
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_2
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_2.T0319.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    K       2      K       2           -
LGA    F       3      F       3           -
LGA    L       4      L       4           -
LGA    T       5      T       5           -
LGA    T       6      T       6           -
LGA    N       7      N       7           -
LGA    F       8      F       8           -
LGA    L       9      L       9           -
LGA    K      10      K      10           -
LGA    C      11      C      11           -
LGA    S      12      S      12           -
LGA    V      13      V      13           -
LGA    K      14      K      14           -
LGA    A      15      A      15           -
LGA    C      16      C      16           -
LGA    D      17      D      17           -
LGA    T      18      T      18           -
LGA    -       -      S      19           -
LGA    S      19      N      20           #
LGA    N      20      D      21          2.309
LGA    D      21      N      22          2.921
LGA    N      22      F      23          2.542
LGA    F      23      P      24          2.841
LGA    P      24      L      25          2.228
LGA    L      25      Q      26          0.817
LGA    Q      26      Y      27          1.443
LGA    Y      27      D      28          0.467
LGA    D      28      G      29          2.206
LGA    G      29      S      30          2.523
LGA    S      30      K      31           #
LGA    K      31      C      32           -
LGA    C      32      Q      33           -
LGA    Q      33      -       -           -
LGA    L      34      -       -           -
LGA    V      35      -       -           -
LGA    Q      36      -       -           -
LGA    D      37      -       -           -
LGA    E      38      -       -           -
LGA    S      39      -       -           -
LGA    I      40      -       -           -
LGA    E      41      -       -           -
LGA    F      42      -       -           -
LGA    N      43      -       -           -
LGA    P      44      -       -           -
LGA    E      45      -       -           -
LGA    F      46      -       -           -
LGA    L      47      -       -           -
LGA    L      48      -       -           -
LGA    N      49      L      34           #
LGA    I      50      V      35           -
LGA    V      51      Q      36           -
LGA    D      52      D      37           -
LGA    R      53      E      38           -
LGA    V      54      S      39           -
LGA    D      55      I      40           -
LGA    W      56      E      41           -
LGA    -       -      F      42           -
LGA    -       -      N      43           -
LGA    -       -      P      44           -
LGA    -       -      E      45           -
LGA    -       -      F      46           -
LGA    -       -      L      47           -
LGA    -       -      L      48           -
LGA    -       -      N      49           -
LGA    -       -      I      50           -
LGA    -       -      V      51           -
LGA    P      57      D      52           #
LGA    -       -      R      53           -
LGA    -       -      V      54           -
LGA    A      58      D      55          1.813
LGA    -       -      W      56           -
LGA    -       -      P      57           -
LGA    V      59      A      58          3.790
LGA    L      60      V      59           -
LGA    T      61      L      60           -
LGA    V      62      T      61           -
LGA    A      63      V      62           -
LGA    A      64      A      63           -
LGA    E      65      A      64           -
LGA    L      66      E      65           -
LGA    G      67      L      66           -
LGA    N      68      G      67           -
LGA    N      69      N      68           -
LGA    A      70      N      69           -
LGA    L      71      A      70           -
LGA    P      72      L      71           -
LGA    P      73      P      72           -
LGA    T      74      P      73          2.621
LGA    K      75      T      74          0.892
LGA    P      76      K      75          4.032
LGA    S      77      P      76          2.710
LGA    F      78      S      77          3.051
LGA    P      79      F      78          4.756
LGA    S      80      P      79           -
LGA    -       -      S      80           -
LGA    -       -      S      81           -
LGA    -       -      I      82           -
LGA    -       -      Q      83           -
LGA    -       -      E      84           -
LGA    -       -      L      85           -
LGA    -       -      T      86           -
LGA    -       -      D      87           -
LGA    S      81      D      88          1.430
LGA    I      82      D      89          1.601
LGA    Q      83      M      90          0.769
LGA    E      84      A      91          0.950
LGA    L      85      I      92          1.562
LGA    T      86      L      93          0.932
LGA    D      87      N      94          0.527
LGA    D      88      D      95          0.798
LGA    D      89      L      96          0.624
LGA    M      90      H      97          0.706
LGA    A      91      T      98          1.246
LGA    I      92      L      99          1.412
LGA    L      93      L     100          1.724
LGA    N      94      L     101          1.540
LGA    D      95      Q     102          4.001
LGA    L      96      T     103           #
LGA    H      97      -       -           -
LGA    T      98      S     104          4.457
LGA    L      99      I     105          4.203
LGA    L     100      A     106           -
LGA    L     101      -       -           -
LGA    Q     102      -       -           -
LGA    T     103      E     107           #
LGA    S     104      G     108           #
LGA    I     105      -       -           -
LGA    A     106      E     109           #
LGA    E     107      M     110           -
LGA    -       -      K     111           -
LGA    -       -      C     112           -
LGA    -       -      R     113           -
LGA    -       -      N     114           -
LGA    -       -      C     115           -
LGA    -       -      G     116           -
LGA    G     108      H     117          4.245
LGA    E     109      I     118          3.000
LGA    M     110      Y     119          2.956
LGA    K     111      Y     120          1.830
LGA    C     112      I     121          2.034
LGA    R     113      K     122          1.916
LGA    -       -      N     123           -
LGA    N     114      G     124          4.193
LGA    C     115      I     125           -
LGA    G     116      -       -           -
LGA    H     117      -       -           -
LGA    I     118      P     126           #
LGA    Y     119      -       -           -
LGA    Y     120      -       -           -
LGA    I     121      -       -           -
LGA    K     122      -       -           -
LGA    N     123      -       -           -
LGA    G     124      -       -           -
LGA    I     125      -       -           -
LGA    P     126      -       -           -
LGA    N     127      N     127           #
LGA    L     128      L     128          3.394
LGA    L     129      L     129          1.695
LGA    L     130      L     130          1.679
LGA    P     131      P     131           #
LGA    P     132      -       -           -
LGA    H     133      P     132          4.948
LGA    L     134      H     133          5.030
LGA    V     135      L     134           #
LGA    -       -      V     135           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  135  135    5.0     47    2.66    10.64     23.175     1.700

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.982041 * X  +   0.021630 * Y  +  -0.187424 * Z  +  16.976999
  Y_new =   0.143355 * X  +  -0.560290 * Y  +  -0.815796 * Z  +   1.284812
  Z_new =  -0.122658 * X  +  -0.828014 * Y  +   0.547127 * Z  +   6.204710 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.986887    2.154706  [ DEG:   -56.5444    123.4556 ]
  Theta =   0.122968    3.018625  [ DEG:     7.0455    172.9545 ]
  Phi   =   2.996639   -0.144953  [ DEG:   171.6948     -8.3052 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_2                                  
REMARK     2: T0319.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_2.T0319.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  135  135   5.0   47   2.66   10.64  23.175
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_2
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      19.099  -9.854   0.084  1.00  0.00              
ATOM      2  CA  LYS     2      15.482  -8.538  -1.355  1.00  0.00              
ATOM      3  CA  PHE     3      13.668  -5.612  -3.831  1.00  0.00              
ATOM      4  CA  LEU     4      14.354  -2.671  -1.816  1.00  0.00              
ATOM      5  CA  THR     5      17.903  -3.681  -0.811  1.00  0.00              
ATOM      6  CA  THR     6      18.916  -4.454  -4.396  1.00  0.00              
ATOM      7  CA  ASN     7      17.553  -1.070  -5.529  1.00  0.00              
ATOM      8  CA  PHE     8      19.352   0.853  -2.826  1.00  0.00              
ATOM      9  CA  LEU     9      22.760  -0.788  -3.540  1.00  0.00              
ATOM     10  CA  LYS    10      22.519  -0.246  -7.297  1.00  0.00              
ATOM     11  CA  CYS    11      21.005   3.262  -7.549  1.00  0.00              
ATOM     12  CA  SER    12      17.641   2.798  -9.156  1.00  0.00              
ATOM     13  CA  VAL    13      15.858   5.861 -10.425  1.00  0.00              
ATOM     14  CA  LYS    14      12.699   6.006  -8.284  1.00  0.00              
ATOM     15  CA  ALA    15      12.356   2.305  -7.556  1.00  0.00              
ATOM     16  CA  CYS    16      13.621   2.013  -3.982  1.00  0.00              
ATOM     17  CA  ASP    17      10.889   0.135  -2.128  1.00  0.00              
ATOM     18  CA  THR    18       9.951   0.803   1.450  1.00  0.00              
ATOM     19  CA  SER    19       7.346  -1.833   2.113  1.00  0.00              
ATOM     20  CA  ASN    20       4.288  -0.779   4.027  1.00  0.00              
ATOM     21  CA  ASP    21       4.029  -3.589   6.515  1.00  0.00              
ATOM     22  CA  ASN    22       7.646  -4.205   7.405  1.00  0.00              
ATOM     23  CA  PHE    23      10.105  -1.916   5.814  1.00  0.00              
ATOM     24  CA  PRO    24      11.612   1.227   6.956  1.00  0.00              
ATOM     25  CA  LEU    25      11.790   4.194   4.539  1.00  0.00              
ATOM     26  CA  GLN    26      14.574   6.613   5.028  1.00  0.00              
ATOM     27  CA  TYR    27      14.215  10.217   4.112  1.00  0.00              
ATOM     28  CA  ASP    28      17.294  12.328   3.732  1.00  0.00              
ATOM     29  CA  GLY    29      16.795  16.038   2.946  1.00  0.00              
ATOM     30  CA  SER    30      18.313  16.012  -0.540  1.00  0.00              
ATOM     31  CA  LYS    31      16.216  12.954  -1.364  1.00  0.00              
ATOM     32  CA  CYS    32      12.897  14.317  -0.226  1.00  0.00              
ATOM     33  CA  GLN    33      13.434  17.386  -2.465  1.00  0.00              
ATOM     34  CA  LEU    34      14.271  15.079  -5.381  1.00  0.00              
ATOM     35  CA  VAL    35      11.191  12.874  -4.850  1.00  0.00              
ATOM     36  CA  GLN    36       8.840  15.875  -4.790  1.00  0.00              
ATOM     37  CA  ASP    37      10.273  17.033  -8.167  1.00  0.00              
ATOM     38  CA  GLU    38      10.233  13.623  -9.858  1.00  0.00              
ATOM     39  CA  SER    39      13.812  13.529 -11.222  1.00  0.00              
ATOM     40  CA  ILE    40      15.095  10.193  -9.900  1.00  0.00              
ATOM     41  CA  GLU    41      18.795  10.941  -9.564  1.00  0.00              
ATOM     42  CA  PHE    42      20.155   8.376  -7.049  1.00  0.00              
ATOM     43  CA  ASN    43      22.906   9.932  -4.944  1.00  0.00              
ATOM     44  CA  PRO    44      25.588   7.361  -4.152  1.00  0.00              
ATOM     45  CA  GLU    45      26.154   8.890  -0.721  1.00  0.00              
ATOM     46  CA  PHE    46      22.539   8.393   0.345  1.00  0.00              
ATOM     47  CA  LEU    47      22.554   4.849  -0.905  1.00  0.00              
ATOM     48  CA  LEU    48      25.768   4.095   0.957  1.00  0.00              
ATOM     49  CA  ASN    49      24.411   5.568   4.146  1.00  0.00              
ATOM     50  CA  ILE    50      21.254   3.436   3.751  1.00  0.00              
ATOM     51  CA  VAL    51      23.379   0.306   3.194  1.00  0.00              
ATOM     52  CA  ASP    52      25.527   0.990   6.177  1.00  0.00              
ATOM     53  CA  ARG    53      22.349   1.080   8.321  1.00  0.00              
ATOM     54  CA  VAL    54      20.510  -1.805   6.777  1.00  0.00              
ATOM     55  CA  ASP    55      19.503  -4.527   9.156  1.00  0.00              
ATOM     56  CA  TRP    56      20.138  -7.569   6.886  1.00  0.00              
ATOM     57  CA  PRO    57      18.597 -10.108   9.170  1.00  0.00              
ATOM     58  CA  ALA    58      15.344  -8.066   9.231  1.00  0.00              
ATOM     59  CA  VAL    59      15.289  -7.770   5.492  1.00  0.00              
ATOM     60  CA  LEU    60      15.819 -11.540   5.047  1.00  0.00              
ATOM     61  CA  THR    61      13.006 -12.179   7.462  1.00  0.00              
ATOM     62  CA  VAL    62      10.682  -9.753   5.744  1.00  0.00              
ATOM     63  CA  ALA    63      11.433 -11.437   2.377  1.00  0.00              
ATOM     64  CA  ALA    64      10.746 -14.885   3.899  1.00  0.00              
ATOM     65  CA  GLU    65       7.432 -13.746   5.363  1.00  0.00              
ATOM     66  CA  LEU    66       6.348 -12.253   2.013  1.00  0.00              
ATOM     67  CA  GLY    67       7.324 -15.219  -0.159  1.00  0.00              
ATOM     68  CA  ASN    68      10.164 -13.389  -1.980  1.00  0.00              
ATOM     69  CA  ASN    69      11.826 -16.148  -3.927  1.00  0.00              
ATOM     70  CA  ALA    70      13.162 -13.775  -6.646  1.00  0.00              
ATOM     71  CA  LEU    71      15.356 -11.440  -4.594  1.00  0.00              
ATOM     72  CA  PRO    72      19.034 -12.372  -4.611  1.00  0.00              
ATOM     73  CA  PRO    73      20.285 -13.837  -1.385  1.00  0.00              
ATOM     74  CA  THR    74      22.960 -11.135  -0.895  1.00  0.00              
ATOM     75  CA  LYS    75      23.513 -11.142   2.835  1.00  0.00              
ATOM     76  CA  PRO    76      27.083 -12.291   3.388  1.00  0.00              
ATOM     77  CA  SER    77      26.942 -14.534   6.482  1.00  0.00              
ATOM     78  CA  PHE    78      29.995 -13.110   8.169  1.00  0.00              
ATOM     79  CA  PRO    79      33.379 -14.715   7.793  1.00  0.00              
ATOM     80  CA  SER    80      35.461 -12.223   5.777  1.00  0.00              
ATOM     81  CA  SER    81      38.423 -12.014   8.154  1.00  0.00              
ATOM     82  CA  ILE    82      36.747 -12.271  11.559  1.00  0.00              
ATOM     83  CA  GLN    83      38.172  -8.944  12.709  1.00  0.00              
ATOM     84  CA  GLU    84      36.830  -6.951   9.755  1.00  0.00              
ATOM     85  CA  LEU    85      33.270  -8.232  10.032  1.00  0.00              
ATOM     86  CA  THR    86      33.210  -7.239  13.703  1.00  0.00              
ATOM     87  CA  ASP    87      34.489  -3.632  13.558  1.00  0.00              
ATOM     88  CA  ASP    88      32.389  -2.108  10.734  1.00  0.00              
ATOM     89  CA  ASP    89      29.228  -3.706  12.153  1.00  0.00              
ATOM     90  CA  MET    90      30.070  -2.217  15.567  1.00  0.00              
ATOM     91  CA  ALA    91      30.231   1.354  14.209  1.00  0.00              
ATOM     92  CA  ILE    92      26.861   0.982  12.415  1.00  0.00              
ATOM     93  CA  LEU    93      25.352  -0.566  15.555  1.00  0.00              
ATOM     94  CA  ASN    94      26.496   2.354  17.775  1.00  0.00              
ATOM     95  CA  ASP    95      24.983   4.871  15.397  1.00  0.00              
ATOM     96  CA  LEU    96      21.693   2.895  15.364  1.00  0.00              
ATOM     97  CA  HIS    97      21.650   2.771  19.173  1.00  0.00              
ATOM     98  CA  THR    98      22.250   6.535  19.314  1.00  0.00              
ATOM     99  CA  LEU    99      19.418   7.173  16.843  1.00  0.00              
ATOM    100  CA  LEU   100      17.022   4.995  18.867  1.00  0.00              
ATOM    101  CA  LEU   101      17.845   6.757  22.164  1.00  0.00              
ATOM    102  CA  GLN   102      17.106  10.189  20.575  1.00  0.00              
ATOM    103  CA  THR   103      13.979   9.437  18.693  1.00  0.00              
ATOM    104  CA  SER   104      10.981  11.784  18.430  1.00  0.00              
ATOM    105  CA  ILE   105       7.765  10.154  17.471  1.00  0.00              
ATOM    106  CA  ALA   106       5.252  12.047  15.462  1.00  0.00              
ATOM    107  CA  GLU   107       2.204  10.293  14.015  1.00  0.00              
ATOM    108  CA  GLY   108       4.053   7.174  12.657  1.00  0.00              
ATOM    109  CA  GLU   109       6.978   9.271  11.598  1.00  0.00              
ATOM    110  CA  MET   110      10.263   8.972  13.399  1.00  0.00              
ATOM    111  CA  LYS   111      12.453  12.032  13.633  1.00  0.00              
ATOM    112  CA  CYS   112      15.949  11.937  15.033  1.00  0.00              
ATOM    113  CA  ARG   113      16.822  14.944  17.177  1.00  0.00              
ATOM    114  CA  ASN   114      20.549  14.714  16.849  1.00  0.00              
ATOM    115  CA  CYS   115      21.189  13.827  13.272  1.00  0.00              
ATOM    116  CA  GLY   116      18.086  15.004  11.555  1.00  0.00              
ATOM    117  CA  HIS   117      17.337  11.798   9.733  1.00  0.00              
ATOM    118  CA  ILE   118      13.768  11.203   8.982  1.00  0.00              
ATOM    119  CA  TYR   119      12.391   7.694   9.114  1.00  0.00              
ATOM    120  CA  TYR   120       9.030   6.955   7.608  1.00  0.00              
ATOM    121  CA  ILE   121       7.240   3.883   8.500  1.00  0.00              
ATOM    122  CA  LYS   122       3.803   3.405   6.996  1.00  0.00              
ATOM    123  CA  ASN   123       2.299   0.058   8.106  1.00  0.00              
ATOM    124  CA  GLY   124       4.289  -0.229  11.278  1.00  0.00              
ATOM    125  CA  ILE   125       4.153   2.962  13.053  1.00  0.00              
ATOM    126  CA  PRO   126       1.022   4.689  14.211  1.00  0.00              
ATOM    127  CA  ASN   127       2.854   6.662  17.010  1.00  0.00              
ATOM    128  CA  LEU   128       5.358   4.098  18.120  1.00  0.00              
ATOM    129  CA  LEU   129       7.139   5.660  21.040  1.00  0.00              
ATOM    130  CA  LEU   130      10.378   3.797  21.914  1.00  0.00              
ATOM    131  CA  PRO   131      11.493   3.798  25.544  1.00  0.00              
ATOM    132  CA  PRO   132      15.042   4.713  26.359  1.00  0.00              
ATOM    133  CA  HIS   133      16.028   0.982  27.067  1.00  0.00              
ATOM    134  CA  LEU   134      14.409  -0.105  23.336  1.00  0.00              
ATOM    135  CA  VAL   135      10.998  -0.703  20.949  1.00  0.00              
TER                                                                             
END
