
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  162 (  162),  selected  142 , name T0385TS168_3
# Molecule2: number of CA atoms  142 ( 1050),  selected  142 , name T0385.pdb
# PARAMETERS: T0385TS168_3.T0385.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    60        17 - 76          4.92    20.65
  LCS_AVERAGE:     32.34

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        95 - 122         1.98    27.62
  LCS_AVERAGE:     14.26

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        50 - 75          0.94    20.15
  LONGEST_CONTINUOUS_SEGMENT:    26        96 - 121         0.76    27.36
  LCS_AVERAGE:     11.85

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     S      17     S      17      3    3   60     3    3    7    9   12   14   17   27   33   38   49   49   52   54   56   57   59   61   64   65 
LCS_GDT     E      18     E      18      3    4   60     3    3    3    8   10   15   19   27   33   35   39   42   47   53   54   56   59   61   64   65 
LCS_GDT     G      19     G      19      3    4   60     3    3    3    3    4    5   10   17   21   38   42   45   47   54   56   57   59   61   64   65 
LCS_GDT     S      20     S      20      3   22   60     3    3    4   13   19   32   38   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      21     A      21     19   22   60    18   18   18   18   19   21   33   39   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     D      22     D      22     19   22   60    18   18   18   25   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     N      23     N      23     19   22   60    18   18   23   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      24     A      24     19   22   60    18   18   18   18   19   21   38   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      25     A      25     19   22   60    18   18   18   18   31   37   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     L      26     L      26     19   22   60    18   18   24   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     C      27     C      27     19   22   60    18   18   18   18   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     D      28     D      28     19   22   60    18   18   18   25   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      29     A      29     19   22   60    18   18   18   28   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     L      30     L      30     19   22   60    18   24   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      31     A      31     19   22   60    18   18   18   18   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     V      32     V      32     19   22   60    18   18   24   28   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     E      33     E      33     19   22   60    18   18   22   28   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     H      34     H      34     19   22   60    18   18   18   18   31   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      35     A      35     19   22   60    18   18   18   28   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     T      36     T      36     19   22   60    18   18   24   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     I      37     I      37     19   22   60    18   18   25   28   30   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     Y      38     Y      38     19   22   60    18   18   18   18   31   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     G      39     G      39     19   22   60     3    3    6   12   22   32   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     Y      40     Y      40      4   22   60     3   11   25   28   31   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     G      41     G      41      4   22   60     3    3    6   11   19   29   32   35   38   44   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     I      42     I      42      4    6   60     3    3    4    6    8   10   14   16   21   23   29   38   45   48   53   56   60   61   64   65 
LCS_GDT     V      43     V      43      3    6   60     3    3    5    9   12   16   21   31   36   41   45   53   55   55   57   57   60   61   64   65 
LCS_GDT     S      44     S      44      3    6   60     3    3    3    5    6    8   14   20   26   33   36   41   44   45   53   55   58   61   64   65 
LCS_GDT     A      45     A      45      5    7   60     3    4    5    9   11   14   20   31   34   36   37   38   42   47   51   54   60   61   64   65 
LCS_GDT     L      46     L      46      5    7   60     3    4    6    7   11   19   25   31   37   44   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     S      47     S      47      5    7   60     3    4    6   11   18   29   33   38   44   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     P      48     P      48      5    7   60     3    4    6   10   12   19   22   31   37   44   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     P      49     P      49      5   27   60     3    4    6   10   11   16   24   34   39   46   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     G      50     G      50     26   27   60     3    4    7   21   30   34   41   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     V      51     V      51     26   27   60    12   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     N      52     N      52     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     F      53     F      53     26   27   60    12   25   26   29   34   37   41   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     L      54     L      54     26   27   60    12   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     V      55     V      55     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      56     A      56     26   27   60    16   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     D      57     D      57     26   27   60    13   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      58     A      58     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     L      59     L      59     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     K      60     K      60     26   27   60    16   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     Q      61     Q      61     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     H      62     H      62     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     R      63     R      63     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     H      64     H      64     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     R      65     R      65     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     R      66     R      66     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     D      67     D      67     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     D      68     D      68     26   27   60    16   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     V      69     V      69     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     I      70     I      70     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     V      71     V      71     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     M      72     M      72     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     L      73     L      73     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     S      74     S      74     26   27   60    15   25   26   29   34   38   42   45   46   48   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     A      75     A      75     26   27   60    17   25   26   29   34   38   42   45   46   48   51   54   55   55   56   57   59   61   64   65 
LCS_GDT     R      76     R      76      3   27   60     1    3    6   18   24   25   32   35   39   42   49   50   52   54   56   56   58   61   64   65 
LCS_GDT     G      77     G      77      4    5   58     0    4    4    5    6    9   12   21   23   27   31   36   39   47   52   55   56   59   61   62 
LCS_GDT     V      78     V      78      4    5   43     3    4    4    5    8   11   15   19   23   25   30   36   39   40   43   45   47   53   59   61 
LCS_GDT     T      79     T      79      4    5   43     3    4    6    6    7   11   13   17   21   25   30   36   39   40   43   45   47   52   56   58 
LCS_GDT     A      80     A      80      4    5   43     3    4    4    5    8   12   15   19   22   25   30   36   39   40   43   43   46   48   49   55 
LCS_GDT     P      81     P      81      3    4   43     1    3    4    5    7   11   15   21   26   29   32   36   39   40   43   44   46   48   49   52 
LCS_GDT     I      82     I      82      4    6   43     0    4    5    5    7    9   12   20   26   29   32   36   39   40   43   44   46   47   48   50 
LCS_GDT     A      83     A      83      4    6   43     0    4    5    5    6    7   12   19   25   29   32   36   39   40   43   44   46   47   48   52 
LCS_GDT     A      84     A      84      4    6   43     3    4    5    5    6    7    9   15   16   25   32   35   39   40   43   44   46   47   51   56 
LCS_GDT     A      85     A      85      4    6   39     3    4    4    5    6    7   10   15   16   20   25   28   30   33   34   40   42   49   52   58 
LCS_GDT     G      86     G      86      3    6   18     3    3    5    6    9   10   11   14   17   21   25   28   30   33   34   39   44   49   54   59 
LCS_GDT     Y      87     Y      87      3    6   18     0    2    5    6    9   10   11   17   20   21   25   28   31   36   41   41   45   49   56   61 
LCS_GDT     Q      88     Q      88      3    6   37     0    2    4    4    9   10   19   21   25   26   30   31   32   33   36   40   45   49   56   61 
LCS_GDT     L      89     L      89      3    8   37     1    2    4    6   14   19   23   26   28   29   30   31   32   34   36   40   45   49   56   61 
LCS_GDT     P      90     P      90      4    8   37     3    6   19   24   27   27   28   28   29   30   31   31   32   36   42   45   51   55   59   63 
LCS_GDT     M      91     M      91      4    8   37     3    3   10   20   25   26   28   28   29   30   31   31   31   34   42   44   51   55   59   65 
LCS_GDT     Q      92     Q      92      4    8   37     3    3    4    5    8   11   22   28   29   30   31   31   31   34   37   44   49   49   53   60 
LCS_GDT     V      93     V      93      4    8   37     4    4    4    6    8   10   17   27   29   30   31   31   31   32   35   37   39   41   46   48 
LCS_GDT     S      94     S      94      4    8   37     4    4    5    6    9   10   11   12   14   17   18   26   30   32   32   34   36   38   41   46 
LCS_GDT     S      95     S      95      4   28   37     4    4    5    6    9   16   26   28   29   30   31   31   32   33   34   36   36   40   45   53 
LCS_GDT     A      96     A      96     26   28   37     4    7   25   26   27   27   28   28   29   30   31   31   32   34   36   39   43   49   54   59 
LCS_GDT     A      97     A      97     26   28   37     4    4   11   26   27   27   28   28   29   30   31   31   32   34   36   40   44   48   54   59 
LCS_GDT     D      98     D      98     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     A      99     A      99     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   54   61 
LCS_GDT     A     100     A     100     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   54   59 
LCS_GDT     R     101     R     101     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     L     102     L     102     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   35   42   46   48   53   59   64   65 
LCS_GDT     A     103     A     103     26   28   37    17   23   25   26   27   27   28   28   29   30   32   37   42   48   53   56   60   61   64   65 
LCS_GDT     V     104     V     104     26   28   37    17   23   25   26   27   27   28   28   29   36   42   44   50   53   57   57   60   61   64   65 
LCS_GDT     R     105     R     105     26   28   37    17   23   25   26   27   27   28   28   31   36   40   44   49   52   57   57   60   61   64   65 
LCS_GDT     M     106     M     106     26   28   37    17   23   25   26   27   29   32   35   38   41   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     E     107     E     107     26   28   37    17   23   25   26   27   27   32   35   38   42   51   54   55   55   57   57   60   61   64   65 
LCS_GDT     N     108     N     108     26   28   37    17   23   25   26   27   29   32   35   37   41   42   45   48   55   57   57   60   61   64   65 
LCS_GDT     D     109     D     109     26   28   37    17   23   25   26   27   27   28   28   29   30   31   37   40   41   44   47   51   55   59   62 
LCS_GDT     G     110     G     110     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   40   44   51   53   56   61 
LCS_GDT     A     111     A     111     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   34   37   41   45   51   53   56   61 
LCS_GDT     T     112     T     112     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     A     113     A     113     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     W     114     W     114     26   28   37    17   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     R     115     R     115     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     A     116     A     116     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     V     117     V     117     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     V     118     V     118     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     E     119     E     119     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   39   43   46   50   54 
LCS_GDT     H     120     H     120     26   28   37    16   23   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   54   61 
LCS_GDT     A     121     A     121     26   28   37     4   18   25   26   27   27   28   28   29   30   31   31   32   34   36   40   45   49   56   61 
LCS_GDT     E     122     E     122      3   28   37     3    3    3    5    6    9   24   26   28   29   30   31   32   35   36   40   45   49   56   61 
LCS_GDT     T     123     T     123      3   24   37     0    2    3    7    9   18   21   24   25   28   29   32   33   35   36   40   45   49   56   61 
LCS_GDT     A     124     A     124      3   24   37     3    3    3   10   14   20   23   25   27   30   31   32   34   36   36   40   46   49   56   61 
LCS_GDT     D     125     D     125     22   24   37    21   21   22   22   22   22   23   25   27   30   31   32   34   37   38   41   46   48   51   56 
LCS_GDT     D     126     D     126     22   24   34    21   21   22   22   22   22   23   25   27   30   31   32   34   36   38   41   46   49   56   61 
LCS_GDT     R     127     R     127     22   24   34    21   21   22   22   22   22   23   25   27   30   31   32   34   37   40   42   46   48   53   61 
LCS_GDT     V     128     V     128     22   24   34    21   21   22   22   22   22   23   25   27   30   31   32   34   37   40   43   47   52   56   61 
LCS_GDT     F     129     F     129     22   24   34    21   21   22   22   22   22   23   25   27   30   31   32   34   37   40   42   46   49   56   61 
LCS_GDT     A     130     A     130     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   37   40   42   46   52   56   61 
LCS_GDT     S     131     S     131     22   24   33    21   21   22   22   22   22   23   25   27   30   31   36   46   48   52   54   55   57   61   62 
LCS_GDT     T     132     T     132     22   24   33    21   21   22   22   22   22   23   25   27   30   31   36   37   40   41   45   53   57   61   62 
LCS_GDT     A     133     A     133     22   24   33    21   21   22   22   22   22   23   25   27   30   31   36   37   40   52   54   55   57   61   62 
LCS_GDT     L     134     L     134     22   24   33    21   21   22   22   22   26   32   35   44   47   49   50   52   54   54   56   57   59   61   62 
LCS_GDT     T     135     T     135     22   24   33    21   21   22   22   22   22   23   25   36   40   41   44   52   54   54   56   57   59   61   62 
LCS_GDT     E     136     E     136     22   24   33    21   21   22   22   22   22   23   25   27   36   39   44   47   49   53   55   56   58   61   62 
LCS_GDT     S     137     S     137     22   24   33    21   21   22   22   22   23   27   42   46   48   49   50   52   54   54   56   57   59   61   62 
LCS_GDT     A     138     A     138     22   24   33    21   21   22   22   22   22   23   25   36   40   41   44   52   54   54   56   57   59   61   62 
LCS_GDT     V     139     V     139     22   24   33    21   21   22   22   22   22   23   25   27   30   37   42   46   49   53   55   56   58   61   62 
LCS_GDT     M     140     M     140     22   24   33    21   21   22   22   22   22   23   25   27   30   31   42   46   49   53   55   56   58   61   62 
LCS_GDT     A     141     A     141     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   37   42   53   56   58   60   62 
LCS_GDT     T     142     T     142     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   36   36   39   46   49   56   61 
LCS_GDT     R     143     R     143     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   36   38   41   46   49   56   61 
LCS_GDT     W     144     W     144     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   37   38   42   46   49   56   61 
LCS_GDT     N     145     N     145     22   24   33    21   21   22   22   22   22   23   25   27   30   31   32   34   36   36   39   43   48   56   61 
LCS_GDT     R     146     R     146     22   24   33     0    5   22   22   22   22   23   25   27   30   31   32   34   36   36   39   43   49   56   61 
LCS_GDT     V     147     V     147      3   24   33     3    3    5    7   11   16   21   25   27   30   31   32   34   36   36   39   44   49   56   61 
LCS_GDT     L     148     L     148      3    5   33     3    3    3    4    6   11   14   14   16   23   27   30   34   36   36   39   44   49   56   61 
LCS_GDT     G     149     G     149      3    5   33     3    3    5    7    8   14   18   23   27   30   31   32   34   36   36   39   44   49   56   61 
LCS_GDT     A     150     A     150      5    8   33     3    5    6    7    8   13   17   22   27   30   31   32   34   36   36   39   43   49   54   60 
LCS_GDT     W     151     W     151      5    8   33     3    5    6    7    8   13   17   22   27   30   31   32   34   36   36   39   43   48   52   57 
LCS_GDT     P     152     P     152      5    8   33     3    5    6    8   11   16   17   22   27   30   31   32   34   36   36   37   41   44   50   55 
LCS_GDT     I     153     I     153      5    8   33     3    5    6    6    8    9   11   16   19   23   25   29   31   34   35   41   46   48   49   49 
LCS_GDT     T     154     T     154      5    8   33     3    5    5    6    8    9   11   16   19   23   25   28   31   34   38   41   46   48   49   49 
LCS_GDT     A     155     A     155      5    8   30     3    5    6    6    8    9    9   12   15   19   20   26   30   37   38   41   46   48   49   50 
LCS_GDT     A     156     A     156      5    8   30     3    5    6    6    8    9   11   12   16   19   22   28   31   37   39   42   46   48   49   51 
LCS_GDT     F     157     F     157      5    8   30     3    5    6    6    8   11   13   16   21   23   26   29   34   37   40   42   45   48   51   54 
LCS_GDT     P     158     P     158      5    7   30     3    5    5    6    8   11   15   19   23   25   26   29   34   36   40   42   45   47   51   54 
LCS_AVERAGE  LCS_A:  19.48  (  11.85   14.26   32.34 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     26     29     34     38     42     45     46     48     51     54     55     55     57     57     60     61     64     65 
GDT PERCENT_CA  14.79  17.61  18.31  20.42  23.94  26.76  29.58  31.69  32.39  33.80  35.92  38.03  38.73  38.73  40.14  40.14  42.25  42.96  45.07  45.77
GDT RMS_LOCAL    0.25   0.58   0.62   0.96   1.30   1.73   2.01   2.16   2.25   2.48   3.26   3.74   3.87   3.87   4.40   4.18   4.81   4.80   5.29   5.39
GDT RMS_ALL_CA  20.73  20.05  20.06  19.93  19.78  19.81  19.79  19.83  19.85  19.77  20.28  20.70  20.80  20.80  21.51  20.77  21.79  21.36  21.54  21.70

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17          9.817
LGA    E      18      E      18         12.150
LGA    G      19      G      19          9.279
LGA    S      20      S      20          4.281
LGA    A      21      A      21          4.862
LGA    D      22      D      22          2.431
LGA    N      23      N      23          1.681
LGA    A      24      A      24          3.848
LGA    A      25      A      25          3.445
LGA    L      26      L      26          1.401
LGA    C      27      C      27          2.201
LGA    D      28      D      28          2.959
LGA    A      29      A      29          2.189
LGA    L      30      L      30          2.037
LGA    A      31      A      31          2.539
LGA    V      32      V      32          2.212
LGA    E      33      E      33          2.610
LGA    H      34      H      34          2.828
LGA    A      35      A      35          1.841
LGA    T      36      T      36          2.281
LGA    I      37      I      37          3.108
LGA    Y      38      Y      38          2.331
LGA    G      39      G      39          3.418
LGA    Y      40      Y      40          2.737
LGA    G      41      G      41          8.781
LGA    I      42      I      42         12.266
LGA    V      43      V      43         10.536
LGA    S      44      S      44         14.145
LGA    A      45      A      45         15.690
LGA    L      46      L      46         10.599
LGA    S      47      S      47          7.567
LGA    P      48      P      48          9.426
LGA    P      49      P      49          7.773
LGA    G      50      G      50          3.859
LGA    V      51      V      51          2.413
LGA    N      52      N      52          3.053
LGA    F      53      F      53          3.970
LGA    L      54      L      54          2.768
LGA    V      55      V      55          1.829
LGA    A      56      A      56          2.820
LGA    D      57      D      57          2.806
LGA    A      58      A      58          1.804
LGA    L      59      L      59          1.713
LGA    K      60      K      60          2.092
LGA    Q      61      Q      61          1.678
LGA    H      62      H      62          1.397
LGA    R      63      R      63          1.106
LGA    H      64      H      64          1.138
LGA    R      65      R      65          1.475
LGA    R      66      R      66          1.016
LGA    D      67      D      67          0.977
LGA    D      68      D      68          1.462
LGA    V      69      V      69          1.459
LGA    I      70      I      70          1.247
LGA    V      71      V      71          1.468
LGA    M      72      M      72          1.471
LGA    L      73      L      73          1.169
LGA    S      74      S      74          1.266
LGA    A      75      A      75          1.611
LGA    R      76      R      76          6.730
LGA    G      77      G      77         13.727
LGA    V      78      V      78         16.429
LGA    T      79      T      79         20.780
LGA    A      80      A      80         21.345
LGA    P      81      P      81         20.996
LGA    I      82      I      82         24.031
LGA    A      83      A      83         25.632
LGA    A      84      A      84         25.415
LGA    A      85      A      85         29.185
LGA    G      86      G      86         27.535
LGA    Y      87      Y      87         26.420
LGA    Q      88      Q      88         24.663
LGA    L      89      L      89         19.047
LGA    P      90      P      90         15.333
LGA    M      91      M      91         15.745
LGA    Q      92      Q      92         20.157
LGA    V      93      V      93         23.760
LGA    S      94      S      94         30.967
LGA    S      95      S      95         32.232
LGA    A      96      A      96         31.674
LGA    A      97      A      97         32.427
LGA    D      98      D      98         26.731
LGA    A      99      A      99         21.855
LGA    A     100      A     100         21.745
LGA    R     101      R     101         21.444
LGA    L     102      L     102         16.340
LGA    A     103      A     103         13.257
LGA    V     104      V     104         14.525
LGA    R     105      R     105         15.267
LGA    M     106      M     106         10.713
LGA    E     107      E     107          9.902
LGA    N     108      N     108         14.131
LGA    D     109      D     109         15.996
LGA    G     110      G     110         14.614
LGA    A     111      A     111         15.682
LGA    T     112      T     112         21.449
LGA    A     113      A     113         23.185
LGA    W     114      W     114         22.878
LGA    R     115      R     115         25.379
LGA    A     116      A     116         30.749
LGA    V     117      V     117         31.907
LGA    V     118      V     118         31.653
LGA    E     119      E     119         36.499
LGA    H     120      H     120         40.978
LGA    A     121      A     121         41.168
LGA    E     122      E     122         41.561
LGA    T     123      T     123         37.334
LGA    A     124      A     124         31.967
LGA    D     125      D     125         29.663
LGA    D     126      D     126         26.046
LGA    R     127      R     127         20.742
LGA    V     128      V     128         21.467
LGA    F     129      F     129         21.380
LGA    A     130      A     130         15.794
LGA    S     131      S     131         13.194
LGA    T     132      T     132         16.388
LGA    A     133      A     133         12.422
LGA    L     134      L     134          7.457
LGA    T     135      T     135         11.447
LGA    E     136      E     136         13.131
LGA    S     137      S     137          7.580
LGA    A     138      A     138         10.221
LGA    V     139      V     139         15.940
LGA    M     140      M     140         14.080
LGA    A     141      A     141         14.067
LGA    T     142      T     142         19.655
LGA    R     143      R     143         21.971
LGA    W     144      W     144         20.555
LGA    N     145      N     145         24.149
LGA    R     146      R     146         30.043
LGA    V     147      V     147         30.045
LGA    L     148      L     148         29.170
LGA    G     149      G     149         34.383
LGA    A     150      A     150         39.916
LGA    W     151      W     151         40.393
LGA    P     152      P     152         40.751
LGA    I     153      I     153         38.915
LGA    T     154      T     154         41.420
LGA    A     155      A     155         39.063
LGA    A     156      A     156         38.674
LGA    F     157      F     157         37.424
LGA    P     158      P     158         34.682

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  162  142    4.0     45    2.16    27.465    25.048     1.989

LGA_LOCAL      RMSD =  2.163  Number of atoms =   45  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.984  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 16.449  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.840146 * X  +  -0.016407 * Y  +  -0.542112 * Z  +  24.433798
  Y_new =   0.533298 * X  +  -0.156962 * Y  +   0.831238 * Z  +  13.932912
  Z_new =  -0.098728 * X  +  -0.987468 * Y  +  -0.123121 * Z  +  25.098032 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.694840    1.446753  [ DEG:   -97.1072     82.8928 ]
  Theta =   0.098889    3.042703  [ DEG:     5.6659    174.3340 ]
  Phi   =   0.565593   -2.576000  [ DEG:    32.4061   -147.5939 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS168_3                                  
REMARK     2: T0385.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS168_3.T0385.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  162  142   4.0   45   2.16  25.048    16.45
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS168_3
PFRMAT TS
TARGET T0385
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      18.014 -15.734  25.933  1.00 25.00           C
ATOM      2  CA  THR     2      18.745 -12.020  25.885  1.00 25.00           C
ATOM      3  CA  SER     3      22.318 -13.176  25.400  1.00 25.00           C
ATOM      4  CA  SER     4      23.074 -13.997  29.006  1.00 25.00           C
ATOM      5  CA  GLU     5      24.886 -11.224  30.948  1.00 25.00           C
ATOM      6  CA  PRO     6      27.794 -10.087  33.216  1.00 25.00           C
ATOM      7  CA  ALA     7      25.250  -8.281  35.460  1.00 25.00           C
ATOM      8  CA  HIS     8      25.697  -6.699  38.923  1.00 25.00           C
ATOM      9  CA  GLY     9      22.704  -8.463  40.419  1.00 25.00           C
ATOM     10  CA  ALA    10      22.734  -5.736  43.079  1.00 25.00           C
ATOM     11  CA  THR    11      18.919  -5.402  43.046  1.00 25.00           C
ATOM     12  CA  PRO    12      15.694  -6.159  44.903  1.00 25.00           C
ATOM     13  CA  LYS    13      14.198  -2.681  44.265  1.00 25.00           C
ATOM     14  CA  ARG    14      14.295  -0.905  47.643  1.00 25.00           C
ATOM     15  CA  SER    15      15.849   2.263  46.229  1.00 25.00           C
ATOM     16  CA  PRO    16      13.926   4.029  48.932  1.00 25.00           C
ATOM     17  CA  SER    17      16.349   6.887  49.315  1.00 25.00           C
ATOM     18  CA  GLU    18      20.054   6.704  50.168  1.00 25.00           C
ATOM     19  CA  GLY    19      20.305  10.497  50.022  1.00 25.00           C
ATOM     20  CA  SER    20      23.038   9.750  47.557  1.00 25.00           C
ATOM     21  CA  ALA    21      24.685  11.631  44.635  1.00 25.00           C
ATOM     22  CA  ASP    22      24.529  14.843  42.554  1.00 25.00           C
ATOM     23  CA  ASN    23      28.003  14.110  41.118  1.00 25.00           C
ATOM     24  CA  ALA    24      26.911  10.549  40.229  1.00 25.00           C
ATOM     25  CA  ALA    25      23.775  11.914  38.506  1.00 25.00           C
ATOM     26  CA  LEU    26      25.915  14.397  36.525  1.00 25.00           C
ATOM     27  CA  CYS    27      28.266  11.565  35.468  1.00 25.00           C
ATOM     28  CA  ASP    28      25.269   9.460  34.347  1.00 25.00           C
ATOM     29  CA  ALA    29      23.917  12.419  32.326  1.00 25.00           C
ATOM     30  CA  LEU    30      27.342  12.891  30.680  1.00 25.00           C
ATOM     31  CA  ALA    31      27.463   9.164  29.805  1.00 25.00           C
ATOM     32  CA  VAL    32      23.954   9.382  28.286  1.00 25.00           C
ATOM     33  CA  GLU    33      25.011  12.429  26.220  1.00 25.00           C
ATOM     34  CA  HIS    34      28.112  10.548  24.988  1.00 25.00           C
ATOM     35  CA  ALA    35      25.936   7.551  24.014  1.00 25.00           C
ATOM     36  CA  THR    36      23.550   9.868  22.115  1.00 25.00           C
ATOM     37  CA  ILE    37      26.512  11.456  20.280  1.00 25.00           C
ATOM     38  CA  TYR    38      27.829   7.983  19.347  1.00 25.00           C
ATOM     39  CA  GLY    39      27.123   9.254  15.804  1.00 25.00           C
ATOM     40  CA  TYR    40      25.478  11.970  13.631  1.00 25.00           C
ATOM     41  CA  GLY    41      25.080  14.420  16.477  1.00 25.00           C
ATOM     42  CA  ILE    42      27.902  16.554  18.019  1.00 25.00           C
ATOM     43  CA  VAL    43      26.950  19.300  15.515  1.00 25.00           C
ATOM     44  CA  SER    44      25.822  22.588  14.115  1.00 25.00           C
ATOM     45  CA  ALA    45      23.104  20.621  12.232  1.00 25.00           C
ATOM     46  CA  LEU    46      24.181  17.387  10.545  1.00 25.00           C
ATOM     47  CA  SER    47      26.416  18.433   7.649  1.00 25.00           C
ATOM     48  CA  PRO    48      29.504  20.409   6.881  1.00 25.00           C
ATOM     49  CA  PRO    49      31.951  20.069   4.011  1.00 25.00           C
ATOM     50  CA  GLY    50      32.694  16.482   2.891  1.00 25.00           C
ATOM     51  CA  VAL    51      29.499  15.355   4.676  1.00 25.00           C
ATOM     52  CA  ASN    52      31.241  12.141   5.817  1.00 25.00           C
ATOM     53  CA  PHE    53      34.202  14.183   7.131  1.00 25.00           C
ATOM     54  CA  LEU    54      31.803  16.487   9.029  1.00 25.00           C
ATOM     55  CA  VAL    55      30.046  13.444  10.551  1.00 25.00           C
ATOM     56  CA  ALA    56      33.427  11.996  11.621  1.00 25.00           C
ATOM     57  CA  ASP    57      34.380  15.341  13.222  1.00 25.00           C
ATOM     58  CA  ALA    58      31.040  15.426  15.093  1.00 25.00           C
ATOM     59  CA  LEU    59      31.616  11.851  16.337  1.00 25.00           C
ATOM     60  CA  LYS    60      35.128  12.806  17.530  1.00 25.00           C
ATOM     61  CA  GLN    61      33.703  15.849  19.367  1.00 25.00           C
ATOM     62  CA  HIS    62      31.058  13.636  21.031  1.00 25.00           C
ATOM     63  CA  ARG    63      33.773  11.160  22.112  1.00 25.00           C
ATOM     64  CA  HIS    64      35.846  14.033  23.568  1.00 25.00           C
ATOM     65  CA  ARG    65      32.782  15.309  25.478  1.00 25.00           C
ATOM     66  CA  ARG    66      32.144  11.793  26.853  1.00 25.00           C
ATOM     67  CA  ASP    67      35.802  11.537  27.962  1.00 25.00           C
ATOM     68  CA  ASP    68      35.540  14.941  29.696  1.00 25.00           C
ATOM     69  CA  VAL    69      32.345  13.814  31.481  1.00 25.00           C
ATOM     70  CA  ILE    70      34.087  10.600  32.622  1.00 25.00           C
ATOM     71  CA  VAL    71      37.048  12.643  33.936  1.00 25.00           C
ATOM     72  CA  MET    72      34.649  14.947  35.835  1.00 25.00           C
ATOM     73  CA  LEU    73      32.892  11.903  37.357  1.00 25.00           C
ATOM     74  CA  SER    74      36.273  10.455  38.426  1.00 25.00           C
ATOM     75  CA  ALA    75      37.226  13.801  40.028  1.00 25.00           C
ATOM     76  CA  ARG    76      37.690  17.552  39.467  1.00 25.00           C
ATOM     77  CA  GLY    77      37.911  20.898  37.554  1.00 25.00           C
ATOM     78  CA  VAL    78      37.650  21.419  33.786  1.00 25.00           C
ATOM     79  CA  THR    79      36.957  25.019  34.807  1.00 25.00           C
ATOM     80  CA  ALA    80      35.504  26.807  31.807  1.00 25.00           C
ATOM     81  CA  PRO    81      32.778  24.121  31.659  1.00 25.00           C
ATOM     82  CA  ILE    82      30.274  26.698  30.337  1.00 25.00           C
ATOM     83  CA  ALA    83      32.785  27.804  27.665  1.00 25.00           C
ATOM     84  CA  ALA    84      33.333  24.156  26.636  1.00 25.00           C
ATOM     85  CA  ALA    85      36.910  25.270  25.895  1.00 25.00           C
ATOM     86  CA  GLY    86      38.918  22.134  25.193  1.00 25.00           C
ATOM     87  CA  TYR    87      38.006  22.655  21.521  1.00 25.00           C
ATOM     88  CA  GLN    88      35.316  20.000  22.262  1.00 25.00           C
ATOM     89  CA  LEU    89      31.749  18.580  22.230  1.00 25.00           C
ATOM     90  CA  PRO    90      28.342  16.886  22.486  1.00 25.00           C
ATOM     91  CA  MET    91      24.792  17.041  23.951  1.00 25.00           C
ATOM     92  CA  GLN    92      22.436  19.078  26.134  1.00 25.00           C
ATOM     93  CA  VAL    93      20.685  21.978  27.880  1.00 25.00           C
ATOM     94  CA  SER    94      21.310  24.340  30.758  1.00 25.00           C
ATOM     95  CA  SER    95      22.196  21.792  33.383  1.00 25.00           C
ATOM     96  CA  ALA    96      24.253  18.853  34.605  1.00 25.00           C
ATOM     97  CA  ALA    97      27.750  20.367  34.228  1.00 25.00           C
ATOM     98  CA  ASP    98      28.555  17.874  31.433  1.00 25.00           C
ATOM     99  CA  ALA    99      25.283  18.772  29.658  1.00 25.00           C
ATOM    100  CA  ALA   100      26.119  22.498  29.947  1.00 25.00           C
ATOM    101  CA  ARG   101      29.606  21.852  28.500  1.00 25.00           C
ATOM    102  CA  LEU   102      28.063  19.897  25.591  1.00 25.00           C
ATOM    103  CA  ALA   103      25.617  22.768  24.925  1.00 25.00           C
ATOM    104  CA  VAL   104      28.514  25.273  24.942  1.00 25.00           C
ATOM    105  CA  ARG   105      30.458  23.078  22.479  1.00 25.00           C
ATOM    106  CA  MET   106      27.391  22.882  20.194  1.00 25.00           C
ATOM    107  CA  GLU   107      27.017  26.690  20.328  1.00 25.00           C
ATOM    108  CA  ASN   108      30.720  27.110  19.444  1.00 25.00           C
ATOM    109  CA  ASP   109      30.313  24.701  16.494  1.00 25.00           C
ATOM    110  CA  GLY   110      27.257  26.664  15.280  1.00 25.00           C
ATOM    111  CA  ALA   111      29.229  29.937  15.528  1.00 25.00           C
ATOM    112  CA  THR   112      32.106  28.384  13.533  1.00 25.00           C
ATOM    113  CA  ALA   113      29.638  27.196  10.855  1.00 25.00           C
ATOM    114  CA  TRP   114      28.124  30.709  10.658  1.00 25.00           C
ATOM    115  CA  ARG   115      31.622  32.222  10.282  1.00 25.00           C
ATOM    116  CA  ALA   116      32.427  29.731   7.487  1.00 25.00           C
ATOM    117  CA  VAL   117      29.155  30.629   5.711  1.00 25.00           C
ATOM    118  CA  VAL   118      29.992  34.354   6.000  1.00 25.00           C
ATOM    119  CA  GLU   119      33.478  33.708   4.552  1.00 25.00           C
ATOM    120  CA  HIS   120      31.935  31.753   1.644  1.00 25.00           C
ATOM    121  CA  ALA   121      29.489  34.624   0.978  1.00 25.00           C
ATOM    122  CA  GLU   122      26.594  34.004   3.314  1.00 25.00           C
ATOM    123  CA  THR   123      24.662  33.188   6.534  1.00 25.00           C
ATOM    124  CA  ALA   124      22.719  32.471   9.766  1.00 25.00           C
ATOM    125  CA  ASP   125      20.435  31.916  12.756  1.00 25.00           C
ATOM    126  CA  ASP   126      23.610  30.005  13.723  1.00 25.00           C
ATOM    127  CA  ARG   127      22.671  30.271  17.427  1.00 25.00           C
ATOM    128  CA  VAL   128      19.154  28.966  16.655  1.00 25.00           C
ATOM    129  CA  PHE   129      20.646  26.030  14.701  1.00 25.00           C
ATOM    130  CA  ALA   130      22.977  25.231  17.633  1.00 25.00           C
ATOM    131  CA  SER   131      20.008  25.321  20.050  1.00 25.00           C
ATOM    132  CA  THR   132      18.041  22.965  17.759  1.00 25.00           C
ATOM    133  CA  ALA   133      21.025  20.569  17.619  1.00 25.00           C
ATOM    134  CA  LEU   134      21.288  20.634  21.439  1.00 25.00           C
ATOM    135  CA  THR   135      17.544  19.883  21.734  1.00 25.00           C
ATOM    136  CA  GLU   136      17.914  16.956  19.293  1.00 25.00           C
ATOM    137  CA  SER   137      20.862  15.599  21.327  1.00 25.00           C
ATOM    138  CA  ALA   138      18.800  15.874  24.543  1.00 25.00           C
ATOM    139  CA  VAL   139      15.901  14.012  22.873  1.00 25.00           C
ATOM    140  CA  MET   140      18.302  11.259  21.718  1.00 25.00           C
ATOM    141  CA  ALA   141      19.700  10.954  25.270  1.00 25.00           C
ATOM    142  CA  THR   142      16.146  10.688  26.672  1.00 25.00           C
ATOM    143  CA  ARG   143      15.314   7.962  24.114  1.00 25.00           C
ATOM    144  CA  TRP   144      18.489   6.051  25.081  1.00 25.00           C
ATOM    145  CA  ASN   145      17.551   6.317  28.785  1.00 25.00           C
ATOM    146  CA  ARG   146      14.157   5.025  30.009  1.00 25.00           C
ATOM    147  CA  VAL   147      11.269   7.379  30.804  1.00 25.00           C
ATOM    148  CA  LEU   148      10.930  10.276  33.202  1.00 25.00           C
ATOM    149  CA  GLY   149       8.386   7.964  34.944  1.00 25.00           C
ATOM    150  CA  ALA   150       5.801   5.198  35.254  1.00 25.00           C
ATOM    151  CA  TRP   151       7.760   2.010  35.958  1.00 25.00           C
ATOM    152  CA  PRO   152       7.064  -1.185  33.916  1.00 25.00           C
ATOM    153  CA  ILE   153       3.333  -1.899  33.617  1.00 25.00           C
ATOM    154  CA  THR   154       2.429  -4.743  35.948  1.00 25.00           C
ATOM    155  CA  ALA   155       0.763  -7.492  33.941  1.00 25.00           C
ATOM    156  CA  ALA   156       0.624 -10.957  32.408  1.00 25.00           C
ATOM    157  CA  PHE   157       2.434  -9.870  29.270  1.00 25.00           C
ATOM    158  CA  PRO   158      -0.167 -11.420  26.951  1.00 25.00           C
ATOM    159  CA  GLY   159      -0.598 -10.385  23.346  1.00 25.00           C
ATOM    160  CA  GLY   160      -1.249  -8.293  20.177  1.00 25.00           C
ATOM    161  CA  ASP   161      -1.190  -4.601  19.320  1.00 25.00           C
ATOM    162  CA  GLU   162      -2.324  -1.846  21.676  1.00 25.00           C
TER
END
