
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  133 , name T0307TS599_2
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS599_2.T0307.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    G       2      G       2           -
LGA    L       3      L       3           -
LGA    G       4      G       4           -
LGA    R       5      R       5           -
LGA    Q       6      Q       6           -
LGA    -       -      S       7           -
LGA    -       -      L       8           -
LGA    -       -      N       9           -
LGA    -       -      I      10           -
LGA    -       -      M      11           -
LGA    -       -      T      12           -
LGA    -       -      F      13           -
LGA    -       -      S      14           -
LGA    -       -      G      15           -
LGA    -       -      Q      16           -
LGA    -       -      E      17           -
LGA    -       -      L      18           -
LGA    -       -      T      19           -
LGA    S       7      A      20          5.146
LGA    -       -      I      21           -
LGA    -       -      I      22           -
LGA    L       8      K      23          4.875
LGA    N       9      M      24          3.491
LGA    I      10      A      25          3.024
LGA    M      11      K      26          2.270
LGA    T      12      S      27           -
LGA    F      13      M      28           -
LGA    -       -      V      29           -
LGA    -       -      M      30           -
LGA    -       -      A      31           -
LGA    -       -      D      32           -
LGA    -       -      G      33           -
LGA    -       -      K      34           -
LGA    -       -      I      35           -
LGA    S      14      K      36          1.918
LGA    G      15      P      37          1.480
LGA    Q      16      A      38          0.490
LGA    E      17      E      39          0.467
LGA    L      18      I      40          0.315
LGA    T      19      A      41          0.222
LGA    A      20      V      42          0.381
LGA    I      21      M      43          0.242
LGA    I      22      T      44          0.518
LGA    K      23      R      45          0.793
LGA    M      24      E      46          0.891
LGA    A      25      F      47          0.597
LGA    K      26      M      48          0.866
LGA    S      27      R      49          1.359
LGA    M      28      F      50          1.255
LGA    V      29      G      51          2.630
LGA    M      30      I      52          4.960
LGA    A      31      L      53           -
LGA    D      32      Q      54           -
LGA    -       -      D      55           -
LGA    -       -      Q      56           -
LGA    -       -      V      57           -
LGA    -       -      D      58           -
LGA    G      33      L      59          5.181
LGA    K      34      -       -           -
LGA    I      35      L      60          2.482
LGA    K      36      L      61          3.392
LGA    P      37      -       -           -
LGA    A      38      -       -           -
LGA    E      39      K      62           #
LGA    I      40      A      63           -
LGA    A      41      S      64          5.204
LGA    V      42      D      65           -
LGA    -       -      S      66           -
LGA    -       -      I      67           -
LGA    -       -      E      68           -
LGA    -       -      A      69           -
LGA    -       -      S      70           -
LGA    -       -      Q      71           -
LGA    M      43      A      72          3.853
LGA    -       -      V      73           -
LGA    -       -      A      74           -
LGA    -       -      L      75           -
LGA    T      44      I      76          2.627
LGA    R      45      A      77           #
LGA    E      46      R      78           -
LGA    F      47      -       -           -
LGA    M      48      -       -           -
LGA    R      49      M      79           #
LGA    F      50      D      80           #
LGA    G      51      E      81           -
LGA    I      52      -       -           -
LGA    L      53      E      82           #
LGA    Q      54      R      83          2.329
LGA    -       -      K      84           -
LGA    D      55      K      85          3.637
LGA    Q      56      Y      86          2.458
LGA    V      57      V      87          2.679
LGA    D      58      A      88          2.633
LGA    L      59      S      89          1.061
LGA    L      60      Y      90          0.588
LGA    L      61      L      91          1.490
LGA    K      62      G      92          3.154
LGA    A      63      V      93          3.396
LGA    S      64      I      94          2.725
LGA    D      65      M      95           #
LGA    S      66      -       -           -
LGA    I      67      -       -           -
LGA    E      68      A      96           #
LGA    -       -      S      97           -
LGA    -       -      D      98           -
LGA    -       -      G      99           -
LGA    -       -      D     100           -
LGA    -       -      I     101           -
LGA    -       -      D     102           -
LGA    -       -      D     103           -
LGA    A      69      N     104          3.687
LGA    S      70      E     105          3.478
LGA    Q      71      L     106           -
LGA    A      72      A     107           -
LGA    V      73      -       -           -
LGA    A      74      -       -           -
LGA    L      75      -       -           -
LGA    I      76      -       -           -
LGA    A      77      -       -           -
LGA    R      78      -       -           -
LGA    M      79      -       -           -
LGA    D      80      -       -           -
LGA    E      81      -       -           -
LGA    E      82      -       -           -
LGA    R      83      -       -           -
LGA    K      84      -       -           -
LGA    K      85      -       -           -
LGA    Y      86      -       -           -
LGA    V      87      -       -           -
LGA    A      88      -       -           -
LGA    S      89      -       -           -
LGA    Y      90      -       -           -
LGA    L      91      -       -           -
LGA    G      92      -       -           -
LGA    V      93      -       -           -
LGA    I      94      -       -           -
LGA    M      95      -       -           -
LGA    A      96      -       -           -
LGA    S      97      -       -           -
LGA    D      98      -       -           -
LGA    G      99      -       -           -
LGA    D     100      -       -           -
LGA    I     101      -       -           -
LGA    D     102      -       -           -
LGA    D     103      -       -           -
LGA    N     104      -       -           -
LGA    E     105      -       -           -
LGA    L     106      -       -           -
LGA    A     107      -       -           -
LGA    L     108      -       -           -
LGA    W     109      -       -           -
LGA    T     110      -       -           -
LGA    L     111      -       -           -
LGA    I     112      -       -           -
LGA    S     113      -       -           -
LGA    T     114      -       -           -
LGA    L     115      -       -           -
LGA    C     116      -       -           -
LGA    G     117      L     108           #
LGA    L     118      W     109           -
LGA    P     119      T     110           -
LGA    T     120      L     111           -
LGA    M     121      I     112           -
LGA    T     122      S     113           -
LGA    V     123      T     114           -
LGA    M     124      L     115           -
LGA    E     125      C     116           -
LGA    A     126      G     117           -
LGA    I     127      L     118           -
LGA    N     128      P     119           -
LGA    N     129      T     120           -
LGA    M     130      M     121           -
LGA    K     131      T     122           -
LGA    N     132      V     123           -
LGA    L     133      M     124           -
LGA    -       -      E     125           -
LGA    -       -      A     126           -
LGA    -       -      I     127           -
LGA    -       -      N     128           -
LGA    -       -      N     129           -
LGA    -       -      M     130           -
LGA    -       -      K     131           -
LGA    -       -      N     132           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  133  132    5.0     41    2.76     7.32     21.567     1.435

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.781595 * X  +  -0.367484 * Y  +  -0.504049 * Z  +  29.100365
  Y_new =  -0.513714 * X  +   0.837571 * Y  +   0.185939 * Z  +   9.246643
  Z_new =   0.353847 * X  +   0.404265 * Y  +  -0.843423 * Z  +  21.380421 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.694629   -0.446963  [ DEG:   154.3909    -25.6091 ]
  Theta =  -0.361681   -2.779912  [ DEG:   -20.7228   -159.2772 ]
  Phi   =  -2.560128    0.581464  [ DEG:  -146.6846     33.3154 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_2                                  
REMARK     2: T0307.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_2.T0307.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  133  132   5.0   41   2.76    7.32  21.567
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_2
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      31.893   4.441  29.107  1.00  0.00              
ATOM      2  CA  GLY     2      33.297   1.589  30.771  1.00  0.00              
ATOM      3  CA  LEU     3      29.773   2.215  31.254  1.00  0.00              
ATOM      4  CA  GLY     4      27.808   0.372  33.950  1.00  0.00              
ATOM      5  CA  ARG     5      24.077   0.136  33.217  1.00  0.00              
ATOM      6  CA  GLN     6      23.062   2.488  36.053  1.00  0.00              
ATOM      7  CA  SER     7      25.662   5.031  34.851  1.00  0.00              
ATOM      8  CA  LEU     8      25.641   5.242  31.072  1.00  0.00              
ATOM      9  CA  ASN     9      27.557   8.055  29.493  1.00  0.00              
ATOM     10  CA  ILE    10      26.095   8.904  26.140  1.00  0.00              
ATOM     11  CA  MET    11      27.409  11.545  23.812  1.00  0.00              
ATOM     12  CA  THR    12      25.785  11.916  20.437  1.00  0.00              
ATOM     13  CA  PHE    13      27.008  14.228  17.727  1.00  0.00              
ATOM     14  CA  SER    14      26.117  13.351  14.144  1.00  0.00              
ATOM     15  CA  GLY    15      24.105  16.446  13.244  1.00  0.00              
ATOM     16  CA  GLN    16      20.700  14.905  13.910  1.00  0.00              
ATOM     17  CA  GLU    17      21.279  12.849  17.001  1.00  0.00              
ATOM     18  CA  LEU    18      23.262  15.113  19.280  1.00  0.00              
ATOM     19  CA  THR    19      20.688  17.887  18.627  1.00  0.00              
ATOM     20  CA  ALA    20      17.904  15.507  19.639  1.00  0.00              
ATOM     21  CA  ILE    21      19.766  14.571  22.851  1.00  0.00              
ATOM     22  CA  ILE    22      20.294  18.245  23.760  1.00  0.00              
ATOM     23  CA  LYS    23      16.627  19.090  23.205  1.00  0.00              
ATOM     24  CA  MET    24      15.676  16.107  25.422  1.00  0.00              
ATOM     25  CA  ALA    25      18.116  17.264  28.119  1.00  0.00              
ATOM     26  CA  LYS    26      16.663  20.705  28.424  1.00  0.00              
ATOM     27  CA  SER    27      13.038  19.422  28.759  1.00  0.00              
ATOM     28  CA  MET    28      14.318  16.977  31.438  1.00  0.00              
ATOM     29  CA  VAL    29      16.420  19.123  33.640  1.00  0.00              
ATOM     30  CA  MET    30      19.740  18.434  35.295  1.00  0.00              
ATOM     31  CA  ALA    31      20.188  20.206  38.659  1.00  0.00              
ATOM     32  CA  ASP    32      23.841  20.040  39.317  1.00  0.00              
ATOM     33  CA  GLY    33      24.896  21.272  35.942  1.00  0.00              
ATOM     34  CA  LYS    34      26.485  17.998  34.997  1.00  0.00              
ATOM     35  CA  ILE    35      25.483  17.623  31.411  1.00  0.00              
ATOM     36  CA  LYS    36      26.137  20.596  29.096  1.00  0.00              
ATOM     37  CA  PRO    37      23.943  20.890  26.059  1.00  0.00              
ATOM     38  CA  ALA    38      26.722  20.240  23.485  1.00  0.00              
ATOM     39  CA  GLU    39      28.093  17.148  25.130  1.00  0.00              
ATOM     40  CA  ILE    40      25.203  15.176  26.423  1.00  0.00              
ATOM     41  CA  ALA    41      25.840  12.673  29.265  1.00  0.00              
ATOM     42  CA  VAL    42      23.198  10.314  30.503  1.00  0.00              
ATOM     43  CA  MET    43      23.517   8.472  33.843  1.00  0.00              
ATOM     44  CA  THR    44      20.323   6.750  34.912  1.00  0.00              
ATOM     45  CA  ARG    45      20.488   6.863  38.725  1.00  0.00              
ATOM     46  CA  GLU    46      21.812  10.393  38.423  1.00  0.00              
ATOM     47  CA  PHE    47      18.774  11.594  36.408  1.00  0.00              
ATOM     48  CA  MET    48      16.091  10.239  38.664  1.00  0.00              
ATOM     49  CA  ARG    49      18.079  11.728  41.631  1.00  0.00              
ATOM     50  CA  PHE    50      18.515  15.213  40.135  1.00  0.00              
ATOM     51  CA  GLY    51      14.836  15.490  39.414  1.00  0.00              
ATOM     52  CA  ILE    52      14.526  15.871  35.685  1.00  0.00              
ATOM     53  CA  LEU    53      11.323  13.768  35.376  1.00  0.00              
ATOM     54  CA  GLN    54      12.686  10.313  35.955  1.00  0.00              
ATOM     55  CA  ASP    55      10.097   8.467  33.866  1.00  0.00              
ATOM     56  CA  GLN    56      10.539  11.054  31.089  1.00  0.00              
ATOM     57  CA  VAL    57      14.332  10.605  31.033  1.00  0.00              
ATOM     58  CA  ASP    58      14.087   6.784  30.865  1.00  0.00              
ATOM     59  CA  LEU    59      11.695   7.189  27.923  1.00  0.00              
ATOM     60  CA  LEU    60      14.065   9.601  26.164  1.00  0.00              
ATOM     61  CA  LEU    61      17.069   7.318  26.743  1.00  0.00              
ATOM     62  CA  LYS    62      15.257   4.254  25.402  1.00  0.00              
ATOM     63  CA  ALA    63      13.970   6.013  22.263  1.00  0.00              
ATOM     64  CA  SER    64      17.320   7.584  21.319  1.00  0.00              
ATOM     65  CA  ASP    65      19.153   4.243  21.702  1.00  0.00              
ATOM     66  CA  SER    66      16.763   2.273  19.462  1.00  0.00              
ATOM     67  CA  ILE    67      16.954   4.679  16.477  1.00  0.00              
ATOM     68  CA  GLU    68      20.720   4.852  16.949  1.00  0.00              
ATOM     69  CA  ALA    69      21.569   1.123  17.082  1.00  0.00              
ATOM     70  CA  SER    70      19.883   0.197  13.839  1.00  0.00              
ATOM     71  CA  GLN    71      21.648   3.052  11.987  1.00  0.00              
ATOM     72  CA  ALA    72      25.030   2.087  13.419  1.00  0.00              
ATOM     73  CA  VAL    73      25.086  -1.623  12.543  1.00  0.00              
ATOM     74  CA  ALA    74      24.064  -0.771   8.970  1.00  0.00              
ATOM     75  CA  LEU    75      26.696   1.942   8.492  1.00  0.00              
ATOM     76  CA  ILE    76      29.559  -0.225   9.819  1.00  0.00              
ATOM     77  CA  ALA    77      28.466  -3.156   7.743  1.00  0.00              
ATOM     78  CA  ARG    78      28.175  -1.300   4.488  1.00  0.00              
ATOM     79  CA  MET    79      31.407   0.727   4.720  1.00  0.00              
ATOM     80  CA  ASP    80      33.795  -1.970   5.644  1.00  0.00              
ATOM     81  CA  GLU    81      36.861  -1.928   3.424  1.00  0.00              
ATOM     82  CA  GLU    82      37.115   1.897   3.451  1.00  0.00              
ATOM     83  CA  ARG    83      36.704   1.982   7.204  1.00  0.00              
ATOM     84  CA  LYS    84      39.456  -0.615   7.784  1.00  0.00              
ATOM     85  CA  LYS    85      41.857   1.286   5.608  1.00  0.00              
ATOM     86  CA  TYR    86      41.170   4.686   7.237  1.00  0.00              
ATOM     87  CA  VAL    87      41.517   3.255  10.714  1.00  0.00              
ATOM     88  CA  ALA    88      44.830   1.480   9.919  1.00  0.00              
ATOM     89  CA  SER    89      46.403   4.561   8.439  1.00  0.00              
ATOM     90  CA  TYR    90      45.484   6.844  11.279  1.00  0.00              
ATOM     91  CA  LEU    91      46.676   4.359  13.922  1.00  0.00              
ATOM     92  CA  GLY    92      50.027   3.815  12.145  1.00  0.00              
ATOM     93  CA  VAL    93      50.488   7.618  12.582  1.00  0.00              
ATOM     94  CA  ILE    94      49.079   8.108  16.022  1.00  0.00              
ATOM     95  CA  MET    95      47.268  11.321  16.694  1.00  0.00              
ATOM     96  CA  ALA    96      46.107  12.097  20.197  1.00  0.00              
ATOM     97  CA  SER    97      44.853  15.612  21.000  1.00  0.00              
ATOM     98  CA  ASP    98      47.622  16.771  23.332  1.00  0.00              
ATOM     99  CA  GLY    99      50.379  15.701  20.930  1.00  0.00              
ATOM    100  CA  ASP   100      52.074  13.135  23.154  1.00  0.00              
ATOM    101  CA  ILE   101      51.817  10.056  21.062  1.00  0.00              
ATOM    102  CA  ASP   102      54.642   7.915  19.934  1.00  0.00              
ATOM    103  CA  ASP   103      55.012   7.443  16.233  1.00  0.00              
ATOM    104  CA  ASN   104      53.487   3.934  16.121  1.00  0.00              
ATOM    105  CA  GLU   105      50.796   4.553  18.719  1.00  0.00              
ATOM    106  CA  LEU   106      47.727   6.481  19.658  1.00  0.00              
ATOM    107  CA  ALA   107      44.647   6.684  17.395  1.00  0.00              
ATOM    108  CA  LEU   108      42.377   9.653  17.706  1.00  0.00              
ATOM    109  CA  TRP   109      38.970   8.480  16.392  1.00  0.00              
ATOM    110  CA  THR   110      39.671   5.318  18.402  1.00  0.00              
ATOM    111  CA  LEU   111      40.140   7.214  21.674  1.00  0.00              
ATOM    112  CA  ILE   112      37.019   9.337  21.150  1.00  0.00              
ATOM    113  CA  SER   113      34.898   6.460  19.998  1.00  0.00              
ATOM    114  CA  THR   114      35.793   4.407  23.036  1.00  0.00              
ATOM    115  CA  LEU   115      35.074   7.132  25.506  1.00  0.00              
ATOM    116  CA  CYS   116      31.745   8.065  24.023  1.00  0.00              
ATOM    117  CA  GLY   117      30.401   4.531  23.367  1.00  0.00              
ATOM    118  CA  LEU   118      30.023   5.248  19.688  1.00  0.00              
ATOM    119  CA  PRO   119      30.248   2.517  17.144  1.00  0.00              
ATOM    120  CA  THR   120      33.561   2.806  15.388  1.00  0.00              
ATOM    121  CA  MET   121      32.448   3.139  11.747  1.00  0.00              
ATOM    122  CA  THR   122      29.840   5.841  12.585  1.00  0.00              
ATOM    123  CA  VAL   123      32.244   7.960  14.603  1.00  0.00              
ATOM    124  CA  MET   124      34.982   7.807  11.923  1.00  0.00              
ATOM    125  CA  GLU   125      32.578   8.985   9.252  1.00  0.00              
ATOM    126  CA  ALA   126      31.426  11.876  11.480  1.00  0.00              
ATOM    127  CA  ILE   127      34.984  12.961  12.282  1.00  0.00              
ATOM    128  CA  ASN   128      35.944  12.934   8.561  1.00  0.00              
ATOM    129  CA  ASN   129      32.935  15.015   7.666  1.00  0.00              
ATOM    130  CA  MET   130      33.481  17.711  10.324  1.00  0.00              
ATOM    131  CA  LYS   131      37.450  17.950   8.960  1.00  0.00              
ATOM    132  CA  ASN   132      36.187  18.299   5.365  1.00  0.00              
ATOM    133  CA  LEU   133      33.661  21.086   7.107  1.00  0.00              
TER                                                                             
END
