
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  165 (  165),  selected  165 , name T0308TS168_3
# Molecule2: number of CA atoms  165 ( 1274),  selected  165 , name T0308
# PARAMETERS: T0308TS168_3.T0308  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    E       1      E       1          1.457
LGA    V       2      V       2          1.103
LGA    H       3      H       3          0.425
LGA    V       4      V       4          1.346
LGA    L       5      L       5          0.870
LGA    C       6      C       6          0.942
LGA    L       7      L       7          0.556
LGA    G       8      G       8          0.943
LGA    L       9      L       9          0.107
LGA    D      10      D      10          0.844
LGA    N      11      N      11          0.555
LGA    S      12      S      12          0.689
LGA    G      13      G      13          1.525
LGA    K      14      K      14          0.867
LGA    T      15      T      15          1.009
LGA    T      16      T      16          0.807
LGA    I      17      I      17          0.588
LGA    I      18      I      18          0.623
LGA    N      19      N      19          0.872
LGA    K      20      K      20          0.849
LGA    L      21      L      21          0.849
LGA    K      22      K      22          1.111
LGA    P      23      P      23          3.043
LGA    S      24      S      24          2.567
LGA    N      25      N      25           #
LGA    A      26      A      26          3.614
LGA    Q      27      Q      27          3.947
LGA    S      28      S      28           #
LGA    Q      29      Q      29          3.473
LGA    N      30      N      30          3.082
LGA    I      31      I      31          1.169
LGA    L      32      L      32          1.771
LGA    P      33      P      33          1.563
LGA    T      34      T      34          0.654
LGA    I      35      I      35          0.541
LGA    G      36      G      36          2.899
LGA    F      37      F      37          1.706
LGA    S      38      S      38          1.992
LGA    I      39      I      39          2.046
LGA    E      40      E      40          0.858
LGA    K      41      K      41          1.956
LGA    F      42      F      42          1.873
LGA    K      43      K      43          2.712
LGA    S      44      S      44          3.895
LGA    S      45      S      45          5.600
LGA    S      46      S      46          5.853
LGA    L      47      L      47          2.777
LGA    S      48      S      48          2.065
LGA    F      49      F      49          2.486
LGA    T      50      T      50          3.063
LGA    V      51      V      51          3.203
LGA    F      52      F      52          1.898
LGA    D      53      D      53          1.486
LGA    M      54      M      54          1.340
LGA    S      55      S      55          1.201
LGA    G      56      G      56          2.194
LGA    Q      57      Q      57          2.981
LGA    G      58      G      58          3.576
LGA    R      59      R      59          4.308
LGA    Y      60      Y      60          1.699
LGA    R      61      R      61          1.195
LGA    N      62      N      62          1.461
LGA    L      63      L      63          1.035
LGA    W      64      W      64          1.292
LGA    E      65      E      65          1.138
LGA    H      66      H      66          0.873
LGA    Y      67      Y      67          0.592
LGA    Y      68      Y      68          0.756
LGA    K      69      K      69          1.472
LGA    E      70      E      70          2.362
LGA    G      71      G      71          2.562
LGA    Q      72      Q      72          2.514
LGA    A      73      A      73          0.974
LGA    I      74      I      74          0.563
LGA    I      75      I      75          0.987
LGA    F      76      F      76          1.190
LGA    V      77      V      77          1.245
LGA    I      78      I      78          0.983
LGA    D      79      D      79          0.799
LGA    S      80      S      80          1.324
LGA    S      81      S      81          1.768
LGA    D      82      D      82          2.067
LGA    R      83      R      83          1.379
LGA    L      84      L      84          1.885
LGA    R      85      R      85          1.225
LGA    M      86      M      86          1.903
LGA    V      87      V      87          2.114
LGA    V      88      V      88          0.912
LGA    A      89      A      89          1.483
LGA    K      90      K      90          2.450
LGA    E      91      E      91          1.948
LGA    E      92      E      92          0.784
LGA    L      93      L      93          1.902
LGA    D      94      D      94          2.228
LGA    T      95      T      95          1.152
LGA    L      96      L      96          1.037
LGA    L      97      L      97          1.786
LGA    N      98      N      98          1.700
LGA    H      99      H      99          2.240
LGA    P     100      P     100          2.603
LGA    D     101      D     101          1.931
LGA    I     102      I     102          2.022
LGA    K     103      K     103           #
LGA    H     104      H     104          2.329
LGA    R     105      R     105          3.659
LGA    R     106      R     106          1.212
LGA    I     107      I     107          1.535
LGA    P     108      P     108          0.252
LGA    I     109      I     109          0.911
LGA    L     110      L     110          1.311
LGA    F     111      F     111          0.632
LGA    F     112      F     112          0.428
LGA    A     113      A     113          0.548
LGA    N     114      N     114          0.634
LGA    K     115      K     115          0.965
LGA    M     116      M     116          1.832
LGA    D     117      D     117          0.992
LGA    L     118      L     118          1.553
LGA    R     119      R     119          1.941
LGA    D     120      D     120          3.203
LGA    A     121      A     121          1.532
LGA    V     122      V     122          1.487
LGA    T     123      T     123          2.610
LGA    S     124      S     124          3.293
LGA    V     125      V     125          3.420
LGA    K     126      K     126          2.919
LGA    V     127      V     127          2.011
LGA    S     128      S     128          2.203
LGA    Q     129      Q     129          2.056
LGA    L     130      L     130          1.177
LGA    L     131      L     131          0.794
LGA    C     132      C     132          0.543
LGA    L     133      L     133          1.486
LGA    E     134      E     134          1.176
LGA    N     135      N     135          1.634
LGA    I     136      I     136          2.011
LGA    K     137      K     137          2.197
LGA    D     138      D     138          2.346
LGA    K     139      K     139          2.020
LGA    P     140      P     140          1.589
LGA    W     141      W     141          2.443
LGA    H     142      H     142          1.747
LGA    I     143      I     143          1.366
LGA    C     144      C     144          1.909
LGA    A     145      A     145          2.288
LGA    S     146      S     146          1.936
LGA    D     147      D     147          1.912
LGA    A     148      A     148          0.741
LGA    I     149      I     149          2.713
LGA    K     150      K     150          2.674
LGA    G     151      G     151          2.112
LGA    E     152      E     152          2.543
LGA    G     153      G     153          2.130
LGA    L     154      L     154          1.564
LGA    Q     155      Q     155          2.207
LGA    E     156      E     156          2.183
LGA    G     157      G     157          1.263
LGA    V     158      V     158          1.757
LGA    D     159      D     159          2.556
LGA    W     160      W     160          1.966
LGA    L     161      L     161          1.588
LGA    Q     162      Q     162          2.449
LGA    D     163      D     163          2.434
LGA    Q     164      Q     164          1.441
LGA    I     165      I     165          2.777

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  165  165    5.0    162    2.01   100.00     75.712     7.668

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.054477 * X  +   0.896401 * Y  +   0.439883 * Z  +   4.177120
  Y_new =   0.733916 * X  +   0.262764 * Y  +  -0.626357 * Z  +  31.620497
  Z_new =  -0.677052 * X  +   0.356959 * Y  +  -0.643568 * Z  +  17.984499 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.635182   -0.506411  [ DEG:   150.9848    -29.0152 ]
  Theta =   0.743750    2.397843  [ DEG:    42.6137    137.3863 ]
  Phi   =   1.496704   -1.644888  [ DEG:    85.7548    -94.2452 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0308TS168_3                                  
REMARK     2: T0308                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0308TS168_3.T0308 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  165  165   5.0  162   2.01  100.00  75.712
REMARK  ---------------------------------------------------------- 
MOLECULE T0308TS168_3
PFRMAT TS
TARGET T0308
MODEL 3
PARENT N/A
ATOM      1  CA  GLU     1      -4.773  17.541  27.683  1.00 25.00           C
ATOM      2  CA  VAL     2      -2.929  20.472  26.010  1.00 25.00           C
ATOM      3  CA  HIS     3      -0.685  23.476  26.822  1.00 25.00           C
ATOM      4  CA  VAL     4       1.282  26.267  25.278  1.00 25.00           C
ATOM      5  CA  LEU     5       4.036  28.947  25.102  1.00 25.00           C
ATOM      6  CA  CYS     6       3.820  31.176  22.029  1.00 25.00           C
ATOM      7  CA  LEU     7       6.838  33.481  22.261  1.00 25.00           C
ATOM      8  CA  GLY     8       6.899  36.448  19.976  1.00 25.00           C
ATOM      9  CA  LEU     9       8.594  39.825  20.220  1.00 25.00           C
ATOM     10  CA  ASP    10       5.449  41.835  21.083  1.00 25.00           C
ATOM     11  CA  ASN    11       4.551  43.397  17.713  1.00 25.00           C
ATOM     12  CA  SER    12       4.905  39.724  16.578  1.00 25.00           C
ATOM     13  CA  GLY    13       1.562  38.893  14.945  1.00 25.00           C
ATOM     14  CA  LYS    14       0.943  36.862  18.104  1.00 25.00           C
ATOM     15  CA  THR    15      -2.215  38.212  19.799  1.00 25.00           C
ATOM     16  CA  THR    16      -3.921  38.572  16.390  1.00 25.00           C
ATOM     17  CA  ILE    17      -2.954  34.975  15.499  1.00 25.00           C
ATOM     18  CA  ILE    18      -4.367  33.742  18.837  1.00 25.00           C
ATOM     19  CA  ASN    19      -7.626  35.644  18.190  1.00 25.00           C
ATOM     20  CA  LYS    20      -7.865  34.094  14.696  1.00 25.00           C
ATOM     21  CA  LEU    21      -7.305  30.607  16.178  1.00 25.00           C
ATOM     22  CA  LYS    22     -10.045  31.246  18.777  1.00 25.00           C
ATOM     23  CA  PRO    23     -12.421  30.334  15.978  1.00 25.00           C
ATOM     24  CA  SER    24     -14.927  32.449  17.935  1.00 25.00           C
ATOM     25  CA  ASN    25     -13.374  35.527  16.362  1.00 25.00           C
ATOM     26  CA  ALA    26     -13.608  36.953  19.900  1.00 25.00           C
ATOM     27  CA  GLN    27     -12.817  40.553  18.782  1.00 25.00           C
ATOM     28  CA  SER    28     -11.787  43.163  16.163  1.00 25.00           C
ATOM     29  CA  GLN    29      -9.734  45.522  18.347  1.00 25.00           C
ATOM     30  CA  ASN    30      -7.523  47.697  20.614  1.00 25.00           C
ATOM     31  CA  ILE    31      -6.566  44.294  22.018  1.00 25.00           C
ATOM     32  CA  LEU    32      -4.630  46.185  24.701  1.00 25.00           C
ATOM     33  CA  PRO    33      -1.579  43.964  24.597  1.00 25.00           C
ATOM     34  CA  THR    34      -0.162  41.510  27.072  1.00 25.00           C
ATOM     35  CA  ILE    35      -0.066  43.144  30.491  1.00 25.00           C
ATOM     36  CA  GLY    36      -0.208  39.634  31.866  1.00 25.00           C
ATOM     37  CA  PHE    37      -0.595  36.174  30.238  1.00 25.00           C
ATOM     38  CA  SER    38      -3.696  37.026  28.143  1.00 25.00           C
ATOM     39  CA  ILE    39      -4.576  33.360  27.640  1.00 25.00           C
ATOM     40  CA  GLU    40      -6.901  30.831  25.941  1.00 25.00           C
ATOM     41  CA  LYS    41      -8.474  27.454  26.742  1.00 25.00           C
ATOM     42  CA  PHE    42      -9.580  27.094  23.149  1.00 25.00           C
ATOM     43  CA  LYS    43     -11.911  24.398  21.683  1.00 25.00           C
ATOM     44  CA  SER    44     -11.920  21.877  18.842  1.00 25.00           C
ATOM     45  CA  SER    45     -12.665  18.170  19.292  1.00 25.00           C
ATOM     46  CA  SER    46     -11.940  17.506  23.019  1.00 25.00           C
ATOM     47  CA  LEU    47      -8.916  19.693  22.252  1.00 25.00           C
ATOM     48  CA  SER    48      -7.145  22.674  23.775  1.00 25.00           C
ATOM     49  CA  PHE    49      -4.474  23.979  21.424  1.00 25.00           C
ATOM     50  CA  THR    50      -3.928  26.938  23.733  1.00 25.00           C
ATOM     51  CA  VAL    51      -1.815  29.794  22.439  1.00 25.00           C
ATOM     52  CA  PHE    52      -0.443  31.127  25.738  1.00 25.00           C
ATOM     53  CA  ASP    53       0.409  34.449  24.156  1.00 25.00           C
ATOM     54  CA  MET    54       3.504  36.289  25.525  1.00 25.00           C
ATOM     55  CA  SER    55       4.852  39.825  25.735  1.00 25.00           C
ATOM     56  CA  GLY    56       8.581  40.666  25.346  1.00 25.00           C
ATOM     57  CA  GLN    57       9.547  43.240  28.034  1.00 25.00           C
ATOM     58  CA  GLY    58      12.355  41.635  29.974  1.00 25.00           C
ATOM     59  CA  ARG    59       9.966  40.758  32.835  1.00 25.00           C
ATOM     60  CA  TYR    60       7.470  39.285  30.331  1.00 25.00           C
ATOM     61  CA  ARG    61      10.261  37.206  28.733  1.00 25.00           C
ATOM     62  CA  ASN    62      11.323  35.933  32.186  1.00 25.00           C
ATOM     63  CA  LEU    63       7.697  34.986  32.978  1.00 25.00           C
ATOM     64  CA  TRP    64       7.430  33.120  29.644  1.00 25.00           C
ATOM     65  CA  GLU    65      10.683  31.247  30.404  1.00 25.00           C
ATOM     66  CA  HIS    66       9.356  30.296  33.868  1.00 25.00           C
ATOM     67  CA  TYR    67       6.099  29.032  32.299  1.00 25.00           C
ATOM     68  CA  TYR    68       8.093  26.954  29.774  1.00 25.00           C
ATOM     69  CA  LYS    69       6.596  23.740  31.228  1.00 25.00           C
ATOM     70  CA  GLU    70       4.271  21.029  30.019  1.00 25.00           C
ATOM     71  CA  GLY    71       4.430  21.558  26.272  1.00 25.00           C
ATOM     72  CA  GLN    72       2.129  19.915  23.704  1.00 25.00           C
ATOM     73  CA  ALA    73       3.339  22.778  21.457  1.00 25.00           C
ATOM     74  CA  ILE    74       5.210  26.009  20.603  1.00 25.00           C
ATOM     75  CA  ILE    75       4.609  28.553  17.834  1.00 25.00           C
ATOM     76  CA  PHE    76       6.053  32.050  17.307  1.00 25.00           C
ATOM     77  CA  VAL    77       5.067  35.196  15.299  1.00 25.00           C
ATOM     78  CA  ILE    78       8.533  36.580  14.483  1.00 25.00           C
ATOM     79  CA  ASP    79       7.615  39.595  12.319  1.00 25.00           C
ATOM     80  CA  SER    80       7.630  40.539   8.634  1.00 25.00           C
ATOM     81  CA  SER    81       9.037  44.061   8.917  1.00 25.00           C
ATOM     82  CA  ASP    82      11.255  45.624  11.541  1.00 25.00           C
ATOM     83  CA  ARG    83      14.220  43.480  10.679  1.00 25.00           C
ATOM     84  CA  LEU    84      16.277  44.000  13.868  1.00 25.00           C
ATOM     85  CA  ARG    85      13.173  43.333  16.009  1.00 25.00           C
ATOM     86  CA  MET    86      12.468  40.129  14.032  1.00 25.00           C
ATOM     87  CA  VAL    87      16.092  38.994  14.533  1.00 25.00           C
ATOM     88  CA  VAL    88      15.812  39.677  18.291  1.00 25.00           C
ATOM     89  CA  ALA    89      12.561  37.660  18.441  1.00 25.00           C
ATOM     90  CA  LYS    90      14.244  34.763  16.587  1.00 25.00           C
ATOM     91  CA  GLU    91      17.186  34.871  19.037  1.00 25.00           C
ATOM     92  CA  GLU    92      14.755  34.816  21.996  1.00 25.00           C
ATOM     93  CA  LEU    93      12.933  31.811  20.473  1.00 25.00           C
ATOM     94  CA  ASP    94      16.270  29.995  19.999  1.00 25.00           C
ATOM     95  CA  THR    95      17.209  30.715  23.641  1.00 25.00           C
ATOM     96  CA  LEU    96      13.819  29.366  24.806  1.00 25.00           C
ATOM     97  CA  LEU    97      14.333  26.200  22.715  1.00 25.00           C
ATOM     98  CA  ASN    98      17.687  25.216  24.334  1.00 25.00           C
ATOM     99  CA  HIS    99      16.264  24.479  27.736  1.00 25.00           C
ATOM    100  CA  PRO   100      15.388  21.954  30.437  1.00 25.00           C
ATOM    101  CA  ASP   101      11.802  23.182  30.898  1.00 25.00           C
ATOM    102  CA  ILE   102      11.588  22.641  27.207  1.00 25.00           C
ATOM    103  CA  LYS   103      10.676  19.049  27.948  1.00 25.00           C
ATOM    104  CA  HIS   104      13.686  17.934  25.950  1.00 25.00           C
ATOM    105  CA  ARG   105      13.909  19.739  22.574  1.00 25.00           C
ATOM    106  CA  ARG   106      10.678  17.910  21.801  1.00 25.00           C
ATOM    107  CA  ILE   107       8.654  21.110  21.427  1.00 25.00           C
ATOM    108  CA  PRO   108       7.032  20.727  18.069  1.00 25.00           C
ATOM    109  CA  ILE   109       8.244  24.032  16.760  1.00 25.00           C
ATOM    110  CA  LEU   110       6.219  25.806  14.076  1.00 25.00           C
ATOM    111  CA  PHE   111       6.974  29.361  12.963  1.00 25.00           C
ATOM    112  CA  PHE   112       4.155  31.673  11.841  1.00 25.00           C
ATOM    113  CA  ALA   113       6.227  34.210  10.019  1.00 25.00           C
ATOM    114  CA  ASN   114       3.816  37.140  10.029  1.00 25.00           C
ATOM    115  CA  LYS   115       1.907  40.457   9.702  1.00 25.00           C
ATOM    116  CA  MET   116       3.228  40.251   6.095  1.00 25.00           C
ATOM    117  CA  ASP   117       0.842  40.945   3.216  1.00 25.00           C
ATOM    118  CA  LEU   118       1.233  44.555   4.338  1.00 25.00           C
ATOM    119  CA  ARG   119       3.018  45.349   1.109  1.00 25.00           C
ATOM    120  CA  ASP   120       6.784  45.199   0.667  1.00 25.00           C
ATOM    121  CA  ALA   121       7.124  42.753   3.559  1.00 25.00           C
ATOM    122  CA  VAL   122       9.902  40.193   3.865  1.00 25.00           C
ATOM    123  CA  THR   123       7.363  37.619   2.714  1.00 25.00           C
ATOM    124  CA  SER   124       9.780  34.715   3.443  1.00 25.00           C
ATOM    125  CA  VAL   125      13.016  33.363   1.905  1.00 25.00           C
ATOM    126  CA  LYS   126      14.986  36.270   3.432  1.00 25.00           C
ATOM    127  CA  VAL   127      13.410  35.572   6.853  1.00 25.00           C
ATOM    128  CA  SER   128      14.332  31.868   6.550  1.00 25.00           C
ATOM    129  CA  GLN   129      17.932  32.812   5.647  1.00 25.00           C
ATOM    130  CA  LEU   130      18.105  35.149   8.676  1.00 25.00           C
ATOM    131  CA  LEU   131      16.789  32.353  10.939  1.00 25.00           C
ATOM    132  CA  CYS   132      18.505  29.046  10.178  1.00 25.00           C
ATOM    133  CA  LEU   133      15.670  26.499   9.993  1.00 25.00           C
ATOM    134  CA  GLU   134      17.915  23.891   8.419  1.00 25.00           C
ATOM    135  CA  ASN   135      20.528  24.547  11.142  1.00 25.00           C
ATOM    136  CA  ILE   136      18.588  23.466  14.230  1.00 25.00           C
ATOM    137  CA  LYS   137      17.693  20.181  12.556  1.00 25.00           C
ATOM    138  CA  ASP   138      16.765  17.942  15.405  1.00 25.00           C
ATOM    139  CA  LYS   139      13.709  20.032  16.215  1.00 25.00           C
ATOM    140  CA  PRO   140      10.980  19.174  13.765  1.00 25.00           C
ATOM    141  CA  TRP   141      11.442  22.863  12.703  1.00 25.00           C
ATOM    142  CA  HIS   142       8.692  23.219  10.146  1.00 25.00           C
ATOM    143  CA  ILE   143       7.529  26.478   8.707  1.00 25.00           C
ATOM    144  CA  CYS   144       3.875  27.684   8.612  1.00 25.00           C
ATOM    145  CA  ALA   145       4.008  30.577   6.124  1.00 25.00           C
ATOM    146  CA  SER   146       1.200  32.706   7.663  1.00 25.00           C
ATOM    147  CA  ASP   147      -0.947  35.772   8.029  1.00 25.00           C
ATOM    148  CA  ALA   148      -2.800  37.239  10.950  1.00 25.00           C
ATOM    149  CA  ILE   149      -5.345  38.614   8.418  1.00 25.00           C
ATOM    150  CA  LYS   150      -6.820  36.585   5.546  1.00 25.00           C
ATOM    151  CA  GLY   151      -5.535  33.640   7.583  1.00 25.00           C
ATOM    152  CA  GLU   152      -3.969  31.240   5.104  1.00 25.00           C
ATOM    153  CA  GLY   153      -2.279  28.681   7.364  1.00 25.00           C
ATOM    154  CA  LEU   154      -2.136  29.145  11.094  1.00 25.00           C
ATOM    155  CA  GLN   155      -4.998  26.623  11.421  1.00 25.00           C
ATOM    156  CA  GLU   156      -2.944  24.007   9.523  1.00 25.00           C
ATOM    157  CA  GLY   157       0.047  24.647  11.828  1.00 25.00           C
ATOM    158  CA  VAL   158      -2.205  24.248  14.900  1.00 25.00           C
ATOM    159  CA  ASP   159      -3.572  20.956  13.502  1.00 25.00           C
ATOM    160  CA  TRP   160      -0.004  19.706  12.890  1.00 25.00           C
ATOM    161  CA  LEU   161       0.965  20.641  16.475  1.00 25.00           C
ATOM    162  CA  GLN   162      -2.099  18.775  17.817  1.00 25.00           C
ATOM    163  CA  ASP   163      -1.162  15.696  15.740  1.00 25.00           C
ATOM    164  CA  GLN   164       2.417  15.841  17.094  1.00 25.00           C
ATOM    165  CA  ILE   165       1.812  15.532  20.870  1.00 25.00           C
TER
END
