15.292  1.00 25.00           C
ATOM     42  CA  ILE    42      36.933  11.317  14.074  1.00 25.00           C
ATOM     43  CA  VAL    43      38.523  14.531  15.430  1.00 25.00           C
ATOM     44  CA  SER    44      37.722  17.894  16.964  1.00 25.00           C
ATOM     45  CA  ALA    45      35.109  20.351  15.675  1.00 25.00           C
ATOM     46  CA  LEU    46      34.536  23.252  13.245  1.00 25.00           C
ATOM     47  CA  SER    47      35.877  21.976   9.928  1.00 25.00           C
ATOM     48  CA  PRO    48      34.493  19.021   7.902  1.00 25.00           C
ATOM     49  CA  PRO    49      34.124  18.380   4.157  1.00 25.00           C
ATOM     50  CA  GLY    50      30.551  17.108   4.394  1.00 25.00           C
ATOM     51  CA  VAL    51      27.550  16.423   6.672  1.00 25.00           C
ATOM     52  CA  ASN    52      28.927  12.942   7.481  1.00 25.00           C
ATOM     53  CA  PHE    53      32.345  14.460   8.307  1.00 25.00           C
ATOM     54  CA  LEU    54      30.675  17.036  10.595  1.00 25.00           C
ATOM     55  CA  VAL    55      28.732  14.248  12.359  1.00 25.00           C
ATOM     56  CA  ALA    56      31.971  12.262  12.842  1.00 25.00           C
ATOM     57  CA  ASP    57      33.684  15.364  14.295  1.00 25.00           C
ATOM     58  CA  ALA    58      30.745  15.895  16.691  1.00 25.00           C
ATOM     59  CA  LEU    59      30.947  12.232  17.791  1.00 25.00           C
ATOM     60  CA  LYS    60      34.711  12.596  18.397  1.00 25.00           C
ATOM     61  CA  GLN    61      34.096  15.756  20.472  1.00 25.00           C
ATOM     62  CA  HIS    62      31.441  13.917  22.530  1.00 25.00           C
ATOM     63  CA  ARG    63      33.872  11.020  23.125  1.00 25.00           C
ATOM     64  CA  HIS    64      36.578  13.487  24.244  1.00 25.00           C
ATOM     65  CA  ARG    65      34.101  15.151  26.645  1.00 25.00           C
ATOM     66  CA  ARG    66      33.151  11.729  28.076  1.00 25.00           C
ATOM     67  CA  ASP    67      36.852  10.877  28.563  1.00 25.00           C
ATOM     68  CA  ASP    68      37.412  14.219  30.347  1.00 25.00           C
ATOM     69  CA  VAL    69      34.411  13.533  32.625  1.00 25.00           C
ATOM     70  CA  ILE    70      35.788  10.052  33.434  1.00 25.00           C
ATOM     71  CA  VAL    71      39.206  11.570  34.260  1.00 25.00           C
ATOM     72  CA  MET    72      37.537  14.147  36.548  1.00 25.00           C
ATOM     73  CA  LEU    73      35.593  11.357  38.312  1.00 25.00           C
ATOM     74  CA  SER    74      38.833   9.373  38.796  1.00 25.00           C
ATOM     75  CA  ALA    75      40.546  12.475  40.248  1.00 25.00           C
ATOM     76  CA  ARG    76      41.891  15.713  38.901  1.00 25.00           C
ATOM     77  CA  GLY    77      40.987  18.934  37.170  1.00 25.00           C
ATOM     78  CA  VAL    78      41.420  18.882  33.389  1.00 25.00           C
ATOM     79  CA  THR    79      43.098  21.781  31.582  1.00 25.00           C
ATOM     80  CA  ALA    80      40.579  22.801  28.990  1.00 25.00           C
ATOM     81  CA  PRO    81      41.783  26.437  29.006  1.00 25.00           C
ATOM     82  CA  ILE    82      42.088  26.378  25.188  1.00 25.00           C
ATOM     83  CA  ALA    83      38.542  24.964  24.902  1.00 25.00           C
ATOM     84  CA  ALA    84      37.230  27.715  27.222  1.00 25.00           C
ATOM     85  CA  ALA    85      36.145  28.987  23.758  1.00 25.00           C
ATOM     86  CA  GLY    86      37.964  27.558  20.706  1.00 25.00           C
ATOM     87  CA  TYR    87      40.512  24.718  20.213  1.00 25.00           C
ATOM     88  CA  GLN    88      43.773  23.182  21.336  1.00 25.00           C
ATOM     89  CA  LEU    89      42.229  21.399  24.392  1.00 25.00           C
ATOM     90  CA  PRO    90      38.730  19.858  24.691  1.00 25.00           C
ATOM     91  CA  MET    91      35.150  18.822  24.289  1.00 25.00           C
ATOM     92  CA  GLN    92      31.386  18.157  24.714  1.00 25.00           C
ATOM     93  CA  VAL    93      29.193  17.351  27.714  1.00 25.00           C
ATOM     94  CA  SER    94      30.998  16.783  31.015  1.00 25.00           C
ATOM     95  CA  SER    95      29.707  20.078  32.246  1.00 25.00           C
ATOM     96  CA  ALA    96      33.151  21.261  33.281  1.00 25.00           C
ATOM     97  CA  ALA    97      33.663  24.726  31.731  1.00 25.00           C
ATOM     98  CA  ASP    98      35.557  23.159  28.794  1.00 25.00           C
ATOM     99  CA  ALA    99      32.725  20.631  28.285  1.00 25.00           C
ATOM    100  CA  ALA   100      30.153  23.469  28.319  1.00 25.00           C
ATOM    101  CA  ARG   101      32.216  25.403  25.737  1.00 25.00           C
ATOM    102  CA  LEU   102      32.410  22.286  23.520  1.00 25.00           C
ATOM    103  CA  ALA   103      28.618  21.826  23.794  1.00 25.00           C
ATOM    104  CA  VAL   104      28.079  25.495  22.836  1.00 25.00           C
ATOM    105  CA  ARG   105      30.397  25.073  19.816  1.00 25.00           C
ATOM    106  CA  MET   106      28.469  21.943  18.743  1.00 25.00           C
ATOM    107  CA  GLU   107      25.159  23.844  19.056  1.00 25.00           C
ATOM    108  CA  ASN   108      26.575  26.706  16.941  1.00 25.00           C
ATOM    109  CA  ASP   109      27.732  24.203  14.284  1.00 25.00           C
ATOM    110  CA  GLY   110      24.252  22.603  14.242  1.00 25.00           C
ATOM    111  CA  ALA   111      22.642  26.054  13.835  1.00 25.00           C
ATOM    112  CA  THR   112      25.019  26.848  10.939  1.00 25.00           C
ATOM    113  CA  ALA   113      24.141  23.514   9.272  1.00 25.00           C
ATOM    114  CA  TRP   114      20.409  24.270   9.668  1.00 25.00           C
ATOM    115  CA  ARG   115      20.921  27.734   8.118  1.00 25.00           C
ATOM    116  CA  ALA   116      22.815  26.167   5.181  1.00 25.00           C
ATOM    117  CA  VAL   117      19.983  23.639   4.672  1.00 25.00           C
ATOM    118  CA  VAL   118      17.411  26.477   4.706  1.00 25.00           C
ATOM    119  CA  GLU   119      19.474  28.411   2.125  1.00 25.00           C
ATOM    120  CA  HIS   120      19.668  25.295  -0.093  1.00 25.00           C
ATOM    121  CA  ALA   121      15.876  24.834   0.180  1.00 25.00           C
ATOM    122  CA  GLU   122      15.178  22.765   3.328  1.00 25.00           C
ATOM    123  CA  THR   123      15.729  21.564   6.913  1.00 25.00           C
ATOM    124  CA  ALA   124      16.340  21.238  10.713  1.00 25.00           C
ATOM    125  CA  ASP   125      16.974  20.076  14.287  1.00 25.00           C
ATOM    126  CA  ASP   126      16.142  18.036  17.420  1.00 25.00           C
ATOM    127  CA  ARG   127      19.849  17.195  17.887  1.00 25.00           C
ATOM    128  CA  VAL   128      20.759  20.898  17.534  1.00 25.00           C
ATOM    129  CA  PHE   129      18.101  21.824  20.132  1.00 25.00           C
ATOM    130  CA  ALA   130      19.479  19.170  22.524  1.00 25.00           C
ATOM    131  CA  SER   131      23.023  20.537  22.038  1.00 25.00           C
ATOM    132  CA  THR   132      21.779  24.086  22.757  1.00 25.00           C
ATOM    133  CA  ALA   133      20.031  22.857  25.935  1.00 25.00           C
ATOM    134  CA  LEU   134      23.247  21.104  27.055  1.00 25.00           C
ATOM    135  CA  THR   135      25.243  24.313  26.430  1.00 25.00           C
ATOM    136  CA  GLU   136      22.698  26.322  28.470  1.00 25.00           C
ATOM    137  CA  SER   137      22.951  23.786  31.328  1.00 25.00           C
ATOM    138  CA  ALA   138      26.772  24.028  31.238  1.00 25.00           C
ATOM    139  CA  VAL   139      26.557  27.850  31.352  1.00 25.00           C
ATOM    140  CA  MET   140      24.175  27.651  34.345  1.00 25.00           C
ATOM    141  CA  ALA   141      26.583  25.268  36.134  1.00 25.00           C
ATOM    142  CA  THR   142      29.493  27.666  35.462  1.00 25.00           C
ATOM    143  CA  ARG   143      27.440  30.585  36.850  1.00 25.00           C
ATOM    144  CA  TRP   144      26.608  28.544  39.981  1.00 25.00           C
ATOM    145  CA  ASN   145      30.314  27.704  40.448  1.00 25.00           C
ATOM    146  CA  ARG   146      31.141  30.960  42.237  1.00 25.00           C
ATOM    147  CA  VAL   147      28.453  30.960  44.897  1.00 25.00           C
ATOM    148  CA  LEU   148      27.335  27.445  45.883  1.00 25.00           C
ATOM    149  CA  GLY   149      27.131  27.093  49.650  1.00 25.00           C
ATOM    150  CA  ALA   150      28.797  23.899  50.926  1.00 25.00           C
ATOM    151  CA  TRP   151      26.425  24.083  53.956  1.00 25.00           C
ATOM    152  CA  PRO   152      29.468  24.668  56.224  1.00 25.00           C
ATOM    153  CA  ILE   153      33.172  25.158  56.988  1.00 25.00           C
ATOM    154  CA  THR   154      35.432  26.747  59.658  1.00 25.00           C
ATOM    155  CA  ALA   155      35.918  28.238  63.125  1.00 25.00           C
ATOM    156  CA  ALA   156      37.283  25.277  65.097  1.00 25.00           C
ATOM    157  CA  PHE   157      36.627  21.658  64.246  1.00 25.00           C
ATOM    158  CA  PRO   158      40.124  20.294  64.498  1.00 25.00           C
ATOM    159  CA  GLY   159      43.423  18.686  63.548  1.00 25.00           C
ATOM    160  CA  GLY   160      46.312  17.987  61.227  1.00 25.00           C
ATOM    161  CA  ASP   161      48.412  18.905  58.141  1.00 25.00           C
ATOM    162  CA  GLU   162      46.964  21.821  56.168  1.00 25.00           C
TER
END
