
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  102 (  102),  selected  102 , name T0300TS393_1
# Molecule2: number of CA atoms   89 (  695),  selected   89 , name T0300
# PARAMETERS: T0300TS393_1.T0300  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       7          2.017
LGA    A       2      K       8           #
LGA    S       3      T       9           -
LGA    -       -      Y      10           -
LGA    -       -      E      11           -
LGA    -       -      E      12           -
LGA    -       -      M      13           -
LGA    -       -      V      14           -
LGA    -       -      K      15           -
LGA    -       -      E      16           -
LGA    K       4      V      17           #
LGA    K       5      E      18           -
LGA    P       6      R      19           -
LGA    D       7      L      20           -
LGA    -       -      K      21           -
LGA    -       -      L      22           -
LGA    -       -      E      23           -
LGA    -       -      N      24           -
LGA    -       -      K      25           -
LGA    -       -      T      26           -
LGA    -       -      L      27           -
LGA    -       -      K      28           -
LGA    -       -      Q      29           -
LGA    -       -      K      30           -
LGA    -       -      V      31           -
LGA    -       -      S      39           -
LGA    -       -      D      40           -
LGA    -       -      D      41           -
LGA    -       -      S      42           -
LGA    -       -      I      43           -
LGA    -       -      L      44           -
LGA    -       -      T      45           -
LGA    -       -      A      46           -
LGA    K       8      A      47           #
LGA    T       9      K      48          2.242
LGA    Y      10      R      49          1.310
LGA    -       -      E      50           -
LGA    E      11      S      51          1.284
LGA    E      12      I      52          1.576
LGA    M      13      I      53          2.656
LGA    V      14      V      54          2.079
LGA    K      15      S      55          0.388
LGA    E      16      S      56          0.814
LGA    V      17      S      57          1.006
LGA    E      18      R      58          0.880
LGA    R      19      A      59          0.646
LGA    L      20      L      60          0.420
LGA    K      21      G      61          0.697
LGA    L      22      A      62          1.520
LGA    E      23      V      63          1.487
LGA    N      24      A      64          0.719
LGA    K      25      M      65          0.935
LGA    T      26      R      66          1.676
LGA    L      27      K      67          1.704
LGA    K      28      I      68          1.611
LGA    Q      29      E      69          1.945
LGA    K      30      A      70          2.484
LGA    V      31      K      71          2.735
LGA    K      32      V      72          3.375
LGA    S      33      R      73          3.882
LGA    S      34      S      74          4.538
LGA    G      35      R      75           #
LGA    A      36      A      76           #
LGA    V      37      A      77          4.226
LGA    S      38      K      78          1.617
LGA    S      39      A      79          6.321
LGA    D      40      V      80           #
LGA    -       -      T      81           -
LGA    -       -      E      82           -
LGA    -       -      Q      83           -
LGA    D      41      E      84          3.803
LGA    S      42      L      85           #
LGA    -       -      T      86           -
LGA    I      43      S      87          4.901
LGA    L      44      L      88          1.912
LGA    T      45      L      89          2.451
LGA    A      46      Q      90          2.753
LGA    A      47      -       -           -
LGA    K      48      -       -           -
LGA    R      49      S      91          4.133
LGA    E      50      L      92          3.292
LGA    S      51      -       -           -
LGA    I      52      T      93          4.474
LGA    I      53      L      94          2.511
LGA    V      54      -       -           -
LGA    S      55      -       -           -
LGA    S      56      R      95          3.219
LGA    S      57      V      96          2.275
LGA    R      58      -       -           -
LGA    A      59      -       -           -
LGA    L      60      D      97          1.709
LGA    G      61      V      98          1.642
LGA    A      62      -       -           -
LGA    V      63      -       -           -
LGA    A      64      S      99          2.477
LGA    M      65      M     100          2.647
LGA    R      66      -       -           -
LGA    K      67      -       -           -
LGA    I      68      E     101          2.894
LGA    E      69      -       -           -
LGA    A      70      -       -           -
LGA    K      71      -       -           -
LGA    V      72      -       -           -
LGA    R      73      -       -           -
LGA    S      74      -       -           -
LGA    R      75      -       -           -
LGA    A      76      -       -           -
LGA    A      77      -       -           -
LGA    K      78      -       -           -
LGA    A      79      -       -           -
LGA    V      80      -       -           -
LGA    T      81      -       -           -
LGA    E      82      -       -           -
LGA    Q      83      -       -           -
LGA    E      84      -       -           -
LGA    L      85      -       -           -
LGA    T      86      E     102           #
LGA    S      87      -       -           -
LGA    L      88      -       -           -
LGA    L      89      -       -           -
LGA    Q      90      -       -           -
LGA    S      91      -       -           -
LGA    L      92      -       -           -
LGA    T      93      -       -           -
LGA    L      94      -       -           -
LGA    R      95      -       -           -
LGA    V      96      -       -           -
LGA    D      97      -       -           -
LGA    V      98      -       -           -
LGA    S      99      -       -           -
LGA    M     100      -       -           -
LGA    E     101      -       -           -
LGA    E     102      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  102   89    5.0     46    2.64    10.87     37.443     1.676

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.931375 * X  +  -0.128942 * Y  +  -0.340461 * Z  +  32.130280
  Y_new =  -0.133802 * X  +  -0.990965 * Y  +   0.009273 * Z  + -15.944186
  Z_new =  -0.338580 * X  +   0.036918 * Y  +  -0.940213 * Z  +  -0.191838 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.102347   -0.039246  [ DEG:   177.7514     -2.2486 ]
  Theta =   0.345408    2.796185  [ DEG:    19.7904    160.2096 ]
  Phi   =  -0.142685    2.998908  [ DEG:    -8.1752    171.8248 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0300TS393_1                                  
REMARK     2: T0300                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0300TS393_1.T0300 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  102   89   5.0   46   2.64   10.87  37.443
REMARK  ---------------------------------------------------------- 
MOLECULE T0300TS393_1
PFRMAT TS
TARGET T0300
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      34.372   2.121 -10.878  1.00 25.00           C
ATOM      2  CA  ALA     2      36.654   2.659 -13.902  1.00 25.00           C
ATOM      3  CA  SER     3      39.424   2.685 -16.563  1.00 25.00           C
ATOM      4  CA  LYS     4      40.615  -0.420 -18.438  1.00 25.00           C
ATOM      5  CA  LYS     5      43.615  -2.544 -19.402  1.00 25.00           C
ATOM      6  CA  PRO     6      47.229  -3.527 -19.107  1.00 25.00           C
ATOM      7  CA  ASP     7      49.310  -6.667 -19.055  1.00 25.00           C
ATOM      8  CA  LYS     8      49.810  -9.884 -17.084  1.00 25.00           C
ATOM      9  CA  THR     9      50.267 -13.409 -15.727  1.00 25.00           C
ATOM     10  CA  TYR    10      49.749 -14.914 -12.325  1.00 25.00           C
ATOM     11  CA  GLU    11      49.154 -11.267 -11.319  1.00 25.00           C
ATOM     12  CA  GLU    12      45.461 -11.577 -12.285  1.00 25.00           C
ATOM     13  CA  MET    13      45.162 -14.781 -10.209  1.00 25.00           C
ATOM     14  CA  VAL    14      46.781 -13.023  -7.217  1.00 25.00           C
ATOM     15  CA  LYS    15      44.341 -10.095  -7.585  1.00 25.00           C
ATOM     16  CA  GLU    16      41.392 -12.535  -7.702  1.00 25.00           C
ATOM     17  CA  VAL    17      42.679 -14.281  -4.546  1.00 25.00           C
ATOM     18  CA  GLU    18      43.005 -10.899  -2.778  1.00 25.00           C
ATOM     19  CA  ARG    19      39.427  -9.993  -3.801  1.00 25.00           C
ATOM     20  CA  LEU    20      38.168 -13.354  -2.466  1.00 25.00           C
ATOM     21  CA  LYS    21      40.005 -12.758   0.840  1.00 25.00           C
ATOM     22  CA  LEU    22      38.450  -9.269   1.105  1.00 25.00           C
ATOM     23  CA  GLU    23      34.975 -10.741   0.453  1.00 25.00           C
ATOM     24  CA  ASN    24      35.561 -13.385   3.162  1.00 25.00           C
ATOM     25  CA  LYS    25      36.656 -10.658   5.620  1.00 25.00           C
ATOM     26  CA  THR    26      33.513  -8.627   4.804  1.00 25.00           C
ATOM     27  CA  LEU    27      31.333 -11.724   5.377  1.00 25.00           C
ATOM     28  CA  LYS    28      33.056 -12.345   8.741  1.00 25.00           C
ATOM     29  CA  GLN    29      32.461  -8.697   9.747  1.00 25.00           C
ATOM     30  CA  LYS    30      28.768  -9.008   8.781  1.00 25.00           C
ATOM     31  CA  VAL    31      28.468 -12.212  10.857  1.00 25.00           C
ATOM     32  CA  LYS    32      30.089 -10.454  13.849  1.00 25.00           C
ATOM     33  CA  SER    33      28.646  -6.966  14.587  1.00 25.00           C
ATOM     34  CA  SER    34      25.290  -8.810  14.519  1.00 25.00           C
ATOM     35  CA  GLY    35      22.045 -10.661  15.439  1.00 25.00           C
ATOM     36  CA  ALA    36      22.561 -10.118  19.140  1.00 25.00           C
ATOM     37  CA  VAL    37      20.954 -13.601  19.562  1.00 25.00           C
ATOM     38  CA  SER    38      22.427 -13.677  23.103  1.00 25.00           C
ATOM     39  CA  SER    39      22.621 -17.392  22.647  1.00 25.00           C
ATOM     40  CA  ASP    40      24.465 -17.634  26.014  1.00 25.00           C
ATOM     41  CA  ASP    41      27.161 -15.310  27.353  1.00 25.00           C
ATOM     42  CA  SER    42      30.041 -17.714  27.987  1.00 25.00           C
ATOM     43  CA  ILE    43      31.059 -20.259  25.433  1.00 25.00           C
ATOM     44  CA  LEU    44      31.965 -19.200  21.914  1.00 25.00           C
ATOM     45  CA  THR    45      35.400 -17.860  20.876  1.00 25.00           C
ATOM     46  CA  ALA    46      38.070 -20.312  22.086  1.00 25.00           C
ATOM     47  CA  ALA    47      40.408 -18.028  20.092  1.00 25.00           C
ATOM     48  CA  LYS    48      41.793 -21.055  18.199  1.00 25.00           C
ATOM     49  CA  ARG    49      38.231 -22.221  17.409  1.00 25.00           C
ATOM     50  CA  GLU    50      37.341 -18.720  16.135  1.00 25.00           C
ATOM     51  CA  SER    51      40.470 -18.702  13.926  1.00 25.00           C
ATOM     52  CA  ILE    52      39.531 -22.141  12.526  1.00 25.00           C
ATOM     53  CA  ILE    53      35.987 -20.897  11.781  1.00 25.00           C
ATOM     54  CA  VAL    54      37.415 -17.822   9.999  1.00 25.00           C
ATOM     55  CA  SER    55      39.721 -20.067   7.922  1.00 25.00           C
ATOM     56  CA  SER    56      36.750 -22.294   6.984  1.00 25.00           C
ATOM     57  CA  SER    57      34.734 -19.209   5.945  1.00 25.00           C
ATOM     58  CA  ARG    58      37.662 -17.985   3.803  1.00 25.00           C
ATOM     59  CA  ALA    59      37.920 -21.428   2.145  1.00 25.00           C
ATOM     60  CA  LEU    60      34.159 -21.387   1.421  1.00 25.00           C
ATOM     61  CA  GLY    61      34.466 -17.891  -0.110  1.00 25.00           C
ATOM     62  CA  ALA    62      37.379 -19.078  -2.297  1.00 25.00           C
ATOM     63  CA  VAL    63      35.318 -22.094  -3.447  1.00 25.00           C
ATOM     64  CA  ALA    64      32.379 -19.793  -4.302  1.00 25.00           C
ATOM     65  CA  MET    65      34.718 -17.507  -6.296  1.00 25.00           C
ATOM     66  CA  ARG    66      36.103 -20.535  -8.189  1.00 25.00           C
ATOM     67  CA  LYS    67      32.541 -21.701  -8.979  1.00 25.00           C
ATOM     68  CA  ILE    68      31.651 -18.200 -10.253  1.00 25.00           C
ATOM     69  CA  GLU    69      34.779 -18.183 -12.462  1.00 25.00           C
ATOM     70  CA  ALA    70      33.841 -21.622 -13.862  1.00 25.00           C
ATOM     71  CA  LYS    71      30.296 -20.377 -14.607  1.00 25.00           C
ATOM     72  CA  VAL    72      31.724 -17.303 -16.390  1.00 25.00           C
ATOM     73  CA  ARG    73      34.030 -19.547 -18.467  1.00 25.00           C
ATOM     74  CA  SER    74      31.060 -21.774 -19.404  1.00 25.00           C
ATOM     75  CA  ARG    75      29.043 -18.688 -20.443  1.00 25.00           C
ATOM     76  CA  ALA    76      31.972 -17.465 -22.586  1.00 25.00           C
ATOM     77  CA  ALA    77      30.984 -13.849 -21.662  1.00 25.00           C
ATOM     78  CA  LYS    78      33.257 -12.876 -18.759  1.00 25.00           C
ATOM     79  CA  ALA    79      32.335 -12.118 -15.120  1.00 25.00           C
ATOM     80  CA  VAL    80      28.841 -10.992 -16.214  1.00 25.00           C
ATOM     81  CA  THR    81      25.202 -11.881 -16.886  1.00 25.00           C
ATOM     82  CA  GLU    82      24.753 -11.912 -13.129  1.00 25.00           C
ATOM     83  CA  GLN    83      21.207 -13.327 -12.829  1.00 25.00           C
ATOM     84  CA  GLU    84      22.618 -16.669 -11.603  1.00 25.00           C
ATOM     85  CA  LEU    85      24.764 -14.841  -9.011  1.00 25.00           C
ATOM     86  CA  THR    86      21.698 -12.880  -7.819  1.00 25.00           C
ATOM     87  CA  SER    87      19.706 -16.136  -7.507  1.00 25.00           C
ATOM     88  CA  LEU    88      22.554 -17.714  -5.489  1.00 25.00           C
ATOM     89  CA  LEU    89      22.647 -14.657  -3.184  1.00 25.00           C
ATOM     90  CA  GLN    90      18.856 -14.888  -2.684  1.00 25.00           C
ATOM     91  CA  SER    91      16.997 -18.137  -3.439  1.00 25.00           C
ATOM     92  CA  LEU    92      19.063 -21.227  -4.173  1.00 25.00           C
ATOM     93  CA  THR    93      16.825 -23.022  -6.698  1.00 25.00           C
ATOM     94  CA  LEU    94      18.554 -26.235  -5.468  1.00 25.00           C
ATOM     95  CA  ARG    95      16.948 -29.301  -3.805  1.00 25.00           C
ATOM     96  CA  VAL    96      17.605 -30.059  -0.126  1.00 25.00           C
ATOM     97  CA  ASP    97      18.429 -32.333   2.861  1.00 25.00           C
ATOM     98  CA  VAL    98      17.629 -30.705   6.205  1.00 25.00           C
ATOM     99  CA  SER    99      18.234 -31.351   9.911  1.00 25.00           C
ATOM    100  CA  MET   100      15.441 -32.197  12.308  1.00 25.00           C
ATOM    101  CA  GLU   101      12.408 -30.813  14.052  1.00 25.00           C
ATOM    102  CA  GLU   102      13.653 -27.377  12.897  1.00 25.00           C
TER
END
