
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  162 (  162),  selected  142 , name T0385TS393_5
# Molecule2: number of CA atoms  142 ( 1050),  selected  142 , name T0385.pdb
# PARAMETERS: T0385TS393_5.T0385.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        44 - 84          4.97    25.96
  LONGEST_CONTINUOUS_SEGMENT:    41        45 - 85          4.99    26.05
  LCS_AVERAGE:     26.25

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        50 - 77          1.86    19.57
  LONGEST_CONTINUOUS_SEGMENT:    28        95 - 122         1.76    21.39
  LCS_AVERAGE:     14.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        50 - 75          0.94    20.14
  LONGEST_CONTINUOUS_SEGMENT:    26        51 - 76          0.69    20.05
  LONGEST_CONTINUOUS_SEGMENT:    26        96 - 121         0.76    21.30
  LCS_AVERAGE:     11.97

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     S      17     S      17      4    4   31     1    4    8   11   15   19   27   28   31   36   44   48   53   57   60   61   61   62   63   64 
LCS_GDT     E      18     E      18      4    4   31     3    4    4    5    7   10   17   25   31   38   44   50   53   58   60   61   61   62   63   64 
LCS_GDT     G      19     G      19      4   20   31     3    4    4    7   10   13   17   27   31   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     S      20     S      20     19   20   31     3    4    4    4   19   21   27   28   29   32   46   49   52   57   60   61   61   62   63   64 
LCS_GDT     A      21     A      21     19   20   31    17   18   18   24   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     D      22     D      22     19   20   31    17   18   18   18   20   21   27   28   38   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     N      23     N      23     19   20   31    17   18   18   18   20   21   27   28   38   40   48   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      24     A      24     19   20   31    17   18   18   18   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      25     A      25     19   20   31    17   18   18   24   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     L      26     L      26     19   20   31    17   18   18   18   20   21   27   32   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     C      27     C      27     19   20   31    17   18   18   18   20   23   34   41   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     D      28     D      28     19   20   31    17   18   26   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      29     A      29     19   20   31    17   18   18   24   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     L      30     L      30     19   20   31    17   18   18   18   20   21   29   41   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      31     A      31     19   20   31    17   18   18   18   30   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     V      32     V      32     19   20   31    17   21   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     E      33     E      33     19   20   31    17   18   18   24   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     H      34     H      34     19   20   31    17   18   18   18   20   25   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      35     A      35     19   20   31    17   18   18   18   24   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     T      36     T      36     19   20   31    17   24   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     I      37     I      37     19   20   31    17   18   18   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     Y      38     Y      38     19   20   31    17   18   18   18   20   31   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     G      39     G      39      3   20   31     3    3    3    6   15   21   27   28   32   35   43   50   53   58   60   61   61   62   63   66 
LCS_GDT     Y      40     Y      40      3    4   31     3    4    4    5   12   14   17   23   28   33   36   43   53   58   60   61   61   62   65   67 
LCS_GDT     G      41     G      41      3    4   31     3    4    4    5   10   14   17   25   29   33   36   41   53   58   60   61   61   62   63   66 
LCS_GDT     I      42     I      42      3    4   31     3    4    4    4    5    8    9   11   17   19   25   34   35   39   44   47   48   52   60   66 
LCS_GDT     V      43     V      43      3    4   31     3    3    3    3    4    5    8   10   12   14   17   25   35   39   44   47   48   51   53   58 
LCS_GDT     S      44     S      44      3    4   41     3    3    3    3    5    7   13   14   16   19   23   29   35   41   43   45   48   52   56   66 
LCS_GDT     A      45     A      45      3    5   41     3    3    3    5    5    7   13   16   17   19   24   30   38   41   43   45   48   51   56   66 
LCS_GDT     L      46     L      46      3    5   41     1    3    3    5    5    7   13   16   17   20   30   39   39   41   43   45   48   51   56   61 
LCS_GDT     S      47     S      47      3    5   41     0    3    3    4    6    8   13   16   19   32   36   39   39   41   46   46   51   52   57   66 
LCS_GDT     P      48     P      48      4    5   41     3    3    6    6    6    7   10   14   18   28   36   39   39   41   55   60   61   62   63   66 
LCS_GDT     P      49     P      49      4    5   41     3    3    6    6    7    9   18   27   31   38   44   50   53   58   60   61   61   62   63   66 
LCS_GDT     G      50     G      50     26   28   41     3    3    6   24   29   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     V      51     V      51     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     N      52     N      52     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   52   58   60   61   61   62   63   66 
LCS_GDT     F      53     F      53     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     L      54     L      54     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     V      55     V      55     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     A      56     A      56     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     D      57     D      57     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     A      58     A      58     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     L      59     L      59     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     K      60     K      60     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     Q      61     Q      61     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     H      62     H      62     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     R      63     R      63     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     H      64     H      64     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   67 
LCS_GDT     R      65     R      65     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   67 
LCS_GDT     R      66     R      66     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   67 
LCS_GDT     D      67     D      67     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   67 
LCS_GDT     D      68     D      68     26   28   41    13   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     V      69     V      69     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     I      70     I      70     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     V      71     V      71     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     M      72     M      72     26   28   41    14   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     L      73     L      73     26   28   41    13   25   27   30   31   34   38   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     S      74     S      74     26   28   41     8   25   27   30   31   34   38   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     A      75     A      75     26   28   41    15   25   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     R      76     R      76     26   28   41     3   16   27   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   63   66 
LCS_GDT     G      77     G      77      4   28   41     3    4    5    5    7    9   13   28   37   44   47   50   53   58   60   61   61   62   63   66 
LCS_GDT     V      78     V      78      4    5   41     3    4    5    5    7    9   12   21   27   33   36   39   47   53   58   61   61   62   63   66 
LCS_GDT     T      79     T      79      4    5   41     3    4    5    5    7    9   12   15   19   33   36   39   39   44   47   51   57   61   63   66 
LCS_GDT     A      80     A      80      4    5   41     3    4    5    5    6    7   12   13   18   32   36   39   39   41   43   47   49   56   60   66 
LCS_GDT     P      81     P      81      3    5   41     3    3    3    4    6   11   14   19   23   32   36   39   39   41   43   48   55   59   62   66 
LCS_GDT     I      82     I      82      3    5   41     0    3    4    7    9   10   21   26   29   32   36   39   39   41   43   47   53   59   62   66 
LCS_GDT     A      83     A      83      6    7   41     0    4    6    6    7    8   11   14   19   32   36   39   39   41   43   45   52   59   62   67 
LCS_GDT     A      84     A      84      6    7   41     3    4    6    6    7   10   11   14   19   22   34   39   39   41   43   45   46   54   62   67 
LCS_GDT     A      85     A      85      6    7   41     3    4    6    6    7    9   11   14   17   19   25   32   39   41   43   45   46   48   50   55 
LCS_GDT     G      86     G      86      6    7   39     3    4    6    6    7   10   11   14   17   19   25   29   33   39   43   45   48   49   50   63 
LCS_GDT     Y      87     Y      87      6    7   39     0    4    6    6   11   27   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     Q      88     Q      88      6    7   39     3    4    6    6    7   10   10   19   28   31   32   34   37   42   44   47   54   61   65   67 
LCS_GDT     L      89     L      89      3    7   39     3    3    4    5    7   10   10   14   17   19   27   31   36   42   44   47   49   54   61   67 
LCS_GDT     P      90     P      90      5    6   39     3    4    5    5    5    8    8   15   30   31   32   32   36   38   44   47   48   54   59   66 
LCS_GDT     M      91     M      91      5    6   39     3    4    5    6    9   17   25   29   30   31   32   34   37   42   44   47   48   51   56   61 
LCS_GDT     Q      92     Q      92      5    7   39     3    5    5    6    8   10   16   19   26   31   32   34   37   42   44   47   48   51   52   61 
LCS_GDT     V      93     V      93      5    7   39     3    5    5    6    8   15   25   29   30   31   32   34   37   42   44   47   48   51   56   64 
LCS_GDT     S      94     S      94      5    7   39     3    5    5    6    8   10   13   20   26   30   32   34   37   42   44   47   48   51   52   53 
LCS_GDT     S      95     S      95      5   28   39     3    5    5    6   11   24   27   30   30   33   34   35   37   42   44   47   48   51   56   64 
LCS_GDT     A      96     A      96     26   28   39     4    7   25   26   28   28   29   30   31   33   34   35   37   42   44   49   56   59   62   67 
LCS_GDT     A      97     A      97     26   28   39     4    4   11   26   28   28   29   30   31   33   34   35   37   42   44   49   54   58   62   67 
LCS_GDT     D      98     D      98     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   59   65   67 
LCS_GDT     A      99     A      99     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     A     100     A     100     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     R     101     R     101     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     L     102     L     102     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     A     103     A     103     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     V     104     V     104     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     R     105     R     105     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     M     106     M     106     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     E     107     E     107     26   28   39    17   23   25   26   28   28   29   30   31   33   34   37   37   42   46   52   58   61   65   67 
LCS_GDT     N     108     N     108     26   28   39    17   23   25   26   28   28   29   30   31   33   34   37   37   42   46   52   58   61   65   67 
LCS_GDT     D     109     D     109     26   28   39    17   23   25   26   28   28   29   30   31   33   35   37   37   42   46   52   58   61   65   67 
LCS_GDT     G     110     G     110     26   28   39    17   23   25   26   28   28   29   30   31   33   35   37   38   42   46   52   58   61   65   67 
LCS_GDT     A     111     A     111     26   28   39    17   23   25   26   28   28   29   30   31   33   34   37   37   42   46   52   58   61   65   67 
LCS_GDT     T     112     T     112     26   28   39    17   23   25   26   28   28   29   30   31   33   34   37   37   42   46   52   58   61   65   67 
LCS_GDT     A     113     A     113     26   28   39    17   23   25   26   28   28   29   30   31   33   34   37   37   42   46   52   58   61   65   67 
LCS_GDT     W     114     W     114     26   28   39    17   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     R     115     R     115     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     A     116     A     116     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     V     117     V     117     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     V     118     V     118     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     E     119     E     119     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   56   61   65   67 
LCS_GDT     H     120     H     120     26   28   39    16   23   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     A     121     A     121     26   28   39     4   22   25   26   28   28   29   30   31   33   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     E     122     E     122      3   28   39     3    3    5    5    6   18   25   28   31   32   34   35   37   42   46   52   58   61   65   67 
LCS_GDT     T     123     T     123      3   24   39     0    3    5    5    6   16   23   25   28   31   33   35   37   42   46   52   58   61   65   67 
LCS_GDT     A     124     A     124     22   26   39     3    3   10   22   23   24   26   27   30   30   34   36   37   42   46   52   58   61   65   67 
LCS_GDT     D     125     D     125     22   26   39    21   21   21   22   23   24   26   27   30   30   34   36   37   40   41   45   58   60   65   67 
LCS_GDT     D     126     D     126     22   26   38    21   21   21   22   23   24   26   27   30   30   34   36   37   40   41   48   58   61   65   67 
LCS_GDT     R     127     R     127     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   42   46   52   58   61   65   67 
LCS_GDT     V     128     V     128     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   42   46   52   58   61   65   67 
LCS_GDT     F     129     F     129     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   40   42   50   58   61   65   67 
LCS_GDT     A     130     A     130     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   40   46   52   58   61   65   67 
LCS_GDT     S     131     S     131     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   42   46   52   58   61   65   67 
LCS_GDT     T     132     T     132     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   39   43   51   56   58   61   65   67 
LCS_GDT     A     133     A     133     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   39   42   46   52   59   62   65   67 
LCS_GDT     L     134     L     134     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   39   42   46   52   58   61   65   67 
LCS_GDT     T     135     T     135     22   26   36    21   21   21   22   23   24   26   27   30   30   46   47   50   53   55   57   60   62   65   67 
LCS_GDT     E     136     E     136     22   26   36    21   21   26   30   32   34   39   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     S     137     S     137     22   26   36    21   21   21   22   23   24   34   38   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     A     138     A     138     22   26   36    21   21   21   22   23   24   32   42   44   48   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     V     139     V     139     22   26   36    21   21   21   22   23   24   26   29   36   41   44   48   53   58   60   61   61   62   65   67 
LCS_GDT     M     140     M     140     22   26   36    21   21   21   22   23   24   26   27   30   34   43   48   52   58   60   61   61   62   65   67 
LCS_GDT     A     141     A     141     22   26   36    21   21   21   22   23   24   33   40   44   46   49   50   53   58   60   61   61   62   65   67 
LCS_GDT     T     142     T     142     22   26   36    21   21   21   22   23   24   26   27   30   30   36   36   41   43   49   56   60   61   65   67 
LCS_GDT     R     143     R     143     22   26   36    21   21   21   22   23   24   26   27   30   30   31   31   35   42   46   52   58   61   65   67 
LCS_GDT     W     144     W     144     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   40   46   52   58   61   65   67 
LCS_GDT     N     145     N     145     22   26   36    21   21   21   22   23   24   26   27   30   30   34   36   37   40   44   50   58   61   65   67 
LCS_GDT     R     146     R     146      3   26   36     3    3    8   11   14   19   23   25   28   29   34   36   37   40   46   52   58   61   65   67 
LCS_GDT     V     147     V     147      3   26   36     3    3    3    5   10   21   26   27   30   30   34   36   37   40   41   49   58   60   65   67 
LCS_GDT     L     148     L     148      3   26   36     3    4    9   22   23   24   26   27   30   30   34   36   37   40   41   42   52   59   65   67 
LCS_GDT     G     149     G     149      3   26   36     3    3    5    6   15   23   25   26   30   30   34   36   37   40   41   42   44   47   56   63 
LCS_GDT     A     150     A     150      3    7   36     3    3    5    6    7   15   25   27   30   30   34   36   37   40   41   42   44   57   61   65 
LCS_GDT     W     151     W     151      4    7   36     3    3    5    6    7    7    9   27   30   30   34   36   37   40   41   42   44   49   59   65 
LCS_GDT     P     152     P     152      4    7   36     3    3    5    6    9   24   26   27   30   30   34   36   37   40   41   42   44   49   55   63 
LCS_GDT     I     153     I     153      4    7   36     3    3    5    6    8   15   26   27   30   30   31   31   32   33   37   41   44   45   48   51 
LCS_GDT     T     154     T     154      4    7   36     3    3    5    6    7    8   13   20   30   30   31   31   32   33   37   39   42   45   48   51 
LCS_GDT     A     155     A     155      4    7   36     3    4    4    5    7    7    8    9   11   13   16   22   28   32   34   36   39   45   48   50 
LCS_GDT     A     156     A     156      4    6   36     3    4    4    5    5    7    8    9   11   18   20   22   28   32   37   38   40   45   48   50 
LCS_GDT     F     157     F     157      4    6   36     3    4    4    5    5    6   12   14   16   19   23   26   31   33   37   39   41   45   48   50 
LCS_GDT     P     158     P     158      4    6   20     3    4    4    5    5    6   12   14   16   18   20   22   28   32   34   36   38   45   48   50 
LCS_AVERAGE  LCS_A:  17.55  (  11.97   14.42   26.25 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     27     30     32     34     39     42     44     48     49     50     53     58     60     61     61     62     65     67 
GDT PERCENT_CA  14.79  17.61  19.01  21.13  22.54  23.94  27.46  29.58  30.99  33.80  34.51  35.21  37.32  40.85  42.25  42.96  42.96  43.66  45.77  47.18
GDT RMS_LOCAL    0.25   0.58   0.72   1.02   1.46   1.55   2.07   2.17   2.28   2.82   2.89   2.99   3.83   4.30   4.41   4.58   4.62   4.70   7.23   7.30
GDT RMS_ALL_CA  27.37  20.20  19.65  19.25  19.51  19.44  19.31  19.25  19.20  19.55  19.52  19.53  19.82  19.67  19.82  19.74  19.81  19.80  19.56  19.70

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17          8.345
LGA    E      18      E      18          7.651
LGA    G      19      G      19          6.227
LGA    S      20      S      20          7.545
LGA    A      21      A      21          2.604
LGA    D      22      D      22          6.086
LGA    N      23      N      23          6.848
LGA    A      24      A      24          3.567
LGA    A      25      A      25          2.408
LGA    L      26      L      26          5.307
LGA    C      27      C      27          4.926
LGA    D      28      D      28          1.562
LGA    A      29      A      29          2.722
LGA    L      30      L      30          4.630
LGA    A      31      A      31          3.589
LGA    V      32      V      32          0.533
LGA    E      33      E      33          2.797
LGA    H      34      H      34          3.905
LGA    A      35      A      35          2.934
LGA    T      36      T      36          1.285
LGA    I      37      I      37          1.791
LGA    Y      38      Y      38          3.748
LGA    G      39      G      39          8.451
LGA    Y      40      Y      40          9.402
LGA    G      41      G      41         12.240
LGA    I      42      I      42         17.772
LGA    V      43      V      43         17.716
LGA    S      44      S      44         16.848
LGA    A      45      A      45         18.074
LGA    L      46      L      46         18.753
LGA    S      47      S      47         17.067
LGA    P      48      P      48         12.962
LGA    P      49      P      49          9.414
LGA    G      50      G      50          3.149
LGA    V      51      V      51          2.110
LGA    N      52      N      52          2.382
LGA    F      53      F      53          1.978
LGA    L      54      L      54          1.550
LGA    V      55      V      55          1.734
LGA    A      56      A      56          1.826
LGA    D      57      D      57          1.691
LGA    A      58      A      58          1.757
LGA    L      59      L      59          1.459
LGA    K      60      K      60          1.405
LGA    Q      61      Q      61          1.789
LGA    H      62      H      62          1.916
LGA    R      63      R      63          1.039
LGA    H      64      H      64          1.046
LGA    R      65      R      65          2.113
LGA    R      66      R      66          2.082
LGA    D      67      D      67          1.202
LGA    D      68      D      68          1.335
LGA    V      69      V      69          2.588
LGA    I      70      I      70          2.532
LGA    V      71      V      71          1.889
LGA    M      72      M      72          2.527
LGA    L      73      L      73          3.876
LGA    S      74      S      74          3.775
LGA    A      75      A      75          3.039
LGA    R      76      R      76          2.625
LGA    G      77      G      77          6.849
LGA    V      78      V      78         10.620
LGA    T      79      T      79         15.654
LGA    A      80      A      80         16.823
LGA    P      81      P      81         18.055
LGA    I      82      I      82         16.724
LGA    A      83      A      83         21.712
LGA    A      84      A      84         26.172
LGA    A      85      A      85         27.149
LGA    G      86      G      86         28.051
LGA    Y      87      Y      87         28.360
LGA    Q      88      Q      88         32.199
LGA    L      89      L      89         28.397
LGA    P      90      P      90         27.183
LGA    M      91      M      91         28.407
LGA    Q      92      Q      92         29.732
LGA    V      93      V      93         26.808
LGA    S      94      S      94         26.900
LGA    S      95      S      95         27.750
LGA    A      96      A      96         29.081
LGA    A      97      A      97         30.794
LGA    D      98      D      98         30.125
LGA    A      99      A      99         24.449
LGA    A     100      A     100         21.450
LGA    R     101      R     101         25.370
LGA    L     102      L     102         24.362
LGA    A     103      A     103         18.182
LGA    V     104      V     104         19.926
LGA    R     105      R     105         24.738
LGA    M     106      M     106         20.991
LGA    E     107      E     107         17.910
LGA    N     108      N     108         23.560
LGA    D     109      D     109         26.171
LGA    G     110      G     110         22.241
LGA    A     111      A     111         23.913
LGA    T     112      T     112         29.840
LGA    A     113      A     113         29.531
LGA    W     114      W     114         27.924
LGA    R     115      R     115         32.042
LGA    A     116      A     116         35.795
LGA    V     117      V     117         34.415
LGA    V     118      V     118         35.602
LGA    E     119      E     119         40.688
LGA    H     120      H     120         42.593
LGA    A     121      A     121         41.353
LGA    E     122      E     122         41.049
LGA    T     123      T     123         35.911
LGA    A     124      A     124         31.454
LGA    D     125      D     125         25.239
LGA    D     126      D     126         26.560
LGA    R     127      R     127         26.568
LGA    V     128      V     128         20.577
LGA    F     129      F     129         16.920
LGA    A     130      A     130         19.342
LGA    S     131      S     131         17.042
LGA    T     132      T     132         10.093
LGA    A     133      A     133         10.424
LGA    L     134      L     134         11.536
LGA    T     135      T     135          7.879
LGA    E     136      E     136          1.822
LGA    S     137      S     137          5.042
LGA    A     138      A     138          3.791
LGA    V     139      V     139          6.448
LGA    M     140      M     140          7.845
LGA    A     141      A     141          5.277
LGA    T     142      T     142          9.972
LGA    R     143      R     143         14.941
LGA    W     144      W     144         14.974
LGA    N     145      N     145         13.318
LGA    R     146      R     146         15.467
LGA    V     147      V     147         21.130
LGA    L     148      L     148         19.048
LGA    G     149      G     149         22.869
LGA    A     150      A     150         29.624
LGA    W     151      W     151         33.119
LGA    P     152      P     152         32.357
LGA    I     153      I     153         27.453
LGA    T     154      T     154         28.398
LGA    A     155      A     155         26.221
LGA    A     156      A     156         29.035
LGA    F     157      F     157         32.482
LGA    P     158      P     158         30.731

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  162  142    4.0     42    2.17    27.817    24.596     1.854

LGA_LOCAL      RMSD =  2.165  Number of atoms =   42  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.606  Number of atoms =  142 
Std_ALL_ATOMS  RMSD = 15.634  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.650165 * X  +  -0.755706 * Y  +   0.078703 * Z  +  28.631987
  Y_new =   0.035092 * X  +   0.133341 * Y  +   0.990449 * Z  +  16.478317
  Z_new =  -0.758982 * X  +  -0.641194 * Y  +   0.113213 * Z  +  25.348270 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.396031    1.745561  [ DEG:   -79.9867    100.0133 ]
  Theta =   0.861748    2.279845  [ DEG:    49.3745    130.6255 ]
  Phi   =   0.053921   -3.087671  [ DEG:     3.0895   -176.9105 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS393_5                                  
REMARK     2: T0385.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS393_5.T0385.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  162  142   4.0   42   2.17  24.596    15.63
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS393_5
PFRMAT TS
TARGET T0385
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       7.191   4.575  13.868  1.00 25.00           C
ATOM      2  CA  THR     2      10.463   2.820  14.734  1.00 25.00           C
ATOM      3  CA  SER     3       8.996  -0.129  16.745  1.00 25.00           C
ATOM      4  CA  SER     4      10.716  -2.617  19.104  1.00 25.00           C
ATOM      5  CA  GLU     5      10.537  -3.817  22.649  1.00 25.00           C
ATOM      6  CA  PRO     6      14.360  -3.751  23.069  1.00 25.00           C
ATOM      7  CA  ALA     7      14.098  -1.817  26.333  1.00 25.00           C
ATOM      8  CA  HIS     8      14.901  -0.460  29.795  1.00 25.00           C
ATOM      9  CA  GLY     9      11.967  -0.080  32.092  1.00 25.00           C
ATOM     10  CA  ALA    10      12.337  -0.581  35.827  1.00 25.00           C
ATOM     11  CA  THR    11      11.141   2.947  36.719  1.00 25.00           C
ATOM     12  CA  PRO    12      11.056   4.166  40.340  1.00 25.00           C
ATOM     13  CA  LYS    13       8.154   6.652  40.899  1.00 25.00           C
ATOM     14  CA  ARG    14       8.064   9.655  43.244  1.00 25.00           C
ATOM     15  CA  SER    15       9.161  13.264  42.734  1.00 25.00           C
ATOM     16  CA  PRO    16       9.880  16.336  44.820  1.00 25.00           C
ATOM     17  CA  SER    17      13.321  15.384  46.175  1.00 25.00           C
ATOM     18  CA  GLU    18      16.752  13.981  46.963  1.00 25.00           C
ATOM     19  CA  GLY    19      20.317  15.323  46.669  1.00 25.00           C
ATOM     20  CA  SER    20      18.994  18.612  45.163  1.00 25.00           C
ATOM     21  CA  ALA    21      20.706  17.341  41.970  1.00 25.00           C
ATOM     22  CA  ASP    22      20.774  19.818  39.051  1.00 25.00           C
ATOM     23  CA  ASN    23      24.535  19.242  38.617  1.00 25.00           C
ATOM     24  CA  ALA    24      23.979  15.453  38.614  1.00 25.00           C
ATOM     25  CA  ALA    25      21.229  15.834  35.976  1.00 25.00           C
ATOM     26  CA  LEU    26      23.558  17.979  33.822  1.00 25.00           C
ATOM     27  CA  CYS    27      26.318  15.341  34.135  1.00 25.00           C
ATOM     28  CA  ASP    28      23.848  12.600  33.108  1.00 25.00           C
ATOM     29  CA  ALA    29      22.765  14.677  30.078  1.00 25.00           C
ATOM     30  CA  LEU    30      26.428  15.185  29.086  1.00 25.00           C
ATOM     31  CA  ALA    31      27.057  11.420  29.387  1.00 25.00           C
ATOM     32  CA  VAL    32      23.993  10.708  27.203  1.00 25.00           C
ATOM     33  CA  GLU    33      25.246  13.209  24.587  1.00 25.00           C
ATOM     34  CA  HIS    34      28.694  11.540  24.607  1.00 25.00           C
ATOM     35  CA  ALA    35      27.061   8.107  24.143  1.00 25.00           C
ATOM     36  CA  THR    36      24.999   9.457  21.211  1.00 25.00           C
ATOM     37  CA  ILE    37      28.166  10.909  19.621  1.00 25.00           C
ATOM     38  CA  TYR    38      29.946   7.543  20.032  1.00 25.00           C
ATOM     39  CA  GLY    39      32.552   7.358  17.253  1.00 25.00           C
ATOM     40  CA  TYR    40      35.930   9.175  17.017  1.00 25.00           C
ATOM     41  CA  GLY    41      39.070  11.179  16.243  1.00 25.00           C
ATOM     42  CA  ILE    42      39.342  12.378  19.851  1.00 25.00           C
ATOM     43  CA  VAL    43      39.087  16.062  19.065  1.00 25.00           C
ATOM     44  CA  SER    44      38.362  19.461  17.627  1.00 25.00           C
ATOM     45  CA  ALA    45      37.561  19.207  13.931  1.00 25.00           C
ATOM     46  CA  LEU    46      36.293  20.864  10.790  1.00 25.00           C
ATOM     47  CA  SER    47      34.741  24.370  10.508  1.00 25.00           C
ATOM     48  CA  PRO    48      31.942  22.412   8.758  1.00 25.00           C
ATOM     49  CA  PRO    49      32.500  21.408   5.132  1.00 25.00           C
ATOM     50  CA  GLY    50      29.077  19.773   4.592  1.00 25.00           C
ATOM     51  CA  VAL    51      26.653  17.335   6.279  1.00 25.00           C
ATOM     52  CA  ASN    52      29.400  14.670   6.430  1.00 25.00           C
ATOM     53  CA  PHE    53      31.811  17.209   7.981  1.00 25.00           C
ATOM     54  CA  LEU    54      29.168  18.168  10.582  1.00 25.00           C
ATOM     55  CA  VAL    55      28.617  14.471  11.419  1.00 25.00           C
ATOM     56  CA  ALA    56      32.393  13.973  11.819  1.00 25.00           C
ATOM     57  CA  ASP    57      32.575  17.018  14.134  1.00 25.00           C
ATOM     58  CA  ALA    58      29.677  15.635  16.221  1.00 25.00           C
ATOM     59  CA  LEU    59      31.443  12.246  16.472  1.00 25.00           C
ATOM     60  CA  LYS    60      34.669  13.981  17.589  1.00 25.00           C
ATOM     61  CA  GLN    61      32.725  15.943  20.242  1.00 25.00           C
ATOM     62  CA  HIS    62      31.115  12.702  21.494  1.00 25.00           C
ATOM     63  CA  ARG    63      34.560  11.041  21.697  1.00 25.00           C
ATOM     64  CA  HIS    64      35.915  14.035  23.665  1.00 25.00           C
ATOM     65  CA  ARG    65      32.942  13.831  26.069  1.00 25.00           C
ATOM     66  CA  ARG    66      33.561  10.084  26.558  1.00 25.00           C
ATOM     67  CA  ASP    67      37.261  10.765  27.274  1.00 25.00           C
ATOM     68  CA  ASP    68      36.298  13.451  29.828  1.00 25.00           C
ATOM     69  CA  VAL    69      33.875  11.013  31.515  1.00 25.00           C
ATOM     70  CA  ILE    70      36.621   8.349  31.667  1.00 25.00           C
ATOM     71  CA  VAL    71      39.032  10.887  33.218  1.00 25.00           C
ATOM     72  CA  MET    72      36.390  11.846  35.819  1.00 25.00           C
ATOM     73  CA  LEU    73      35.838   8.150  36.655  1.00 25.00           C
ATOM     74  CA  SER    74      39.614   7.651  37.055  1.00 25.00           C
ATOM     75  CA  ALA    75      39.796  10.696  39.371  1.00 25.00           C
ATOM     76  CA  ARG    76      36.414  11.555  40.901  1.00 25.00           C
ATOM     77  CA  GLY    77      37.645  15.017  41.771  1.00 25.00           C
ATOM     78  CA  VAL    78      38.931  15.632  38.191  1.00 25.00           C
ATOM     79  CA  THR    79      40.684  18.698  39.588  1.00 25.00           C
ATOM     80  CA  ALA    80      41.054  20.127  36.079  1.00 25.00           C
ATOM     81  CA  PRO    81      41.525  16.993  33.928  1.00 25.00           C
ATOM     82  CA  ILE    82      37.986  17.396  32.522  1.00 25.00           C
ATOM     83  CA  ALA    83      38.702  21.069  31.706  1.00 25.00           C
ATOM     84  CA  ALA    84      41.950  20.068  29.941  1.00 25.00           C
ATOM     85  CA  ALA    85      43.091  19.490  26.304  1.00 25.00           C
ATOM     86  CA  GLY    86      45.404  16.473  26.556  1.00 25.00           C
ATOM     87  CA  TYR    87      44.779  15.668  30.203  1.00 25.00           C
ATOM     88  CA  GLN    88      46.765  12.454  30.496  1.00 25.00           C
ATOM     89  CA  LEU    89      44.181  11.185  28.029  1.00 25.00           C
ATOM     90  CA  PRO    90      41.609  13.203  26.129  1.00 25.00           C
ATOM     91  CA  MET    91      39.264  16.134  26.804  1.00 25.00           C
ATOM     92  CA  GLN    92      36.598  18.635  27.754  1.00 25.00           C
ATOM     93  CA  VAL    93      32.755  18.542  27.503  1.00 25.00           C
ATOM     94  CA  SER    94      29.110  18.159  26.534  1.00 25.00           C
ATOM     95  CA  SER    95      26.210  20.109  28.131  1.00 25.00           C
ATOM     96  CA  ALA    96      24.813  22.965  30.290  1.00 25.00           C
ATOM     97  CA  ALA    97      26.549  26.355  30.696  1.00 25.00           C
ATOM     98  CA  ASP    98      29.445  24.676  32.558  1.00 25.00           C
ATOM     99  CA  ALA    99      29.760  22.071  29.769  1.00 25.00           C
ATOM    100  CA  ALA   100      29.811  24.856  27.141  1.00 25.00           C
ATOM    101  CA  ARG   101      32.534  26.695  29.106  1.00 25.00           C
ATOM    102  CA  LEU   102      34.594  23.474  29.315  1.00 25.00           C
ATOM    103  CA  ALA   103      34.211  22.954  25.540  1.00 25.00           C
ATOM    104  CA  VAL   104      35.341  26.558  24.905  1.00 25.00           C
ATOM    105  CA  ARG   105      38.388  26.027  27.165  1.00 25.00           C
ATOM    106  CA  MET   106      39.256  22.808  25.279  1.00 25.00           C
ATOM    107  CA  GLU   107      38.964  24.659  21.938  1.00 25.00           C
ATOM    108  CA  ASN   108      41.253  27.435  23.247  1.00 25.00           C
ATOM    109  CA  ASP   109      43.807  24.822  24.397  1.00 25.00           C
ATOM    110  CA  GLY   110      43.687  23.155  20.952  1.00 25.00           C
ATOM    111  CA  ALA   111      44.232  26.549  19.262  1.00 25.00           C
ATOM    112  CA  THR   112      47.219  27.239  21.558  1.00 25.00           C
ATOM    113  CA  ALA   113      48.693  23.807  20.713  1.00 25.00           C
ATOM    114  CA  TRP   114      48.250  24.510  16.975  1.00 25.00           C
ATOM    115  CA  ARG   115      49.987  27.899  17.382  1.00 25.00           C
ATOM    116  CA  ALA   116      52.882  26.221  19.243  1.00 25.00           C
ATOM    117  CA  VAL   117      53.197  23.615  16.453  1.00 25.00           C
ATOM    118  CA  VAL   118      53.248  26.400  13.825  1.00 25.00           C
ATOM    119  CA  GLU   119      55.971  28.240  15.791  1.00 25.00           C
ATOM    120  CA  HIS   120      58.031  25.017  16.000  1.00 25.00           C
ATOM    121  CA  ALA   121      57.648  24.498  12.225  1.00 25.00           C
ATOM    122  CA  GLU   122      54.577  22.413  11.561  1.00 25.00           C
ATOM    123  CA  THR   123      50.789  22.990  11.502  1.00 25.00           C
ATOM    124  CA  ALA   124      47.275  24.251  12.028  1.00 25.00           C
ATOM    125  CA  ASP   125      45.014  26.020  14.498  1.00 25.00           C
ATOM    126  CA  ASP   126      42.215  28.254  13.140  1.00 25.00           C
ATOM    127  CA  ARG   127      40.331  25.168  11.877  1.00 25.00           C
ATOM    128  CA  VAL   128      40.705  23.505  15.306  1.00 25.00           C
ATOM    129  CA  PHE   129      39.381  26.668  17.012  1.00 25.00           C
ATOM    130  CA  ALA   130      36.387  26.732  14.624  1.00 25.00           C
ATOM    131  CA  SER   131      35.673  23.046  15.381  1.00 25.00           C
ATOM    132  CA  THR   132      35.835  23.762  19.139  1.00 25.00           C
ATOM    133  CA  ALA   133      33.414  26.699  18.710  1.00 25.00           C
ATOM    134  CA  LEU   134      31.014  24.463  16.734  1.00 25.00           C
ATOM    135  CA  THR   135      31.189  21.803  19.483  1.00 25.00           C
ATOM    136  CA  GLU   136      30.450  24.462  22.138  1.00 25.00           C
ATOM    137  CA  SER   137      27.452  25.698  20.100  1.00 25.00           C
ATOM    138  CA  ALA   138      26.154  22.110  19.786  1.00 25.00           C
ATOM    139  CA  VAL   139      26.524  21.619  23.567  1.00 25.00           C
ATOM    140  CA  MET   140      24.615  24.879  24.201  1.00 25.00           C
ATOM    141  CA  ALA   141      21.830  23.737  21.833  1.00 25.00           C
ATOM    142  CA  THR   142      21.627  20.374  23.654  1.00 25.00           C
ATOM    143  CA  ARG   143      21.404  22.183  27.023  1.00 25.00           C
ATOM    144  CA  TRP   144      18.605  24.417  25.665  1.00 25.00           C
ATOM    145  CA  ASN   145      16.721  21.331  24.402  1.00 25.00           C
ATOM    146  CA  ARG   146      14.146  23.484  22.578  1.00 25.00           C
ATOM    147  CA  VAL   147      11.104  23.777  24.898  1.00 25.00           C
ATOM    148  CA  LEU   148      11.104  19.953  24.685  1.00 25.00           C
ATOM    149  CA  GLY   149       7.693  19.523  26.322  1.00 25.00           C
ATOM    150  CA  ALA   150       5.765  21.282  29.112  1.00 25.00           C
ATOM    151  CA  TRP   151       4.941  19.100  32.187  1.00 25.00           C
ATOM    152  CA  PRO   152       3.021  16.434  30.239  1.00 25.00           C
ATOM    153  CA  ILE   153       2.491  13.519  27.823  1.00 25.00           C
ATOM    154  CA  THR   154      -0.852  11.706  27.736  1.00 25.00           C
ATOM    155  CA  ALA   155      -4.480  12.826  27.962  1.00 25.00           C
ATOM    156  CA  ALA   156      -5.971  12.144  31.361  1.00 25.00           C
ATOM    157  CA  PHE   157      -4.613  11.155  34.726  1.00 25.00           C
ATOM    158  CA  PRO   158      -7.549   8.802  35.553  1.00 25.00           C
ATOM    159  CA  GLY   159      -9.223   5.440  35.346  1.00 25.00           C
ATOM    160  CA  GLY   160      -8.542   2.526  33.005  1.00 25.00           C
ATOM    161  CA  ASP   161      -7.905  -1.196  33.567  1.00 25.00           C
ATOM    162  CA  GLU   162      -5.568  -2.441  30.854  1.00 25.00           C
TER
END
