
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  125 (  125),  selected  125 , name T0285TS599_5
# Molecule2: number of CA atoms   99 (  800),  selected   99 , name T0285.pdb
# PARAMETERS: T0285TS599_5.T0285.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      S       7           -
LGA    Y       2      P       8           -
LGA    L       3      A       9           -
LGA    P       4      -       -           -
LGA    D       5      -       -           -
LGA    D       6      -       -           -
LGA    S       7      -       -           -
LGA    P       8      -       -           -
LGA    A       9      -       -           -
LGA    K      10      -       -           -
LGA    R      11      -       -           -
LGA    L      12      -       -           -
LGA    L      13      -       -           -
LGA    F      14      -       -           -
LGA    Q      15      -       -           -
LGA    M      16      -       -           -
LGA    V      17      -       -           -
LGA    G      18      -       -           -
LGA    N      19      -       -           -
LGA    A      20      -       -           -
LGA    I      21      -       -           -
LGA    N      22      -       -           -
LGA    R      23      -       -           -
LGA    N      24      -       -           -
LGA    T      25      -       -           -
LGA    Q      26      -       -           -
LGA    Q      27      -       -           -
LGA    L      28      -       -           -
LGA    T      29      -       -           -
LGA    Q      30      -       -           -
LGA    D      31      -       -           -
LGA    L      32      -       -           -
LGA    R      33      -       -           -
LGA    A      34      -       -           -
LGA    M      35      -       -           -
LGA    P      36      -       -           -
LGA    N      37      -       -           -
LGA    W      38      -       -           -
LGA    S      39      -       -           -
LGA    L      40      -       -           -
LGA    R      41      -       -           -
LGA    F      42      K      10           #
LGA    V      43      R      11           -
LGA    -       -      L      12           -
LGA    -       -      L      13           -
LGA    Y      44      F      14          4.083
LGA    -       -      Q      15           -
LGA    I      45      M      16          5.328
LGA    V      46      V      17          1.729
LGA    D      47      G      18          4.304
LGA    R      48      N      19          2.934
LGA    N      49      -       -           -
LGA    N      50      -       -           -
LGA    Q      51      -       -           -
LGA    D      52      -       -           -
LGA    L      53      -       -           -
LGA    L      54      -       -           -
LGA    K      55      -       -           -
LGA    R      56      -       -           -
LGA    P      57      -       -           -
LGA    L      58      -       -           -
LGA    P      59      -       -           -
LGA    P      60      -       -           -
LGA    G      61      -       -           -
LGA    I      62      -       -           -
LGA    M      63      -       -           -
LGA    V      64      A      20           #
LGA    L      65      I      21          3.837
LGA    A      66      N      22           #
LGA    P      67      R      23          4.671
LGA    R      68      N      24          3.460
LGA    -       -      T      25           -
LGA    -       -      Q      26           -
LGA    -       -      Q      27           -
LGA    L      69      L      28          1.919
LGA    -       -      T      29           -
LGA    T      70      Q      30           #
LGA    A      71      D      31          3.812
LGA    K      72      -       -           -
LGA    H      73      L      32          4.027
LGA    P      74      R      33          4.281
LGA    Y      75      A      34          2.384
LGA    D      76      M      35          2.365
LGA    K      77      -       -           -
LGA    V      78      -       -           -
LGA    Q      79      P      36           #
LGA    D      80      N      37          5.049
LGA    R      81      W      38           -
LGA    N      82      S      39           -
LGA    -       -      L      40           -
LGA    R      83      R      41          2.992
LGA    K      84      F      42          4.878
LGA    L      85      V      43           #
LGA    Y      86      Y      44           #
LGA    G      87      -       -           -
LGA    R      88      -       -           -
LGA    H      89      -       -           -
LGA    I      90      -       -           -
LGA    T      91      -       -           -
LGA    L      92      -       -           -
LGA    N      93      -       -           -
LGA    D      94      -       -           -
LGA    G      95      -       -           -
LGA    N      96      -       -           -
LGA    S      97      -       -           -
LGA    V      98      -       -           -
LGA    K      99      -       -           -
LGA    V     100      -       -           -
LGA    V     101      -       -           -
LGA    T     102      -       -           -
LGA    I     103      -       -           -
LGA    S     104      I      45          5.432
LGA    A     105      V      46           #
LGA    G     106      D      47          4.829
LGA    R     107      R      48          4.499
LGA    D     108      N      49           #
LGA    E     109      N      50          0.984
LGA    G     110      Q      51           #
LGA    -       -      D      52           -
LGA    -       -      L      53           -
LGA    -       -      L      54           -
LGA    -       -      K      55           -
LGA    -       -      R      56           -
LGA    -       -      P      57           -
LGA    P     111      L      58           #
LGA    D     112      P      59           -
LGA    -       -      P      60           -
LGA    -       -      G      61           -
LGA    -       -      I      62           -
LGA    R     113      M      63          1.200
LGA    D     114      V      64          1.319
LGA    I     115      L      65          1.961
LGA    I     116      A      66          2.016
LGA    W     117      P      67          2.114
LGA    E     118      R      68          2.164
LGA    M     119      L      69          2.569
LGA    F     120      T      70          3.560
LGA    L     121      -       -           -
LGA    E     122      -       -           -
LGA    N     123      -       -           -
LGA    L     124      A      71          0.770
LGA    E     125      K      72          3.046
LGA    -       -      H      73           -
LGA    -       -      P      74           -
LGA    -       -      Y      75           -
LGA    -       -      D      76           -
LGA    -       -      K      77           -
LGA    -       -      V      78           -
LGA    -       -      Q      79           -
LGA    -       -      D      80           -
LGA    -       -      R      81           -
LGA    -       -      N      82           -
LGA    -       -      R      83           -
LGA    -       -      K      84           -
LGA    -       -      L      85           -
LGA    -       -      Y      86           -
LGA    -       -      G      87           -
LGA    -       -      R      88           -
LGA    -       -      H      89           -
LGA    -       -      I      90           -
LGA    -       -      T      91           -
LGA    -       -      L      92           -
LGA    -       -      N      93           -
LGA    -       -      D      94           -
LGA    -       -      G      95           -
LGA    -       -      N      96           -
LGA    -       -      S      97           -
LGA    -       -      V      98           -
LGA    -       -      K      99           -
LGA    -       -      V     100           -
LGA    -       -      V     101           -
LGA    -       -      T     102           -
LGA    -       -      I     103           -
LGA    -       -      S     104           -
LGA    -       -      A     105           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  125   99    5.0     31    3.45    12.90     18.943     0.873

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.339557 * X  +  -0.929625 * Y  +  -0.143175 * Z  +  13.853855
  Y_new =  -0.044950 * X  +  -0.168083 * Y  +   0.984747 * Z  +  13.927359
  Z_new =  -0.939511 * X  +  -0.327942 * Y  +  -0.098860 * Z  +  79.533676 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.863589    1.278004  [ DEG:  -106.7758     73.2242 ]
  Theta =   1.221199    1.920393  [ DEG:    69.9696    110.0304 ]
  Phi   =  -0.131613    3.009980  [ DEG:    -7.5408    172.4592 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0285TS599_5                                  
REMARK     2: T0285.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0285TS599_5.T0285.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  125   99   5.0   31   3.45   12.90  18.943
REMARK  ---------------------------------------------------------- 
MOLECULE T0285TS599_5
PFRMAT TS                                                                       
TARGET T0285                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  ALA     1      16.612  27.383  67.204  1.00  0.00              
ATOM      2  CA  TYR     2      16.350  29.332  64.192  1.00  0.00              
ATOM      3  CA  LEU     3      17.185  27.092  60.735  1.00  0.00              
ATOM      4  CA  PRO     4      13.795  27.036  58.215  1.00  0.00              
ATOM      5  CA  ASP     5      15.440  28.360  55.039  1.00  0.00              
ATOM      6  CA  ASP     6      12.586  30.281  53.502  1.00  0.00              
ATOM      7  CA  SER     7      11.147  32.046  56.481  1.00  0.00              
ATOM      8  CA  PRO     8       7.751  31.375  57.942  1.00  0.00              
ATOM      9  CA  ALA     9       7.995  27.758  58.913  1.00  0.00              
ATOM     10  CA  LYS    10      11.084  27.968  61.194  1.00  0.00              
ATOM     11  CA  ARG    11       9.790  31.124  63.005  1.00  0.00              
ATOM     12  CA  LEU    12       6.335  29.641  63.660  1.00  0.00              
ATOM     13  CA  LEU    13       7.734  26.287  64.872  1.00  0.00              
ATOM     14  CA  PHE    14      10.254  27.840  67.299  1.00  0.00              
ATOM     15  CA  GLN    15       7.544  30.083  68.754  1.00  0.00              
ATOM     16  CA  MET    16       5.166  27.113  69.207  1.00  0.00              
ATOM     17  CA  VAL    17       7.882  24.960  70.886  1.00  0.00              
ATOM     18  CA  GLY    18       8.938  27.827  73.148  1.00  0.00              
ATOM     19  CA  ASN    19       5.265  28.332  74.136  1.00  0.00              
ATOM     20  CA  ALA    20       4.816  24.612  74.882  1.00  0.00              
ATOM     21  CA  ILE    21       7.911  24.314  77.089  1.00  0.00              
ATOM     22  CA  ASN    22       6.886  27.389  79.099  1.00  0.00              
ATOM     23  CA  ARG    23       3.387  25.971  79.576  1.00  0.00              
ATOM     24  CA  ASN    24       4.712  22.566  80.682  1.00  0.00              
ATOM     25  CA  THR    25       7.081  24.206  83.212  1.00  0.00              
ATOM     26  CA  GLN    26       4.200  26.241  84.606  1.00  0.00              
ATOM     27  CA  GLN    27       2.050  23.077  84.972  1.00  0.00              
ATOM     28  CA  LEU    28       4.884  21.299  86.728  1.00  0.00              
ATOM     29  CA  THR    29       5.351  24.234  89.120  1.00  0.00              
ATOM     30  CA  GLN    30       1.607  24.252  89.909  1.00  0.00              
ATOM     31  CA  ASP    31       1.636  20.506  90.485  1.00  0.00              
ATOM     32  CA  LEU    32       4.631  20.757  92.867  1.00  0.00              
ATOM     33  CA  ARG    33       3.006  23.521  94.835  1.00  0.00              
ATOM     34  CA  ALA    34      -0.235  21.486  95.180  1.00  0.00              
ATOM     35  CA  MET    35       1.323  18.201  96.305  1.00  0.00              
ATOM     36  CA  PRO    36       3.565  19.456  99.144  1.00  0.00              
ATOM     37  CA  ASN    37       6.643  17.278  98.571  1.00  0.00              
ATOM     38  CA  TRP    38       6.265  17.482  94.831  1.00  0.00              
ATOM     39  CA  SER    39       7.348  14.938  92.514  1.00  0.00              
ATOM     40  CA  LEU    40       8.328  15.951  89.046  1.00  0.00              
ATOM     41  CA  ARG    41       9.183  13.385  86.479  1.00  0.00              
ATOM     42  CA  PHE    42      11.479  14.369  83.647  1.00  0.00              
ATOM     43  CA  VAL    43      12.292  12.060  80.731  1.00  0.00              
ATOM     44  CA  TYR    44      15.476  12.655  78.798  1.00  0.00              
ATOM     45  CA  ILE    45      16.166  10.756  75.747  1.00  0.00              
ATOM     46  CA  VAL    46      19.288  11.739  73.528  1.00  0.00              
ATOM     47  CA  ASP    47      20.078   9.514  70.573  1.00  0.00              
ATOM     48  CA  ARG    48      23.695   9.366  69.600  1.00  0.00              
ATOM     49  CA  ASN    49      23.421  11.314  66.397  1.00  0.00              
ATOM     50  CA  ASN    50      20.587  13.719  67.354  1.00  0.00              
ATOM     51  CA  GLN    51      21.297  14.862  70.857  1.00  0.00              
ATOM     52  CA  ASP    52      21.098  18.564  70.204  1.00  0.00              
ATOM     53  CA  LEU    53      17.811  18.522  68.393  1.00  0.00              
ATOM     54  CA  LEU    54      16.163  16.494  71.158  1.00  0.00              
ATOM     55  CA  LYS    55      17.539  18.816  73.820  1.00  0.00              
ATOM     56  CA  ARG    56      16.547  21.948  72.011  1.00  0.00              
ATOM     57  CA  PRO    57      12.883  21.326  71.363  1.00  0.00              
ATOM     58  CA  LEU    58      11.877  19.271  74.378  1.00  0.00              
ATOM     59  CA  PRO    59       9.080  16.806  73.431  1.00  0.00              
ATOM     60  CA  PRO    60       6.501  17.039  76.148  1.00  0.00              
ATOM     61  CA  GLY    61       6.945  13.668  77.747  1.00  0.00              
ATOM     62  CA  ILE    62      10.604  12.949  76.809  1.00  0.00              
ATOM     63  CA  MET    63      11.602   9.542  75.522  1.00  0.00              
ATOM     64  CA  VAL    64      15.266   9.051  74.953  1.00  0.00              
ATOM     65  CA  LEU    65      16.361   6.414  72.315  1.00  0.00              
ATOM     66  CA  ALA    66      19.933   5.268  72.329  1.00  0.00              
ATOM     67  CA  PRO    67      20.504   1.901  70.534  1.00  0.00              
ATOM     68  CA  ARG    68      23.676   3.092  68.789  1.00  0.00              
ATOM     69  CA  LEU    69      25.569   4.463  71.764  1.00  0.00              
ATOM     70  CA  THR    70      27.811   7.407  70.760  1.00  0.00              
ATOM     71  CA  ALA    71      31.473   7.450  71.825  1.00  0.00              
ATOM     72  CA  LYS    72      31.085   9.642  74.922  1.00  0.00              
ATOM     73  CA  HIS    73      27.628   8.480  76.094  1.00  0.00              
ATOM     74  CA  PRO    74      27.537   4.728  75.727  1.00  0.00              
ATOM     75  CA  TYR    75      30.957   4.089  77.275  1.00  0.00              
ATOM     76  CA  ASP    76      30.211   6.287  80.240  1.00  0.00              
ATOM     77  CA  LYS    77      26.908   4.506  80.911  1.00  0.00              
ATOM     78  CA  VAL    78      28.350   0.961  80.575  1.00  0.00              
ATOM     79  CA  GLN    79      31.374   1.711  82.738  1.00  0.00              
ATOM     80  CA  ASP    80      29.322   3.258  85.549  1.00  0.00              
ATOM     81  CA  ARG    81      26.744   0.425  85.506  1.00  0.00              
ATOM     82  CA  ASN    82      26.017   0.670  89.261  1.00  0.00              
ATOM     83  CA  ARG    83      25.717   4.473  89.013  1.00  0.00              
ATOM     84  CA  LYS    84      23.268   4.421  86.075  1.00  0.00              
ATOM     85  CA  LEU    85      20.660   1.975  87.404  1.00  0.00              
ATOM     86  CA  TYR    86      20.213   2.845  91.116  1.00  0.00              
ATOM     87  CA  GLY    87      21.528   6.380  90.847  1.00  0.00              
ATOM     88  CA  ARG    88      19.339   7.424  87.848  1.00  0.00              
ATOM     89  CA  HIS    89      18.982  11.077  88.403  1.00  0.00              
ATOM     90  CA  ILE    90      17.226  12.298  91.507  1.00  0.00              
ATOM     91  CA  THR    91      17.138  15.954  92.246  1.00  0.00              
ATOM     92  CA  LEU    92      16.015  17.168  95.599  1.00  0.00              
ATOM     93  CA  ASN    93      15.144  20.746  95.990  1.00  0.00              
ATOM     94  CA  ASP    94      15.364  22.309  99.440  1.00  0.00              
ATOM     95  CA  GLY    95      11.620  23.116  99.899  1.00  0.00              
ATOM     96  CA  ASN    96      10.250  19.663  99.404  1.00  0.00              
ATOM     97  CA  SER    97      10.007  19.299  95.628  1.00  0.00              
ATOM     98  CA  VAL    98      11.374  16.140  94.127  1.00  0.00              
ATOM     99  CA  LYS    99      12.597  16.069  90.651  1.00  0.00              
ATOM    100  CA  VAL   100      13.123  12.755  89.036  1.00  0.00              
ATOM    101  CA  VAL   101      15.107  12.452  85.913  1.00  0.00              
ATOM    102  CA  THR   102      14.639   9.436  83.782  1.00  0.00              
ATOM    103  CA  ILE   103      17.113   8.561  81.113  1.00  0.00              
ATOM    104  CA  SER   104      15.841   6.197  78.445  1.00  0.00              
ATOM    105  CA  ALA   105      18.088   4.052  76.328  1.00  0.00              
ATOM    106  CA  GLY   106      16.141   1.175  74.911  1.00  0.00              
ATOM    107  CA  ARG   107      16.732  -2.180  76.512  1.00  0.00              
ATOM    108  CA  ASP   108      14.424  -2.071  79.467  1.00  0.00              
ATOM    109  CA  GLU   109      15.543  -4.823  81.765  1.00  0.00              
ATOM    110  CA  GLY   110      12.498  -4.647  84.109  1.00  0.00              
ATOM    111  CA  PRO   111      14.144  -4.425  87.488  1.00  0.00              
ATOM    112  CA  ASP   112      11.749  -2.208  89.363  1.00  0.00              
ATOM    113  CA  ARG   113      13.596   1.075  89.370  1.00  0.00              
ATOM    114  CA  ASP   114      10.590   3.423  89.760  1.00  0.00              
ATOM    115  CA  ILE   115      11.718   6.364  87.578  1.00  0.00              
ATOM    116  CA  ILE   116      12.507   3.790  84.882  1.00  0.00              
ATOM    117  CA  TRP   117       9.075   2.163  85.039  1.00  0.00              
ATOM    118  CA  GLU   118       7.344   5.540  84.796  1.00  0.00              
ATOM    119  CA  MET   119       9.450   6.566  81.858  1.00  0.00              
ATOM    120  CA  PHE   120       8.825   3.392  79.900  1.00  0.00              
ATOM    121  CA  LEU   121       5.107   3.737  80.264  1.00  0.00              
ATOM    122  CA  GLU   122       5.009   7.452  79.293  1.00  0.00              
ATOM    123  CA  ASN   123       7.411   6.941  76.223  1.00  0.00              
ATOM    124  CA  LEU   124       5.465   3.875  75.127  1.00  0.00              
ATOM    125  CA  GLU   125       1.459   2.909  75.391  1.00  0.00              
TER                                                                             
 
END
