
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  106 (  106),  selected  106 , name T0314TS599_3
# Molecule2: number of CA atoms  106 ( 1704),  selected  106 , name T0314.pdb
# PARAMETERS: T0314TS599_3.T0314.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.548
LGA    -       -      S       2           -
LGA    S       2      I       3          2.583
LGA    I       3      T       4          0.536
LGA    T       4      S       5          2.032
LGA    S       5      T       6          0.930
LGA    T       6      D       7          1.763
LGA    D       7      I       8          2.858
LGA    I       8      -       -           -
LGA    C       9      C       9          0.817
LGA    Q      10      Q      10          1.745
LGA    A      11      A      11          3.258
LGA    A      12      A      12          3.784
LGA    D      13      D      13          4.683
LGA    A      14      A      14           #
LGA    L      15      L      15           #
LGA    -       -      K      16           -
LGA    -       -      G      17           -
LGA    -       -      F      18           -
LGA    -       -      V      19           -
LGA    -       -      G      20           -
LGA    -       -      F      21           -
LGA    -       -      N      22           -
LGA    -       -      R      23           -
LGA    -       -      K      24           -
LGA    -       -      T      25           -
LGA    -       -      G      26           -
LGA    -       -      R      27           -
LGA    -       -      Y      28           -
LGA    -       -      I      29           -
LGA    -       -      V      30           -
LGA    -       -      R      31           -
LGA    -       -      F      32           -
LGA    -       -      S      33           -
LGA    -       -      E      34           -
LGA    -       -      D      35           -
LGA    -       -      S      36           -
LGA    -       -      F      37           -
LGA    -       -      G      38           -
LGA    -       -      M      39           -
LGA    -       -      D      40           -
LGA    -       -      V      41           -
LGA    -       -      A      42           -
LGA    -       -      D      43           -
LGA    -       -      D      44           -
LGA    -       -      S      45           -
LGA    -       -      I      46           -
LGA    -       -      T      47           -
LGA    -       -      P      48           -
LGA    -       -      T      49           -
LGA    K      16      S      50           #
LGA    G      17      E      51          1.334
LGA    F      18      F      52          1.714
LGA    V      19      V      53          3.876
LGA    G      20      W      54           -
LGA    F      21      S      55           -
LGA    N      22      S      56           -
LGA    R      23      V      57           -
LGA    K      24      R      58           -
LGA    T      25      D      59           -
LGA    G      26      D      60           -
LGA    R      27      V      61           -
LGA    -       -      M      62           -
LGA    -       -      R      63           -
LGA    -       -      L      64           -
LGA    Y      28      G      65          3.611
LGA    -       -      R      66           -
LGA    I      29      E      67          2.398
LGA    V      30      Q      68          1.695
LGA    R      31      L      69          1.396
LGA    -       -      Q      70           -
LGA    -       -      I      71           -
LGA    F      32      L      72          4.214
LGA    S      33      L      73          5.375
LGA    -       -      E      74           -
LGA    -       -      Q      75           -
LGA    -       -      N      76           -
LGA    E      34      I      77          3.464
LGA    D      35      N      78          1.901
LGA    -       -      E      79           -
LGA    -       -      R      80           -
LGA    -       -      L      81           -
LGA    -       -      N      82           -
LGA    S      36      I      83          2.199
LGA    F      37      G      84          1.877
LGA    G      38      E      85          1.908
LGA    M      39      P      86          2.385
LGA    -       -      L      87           -
LGA    -       -      L      88           -
LGA    D      40      V      89          0.740
LGA    V      41      Y      90          2.199
LGA    -       -      L      91           -
LGA    -       -      R      92           -
LGA    A      42      R      93          0.872
LGA    D      43      Q      94          4.546
LGA    D      44      D      95           -
LGA    S      45      -       -           -
LGA    I      46      -       -           -
LGA    T      47      -       -           -
LGA    P      48      -       -           -
LGA    T      49      -       -           -
LGA    S      50      -       -           -
LGA    E      51      -       -           -
LGA    F      52      -       -           -
LGA    V      53      -       -           -
LGA    W      54      -       -           -
LGA    S      55      -       -           -
LGA    S      56      -       -           -
LGA    V      57      -       -           -
LGA    R      58      -       -           -
LGA    D      59      -       -           -
LGA    D      60      -       -           -
LGA    V      61      L      96          5.686
LGA    M      62      P      97          2.040
LGA    R      63      E      98           #
LGA    L      64      I      99          4.270
LGA    G      65      T     100           #
LGA    R      66      -       -           -
LGA    E      67      -       -           -
LGA    Q      68      A     101          4.214
LGA    L      69      Q     102          3.501
LGA    Q      70      R     103          2.955
LGA    I      71      -       -           -
LGA    L      72      -       -           -
LGA    L      73      -       -           -
LGA    E      74      Q     104          4.259
LGA    Q      75      L     105           -
LGA    N      76      R     106           -
LGA    I      77      -       -           -
LGA    N      78      -       -           -
LGA    E      79      -       -           -
LGA    R      80      -       -           -
LGA    L      81      -       -           -
LGA    N      82      -       -           -
LGA    I      83      -       -           -
LGA    G      84      -       -           -
LGA    E      85      -       -           -
LGA    P      86      -       -           -
LGA    L      87      -       -           -
LGA    L      88      -       -           -
LGA    V      89      -       -           -
LGA    Y      90      -       -           -
LGA    L      91      -       -           -
LGA    R      92      -       -           -
LGA    R      93      -       -           -
LGA    Q      94      -       -           -
LGA    D      95      -       -           -
LGA    L      96      -       -           -
LGA    P      97      -       -           -
LGA    E      98      -       -           -
LGA    I      99      -       -           -
LGA    T     100      -       -           -
LGA    A     101      -       -           -
LGA    Q     102      -       -           -
LGA    R     103      -       -           -
LGA    Q     104      -       -           -
LGA    L     105      -       -           -
LGA    R     106      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  106  106    5.0     38    3.03    21.05     22.039     1.215

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.297373 * X  +   0.290632 * Y  +   0.909452 * Z  +  10.967107
  Y_new =   0.277414 * X  +   0.937750 * Y  +  -0.208966 * Z  +   8.915896
  Z_new =  -0.913570 * X  +   0.190154 * Y  +  -0.359487 * Z  + -17.807137 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.655047   -0.486546  [ DEG:   152.1230    -27.8770 ]
  Theta =   1.151978    1.989614  [ DEG:    66.0035    113.9965 ]
  Phi   =   2.390904   -0.750688  [ DEG:   136.9887    -43.0113 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0314TS599_3                                  
REMARK     2: T0314.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0314TS599_3.T0314.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  106  106   5.0   38   3.03   21.05  22.039
REMARK  ---------------------------------------------------------- 
MOLECULE T0314TS599_3
PFRMAT TS                                                                       
TARGET T0314                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       4.542   3.421  -0.940  1.00  0.00              
ATOM      2  CA  SER     2       2.791   6.172  -3.598  1.00  0.00              
ATOM      3  CA  ILE     3       2.654   9.606  -2.347  1.00  0.00              
ATOM      4  CA  THR     4       3.856  13.330  -0.922  1.00  0.00              
ATOM      5  CA  SER     5       4.459  15.679  -3.796  1.00  0.00              
ATOM      6  CA  THR     6       8.180  15.648  -3.118  1.00  0.00              
ATOM      7  CA  ASP     7       8.467  11.891  -3.429  1.00  0.00              
ATOM      8  CA  ILE     8       6.629  11.754  -6.720  1.00  0.00              
ATOM      9  CA  CYS     9       8.687  14.598  -8.206  1.00  0.00              
ATOM     10  CA  GLN    10      11.981  12.973  -7.186  1.00  0.00              
ATOM     11  CA  ALA    11      10.984   9.576  -8.647  1.00  0.00              
ATOM     12  CA  ALA    12       9.845  11.277 -11.791  1.00  0.00              
ATOM     13  CA  ASP    13      13.233  13.016 -12.178  1.00  0.00              
ATOM     14  CA  ALA    14      15.065   9.675 -12.096  1.00  0.00              
ATOM     15  CA  LEU    15      12.646   8.144 -14.658  1.00  0.00              
ATOM     16  CA  LYS    16      13.066  11.139 -16.967  1.00  0.00              
ATOM     17  CA  GLY    17      16.842  10.905 -17.025  1.00  0.00              
ATOM     18  CA  PHE    18      16.471   7.285 -18.311  1.00  0.00              
ATOM     19  CA  VAL    19      13.693   7.730 -20.783  1.00  0.00              
ATOM     20  CA  GLY    20      12.398   5.290 -23.320  1.00  0.00              
ATOM     21  CA  PHE    21      10.375   6.853 -26.059  1.00  0.00              
ATOM     22  CA  ASN    22       7.611   5.171 -27.947  1.00  0.00              
ATOM     23  CA  ARG    23       7.278   6.637 -31.412  1.00  0.00              
ATOM     24  CA  LYS    24       3.944   5.323 -32.502  1.00  0.00              
ATOM     25  CA  THR    25       1.996   6.312 -29.451  1.00  0.00              
ATOM     26  CA  GLY    26       3.902   9.318 -27.971  1.00  0.00              
ATOM     27  CA  ARG    27       4.275   7.584 -24.650  1.00  0.00              
ATOM     28  CA  TYR    28       7.290   7.894 -22.434  1.00  0.00              
ATOM     29  CA  ILE    29       8.505   4.840 -20.646  1.00  0.00              
ATOM     30  CA  VAL    30      10.734   5.124 -17.655  1.00  0.00              
ATOM     31  CA  ARG    31      12.014   1.939 -16.131  1.00  0.00              
ATOM     32  CA  PHE    32      13.156   1.772 -12.551  1.00  0.00              
ATOM     33  CA  SER    33      15.530  -0.947 -11.524  1.00  0.00              
ATOM     34  CA  GLU    34      14.394  -3.448  -8.965  1.00  0.00              
ATOM     35  CA  ASP    35      16.364  -1.956  -6.029  1.00  0.00              
ATOM     36  CA  SER    36      15.338   1.622  -6.320  1.00  0.00              
ATOM     37  CA  PHE    37      12.629   3.344  -4.333  1.00  0.00              
ATOM     38  CA  GLY    38       9.177   1.911  -4.008  1.00  0.00              
ATOM     39  CA  MET    39       6.203   4.182  -4.854  1.00  0.00              
ATOM     40  CA  ASP    40       2.958   2.727  -6.352  1.00  0.00              
ATOM     41  CA  VAL    41       1.673   4.857  -9.140  1.00  0.00              
ATOM     42  CA  ALA    42      -2.021   4.553  -9.743  1.00  0.00              
ATOM     43  CA  ASP    43      -3.748   6.658 -12.329  1.00  0.00              
ATOM     44  CA  ASP    44      -4.568   3.694 -14.611  1.00  0.00              
ATOM     45  CA  SER    45      -1.047   2.564 -15.114  1.00  0.00              
ATOM     46  CA  ILE    46      -0.519  -0.314 -12.750  1.00  0.00              
ATOM     47  CA  THR    47       3.101  -0.277 -11.763  1.00  0.00              
ATOM     48  CA  PRO    48       4.362  -2.430  -8.954  1.00  0.00              
ATOM     49  CA  THR    49       6.639  -0.725  -6.504  1.00  0.00              
ATOM     50  CA  SER    50       9.470  -3.316  -6.453  1.00  0.00              
ATOM     51  CA  GLU    51       9.480  -3.496 -10.275  1.00  0.00              
ATOM     52  CA  PHE    52       9.205   0.138 -11.176  1.00  0.00              
ATOM     53  CA  VAL    53       7.632   1.025 -14.363  1.00  0.00              
ATOM     54  CA  TRP    54       6.865   4.585 -15.192  1.00  0.00              
ATOM     55  CA  SER    55       4.564   5.132 -18.073  1.00  0.00              
ATOM     56  CA  SER    56       3.438   8.542 -19.180  1.00  0.00              
ATOM     57  CA  VAL    57      -0.000   7.813 -20.444  1.00  0.00              
ATOM     58  CA  ARG    58      -2.011  10.975 -20.646  1.00  0.00              
ATOM     59  CA  ASP    59      -5.374   9.398 -19.755  1.00  0.00              
ATOM     60  CA  ASP    60      -4.084   8.055 -16.378  1.00  0.00              
ATOM     61  CA  VAL    61      -2.517  11.213 -15.087  1.00  0.00              
ATOM     62  CA  MET    62       0.789  12.512 -13.959  1.00  0.00              
ATOM     63  CA  ARG    63       0.555  15.293 -11.338  1.00  0.00              
ATOM     64  CA  LEU    64       3.610  17.639 -11.455  1.00  0.00              
ATOM     65  CA  GLY    65       4.583  19.456  -8.289  1.00  0.00              
ATOM     66  CA  ARG    66       5.365  23.201  -8.695  1.00  0.00              
ATOM     67  CA  GLU    67       9.073  22.928  -7.922  1.00  0.00              
ATOM     68  CA  GLN    68       9.424  20.127 -10.490  1.00  0.00              
ATOM     69  CA  LEU    69       7.604  22.019 -13.289  1.00  0.00              
ATOM     70  CA  GLN    70       9.765  25.129 -12.876  1.00  0.00              
ATOM     71  CA  ILE    71      12.889  22.923 -12.989  1.00  0.00              
ATOM     72  CA  LEU    72      11.649  21.107 -16.168  1.00  0.00              
ATOM     73  CA  LEU    73      10.980  24.495 -17.855  1.00  0.00              
ATOM     74  CA  GLU    74      14.114  26.507 -16.932  1.00  0.00              
ATOM     75  CA  GLN    75      16.724  23.915 -18.000  1.00  0.00              
ATOM     76  CA  ASN    76      14.751  23.174 -21.160  1.00  0.00              
ATOM     77  CA  ILE    77      13.726  19.545 -20.716  1.00  0.00              
ATOM     78  CA  ASN    78      15.696  18.356 -23.803  1.00  0.00              
ATOM     79  CA  GLU    79      18.872  19.777 -22.237  1.00  0.00              
ATOM     80  CA  ARG    80      18.401  18.117 -18.801  1.00  0.00              
ATOM     81  CA  LEU    81      17.751  14.733 -20.474  1.00  0.00              
ATOM     82  CA  ASN    82      19.690  14.189 -23.710  1.00  0.00              
ATOM     83  CA  ILE    83      17.324  13.386 -26.545  1.00  0.00              
ATOM     84  CA  GLY    84      18.663  14.385 -29.894  1.00  0.00              
ATOM     85  CA  GLU    85      18.055  11.284 -31.914  1.00  0.00              
ATOM     86  CA  PRO    86      14.784   9.740 -32.921  1.00  0.00              
ATOM     87  CA  LEU    87      12.935   7.696 -30.386  1.00  0.00              
ATOM     88  CA  LEU    88      11.581   4.692 -32.383  1.00  0.00              
ATOM     89  CA  VAL    89      14.978   4.028 -34.030  1.00  0.00              
ATOM     90  CA  TYR    90      16.956   4.313 -30.725  1.00  0.00              
ATOM     91  CA  LEU    91      14.474   2.073 -28.819  1.00  0.00              
ATOM     92  CA  ARG    92      14.217  -0.702 -31.434  1.00  0.00              
ATOM     93  CA  ARG    93      17.899  -1.515 -32.111  1.00  0.00              
ATOM     94  CA  GLN    94      18.739  -1.770 -28.388  1.00  0.00              
ATOM     95  CA  ASP    95      22.168  -0.106 -28.532  1.00  0.00              
ATOM     96  CA  LEU    96      20.815   3.303 -29.612  1.00  0.00              
ATOM     97  CA  PRO    97      22.074   5.332 -26.625  1.00  0.00              
ATOM     98  CA  GLU    98      25.583   4.058 -27.208  1.00  0.00              
ATOM     99  CA  ILE    99      25.528   4.894 -30.945  1.00  0.00              
ATOM    100  CA  THR   100      24.230   8.440 -30.266  1.00  0.00              
ATOM    101  CA  ALA   101      26.751   9.135 -27.574  1.00  0.00              
ATOM    102  CA  GLN   102      29.826   8.010 -29.568  1.00  0.00              
ATOM    103  CA  ARG   103      28.906  10.097 -32.624  1.00  0.00              
ATOM    104  CA  GLN   104      28.431  13.259 -29.885  1.00  0.00              
ATOM    105  CA  LEU   105      29.202  11.836 -33.097  1.00  0.00              
ATOM    106  CA  ARG   106      31.681  10.124 -35.151  1.00  0.00              
TER                                                                             
END
