
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms    4 (   31),  selected    4 , name T0298TS022_1_2-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS022_1_2-D1.T0298_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

# ERROR! The number of residues in molecule is less then 5


Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.000000 * X  +   0.000000 * Y  +   0.000000 * Z  +   0.000000
  Y_new =   0.000000 * X  +   0.000000 * Y  +   0.000000 * Z  +   0.000000
  Z_new =   0.000000 * X  +   0.000000 * Y  +   0.000000 * Z  +   0.000000 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.000000   -3.141593  [ DEG:     0.0000   -180.0000 ]
  Theta =  -0.000000    3.141593  [ DEG:    -0.0000    180.0000 ]
  Phi   =   0.000000   -3.141593  [ DEG:     0.0000   -180.0000 ]
 
# NOTE! The number N = 0 of calculated residues is smaller then cutoff lN:n = 1 

# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: no coordinates  
REMARK     1: T0298TS022_1_2-D1                             
REMARK     2: T0298_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0298TS022_1_2-D1.T0298_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:    4  148   5.0    0 999.99    0.00   0.000
REMARK  ---------------------------------------------------------- 
