
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  162 (  162),  selected  142 , name T0385TS393_4
# Molecule2: number of CA atoms  142 ( 1050),  selected  142 , name T0385.pdb
# PARAMETERS: T0385TS393_4.T0385.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        36 - 86          4.99    22.55
  LONGEST_CONTINUOUS_SEGMENT:    51        37 - 87          4.92    22.75
  LCS_AVERAGE:     28.52

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        50 - 78          1.88    19.98
  LCS_AVERAGE:     14.64

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        50 - 76          0.97    19.75
  LCS_AVERAGE:     12.31

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     S      17     S      17      3    4   31     0    3    4    5    5   12   14   20   23   28   30   34   36   42   44   48   50   53   55   57 
LCS_GDT     E      18     E      18      3    4   31     3    3    4    9   10   12   16   20   23   28   30   34   37   42   45   48   50   53   55   57 
LCS_GDT     G      19     G      19      3    4   31     3    3    6    9   10   12   14   20   23   28   30   34   37   42   45   48   50   53   55   57 
LCS_GDT     S      20     S      20      3   21   31     3    5    8   12   18   22   23   24   25   27   30   34   36   42   45   48   50   53   55   57 
LCS_GDT     A      21     A      21     18   21   31    18   19   19   19   19   22   23   24   25   27   30   34   36   42   45   48   50   53   55   57 
LCS_GDT     D      22     D      22     18   21   31    18   19   19   19   19   22   23   24   25   27   30   34   36   42   45   48   50   53   55   57 
LCS_GDT     N      23     N      23     18   21   31    18   19   19   19   19   22   23   24   25   27   30   34   35   42   45   48   50   53   55   57 
LCS_GDT     A      24     A      24     18   21   31    18   19   19   19   19   22   23   24   25   27   30   34   36   42   45   48   50   53   55   57 
LCS_GDT     A      25     A      25     18   21   31    18   19   19   19   19   22   23   24   25   28   30   34   37   42   45   48   50   53   55   57 
LCS_GDT     L      26     L      26     18   21   31    18   19   19   19   19   22   23   24   25   28   30   34   37   42   45   48   50   53   55   58 
LCS_GDT     C      27     C      27     18   21   31    18   19   19   19   19   22   23   24   25   28   30   34   36   42   45   48   50   53   55   58 
LCS_GDT     D      28     D      28     18   21   31    18   19   19   19   19   22   23   24   25   28   30   34   41   44   47   48   53   55   58   62 
LCS_GDT     A      29     A      29     18   21   31    18   19   19   19   19   22   23   24   25   28   30   37   41   44   47   50   53   56   58   63 
LCS_GDT     L      30     L      30     18   21   31    18   19   19   19   19   22   30   32   34   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     A      31     A      31     18   21   31    18   20   28   28   29   29   31   32   34   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     V      32     V      32     18   21   31    18   19   19   19   25   27   31   32   34   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     E      33     E      33     18   21   31    18   19   19   23   28   29   31   32   34   36   39   40   43   46   49   52   56   58   64   66 
LCS_GDT     H      34     H      34     18   21   31    18   19   19   19   23   28   30   31   33   35   39   41   44   46   49   52   56   58   64   66 
LCS_GDT     A      35     A      35     18   21   50    18   19   19   19   19   22   23   29   31   33   37   40   43   46   49   52   56   58   64   66 
LCS_GDT     T      36     T      36     18   21   51    18   19   19   19   19   22   23   24   25   28   35   40   42   44   48   52   56   58   64   66 
LCS_GDT     I      37     I      37     18   21   51    18   19   19   19   19   22   23   24   27   34   38   41   44   46   50   52   56   58   64   66 
LCS_GDT     Y      38     Y      38     18   21   51    18   19   19   19   19   22   22   24   27   34   38   41   44   46   50   52   56   57   64   66 
LCS_GDT     G      39     G      39      3   21   51     3    3    4   11   23   25   27   27   29   32   38   41   44   46   49   52   56   58   64   66 
LCS_GDT     Y      40     Y      40      3   21   51     0    3    4    7    9   12   19   26   29   29   33   39   44   46   50   52   53   56   60   63 
LCS_GDT     G      41     G      41      3    4   51     3    3    6    9   15   22   23   24   28   39   42   43   44   46   50   52   53   56   59   61 
LCS_GDT     I      42     I      42      3    4   51     3    3    6    8    9   11   15   21   28   37   42   43   44   46   50   52   53   56   59   61 
LCS_GDT     V      43     V      43      3    4   51     3    3    6    8    9   11   16   23   28   39   42   43   44   46   50   52   53   56   59   61 
LCS_GDT     S      44     S      44      3    6   51     3    3    3    5    9   10   15   21   22   28   32   37   44   46   48   49   52   56   56   59 
LCS_GDT     A      45     A      45      3    6   51     3    3    4    4    9   10   15   21   29   37   42   43   44   46   48   52   53   56   57   60 
LCS_GDT     L      46     L      46      6    7   51     3    5    6    9   11   15   29   35   37   39   42   43   44   46   50   52   53   56   59   61 
LCS_GDT     S      47     S      47      6    7   51     3    5    6    9   10   17   30   35   37   39   42   43   44   46   50   52   53   57   62   65 
LCS_GDT     P      48     P      48      6    7   51     3    5    6    9   11   15   27   35   37   39   42   43   44   46   50   52   53   57   62   65 
LCS_GDT     P      49     P      49      6   28   51     3    5    6    9   10   15   23   35   37   39   42   43   44   46   50   52   53   57   62   65 
LCS_GDT     G      50     G      50     27   29   51     3    5    6   19   27   28   31   35   37   39   42   43   44   46   50   52   55   58   62   65 
LCS_GDT     V      51     V      51     27   29   51    12   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     N      52     N      52     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   55   58   64   66 
LCS_GDT     F      53     F      53     27   29   51    12   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   55   58   64   66 
LCS_GDT     L      54     L      54     27   29   51    12   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     V      55     V      55     27   29   51    13   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     A      56     A      56     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     D      57     D      57     27   29   51    13   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     A      58     A      58     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     L      59     L      59     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     K      60     K      60     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     Q      61     Q      61     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     H      62     H      62     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     R      63     R      63     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     H      64     H      64     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     R      65     R      65     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     R      66     R      66     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     D      67     D      67     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     D      68     D      68     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     V      69     V      69     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     I      70     I      70     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     V      71     V      71     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     M      72     M      72     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     L      73     L      73     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   65 
LCS_GDT     S      74     S      74     27   29   51     9   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     A      75     A      75     27   29   51    16   25   28   28   29   29   31   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     R      76     R      76     27   29   51    11   24   28   28   29   29   31   35   37   39   42   43   44   46   50   52   55   58   64   65 
LCS_GDT     G      77     G      77      4   29   51     4    4    4    5    6   10   15   28   34   36   39   41   44   46   49   52   56   58   64   66 
LCS_GDT     V      78     V      78      4   29   51     4    4    7   22   24   28   30   35   37   38   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     T      79     T      79      4    5   51     4    4    4    5   11   20   29   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     A      80     A      80      3    5   51     3    3    3    5    6   10   16   20   37   38   40   43   44   46   50   52   56   58   64   66 
LCS_GDT     P      81     P      81      3    5   51     3    3    4   10   18   26   30   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     I      82     I      82      3    6   51     0    3    5   10   21   26   30   35   37   39   42   43   44   46   50   52   56   58   64   66 
LCS_GDT     A      83     A      83      3    6   51     3    3    4    5    8   12   23   32   37   39   42   43   44   46   50   52   56   57   64   66 
LCS_GDT     A      84     A      84      4    6   51     3    4    6    8   11   15   22   31   37   39   42   43   44   46   50   52   56   57   64   66 
LCS_GDT     A      85     A      85      4    6   51     3    4    6    8   25   26   27   28   31   39   42   43   44   46   50   52   53   56   59   61 
LCS_GDT     G      86     G      86      4    6   51     3    4    5    5    8   26   27   28   28   29   33   38   44   46   50   51   52   56   59   61 
LCS_GDT     Y      87     Y      87      4    6   51     3    4    5    5    9   11   23   26   28   29   30   38   44   46   50   51   53   56   59   61 
LCS_GDT     Q      88     Q      88      4    5   49     3    3    4    5    8   11   12   13   16   27   31   32   36   39   43   47   50   53   55   57 
LCS_GDT     L      89     L      89      4    5   37     3    3    4    5    5    7    9   14   16   19   31   32   36   39   45   48   50   53   55   57 
LCS_GDT     P      90     P      90      4    7   37     3    3    4    5    7    8   18   26   28   30   31   33   37   42   45   48   50   53   55   57 
LCS_GDT     M      91     M      91      3    7   37     3    4    5    7    8    9   15   26   28   30   31   33   36   39   40   45   50   53   55   57 
LCS_GDT     Q      92     Q      92      5    7   37     3    4    5    7    8    9   10   12   15   23   25   31   35   37   40   41   42   44   45   49 
LCS_GDT     V      93     V      93      5    7   37     3    3    5    7    8    9   10   12   16   23   28   33   36   39   40   41   43   45   46   49 
LCS_GDT     S      94     S      94      5    7   37     3    4    5    7    8    9   10   12   16   23   28   32   36   39   40   41   43   45   46   49 
LCS_GDT     S      95     S      95      5   28   37     3    4    5    7   12   20   23   26   28   30   31   33   36   39   40   42   48   50   54   58 
LCS_GDT     A      96     A      96     26   28   37     4    7   25   26   26   26   27   28   29   31   35   40   42   42   47   50   52   56   60   65 
LCS_GDT     A      97     A      97     26   28   37     4    4   11   26   26   26   27   28   29   30   34   40   40   42   47   50   52   56   60   66 
LCS_GDT     D      98     D      98     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   44   47   50   55   58   64   66 
LCS_GDT     A      99     A      99     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   43   47   50   55   58   63   66 
LCS_GDT     A     100     A     100     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   52   58   63   66 
LCS_GDT     R     101     R     101     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   43   46   49   52   56   58   64   66 
LCS_GDT     L     102     L     102     26   28   37    17   23   25   26   26   26   27   28   30   31   36   40   43   46   49   52   56   58   64   66 
LCS_GDT     A     103     A     103     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   43   46   49   52   56   58   64   66 
LCS_GDT     V     104     V     104     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   42   49   52   56   58   64   66 
LCS_GDT     R     105     R     105     26   28   37    17   23   25   26   26   26   27   28   29   32   38   40   43   46   49   52   56   58   64   66 
LCS_GDT     M     106     M     106     26   28   37    17   23   25   26   26   26   30   30   34   35   38   41   44   46   50   52   56   58   64   66 
LCS_GDT     E     107     E     107     26   28   37    17   23   25   26   26   26   27   28   29   35   38   41   44   46   50   52   56   58   64   66 
LCS_GDT     N     108     N     108     26   28   37    17   23   25   26   26   26   27   28   29   31   38   40   43   46   48   50   56   57   64   66 
LCS_GDT     D     109     D     109     26   28   37    17   23   25   26   26   26   27   28   33   35   38   41   44   46   48   51   56   57   64   66 
LCS_GDT     G     110     G     110     26   28   37    17   23   25   26   26   26   29   31   34   38   39   41   44   46   50   52   56   58   64   66 
LCS_GDT     A     111     A     111     26   28   37    17   23   25   26   26   26   27   28   29   34   38   41   44   46   48   51   56   57   64   66 
LCS_GDT     T     112     T     112     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   45   48   50   56   57   64   66 
LCS_GDT     A     113     A     113     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   42   42   48   50   56   57   64   66 
LCS_GDT     W     114     W     114     26   28   37    17   23   25   26   26   26   27   28   29   31   35   40   43   46   48   51   56   57   64   66 
LCS_GDT     R     115     R     115     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   52   56   64   66 
LCS_GDT     A     116     A     116     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   51   56   58   64 
LCS_GDT     V     117     V     117     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   52   56   62   66 
LCS_GDT     V     118     V     118     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   52   56   64   66 
LCS_GDT     E     119     E     119     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   47   50   51   54   58   61 
LCS_GDT     H     120     H     120     26   28   37    16   23   25   26   26   26   27   28   29   31   35   40   42   42   44   49   51   53   58   60 
LCS_GDT     A     121     A     121     26   28   37     4   18   25   26   26   26   27   28   29   31   35   40   42   42   45   49   51   54   58   61 
LCS_GDT     E     122     E     122      4   28   37     3    3    6    6    8   14   23   27   29   31   35   40   42   42   47   50   52   56   60   65 
LCS_GDT     T     123     T     123     24   28   37     3    3    6   22   24   24   24   25   26   26   35   40   42   42   47   50   56   57   64   66 
LCS_GDT     A     124     A     124     24   25   37     3   21   22   23   24   24   24   25   26   26   26   27   32   36   43   49   56   58   64   66 
LCS_GDT     D     125     D     125     24   25   37    21   21   22   23   24   24   24   25   26   26   26   32   39   44   47   52   55   58   64   66 
LCS_GDT     D     126     D     126     24   25   37    21   21   22   23   24   24   24   25   26   26   26   32   34   36   39   46   51   56   64   66 
LCS_GDT     R     127     R     127     24   25   37    21   21   22   23   24   24   24   25   26   26   26   30   37   42   46   50   56   58   64   66 
LCS_GDT     V     128     V     128     24   25   37    21   21   22   23   24   24   29   31   32   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     F     129     F     129     24   25   37    21   21   22   23   24   24   24   25   26   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     A     130     A     130     24   25   37    21   21   22   23   24   24   24   25   26   35   36   39   43   46   49   52   56   58   64   66 
LCS_GDT     S     131     S     131     24   25   37    21   21   22   23   24   24   24   31   34   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     T     132     T     132     24   25   37    21   21   22   23   29   29   31   32   34   36   39   39   43   46   49   52   55   57   60   63 
LCS_GDT     A     133     A     133     24   25   37    21   21   22   23   24   24   24   25   26   33   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     L     134     L     134     24   25   33    21   24   28   28   29   29   31   32   34   36   39   39   43   46   49   52   55   58   63   65 
LCS_GDT     T     135     T     135     24   25   33    21   21   22   23   24   24   24   25   27   32   33   37   41   44   47   49   53   56   58   62 
LCS_GDT     E     136     E     136     24   25   33    21   21   22   23   24   24   24   25   26   26   26   29   35   36   39   43   52   54   58   62 
LCS_GDT     S     137     S     137     24   25   33    21   21   22   23   24   24   24   25   26   26   34   36   41   44   47   50   53   56   59   63 
LCS_GDT     A     138     A     138     24   25   33    21   21   22   23   24   24   24   25   26   26   26   32   36   44   47   48   52   56   58   62 
LCS_GDT     V     139     V     139     24   25   33    21   21   22   23   24   24   24   25   26   26   26   29   35   36   39   43   47   49   51   56 
LCS_GDT     M     140     M     140     24   25   33    21   21   22   23   24   24   24   25   26   26   26   30   34   35   39   43   47   49   51   56 
LCS_GDT     A     141     A     141     24   25   33    21   21   22   23   24   24   24   25   26   26   27   30   35   36   41   45   49   51   57   61 
LCS_GDT     T     142     T     142     24   25   33    21   21   22   23   24   24   24   25   26   26   27   30   34   35   39   43   47   49   51   54 
LCS_GDT     R     143     R     143     24   25   33    21   21   22   23   24   24   24   25   26   26   27   30   34   35   39   43   47   49   51   54 
LCS_GDT     W     144     W     144     24   25   33    21   21   22   23   24   24   24   25   26   26   27   30   33   35   39   43   47   49   51   54 
LCS_GDT     N     145     N     145     24   25   33    21   21   22   23   24   24   24   25   26   26   27   30   33   35   39   42   47   49   51   54 
LCS_GDT     R     146     R     146     24   25   33     0    3    9   23   24   24   24   25   26   26   27   30   34   35   39   42   47   49   51   53 
LCS_GDT     V     147     V     147      3   25   33     3    3    4   13   15   21   24   25   26   26   26   29   34   35   38   42   47   49   51   53 
LCS_GDT     L     148     L     148      3    8   33     3    3    4    6    9    9   13   17   20   24   26   29   34   35   38   40   43   45   51   53 
LCS_GDT     G     149     G     149      3    8   32     3    3    4    6    9    9   11   20   22   25   26   29   34   35   38   40   43   45   49   53 
LCS_GDT     A     150     A     150      3    8   32     3    3    5    6    9   10   11   14   17   24   26   29   34   35   38   40   43   48   51   53 
LCS_GDT     W     151     W     151      3    8   31     3    3    5    6    9   10   11   14   17   20   25   29   34   35   38   40   43   45   48   49 
LCS_GDT     P     152     P     152      4    8   31     3    3    4    6    9   10   11   14   17   21   25   29   34   35   38   40   43   45   48   49 
LCS_GDT     I     153     I     153      4    8   26     3    3    5    6    9   10   11   14   17   23   26   29   34   35   38   40   43   45   48   49 
LCS_GDT     T     154     T     154      4    8   26     3    4    5    6    9   10   11   14   17   23   26   29   34   35   38   40   43   45   48   49 
LCS_GDT     A     155     A     155      4    8   26     3    4    5    6    9   10   11   14   17   23   26   29   34   35   38   40   43   45   48   49 
LCS_GDT     A     156     A     156      4    5   26     3    4    4    5    7   10   11   14   17   21   25   29   34   35   38   40   43   45   48   49 
LCS_GDT     F     157     F     157      4    5   26     3    4    4    5    5    6   11   13   16   21   25   28   34   35   38   40   43   45   48   49 
LCS_GDT     P     158     P     158      3    4   26     3    3    4    5    6    8   11   13   17   23   26   29   34   35   38   40   43   45   48   49 
LCS_AVERAGE  LCS_A:  18.49  (  12.31   14.64   28.52 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     28     28     29     29     31     35     37     39     42     43     44     46     50     52     56     58     64     66 
GDT PERCENT_CA  14.79  17.61  19.72  19.72  20.42  20.42  21.83  24.65  26.06  27.46  29.58  30.28  30.99  32.39  35.21  36.62  39.44  40.85  45.07  46.48
GDT RMS_LOCAL    0.25   0.58   0.73   0.73   0.97   0.97   1.39   2.93   3.15   3.66   3.88   3.93   3.81   3.80   4.82   4.58   5.68   5.66   6.24   6.67
GDT RMS_ALL_CA  24.95  19.75  19.88  19.88  19.94  19.94  19.74  22.17  22.41  22.88  23.13  23.10  21.30  19.66  22.42  19.71  20.61  19.26  20.63  20.36

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17         36.601
LGA    E      18      E      18         33.474
LGA    G      19      G      19         32.386
LGA    S      20      S      20         31.491
LGA    A      21      A      21         31.551
LGA    D      22      D      22         25.949
LGA    N      23      N      23         25.741
LGA    A      24      A      24         27.154
LGA    A      25      A      25         23.700
LGA    L      26      L      26         19.114
LGA    C      27      C      27         20.301
LGA    D      28      D      28         20.669
LGA    A      29      A      29         15.949
LGA    L      30      L      30         13.227
LGA    A      31      A      31         15.381
LGA    V      32      V      32         14.762
LGA    E      33      E      33          9.293
LGA    H      34      H      34          8.484
LGA    A      35      A      35         11.819
LGA    T      36      T      36         11.238
LGA    I      37      I      37          7.082
LGA    Y      38      Y      38          7.987
LGA    G      39      G      39          8.787
LGA    Y      40      Y      40          8.724
LGA    G      41      G      41          7.788
LGA    I      42      I      42          9.148
LGA    V      43      V      43          8.026
LGA    S      44      S      44         10.541
LGA    A      45      A      45          8.593
LGA    L      46      L      46          3.934
LGA    S      47      S      47          3.626
LGA    P      48      P      48          3.800
LGA    P      49      P      49          3.971
LGA    G      50      G      50          1.557
LGA    V      51      V      51          3.541
LGA    N      52      N      52          2.567
LGA    F      53      F      53          1.077
LGA    L      54      L      54          2.881
LGA    V      55      V      55          3.377
LGA    A      56      A      56          1.916
LGA    D      57      D      57          2.096
LGA    A      58      A      58          3.420
LGA    L      59      L      59          3.001
LGA    K      60      K      60          2.134
LGA    Q      61      Q      61          2.855
LGA    H      62      H      62          3.320
LGA    R      63      R      63          3.114
LGA    H      64      H      64          2.915
LGA    R      65      R      65          3.083
LGA    R      66      R      66          3.293
LGA    D      67      D      67          3.466
LGA    D      68      D      68          2.975
LGA    V      69      V      69          2.925
LGA    I      70      I      70          3.613
LGA    V      71      V      71          3.296
LGA    M      72      M      72          2.478
LGA    L      73      L      73          3.718
LGA    S      74      S      74          3.901
LGA    A      75      A      75          2.339
LGA    R      76      R      76          2.176
LGA    G      77      G      77          5.668
LGA    V      78      V      78          2.841
LGA    T      79      T      79          3.111
LGA    A      80      A      80          4.723
LGA    P      81      P      81          1.773
LGA    I      82      I      82          1.795
LGA    A      83      A      83          4.930
LGA    A      84      A      84          6.271
LGA    A      85      A      85          9.507
LGA    G      86      G      86         12.251
LGA    Y      87      Y      87         11.942
LGA    Q      88      Q      88         16.530
LGA    L      89      L      89         16.615
LGA    P      90      P      90         16.533
LGA    M      91      M      91         17.820
LGA    Q      92      Q      92         21.021
LGA    V      93      V      93         22.094
LGA    S      94      S      94         25.157
LGA    S      95      S      95         25.495
LGA    A      96      A      96         24.203
LGA    A      97      A      97         24.620
LGA    D      98      D      98         20.965
LGA    A      99      A      99         18.476
LGA    A     100      A     100         19.727
LGA    R     101      R     101         18.448
LGA    L     102      L     102         13.587
LGA    A     103      A     103         13.081
LGA    V     104      V     104         14.754
LGA    R     105      R     105         12.506
LGA    M     106      M     106          7.775
LGA    E     107      E     107          8.604
LGA    N     108      N     108         11.430
LGA    D     109      D     109          8.854
LGA    G     110      G     110          5.486
LGA    A     111      A     111          8.927
LGA    T     112      T     112         12.309
LGA    A     113      A     113         10.441
LGA    W     114      W     114          9.342
LGA    R     115      R     115         13.601
LGA    A     116      A     116         16.532
LGA    V     117      V     117         15.245
LGA    V     118      V     118         15.310
LGA    E     119      E     119         20.292
LGA    H     120      H     120         22.009
LGA    A     121      A     121         21.048
LGA    E     122      E     122         20.542
LGA    T     123      T     123         18.197
LGA    A     124      A     124         16.065
LGA    D     125      D     125         17.450
LGA    D     126      D     126         17.171
LGA    R     127      R     127         14.726
LGA    V     128      V     128         15.162
LGA    F     129      F     129         16.383
LGA    A     130      A     130         14.414
LGA    S     131      S     131         15.802
LGA    T     132      T     132         18.291
LGA    A     133      A     133         16.560
LGA    L     134      L     134         17.213
LGA    T     135      T     135         21.592
LGA    E     136      E     136         22.479
LGA    S     137      S     137         19.980
LGA    A     138      A     138         24.363
LGA    V     139      V     139         28.549
LGA    M     140      M     140         26.536
LGA    A     141      A     141         26.737
LGA    T     142      T     142         32.991
LGA    R     143      R     143         34.489
LGA    W     144      W     144         31.742
LGA    N     145      N     145         35.562
LGA    R     146      R     146         41.919
LGA    V     147      V     147         41.600
LGA    L     148      L     148         43.907
LGA    G     149      G     149         50.868
LGA    A     150      A     150         53.320
LGA    W     151      W     151         54.021
LGA    P     152      P     152         54.970
LGA    I     153      I     153         55.912
LGA    T     154      T     154         59.178
LGA    A     155      A     155         57.789
LGA    A     156      A     156         58.308
LGA    F     157      F     157         64.730
LGA    P     158      P     158         66.333

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  162  142    4.0     35    2.93    24.648    22.030     1.154

LGA_LOCAL      RMSD =  2.933  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.697  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 16.068  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.649028 * X  +  -0.425746 * Y  +  -0.630478 * Z  +  32.195576
  Y_new =   0.619570 * X  +  -0.185113 * Y  +   0.762802 * Z  +   4.364075
  Z_new =  -0.441469 * X  +  -0.885705 * Y  +   0.143636 * Z  +  25.646580 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.410025    1.731568  [ DEG:   -80.7885     99.2115 ]
  Theta =   0.457236    2.684357  [ DEG:    26.1977    153.8023 ]
  Phi   =   0.762181   -2.379412  [ DEG:    43.6698   -136.3302 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS393_4                                  
REMARK     2: T0385.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS393_4.T0385.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  162  142   4.0   35   2.93  22.030    16.07
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS393_4
PFRMAT TS
TARGET T0385
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      44.507 -27.321  17.102  1.00 25.00           C
ATOM      2  CA  THR     2      41.866 -24.650  17.439  1.00 25.00           C
ATOM      3  CA  SER     3      40.794 -22.555  14.472  1.00 25.00           C
ATOM      4  CA  SER     4      44.260 -21.007  14.688  1.00 25.00           C
ATOM      5  CA  GLU     5      44.791 -17.239  14.962  1.00 25.00           C
ATOM      6  CA  PRO     6      44.586 -14.667  17.734  1.00 25.00           C
ATOM      7  CA  ALA     7      45.433 -11.803  20.088  1.00 25.00           C
ATOM      8  CA  HIS     8      48.932 -12.316  21.392  1.00 25.00           C
ATOM      9  CA  GLY     9      50.098 -13.907  24.624  1.00 25.00           C
ATOM     10  CA  ALA    10      51.432 -11.587  27.287  1.00 25.00           C
ATOM     11  CA  THR    11      49.613 -13.490  30.081  1.00 25.00           C
ATOM     12  CA  PRO    12      48.187 -13.996  33.631  1.00 25.00           C
ATOM     13  CA  LYS    13      46.404 -10.597  33.820  1.00 25.00           C
ATOM     14  CA  ARG    14      46.487  -8.381  36.948  1.00 25.00           C
ATOM     15  CA  SER    15      46.872  -5.188  38.940  1.00 25.00           C
ATOM     16  CA  PRO    16      50.568  -5.500  39.813  1.00 25.00           C
ATOM     17  CA  SER    17      51.282  -2.337  37.779  1.00 25.00           C
ATOM     18  CA  GLU    18      51.217   1.356  38.671  1.00 25.00           C
ATOM     19  CA  GLY    19      53.582   1.570  35.653  1.00 25.00           C
ATOM     20  CA  SER    20      52.407   4.800  33.992  1.00 25.00           C
ATOM     21  CA  ALA    21      50.871   7.690  32.058  1.00 25.00           C
ATOM     22  CA  ASP    22      48.466  10.434  30.896  1.00 25.00           C
ATOM     23  CA  ASN    23      48.464   8.968  27.358  1.00 25.00           C
ATOM     24  CA  ALA    24      47.724   5.487  28.773  1.00 25.00           C
ATOM     25  CA  ALA    25      44.837   6.916  30.845  1.00 25.00           C
ATOM     26  CA  LEU    26      43.434   8.655  27.734  1.00 25.00           C
ATOM     27  CA  CYS    27      43.663   5.376  25.768  1.00 25.00           C
ATOM     28  CA  ASP    28      41.841   3.530  28.586  1.00 25.00           C
ATOM     29  CA  ALA    29      39.099   6.205  28.599  1.00 25.00           C
ATOM     30  CA  LEU    30      38.728   5.877  24.801  1.00 25.00           C
ATOM     31  CA  ALA    31      38.452   2.071  25.132  1.00 25.00           C
ATOM     32  CA  VAL    32      35.774   2.475  27.839  1.00 25.00           C
ATOM     33  CA  GLU    33      33.833   4.895  25.593  1.00 25.00           C
ATOM     34  CA  HIS    34      34.040   2.405  22.691  1.00 25.00           C
ATOM     35  CA  ALA    35      32.764  -0.395  24.969  1.00 25.00           C
ATOM     36  CA  THR    36      29.854   1.822  26.105  1.00 25.00           C
ATOM     37  CA  ILE    37      28.996   2.606  22.456  1.00 25.00           C
ATOM     38  CA  TYR    38      29.058  -1.129  21.613  1.00 25.00           C
ATOM     39  CA  GLY    39      26.429  -0.147  19.114  1.00 25.00           C
ATOM     40  CA  TYR    40      23.947   2.092  17.380  1.00 25.00           C
ATOM     41  CA  GLY    41      22.379   5.322  18.645  1.00 25.00           C
ATOM     42  CA  ILE    42      19.082   7.134  19.211  1.00 25.00           C
ATOM     43  CA  VAL    43      19.327  10.208  17.067  1.00 25.00           C
ATOM     44  CA  SER    44      19.299  12.970  14.392  1.00 25.00           C
ATOM     45  CA  ALA    45      21.992  11.390  12.173  1.00 25.00           C
ATOM     46  CA  LEU    46      23.651   8.770   9.895  1.00 25.00           C
ATOM     47  CA  SER    47      26.275  11.237   8.760  1.00 25.00           C
ATOM     48  CA  PRO    48      25.814  14.403   6.603  1.00 25.00           C
ATOM     49  CA  PRO    49      26.262  17.532   4.429  1.00 25.00           C
ATOM     50  CA  GLY    50      29.810  18.255   3.464  1.00 25.00           C
ATOM     51  CA  VAL    51      30.474  14.602   4.400  1.00 25.00           C
ATOM     52  CA  ASN    52      34.028  15.504   5.504  1.00 25.00           C
ATOM     53  CA  PHE    53      32.664  18.379   7.634  1.00 25.00           C
ATOM     54  CA  LEU    54      30.116  16.012   9.240  1.00 25.00           C
ATOM     55  CA  VAL    55      32.899  13.493  10.001  1.00 25.00           C
ATOM     56  CA  ALA    56      35.012  16.269  11.580  1.00 25.00           C
ATOM     57  CA  ASP    57      32.029  17.358  13.719  1.00 25.00           C
ATOM     58  CA  ALA    58      31.484  13.738  14.846  1.00 25.00           C
ATOM     59  CA  LEU    59      35.190  13.441  15.764  1.00 25.00           C
ATOM     60  CA  LYS    60      34.980  16.698  17.768  1.00 25.00           C
ATOM     61  CA  GLN    61      31.880  15.399  19.603  1.00 25.00           C
ATOM     62  CA  HIS    62      33.700  12.127  20.411  1.00 25.00           C
ATOM     63  CA  ARG    63      36.701  14.097  21.745  1.00 25.00           C
ATOM     64  CA  HIS    64      34.373  16.218  23.922  1.00 25.00           C
ATOM     65  CA  ARG    65      32.713  13.046  25.281  1.00 25.00           C
ATOM     66  CA  ARG    66      36.151  11.560  26.081  1.00 25.00           C
ATOM     67  CA  ASP    67      37.149  14.783  27.893  1.00 25.00           C
ATOM     68  CA  ASP    68      33.897  14.683  29.914  1.00 25.00           C
ATOM     69  CA  VAL    69      34.561  11.030  30.848  1.00 25.00           C
ATOM     70  CA  ILE    70      38.115  11.932  31.952  1.00 25.00           C
ATOM     71  CA  VAL    71      36.750  14.807  34.083  1.00 25.00           C
ATOM     72  CA  MET    72      34.203  12.440  35.688  1.00 25.00           C
ATOM     73  CA  LEU    73      36.986   9.921  36.449  1.00 25.00           C
ATOM     74  CA  SER    74      39.100  12.697  38.029  1.00 25.00           C
ATOM     75  CA  ALA    75      36.116  13.786  40.168  1.00 25.00           C
ATOM     76  CA  ARG    76      34.115  10.762  41.454  1.00 25.00           C
ATOM     77  CA  GLY    77      30.700   9.438  40.431  1.00 25.00           C
ATOM     78  CA  VAL    78      32.425   6.622  38.541  1.00 25.00           C
ATOM     79  CA  THR    79      30.685   3.442  39.490  1.00 25.00           C
ATOM     80  CA  ALA    80      30.002   1.795  36.150  1.00 25.00           C
ATOM     81  CA  PRO    81      30.063   5.119  34.249  1.00 25.00           C
ATOM     82  CA  ILE    82      31.653   3.389  31.225  1.00 25.00           C
ATOM     83  CA  ALA    83      28.961   0.668  31.335  1.00 25.00           C
ATOM     84  CA  ALA    84      26.226   3.345  31.479  1.00 25.00           C
ATOM     85  CA  ALA    85      23.104   1.143  31.200  1.00 25.00           C
ATOM     86  CA  GLY    86      20.226   3.417  32.273  1.00 25.00           C
ATOM     87  CA  TYR    87      21.912   6.808  33.027  1.00 25.00           C
ATOM     88  CA  GLN    88      25.091   8.362  34.445  1.00 25.00           C
ATOM     89  CA  LEU    89      27.621   9.071  31.692  1.00 25.00           C
ATOM     90  CA  PRO    90      29.331   7.582  28.664  1.00 25.00           C
ATOM     91  CA  MET    91      29.518   7.479  24.852  1.00 25.00           C
ATOM     92  CA  GLN    92      32.463   8.387  22.647  1.00 25.00           C
ATOM     93  CA  VAL    93      35.397   6.958  20.660  1.00 25.00           C
ATOM     94  CA  SER    94      37.568   4.001  19.484  1.00 25.00           C
ATOM     95  CA  SER    95      37.019   0.205  19.324  1.00 25.00           C
ATOM     96  CA  ALA    96      36.021  -2.631  16.977  1.00 25.00           C
ATOM     97  CA  ALA    97      35.621  -0.549  13.787  1.00 25.00           C
ATOM     98  CA  ASP    98      31.818  -0.960  13.966  1.00 25.00           C
ATOM     99  CA  ALA    99      31.847   0.142  17.634  1.00 25.00           C
ATOM    100  CA  ALA   100      33.948   3.210  16.721  1.00 25.00           C
ATOM    101  CA  ARG   101      31.498   4.083  13.910  1.00 25.00           C
ATOM    102  CA  LEU   102      28.555   3.752  16.339  1.00 25.00           C
ATOM    103  CA  ALA   103      30.336   6.034  18.846  1.00 25.00           C
ATOM    104  CA  VAL   104      30.968   8.613  16.087  1.00 25.00           C
ATOM    105  CA  ARG   105      27.277   8.475  15.078  1.00 25.00           C
ATOM    106  CA  MET   106      26.234   8.984  18.728  1.00 25.00           C
ATOM    107  CA  GLU   107      28.596  11.986  19.010  1.00 25.00           C
ATOM    108  CA  ASN   108      27.125  13.474  15.802  1.00 25.00           C
ATOM    109  CA  ASP   109      23.582  12.996  17.174  1.00 25.00           C
ATOM    110  CA  GLY   110      24.591  14.714  20.446  1.00 25.00           C
ATOM    111  CA  ALA   111      26.092  17.636  18.477  1.00 25.00           C
ATOM    112  CA  THR   112      22.870  17.944  16.430  1.00 25.00           C
ATOM    113  CA  ALA   113      20.797  17.955  19.649  1.00 25.00           C
ATOM    114  CA  TRP   114      23.047  20.683  21.118  1.00 25.00           C
ATOM    115  CA  ARG   115      22.648  22.765  17.928  1.00 25.00           C
ATOM    116  CA  ALA   116      18.844  22.353  18.107  1.00 25.00           C
ATOM    117  CA  VAL   117      18.873  23.455  21.775  1.00 25.00           C
ATOM    118  CA  VAL   118      20.974  26.524  20.862  1.00 25.00           C
ATOM    119  CA  GLU   119      18.524  27.397  18.052  1.00 25.00           C
ATOM    120  CA  HIS   120      15.581  27.065  20.480  1.00 25.00           C
ATOM    121  CA  ALA   121      17.361  29.347  22.988  1.00 25.00           C
ATOM    122  CA  GLU   122      19.086  26.985  25.481  1.00 25.00           C
ATOM    123  CA  THR   123      22.131  24.981  26.567  1.00 25.00           C
ATOM    124  CA  ALA   124      23.843  21.621  27.114  1.00 25.00           C
ATOM    125  CA  ASP   125      21.150  19.291  28.365  1.00 25.00           C
ATOM    126  CA  ASP   126      20.838  18.075  24.747  1.00 25.00           C
ATOM    127  CA  ARG   127      24.425  16.735  24.862  1.00 25.00           C
ATOM    128  CA  VAL   128      23.662  14.911  28.144  1.00 25.00           C
ATOM    129  CA  PHE   129      20.514  13.381  26.591  1.00 25.00           C
ATOM    130  CA  ALA   130      22.542  12.232  23.552  1.00 25.00           C
ATOM    131  CA  SER   131      25.158  10.657  25.863  1.00 25.00           C
ATOM    132  CA  THR   132      22.394   8.849  27.802  1.00 25.00           C
ATOM    133  CA  ALA   133      20.910   7.547  24.519  1.00 25.00           C
ATOM    134  CA  LEU   134      24.362   6.303  23.423  1.00 25.00           C
ATOM    135  CA  THR   135      24.820   4.533  26.788  1.00 25.00           C
ATOM    136  CA  GLU   136      21.381   2.888  26.418  1.00 25.00           C
ATOM    137  CA  SER   137      22.290   1.726  22.884  1.00 25.00           C
ATOM    138  CA  ALA   138      25.586   0.270  24.183  1.00 25.00           C
ATOM    139  CA  VAL   139      23.704  -1.566  26.969  1.00 25.00           C
ATOM    140  CA  MET   140      21.235  -2.977  24.404  1.00 25.00           C
ATOM    141  CA  ALA   141      24.146  -4.155  22.212  1.00 25.00           C
ATOM    142  CA  THR   142      25.777  -5.839  25.240  1.00 25.00           C
ATOM    143  CA  ARG   143      22.472  -7.580  26.083  1.00 25.00           C
ATOM    144  CA  TRP   144      22.162  -8.796  22.465  1.00 25.00           C
ATOM    145  CA  ASN   145      25.747 -10.136  22.581  1.00 25.00           C
ATOM    146  CA  ARG   146      26.180 -13.478  24.256  1.00 25.00           C
ATOM    147  CA  VAL   147      27.368 -13.504  27.855  1.00 25.00           C
ATOM    148  CA  LEU   148      28.418 -14.178  31.413  1.00 25.00           C
ATOM    149  CA  GLY   149      30.306 -17.523  31.564  1.00 25.00           C
ATOM    150  CA  ALA   150      33.750 -17.100  33.205  1.00 25.00           C
ATOM    151  CA  TRP   151      36.515 -16.645  35.778  1.00 25.00           C
ATOM    152  CA  PRO   152      34.369 -14.232  37.842  1.00 25.00           C
ATOM    153  CA  ILE   153      32.081 -15.206  40.729  1.00 25.00           C
ATOM    154  CA  THR   154      32.660 -15.946  44.385  1.00 25.00           C
ATOM    155  CA  ALA   155      31.360 -13.189  46.743  1.00 25.00           C
ATOM    156  CA  ALA   156      33.928 -10.394  46.865  1.00 25.00           C
ATOM    157  CA  PHE   157      37.275 -10.544  48.675  1.00 25.00           C
ATOM    158  CA  PRO   158      37.510 -14.039  50.282  1.00 25.00           C
ATOM    159  CA  GLY   159      41.075 -15.075  51.138  1.00 25.00           C
ATOM    160  CA  GLY   160      40.110 -14.468  54.749  1.00 25.00           C
ATOM    161  CA  ASP   161      42.789 -14.783  57.411  1.00 25.00           C
ATOM    162  CA  GLU   162      46.280 -14.947  56.008  1.00 25.00           C
TER
END
