
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  162 (  162),  selected  142 , name T0385TS168_2
# Molecule2: number of CA atoms  142 ( 1050),  selected  142 , name T0385.pdb
# PARAMETERS: T0385TS168_2.T0385.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        84 - 121         4.99    21.94
  LONGEST_CONTINUOUS_SEGMENT:    38        85 - 122         4.77    22.27
  LONGEST_CONTINUOUS_SEGMENT:    38        86 - 123         4.63    22.66
  LCS_AVERAGE:     24.08

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        94 - 121         1.82    20.00
  LONGEST_CONTINUOUS_SEGMENT:    28        95 - 122         1.57    18.94
  LCS_AVERAGE:     14.32

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        50 - 75          0.94    16.34
  LONGEST_CONTINUOUS_SEGMENT:    26        96 - 121         0.76    18.62
  LCS_AVERAGE:     12.06

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     S      17     S      17      3    4   29     3    3    6    9   12   17   25   32   34   43   45   51   54   55   58   59   63   65   66   68 
LCS_GDT     E      18     E      18      3    4   29     3    3    3    5   10   16   21   28   33   45   50   52   54   55   57   59   63   65   66   68 
LCS_GDT     G      19     G      19      3   20   29     3    3    3    8   11   16   21   28   33   45   50   52   54   55   58   59   63   65   66   68 
LCS_GDT     S      20     S      20     19   21   29     3    3    3   16   29   40   46   49   49   51   53   54   57   59   61   63   66   68   69   69 
LCS_GDT     A      21     A      21     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   66   68   71   72 
LCS_GDT     D      22     D      22     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     N      23     N      23     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     A      24     A      24     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     A      25     A      25     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     L      26     L      26     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     C      27     C      27     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     D      28     D      28     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     A      29     A      29     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     L      30     L      30     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     A      31     A      31     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     V      32     V      32     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     E      33     E      33     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   71   80   82 
LCS_GDT     H      34     H      34     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   71   80   82 
LCS_GDT     A      35     A      35     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   74   82 
LCS_GDT     T      36     T      36     19   21   29    17   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   74   80   82 
LCS_GDT     I      37     I      37     19   21   29    17   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     Y      38     Y      38     19   21   29    18   24   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     G      39     G      39      4   21   29     3    5    5   10   19   27   34   40   45   47   51   54   57   59   61   64   67   74   78   81 
LCS_GDT     Y      40     Y      40      4   21   29     3    5    7    9   15   17   23   32   39   44   50   52   57   58   61   63   66   74   78   82 
LCS_GDT     G      41     G      41      3    5   29     3    4    4    5    6    8   10   15   20   33   40   49   53   55   57   63   68   74   80   82 
LCS_GDT     I      42     I      42      3    4   29     3    3    3    3    5    7    9   14   17   22   27   34   39   44   50   51   57   61   71   77 
LCS_GDT     V      43     V      43      3    4   29     0    3    3    3    4    7    9   10   15   17   21   25   31   38   42   49   53   56   62   64 
LCS_GDT     S      44     S      44      3    7   33     3    3    3    6    6    9   11   14   15   21   27   36   43   46   50   51   57   59   64   65 
LCS_GDT     A      45     A      45      3    7   33     3    3    4    6    7    8    8   11   14   17   28   28   28   30   33   35   38   40   49   52 
LCS_GDT     L      46     L      46      5    7   33     3    4    5    6    7    8    9   11   14   17   23   23   29   33   35   37   41   46   53   56 
LCS_GDT     S      47     S      47      5    7   33     2    4    5    7    8    9   13   15   19   26   34   36   43   46   50   52   57   59   64   69 
LCS_GDT     P      48     P      48      5    7   33     1    4    5    7    8   12   15   20   30   33   40   45   49   50   55   58   61   65   66   69 
LCS_GDT     P      49     P      49      5    7   36     3    4    5    7    8   25   32   36   42   47   50   52   54   58   60   63   66   68   68   69 
LCS_GDT     G      50     G      50     26   27   37     3    4    7   30   39   41   48   49   49   51   53   55   58   60   61   64   67   68   71   74 
LCS_GDT     V      51     V      51     26   27   37    12   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   70   76   82 
LCS_GDT     N      52     N      52     26   27   37    16   25   26   29   40   44   48   49   49   51   53   55   58   60   62   64   67   74   80   82 
LCS_GDT     F      53     F      53     26   27   37    12   25   26   26   28   35   48   49   49   51   53   55   58   60   62   64   67   70   76   82 
LCS_GDT     L      54     L      54     26   27   37    12   25   26   33   41   44   48   49   49   51   53   55   58   60   62   64   67   70   79   82 
LCS_GDT     V      55     V      55     26   27   37    14   25   26   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     A      56     A      56     26   27   37    16   25   26   26   35   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     D      57     D      57     26   27   37    12   25   26   26   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     A      58     A      58     26   27   37    18   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     L      59     L      59     26   27   37    16   25   26   29   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     K      60     K      60     26   27   37    16   25   26   26   40   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     Q      61     Q      61     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     H      62     H      62     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     R      63     R      63     26   27   37    16   25   26   26   41   44   48   49   49   51   53   55   58   60   62   64   68   72   80   82 
LCS_GDT     H      64     H      64     26   27   37    16   25   26   33   41   44   48   49   49   51   53   55   58   60   62   64   67   72   80   82 
LCS_GDT     R      65     R      65     26   27   37    18   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   68   72   80   82 
LCS_GDT     R      66     R      66     26   27   37    16   25   26   26   41   44   48   49   49   51   53   55   58   60   62   64   67   69   80   82 
LCS_GDT     D      67     D      67     26   27   37    16   25   26   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   76 
LCS_GDT     D      68     D      68     26   27   37    15   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   75 
LCS_GDT     V      69     V      69     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   75 
LCS_GDT     I      70     I      70     26   27   37    16   25   26   26   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     V      71     V      71     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     M      72     M      72     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     L      73     L      73     26   27   37    15   25   26   32   41   44   48   49   49   51   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     S      74     S      74     26   27   37    15   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     A      75     A      75     26   27   37    16   25   28   33   41   44   48   49   49   51   53   55   58   60   62   64   67   68   71   73 
LCS_GDT     R      76     R      76      4   27   37     3    3    5   12   21   29   34   42   48   50   53   55   58   60   62   64   67   69   71   73 
LCS_GDT     G      77     G      77      5    8   37     1    4    6    7   10   12   14   17   32   42   48   54   58   60   62   64   67   69   71   73 
LCS_GDT     V      78     V      78      5    8   37     4    5    6    7   11   15   19   24   28   39   41   44   52   55   59   64   67   71   80   82 
LCS_GDT     T      79     T      79      5    8   37     4    5    6    7   10   12   14   21   27   39   41   44   49   55   56   60   68   74   80   82 
LCS_GDT     A      80     A      80      5    8   37     4    5    6    7   10   12   14   17   22   29   34   42   46   51   53   60   68   74   80   82 
LCS_GDT     P      81     P      81      5    8   37     4    5    6    7   10   12   14   17   20   22   27   34   37   42   51   60   68   74   80   82 
LCS_GDT     I      82     I      82      3    8   37     0    3    4    5    8   12   14   17   20   22   26   32   35   38   48   60   68   74   80   82 
LCS_GDT     A      83     A      83      3    6   37     3    4    6    7    7    9   13   17   20   25   28   32   35   38   39   41   50   61   73   77 
LCS_GDT     A      84     A      84      3    6   38     3    4    6    7    7    9   13   15   20   25   28   32   35   38   39   41   41   44   51   57 
LCS_GDT     A      85     A      85      3    6   38     3    4    4    5    5    8   10   12   17   22   26   32   35   38   39   41   41   44   51   57 
LCS_GDT     G      86     G      86      3    6   38     3    3   13   26   28   29   29   29   30   31   31   32   35   38   39   41   41   44   49   55 
LCS_GDT     Y      87     Y      87      3    6   38     3    4    9   18   25   29   29   30   31   31   32   33   33   36   39   41   41   43   48   51 
LCS_GDT     Q      88     Q      88      3    6   38     3    3    4    5    6   18   26   30   31   31   32   33   33   35   37   40   41   43   43   46 
LCS_GDT     L      89     L      89      3    6   38     3    3    4    7    8    9   15   19   27   29   32   33   33   34   36   38   39   41   42   45 
LCS_GDT     P      90     P      90      3    5   38     3    3    3    4    5    8   10   14   17   25   32   33   33   34   35   36   36   41   45   51 
LCS_GDT     M      91     M      91      3    7   38     3    3    3    5    6    8   10   11   14   17   21   24   33   34   34   36   36   48   52   56 
LCS_GDT     Q      92     Q      92      3    7   38     3    3    4    5    7   13   22   30   31   31   32   33   33   34   35   36   36   41   47   51 
LCS_GDT     V      93     V      93      3    7   38     3    3    3    5    8   19   26   30   31   31   32   33   33   34   35   36   36   38   44   49 
LCS_GDT     S      94     S      94      3   28   38     1    3    4    5    8   11   26   30   31   31   32   33   33   34   35   36   36   38   40   49 
LCS_GDT     S      95     S      95      3   28   38     1    3    7   25   28   29   29   30   31   31   32   33   33   34   35   38   44   49   62   73 
LCS_GDT     A      96     A      96     26   28   38     4    7   25   26   28   29   29   30   31   31   32   33   33   34   40   52   63   71   79   82 
LCS_GDT     A      97     A      97     26   28   38     4    4   11   26   28   29   29   30   31   31   32   33   33   34   39   48   58   71   77   82 
LCS_GDT     D      98     D      98     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A      99     A      99     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   50   60   68   74   80   82 
LCS_GDT     A     100     A     100     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     R     101     R     101     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     L     102     L     102     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A     103     A     103     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     V     104     V     104     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     R     105     R     105     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     M     106     M     106     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     E     107     E     107     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     N     108     N     108     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     D     109     D     109     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     G     110     G     110     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A     111     A     111     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     T     112     T     112     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A     113     A     113     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     W     114     W     114     26   28   38    17   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     R     115     R     115     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A     116     A     116     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     V     117     V     117     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     V     118     V     118     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   38   47   58   68   74   80   82 
LCS_GDT     E     119     E     119     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   38   48   60   68   74   80   82 
LCS_GDT     H     120     H     120     26   28   38    16   23   25   26   28   29   29   30   31   31   32   33   33   42   51   60   68   74   80   82 
LCS_GDT     A     121     A     121     26   28   38     4   18   25   26   28   29   29   30   31   31   32   33   33   36   46   57   68   74   80   82 
LCS_GDT     E     122     E     122      3   28   38     3    3    4    5    6   12   24   27   29   30   32   38   44   50   51   60   68   74   80   82 
LCS_GDT     T     123     T     123      3   25   38     1    3    4    5    5   11   20   23   27   39   41   44   49   55   56   61   68   74   80   82 
LCS_GDT     A     124     A     124     23   25   34     0    3    4    8   22   23   23   24   28   39   41   49   52   57   60   63   68   74   80   82 
LCS_GDT     D     125     D     125     23   25   34    21   22   22   22   22   23   23   24   30   39   44   49   57   60   62   64   68   74   80   82 
LCS_GDT     D     126     D     126     23   25   34    21   22   22   22   22   23   23   24   24   39   41   44   49   55   56   61   68   74   80   82 
LCS_GDT     R     127     R     127     23   25   33    21   22   22   22   22   23   23   24   27   39   41   44   50   55   60   63   68   74   80   82 
LCS_GDT     V     128     V     128     23   25   33    21   22   26   26   28   35   42   47   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     F     129     F     129     23   25   33    21   22   22   22   22   23   23   24   27   39   41   52   56   58   62   64   68   74   80   82 
LCS_GDT     A     130     A     130     23   25   33    21   22   22   22   22   23   23   24   26   39   41   45   52   57   60   63   68   74   80   82 
LCS_GDT     S     131     S     131     23   25   33    21   22   22   22   28   35   38   46   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     T     132     T     132     23   25   33    21   22   22   22   32   42   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     A     133     A     133     23   25   33    21   22   22   22   22   23   23   24   24   39   42   52   57   60   62   64   68   74   80   82 
LCS_GDT     L     134     L     134     23   25   33    21   22   22   23   28   35   38   46   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     T     135     T     135     23   25   33    21   22   23   32   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     E     136     E     136     23   25   33    21   22   22   22   22   24   26   31   44   49   52   55   58   60   62   64   68   74   80   82 
LCS_GDT     S     137     S     137     23   25   33    21   22   22   22   23   29   31   36   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     A     138     A     138     23   25   33    21   22   22   31   41   44   48   49   49   51   53   55   58   60   62   64   68   74   80   82 
LCS_GDT     V     139     V     139     23   25   33    21   22   22   22   22   23   23   31   38   46   52   55   58   60   62   64   68   74   80   82 
LCS_GDT     M     140     M     140     23   25   33    21   22   22   22   22   23   23   24   38   44   50   53   56   60   62   64   68   74   80   82 
LCS_GDT     A     141     A     141     23   25   33    21   22   22   24   34   44   48   49   49   51   53   55   58   60   62   64   67   74   80   82 
LCS_GDT     T     142     T     142     23   25   33    21   22   22   22   22   23   23   28   33   44   50   55   58   60   62   64   68   74   80   82 
LCS_GDT     R     143     R     143     23   25   33    21   22   22   22   22   23   23   25   33   39   43   49   54   56   57   63   68   74   80   82 
LCS_GDT     W     144     W     144     23   25   33    21   22   22   22   22   23   25   31   39   46   50   54   57   60   62   64   68   74   80   82 
LCS_GDT     N     145     N     145     23   25   33    21   22   22   22   22   23   28   34   45   50   53   55   58   60   62   64   67   74   80   82 
LCS_GDT     R     146     R     146     23   25   33    21   22   22   22   22   23   23   25   33   39   43   49   51   55   57   63   68   74   80   82 
LCS_GDT     V     147     V     147      4   25   33     3    6    9   14   18   23   23   24   24   32   36   44   48   55   56   61   68   74   80   82 
LCS_GDT     L     148     L     148      4    4   33     3    3    5    5    5    7   12   18   24   32   36   43   48   55   56   61   68   74   80   82 
LCS_GDT     G     149     G     149      4    8   33     3    3    5    7   10   13   18   18   24   32   36   43   45   51   56   60   68   74   80   82 
LCS_GDT     A     150     A     150      4    8   33     3    3    5    5    7   10   15   19   23   24   25   30   36   42   51   60   68   74   80   82 
LCS_GDT     W     151     W     151      3    8   33     3    3    4    5    7    8    9   10   12   14   16   19   36   45   51   60   68   74   80   82 
LCS_GDT     P     152     P     152      5    8   33     3    4    6    7    8   12   14   18   24   32   36   43   45   50   52   60   68   74   80   82 
LCS_GDT     I     153     I     153      6    8   33     3    4    6    7    7    9   13   19   24   32   39   44   48   55   56   61   66   72   80   82 
LCS_GDT     T     154     T     154      6    8   33     3    5    6    7    7    8    8   19   24   32   36   43   48   55   56   61   66   69   76   82 
LCS_GDT     A     155     A     155      6    8   18     3    5    6    7    7    8    8    9   10   12   13   15   33   35   56   61   66   69   69   71 
LCS_GDT     A     156     A     156      6    8   17     3    5    6    7    7    8    8    9   10   12   13   15   33   35   39   61   66   69   69   71 
LCS_GDT     F     157     F     157      6    7   16     3    5    6    7    7    7    8   19   23   36   40   44   48   55   56   61   66   69   79   82 
LCS_GDT     P     158     P     158      6    7   16     3    5    6    7    7    7    8    9   10   11   12   13   33   50   56   61   66   69   69   71 
LCS_AVERAGE  LCS_A:  16.82  (  12.06   14.32   24.08 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     28     33     41     44     48     49     49     51     53     55     58     60     62     64     68     74     80     82 
GDT PERCENT_CA  14.79  17.61  19.72  23.24  28.87  30.99  33.80  34.51  34.51  35.92  37.32  38.73  40.85  42.25  43.66  45.07  47.89  52.11  56.34  57.75
GDT RMS_LOCAL    0.25   0.58   0.77   1.08   1.53   1.70   1.92   1.98   1.98   2.27   2.50   2.89   3.30   3.52   3.86   4.02   6.85   7.11   7.31   7.40
GDT RMS_ALL_CA  24.32  16.24  16.41  16.47  16.39  16.36  16.29  16.38  16.38  16.24  16.17  15.84  15.69  15.56  15.38  15.46  14.91  14.69  14.44  14.44

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17         10.682
LGA    E      18      E      18         11.493
LGA    G      19      G      19         10.088
LGA    S      20      S      20          3.713
LGA    A      21      A      21          1.608
LGA    D      22      D      22          1.172
LGA    N      23      N      23          0.998
LGA    A      24      A      24          1.370
LGA    A      25      A      25          1.091
LGA    L      26      L      26          0.954
LGA    C      27      C      27          1.001
LGA    D      28      D      28          1.130
LGA    A      29      A      29          1.011
LGA    L      30      L      30          1.029
LGA    A      31      A      31          1.348
LGA    V      32      V      32          1.260
LGA    E      33      E      33          1.250
LGA    H      34      H      34          1.374
LGA    A      35      A      35          1.615
LGA    T      36      T      36          1.701
LGA    I      37      I      37          1.685
LGA    Y      38      Y      38          1.773
LGA    G      39      G      39          7.244
LGA    Y      40      Y      40          8.417
LGA    G      41      G      41         11.054
LGA    I      42      I      42         16.533
LGA    V      43      V      43         18.131
LGA    S      44      S      44         16.916
LGA    A      45      A      45         21.055
LGA    L      46      L      46         22.264
LGA    S      47      S      47         16.432
LGA    P      48      P      48         14.679
LGA    P      49      P      49          9.944
LGA    G      50      G      50          3.205
LGA    V      51      V      51          0.760
LGA    N      52      N      52          3.115
LGA    F      53      F      53          3.715
LGA    L      54      L      54          1.681
LGA    V      55      V      55          1.733
LGA    A      56      A      56          3.311
LGA    D      57      D      57          2.589
LGA    A      58      A      58          0.763
LGA    L      59      L      59          2.401
LGA    K      60      K      60          2.749
LGA    Q      61      Q      61          1.190
LGA    H      62      H      62          1.515
LGA    R      63      R      63          2.431
LGA    H      64      H      64          1.423
LGA    R      65      R      65          0.698
LGA    R      66      R      66          2.192
LGA    D      67      D      67          1.894
LGA    D      68      D      68          0.256
LGA    V      69      V      69          1.803
LGA    I      70      I      70          2.396
LGA    V      71      V      71          0.917
LGA    M      72      M      72          1.309
LGA    L      73      L      73          2.262
LGA    S      74      S      74          1.322
LGA    A      75      A      75          0.960
LGA    R      76      R      76          7.863
LGA    G      77      G      77         10.499
LGA    V      78      V      78         14.155
LGA    T      79      T      79         16.955
LGA    A      80      A      80         16.420
LGA    P      81      P      81         20.577
LGA    I      82      I      82         17.643
LGA    A      83      A      83         20.823
LGA    A      84      A      84         27.495
LGA    A      85      A      85         27.516
LGA    G      86      G      86         30.044
LGA    Y      87      Y      87         29.695
LGA    Q      88      Q      88         34.329
LGA    L      89      L      89         30.752
LGA    P      90      P      90         26.620
LGA    M      91      M      91         25.692
LGA    Q      92      Q      92         24.645
LGA    V      93      V      93         23.670
LGA    S      94      S      94         23.214
LGA    S      95      S      95         19.525
LGA    A      96      A      96         19.902
LGA    A      97      A      97         22.927
LGA    D      98      D      98         20.407
LGA    A      99      A      99         17.551
LGA    A     100      A     100         18.443
LGA    R     101      R     101         20.444
LGA    L     102      L     102         19.019
LGA    A     103      A     103         17.177
LGA    V     104      V     104         19.061
LGA    R     105      R     105         20.874
LGA    M     106      M     106         19.068
LGA    E     107      E     107         18.000
LGA    N     108      N     108         20.851
LGA    D     109      D     109         22.081
LGA    G     110      G     110         19.974
LGA    A     111      A     111         20.106
LGA    T     112      T     112         23.430
LGA    A     113      A     113         23.513
LGA    W     114      W     114         21.479
LGA    R     115      R     115         23.081
LGA    A     116      A     116         25.541
LGA    V     117      V     117         24.322
LGA    V     118      V     118         23.252
LGA    E     119      E     119         26.410
LGA    H     120      H     120         28.204
LGA    A     121      A     121         26.254
LGA    E     122      E     122         23.887
LGA    T     123      T     123         18.506
LGA    A     124      A     124         14.718
LGA    D     125      D     125         10.780
LGA    D     126      D     126         15.453
LGA    R     127      R     127         13.624
LGA    V     128      V     128          6.700
LGA    F     129      F     129          9.429
LGA    A     130      A     130         11.595
LGA    S     131      S     131          7.031
LGA    T     132      T     132          3.513
LGA    A     133      A     133          8.271
LGA    L     134      L     134          6.709
LGA    T     135      T     135          2.325
LGA    E     136      E     136          5.842
LGA    S     137      S     137          5.727
LGA    A     138      A     138          2.449
LGA    V     139      V     139          6.722
LGA    M     140      M     140          8.111
LGA    A     141      A     141          3.447
LGA    T     142      T     142          7.720
LGA    R     143      R     143         11.942
LGA    W     144      W     144          9.528
LGA    N     145      N     145          7.417
LGA    R     146      R     146         13.850
LGA    V     147      V     147         19.759
LGA    L     148      L     148         20.676
LGA    G     149      G     149         23.309
LGA    A     150      A     150         27.446
LGA    W     151      W     151         29.149
LGA    P     152      P     152         29.057
LGA    I     153      I     153         26.267
LGA    T     154      T     154         29.488
LGA    A     155      A     155         27.538
LGA    A     156      A     156         30.683
LGA    F     157      F     157         30.080
LGA    P     158      P     158         28.364

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  162  142    4.0     49    1.98    30.106    27.138     2.352

LGA_LOCAL      RMSD =  1.983  Number of atoms =   49  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.381  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 12.790  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.834285 * X  +   0.441740 * Y  +   0.329901 * Z  +  26.793291
  Y_new =  -0.423365 * X  +   0.129992 * Y  +   0.896585 * Z  +  17.778711
  Z_new =   0.353173 * X  +  -0.887676 * Y  +   0.295468 * Z  +  26.847376 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.249476    1.892117  [ DEG:   -71.5897    108.4103 ]
  Theta =  -0.360960   -2.780633  [ DEG:   -20.6815   -159.3185 ]
  Phi   =  -0.469597    2.671996  [ DEG:   -26.9059    153.0941 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS168_2                                  
REMARK     2: T0385.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS168_2.T0385.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  162  142   4.0   49   1.98  27.138    12.79
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS168_2
PFRMAT TS
TARGET T0385
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1       3.647  12.267  10.275  1.00 25.00           C
ATOM      2  CA  THR     2       2.220   9.199  12.089  1.00 25.00           C
ATOM      3  CA  SER     3       1.224   6.192  14.132  1.00 25.00           C
ATOM      4  CA  SER     4       2.319   3.042  15.927  1.00 25.00           C
ATOM      5  CA  GLU     5       5.904   4.164  16.305  1.00 25.00           C
ATOM      6  CA  PRO     6       9.369   2.600  16.830  1.00 25.00           C
ATOM      7  CA  ALA     7       8.723   2.653  20.635  1.00 25.00           C
ATOM      8  CA  HIS     8       8.701   4.446  24.035  1.00 25.00           C
ATOM      9  CA  GLY     9       9.374   1.490  26.381  1.00 25.00           C
ATOM     10  CA  ALA    10       8.410   2.089  29.989  1.00 25.00           C
ATOM     11  CA  THR    11       9.164   5.257  31.967  1.00 25.00           C
ATOM     12  CA  PRO    12       7.031   6.958  34.653  1.00 25.00           C
ATOM     13  CA  LYS    13       7.087  10.160  36.696  1.00 25.00           C
ATOM     14  CA  ARG    14       6.825  13.939  37.328  1.00 25.00           C
ATOM     15  CA  SER    15      10.481  13.536  38.352  1.00 25.00           C
ATOM     16  CA  PRO    16       9.748  16.653  40.400  1.00 25.00           C
ATOM     17  CA  SER    17      12.458  15.521  42.742  1.00 25.00           C
ATOM     18  CA  GLU    18      13.151  12.789  45.242  1.00 25.00           C
ATOM     19  CA  GLY    19      16.835  13.285  44.427  1.00 25.00           C
ATOM     20  CA  SER    20      20.468  12.919  45.500  1.00 25.00           C
ATOM     21  CA  ALA    21      22.265  13.750  42.309  1.00 25.00           C
ATOM     22  CA  ASP    22      25.312  15.547  40.843  1.00 25.00           C
ATOM     23  CA  ASN    23      27.049  12.183  40.265  1.00 25.00           C
ATOM     24  CA  ALA    24      23.916  10.836  38.523  1.00 25.00           C
ATOM     25  CA  ALA    25      23.784  13.951  36.298  1.00 25.00           C
ATOM     26  CA  LEU    26      27.481  13.499  35.405  1.00 25.00           C
ATOM     27  CA  CYS    27      26.846   9.824  34.533  1.00 25.00           C
ATOM     28  CA  ASP    28      23.887  10.835  32.321  1.00 25.00           C
ATOM     29  CA  ALA    29      26.068  13.441  30.553  1.00 25.00           C
ATOM     30  CA  LEU    30      28.786  10.807  29.971  1.00 25.00           C
ATOM     31  CA  ALA    31      26.179   8.398  28.532  1.00 25.00           C
ATOM     32  CA  VAL    32      24.883  11.151  26.206  1.00 25.00           C
ATOM     33  CA  GLU    33      28.458  11.886  25.044  1.00 25.00           C
ATOM     34  CA  HIS    34      29.030   8.160  24.366  1.00 25.00           C
ATOM     35  CA  ALA    35      25.774   8.002  22.356  1.00 25.00           C
ATOM     36  CA  THR    36      26.850  11.065  20.324  1.00 25.00           C
ATOM     37  CA  ILE    37      30.250   9.442  19.632  1.00 25.00           C
ATOM     38  CA  TYR    38      28.510   6.225  18.496  1.00 25.00           C
ATOM     39  CA  GLY    39      31.215   6.970  15.865  1.00 25.00           C
ATOM     40  CA  TYR    40      34.573   7.933  17.436  1.00 25.00           C
ATOM     41  CA  GLY    41      35.865   9.038  20.888  1.00 25.00           C
ATOM     42  CA  ILE    42      38.397  11.467  19.496  1.00 25.00           C
ATOM     43  CA  VAL    43      39.332  15.167  20.078  1.00 25.00           C
ATOM     44  CA  SER    44      38.852  18.482  18.210  1.00 25.00           C
ATOM     45  CA  ALA    45      36.454  21.355  18.405  1.00 25.00           C
ATOM     46  CA  LEU    46      37.438  22.866  15.008  1.00 25.00           C
ATOM     47  CA  SER    47      35.701  22.052  11.725  1.00 25.00           C
ATOM     48  CA  PRO    48      36.365  20.756   8.210  1.00 25.00           C
ATOM     49  CA  PRO    49      34.381  19.590   5.254  1.00 25.00           C
ATOM     50  CA  GLY    50      31.937  17.221   3.597  1.00 25.00           C
ATOM     51  CA  VAL    51      28.891  18.048   5.767  1.00 25.00           C
ATOM     52  CA  ASN    52      28.720  14.412   6.957  1.00 25.00           C
ATOM     53  CA  PHE    53      32.451  14.493   7.820  1.00 25.00           C
ATOM     54  CA  LEU    54      31.951  17.747   9.777  1.00 25.00           C
ATOM     55  CA  VAL    55      29.020  16.181  11.681  1.00 25.00           C
ATOM     56  CA  ALA    56      31.163  13.117  12.509  1.00 25.00           C
ATOM     57  CA  ASP    57      33.976  15.393  13.766  1.00 25.00           C
ATOM     58  CA  ALA    58      31.481  17.312  15.947  1.00 25.00           C
ATOM     59  CA  LEU    59      30.160  14.015  17.380  1.00 25.00           C
ATOM     60  CA  LYS    60      33.739  12.887  18.147  1.00 25.00           C
ATOM     61  CA  GLN    61      34.443  16.221  19.895  1.00 25.00           C
ATOM     62  CA  HIS    62      31.245  15.837  21.968  1.00 25.00           C
ATOM     63  CA  ARG    63      32.277  12.281  22.947  1.00 25.00           C
ATOM     64  CA  HIS    64      35.741  13.546  23.981  1.00 25.00           C
ATOM     65  CA  ARG    65      34.132  16.308  26.089  1.00 25.00           C
ATOM     66  CA  ARG    66      31.853  13.730  27.770  1.00 25.00           C
ATOM     67  CA  ASP    67      34.880  11.509  28.525  1.00 25.00           C
ATOM     68  CA  ASP    68      36.734  14.504  30.028  1.00 25.00           C
ATOM     69  CA  VAL    69      33.688  15.331  32.198  1.00 25.00           C
ATOM     70  CA  ILE    70      33.518  11.695  33.388  1.00 25.00           C
ATOM     71  CA  VAL    71      37.247  11.776  34.252  1.00 25.00           C
ATOM     72  CA  MET    72      36.748  15.029  36.209  1.00 25.00           C
ATOM     73  CA  LEU    73      33.817  13.464  38.112  1.00 25.00           C
ATOM     74  CA  SER    74      35.960  10.399  38.941  1.00 25.00           C
ATOM     75  CA  ALA    75      38.773  12.676  40.196  1.00 25.00           C
ATOM     76  CA  ARG    76      41.020   9.951  38.713  1.00 25.00           C
ATOM     77  CA  GLY    77      42.105   8.498  35.350  1.00 25.00           C
ATOM     78  CA  VAL    78      43.462  11.007  32.750  1.00 25.00           C
ATOM     79  CA  THR    79      45.763  13.527  31.047  1.00 25.00           C
ATOM     80  CA  ALA    80      43.427  16.152  29.586  1.00 25.00           C
ATOM     81  CA  PRO    81      43.869  15.904  25.790  1.00 25.00           C
ATOM     82  CA  ILE    82      40.135  16.589  25.285  1.00 25.00           C
ATOM     83  CA  ALA    83      40.357  19.637  27.593  1.00 25.00           C
ATOM     84  CA  ALA    84      43.382  20.932  25.634  1.00 25.00           C
ATOM     85  CA  ALA    85      42.495  20.609  21.971  1.00 25.00           C
ATOM     86  CA  GLY    86      43.210  22.239  18.592  1.00 25.00           C
ATOM     87  CA  TYR    87      40.511  24.703  19.593  1.00 25.00           C
ATOM     88  CA  GLN    88      40.725  28.117  17.891  1.00 25.00           C
ATOM     89  CA  LEU    89      37.324  29.834  17.324  1.00 25.00           C
ATOM     90  CA  PRO    90      35.173  26.888  18.520  1.00 25.00           C
ATOM     91  CA  MET    91      31.417  27.344  19.003  1.00 25.00           C
ATOM     92  CA  GLN    92      30.573  23.724  18.030  1.00 25.00           C
ATOM     93  CA  VAL    93      31.742  21.157  20.582  1.00 25.00           C
ATOM     94  CA  SER    94      28.115  20.016  20.323  1.00 25.00           C
ATOM     95  CA  SER    95      24.841  18.229  19.741  1.00 25.00           C
ATOM     96  CA  ALA    96      22.263  18.551  22.464  1.00 25.00           C
ATOM     97  CA  ALA    97      21.636  18.297  26.234  1.00 25.00           C
ATOM     98  CA  ASP    98      24.559  15.847  26.579  1.00 25.00           C
ATOM     99  CA  ALA    99      26.824  18.233  24.619  1.00 25.00           C
ATOM    100  CA  ALA   100      25.767  21.136  26.882  1.00 25.00           C
ATOM    101  CA  ARG   101      26.522  19.022  29.986  1.00 25.00           C
ATOM    102  CA  LEU   102      29.969  18.135  28.572  1.00 25.00           C
ATOM    103  CA  ALA   103      30.669  21.837  27.888  1.00 25.00           C
ATOM    104  CA  VAL   104      29.632  22.720  31.468  1.00 25.00           C
ATOM    105  CA  ARG   105      31.945  19.992  32.836  1.00 25.00           C
ATOM    106  CA  MET   106      34.832  21.337  30.711  1.00 25.00           C
ATOM    107  CA  GLU   107      34.169  24.880  32.008  1.00 25.00           C
ATOM    108  CA  ASN   108      34.165  23.584  35.613  1.00 25.00           C
ATOM    109  CA  ASP   109      37.482  21.773  34.992  1.00 25.00           C
ATOM    110  CA  GLY   110      38.986  24.979  33.532  1.00 25.00           C
ATOM    111  CA  ALA   111      37.800  26.957  36.589  1.00 25.00           C
ATOM    112  CA  THR   112      39.360  24.345  38.916  1.00 25.00           C
ATOM    113  CA  ALA   113      42.658  24.555  36.979  1.00 25.00           C
ATOM    114  CA  TRP   114      42.605  28.374  37.253  1.00 25.00           C
ATOM    115  CA  ARG   115      41.979  28.120  41.023  1.00 25.00           C
ATOM    116  CA  ALA   116      44.901  25.669  41.368  1.00 25.00           C
ATOM    117  CA  VAL   117      47.166  28.057  39.408  1.00 25.00           C
ATOM    118  CA  VAL   118      46.108  30.958  41.672  1.00 25.00           C
ATOM    119  CA  GLU   119      46.864  28.845  44.775  1.00 25.00           C
ATOM    120  CA  HIS   120      50.312  27.957  43.361  1.00 25.00           C
ATOM    121  CA  ALA   121      51.011  31.661  42.678  1.00 25.00           C
ATOM    122  CA  GLU   122      49.846  32.314  39.131  1.00 25.00           C
ATOM    123  CA  THR   123      47.343  32.033  36.326  1.00 25.00           C
ATOM    124  CA  ALA   124      45.100  30.945  33.399  1.00 25.00           C
ATOM    125  CA  ASP   125      41.698  30.615  31.655  1.00 25.00           C
ATOM    126  CA  ASP   126      41.719  30.154  27.853  1.00 25.00           C
ATOM    127  CA  ARG   127      40.506  26.544  28.259  1.00 25.00           C
ATOM    128  CA  VAL   128      37.695  27.724  30.577  1.00 25.00           C
ATOM    129  CA  PHE   129      36.674  30.389  28.023  1.00 25.00           C
ATOM    130  CA  ALA   130      36.629  27.749  25.249  1.00 25.00           C
ATOM    131  CA  SER   131      34.456  25.466  27.423  1.00 25.00           C
ATOM    132  CA  THR   132      32.044  28.363  28.099  1.00 25.00           C
ATOM    133  CA  ALA   133      31.845  29.105  24.348  1.00 25.00           C
ATOM    134  CA  LEU   134      31.115  25.415  23.632  1.00 25.00           C
ATOM    135  CA  THR   135      28.357  25.419  26.290  1.00 25.00           C
ATOM    136  CA  GLU   136      26.835  28.573  24.739  1.00 25.00           C
ATOM    137  CA  SER   137      26.911  26.938  21.277  1.00 25.00           C
ATOM    138  CA  ALA   138      25.196  23.816  22.686  1.00 25.00           C
ATOM    139  CA  VAL   139      22.505  26.000  24.317  1.00 25.00           C
ATOM    140  CA  MET   140      21.944  27.828  20.999  1.00 25.00           C
ATOM    141  CA  ALA   141      21.619  24.474  19.178  1.00 25.00           C
ATOM    142  CA  THR   142      19.083  23.277  21.785  1.00 25.00           C
ATOM    143  CA  ARG   143      17.078  26.511  21.357  1.00 25.00           C
ATOM    144  CA  TRP   144      17.099  26.051  17.556  1.00 25.00           C
ATOM    145  CA  ASN   145      15.887  22.440  17.961  1.00 25.00           C
ATOM    146  CA  ARG   146      12.801  23.704  19.792  1.00 25.00           C
ATOM    147  CA  VAL   147      10.513  24.548  22.747  1.00 25.00           C
ATOM    148  CA  LEU   148      11.361  23.716  26.368  1.00 25.00           C
ATOM    149  CA  GLY   149       7.742  23.915  27.426  1.00 25.00           C
ATOM    150  CA  ALA   150       7.362  20.084  27.282  1.00 25.00           C
ATOM    151  CA  TRP   151       4.622  17.460  27.476  1.00 25.00           C
ATOM    152  CA  PRO   152       2.380  20.434  26.683  1.00 25.00           C
ATOM    153  CA  ILE   153      -1.330  19.982  25.739  1.00 25.00           C
ATOM    154  CA  THR   154      -4.319  20.890  27.922  1.00 25.00           C
ATOM    155  CA  ALA   155      -7.784  19.381  28.142  1.00 25.00           C
ATOM    156  CA  ALA   156      -9.328  19.759  31.582  1.00 25.00           C
ATOM    157  CA  PHE   157      -8.702  16.026  31.809  1.00 25.00           C
ATOM    158  CA  PRO   158     -12.276  15.134  32.663  1.00 25.00           C
ATOM    159  CA  GLY   159     -12.425  11.509  33.835  1.00 25.00           C
ATOM    160  CA  GLY   160     -12.759   8.420  31.687  1.00 25.00           C
ATOM    161  CA  ASP   161     -11.466   4.891  32.526  1.00 25.00           C
ATOM    162  CA  GLU   162      -7.918   5.188  31.156  1.00 25.00           C
TER
END
