
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_5
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_5.T0319.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    K       2      -       -           -
LGA    F       3      -       -           -
LGA    L       4      -       -           -
LGA    T       5      -       -           -
LGA    T       6      -       -           -
LGA    N       7      -       -           -
LGA    F       8      -       -           -
LGA    L       9      -       -           -
LGA    K      10      -       -           -
LGA    C      11      K       2          4.822
LGA    S      12      F       3          3.835
LGA    V      13      L       4           #
LGA    K      14      -       -           -
LGA    A      15      -       -           -
LGA    C      16      -       -           -
LGA    D      17      -       -           -
LGA    T      18      -       -           -
LGA    S      19      -       -           -
LGA    N      20      -       -           -
LGA    D      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    P      24      -       -           -
LGA    L      25      T       5          1.853
LGA    Q      26      T       6          3.068
LGA    Y      27      N       7           -
LGA    -       -      F       8           -
LGA    -       -      L       9           -
LGA    -       -      K      10           -
LGA    -       -      C      11           -
LGA    -       -      S      12           -
LGA    -       -      V      13           -
LGA    -       -      K      14           -
LGA    -       -      A      15           -
LGA    -       -      C      16           -
LGA    -       -      D      17           -
LGA    -       -      T      18           -
LGA    -       -      S      19           -
LGA    -       -      N      20           -
LGA    -       -      D      21           -
LGA    -       -      N      22           -
LGA    -       -      F      23           -
LGA    -       -      P      24           -
LGA    -       -      L      25           -
LGA    -       -      Q      26           -
LGA    -       -      Y      27           -
LGA    D      28      D      28           #
LGA    -       -      G      29           -
LGA    -       -      S      30           -
LGA    -       -      K      31           -
LGA    G      29      C      32          4.467
LGA    S      30      Q      33          3.411
LGA    K      31      L      34          4.857
LGA    C      32      V      35          3.864
LGA    Q      33      -       -           -
LGA    L      34      -       -           -
LGA    V      35      -       -           -
LGA    Q      36      Q      36          2.297
LGA    D      37      D      37          4.596
LGA    E      38      E      38          3.536
LGA    S      39      S      39          3.470
LGA    I      40      I      40          2.143
LGA    E      41      E      41          1.608
LGA    F      42      F      42          2.167
LGA    N      43      N      43          2.242
LGA    P      44      P      44          2.369
LGA    E      45      E      45          2.970
LGA    F      46      F      46          2.369
LGA    L      47      L      47          0.997
LGA    L      48      L      48          1.531
LGA    N      49      N      49          1.392
LGA    I      50      I      50          0.946
LGA    V      51      V      51          0.685
LGA    D      52      D      52          0.776
LGA    R      53      R      53          0.919
LGA    V      54      V      54          1.271
LGA    D      55      D      55          0.397
LGA    W      56      W      56          0.558
LGA    P      57      P      57          0.927
LGA    A      58      A      58          0.787
LGA    V      59      V      59          0.473
LGA    L      60      L      60          0.859
LGA    T      61      T      61          0.939
LGA    V      62      V      62          0.657
LGA    A      63      A      63          0.764
LGA    A      64      A      64          1.171
LGA    E      65      E      65          0.576
LGA    L      66      L      66          0.604
LGA    G      67      G      67          1.707
LGA    N      68      N      68          1.842
LGA    N      69      N      69           #
LGA    A      70      -       -           -
LGA    L      71      A      70          3.798
LGA    P      72      L      71           -
LGA    P      73      -       -           -
LGA    T      74      -       -           -
LGA    K      75      -       -           -
LGA    P      76      -       -           -
LGA    S      77      -       -           -
LGA    F      78      -       -           -
LGA    P      79      -       -           -
LGA    S      80      -       -           -
LGA    S      81      -       -           -
LGA    I      82      -       -           -
LGA    Q      83      -       -           -
LGA    E      84      -       -           -
LGA    L      85      -       -           -
LGA    T      86      -       -           -
LGA    D      87      -       -           -
LGA    D      88      -       -           -
LGA    D      89      -       -           -
LGA    M      90      -       -           -
LGA    A      91      -       -           -
LGA    I      92      P      72           #
LGA    L      93      P      73          5.245
LGA    N      94      T      74          5.094
LGA    D      95      K      75           -
LGA    L      96      -       -           -
LGA    H      97      P      76          2.206
LGA    T      98      S      77          2.334
LGA    L      99      F      78          3.046
LGA    L     100      -       -           -
LGA    L     101      P      79           #
LGA    Q     102      S      80          4.568
LGA    T     103      S      81           #
LGA    S     104      I      82          2.214
LGA    I     105      Q      83           #
LGA    A     106      E      84           -
LGA    E     107      -       -           -
LGA    G     108      -       -           -
LGA    E     109      -       -           -
LGA    M     110      -       -           -
LGA    K     111      L      85          1.176
LGA    C     112      -       -           -
LGA    R     113      -       -           -
LGA    N     114      -       -           -
LGA    C     115      -       -           -
LGA    G     116      -       -           -
LGA    H     117      -       -           -
LGA    I     118      T      86          1.524
LGA    Y     119      D      87          1.313
LGA    Y     120      D      88           #
LGA    -       -      D      89           -
LGA    -       -      M      90           -
LGA    I     121      A      91           #
LGA    K     122      I      92           -
LGA    N     123      L      93           -
LGA    G     124      -       -           -
LGA    I     125      -       -           -
LGA    P     126      -       -           -
LGA    N     127      N      94          4.260
LGA    L     128      D      95          2.937
LGA    L     129      L      96           #
LGA    L     130      H      97           -
LGA    P     131      T      98           -
LGA    P     132      L      99           -
LGA    H     133      L     100           -
LGA    L     134      L     101           -
LGA    V     135      Q     102           -
LGA    -       -      T     103           -
LGA    -       -      S     104           -
LGA    -       -      I     105           -
LGA    -       -      A     106           -
LGA    -       -      E     107           -
LGA    -       -      G     108           -
LGA    -       -      E     109           -
LGA    -       -      M     110           -
LGA    -       -      K     111           -
LGA    -       -      C     112           -
LGA    -       -      R     113           -
LGA    -       -      N     114           -
LGA    -       -      C     115           -
LGA    -       -      G     116           -
LGA    -       -      H     117           -
LGA    -       -      I     118           -
LGA    -       -      Y     119           -
LGA    -       -      Y     120           -
LGA    -       -      I     121           -
LGA    -       -      K     122           -
LGA    -       -      N     123           -
LGA    -       -      G     124           -
LGA    -       -      I     125           -
LGA    -       -      P     126           -
LGA    -       -      N     127           -
LGA    -       -      L     128           -
LGA    -       -      L     129           -
LGA    -       -      L     130           -
LGA    -       -      P     131           -
LGA    -       -      P     132           -
LGA    -       -      H     133           -
LGA    -       -      L     134           -
LGA    -       -      V     135           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  135  135    5.0     54    2.64    62.96     28.272     1.969

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.920074 * X  +   0.372411 * Y  +   0.121549 * Z  +  27.269571
  Y_new =   0.388789 * X  +  -0.906109 * Y  +  -0.166761 * Z  +  -5.524952
  Z_new =   0.048033 * X  +   0.200689 * Y  +  -0.978477 * Z  +   9.129889 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.939295   -0.202298  [ DEG:   168.4092    -11.5908 ]
  Theta =  -0.048051   -3.093541  [ DEG:    -2.7531   -177.2469 ]
  Phi   =   0.399804   -2.741789  [ DEG:    22.9071   -157.0929 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_5                                  
REMARK     2: T0319.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_5.T0319.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  135  135   5.0   54   2.64   62.96  28.272
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_5
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      25.946  -5.711   2.056  1.00  0.00              
ATOM      2  CA  LYS     2      29.178  -4.139   2.263  1.00  0.00              
ATOM      3  CA  PHE     3      25.988  -2.599   3.211  1.00  0.00              
ATOM      4  CA  LEU     4      25.676  -5.518   5.772  1.00  0.00              
ATOM      5  CA  THR     5      28.947  -4.841   7.460  1.00  0.00              
ATOM      6  CA  THR     6      28.771  -1.045   7.631  1.00  0.00              
ATOM      7  CA  ASN     7      25.256  -1.064   9.119  1.00  0.00              
ATOM      8  CA  PHE     8      26.139  -3.767  11.572  1.00  0.00              
ATOM      9  CA  LEU     9      29.337  -2.126  12.909  1.00  0.00              
ATOM     10  CA  LYS    10      27.509   1.164  13.342  1.00  0.00              
ATOM     11  CA  CYS    11      24.004   0.558  14.739  1.00  0.00              
ATOM     12  CA  SER    12      23.052   3.551  16.808  1.00  0.00              
ATOM     13  CA  VAL    13      20.649   2.492  19.511  1.00  0.00              
ATOM     14  CA  LYS    14      17.529   4.566  19.533  1.00  0.00              
ATOM     15  CA  ALA    15      14.989   2.127  20.806  1.00  0.00              
ATOM     16  CA  CYS    16      13.115   0.995  17.759  1.00  0.00              
ATOM     17  CA  ASP    17      12.351  -2.649  18.385  1.00  0.00              
ATOM     18  CA  THR    18      12.400  -4.916  15.321  1.00  0.00              
ATOM     19  CA  SER    19      11.342  -8.405  16.461  1.00  0.00              
ATOM     20  CA  ASN    20      13.622 -10.617  14.350  1.00  0.00              
ATOM     21  CA  ASP    21      15.550 -12.371  17.158  1.00  0.00              
ATOM     22  CA  ASN    22      15.852  -9.747  19.823  1.00  0.00              
ATOM     23  CA  PHE    23      16.514  -6.245  19.268  1.00  0.00              
ATOM     24  CA  PRO    24      16.121  -3.624  16.780  1.00  0.00              
ATOM     25  CA  LEU    25      18.569  -0.649  16.930  1.00  0.00              
ATOM     26  CA  GLN    26      17.464   2.480  15.241  1.00  0.00              
ATOM     27  CA  TYR    27      20.046   4.518  13.442  1.00  0.00              
ATOM     28  CA  ASP    28      19.258   8.096  12.517  1.00  0.00              
ATOM     29  CA  GLY    29      21.832   9.960  10.451  1.00  0.00              
ATOM     30  CA  SER    30      22.645  12.604  13.104  1.00  0.00              
ATOM     31  CA  LYS    31      23.163   9.753  15.638  1.00  0.00              
ATOM     32  CA  CYS    32      25.564   7.886  13.345  1.00  0.00              
ATOM     33  CA  GLN    33      27.724  11.042  13.071  1.00  0.00              
ATOM     34  CA  LEU    34      27.770  11.530  16.865  1.00  0.00              
ATOM     35  CA  VAL    35      28.759   7.896  17.421  1.00  0.00              
ATOM     36  CA  GLN    36      31.613   8.066  14.920  1.00  0.00              
ATOM     37  CA  ASP    37      32.997  11.014  16.927  1.00  0.00              
ATOM     38  CA  GLU    38      32.946   9.698  20.488  1.00  0.00              
ATOM     39  CA  SER    39      34.743   6.441  19.539  1.00  0.00              
ATOM     40  CA  ILE    40      32.112   3.981  20.597  1.00  0.00              
ATOM     41  CA  GLU    41      34.069   0.864  21.591  1.00  0.00              
ATOM     42  CA  PHE    42      32.125  -2.084  20.271  1.00  0.00              
ATOM     43  CA  ASN    43      31.569  -4.758  22.927  1.00  0.00              
ATOM     44  CA  PRO    44      32.008  -8.257  21.412  1.00  0.00              
ATOM     45  CA  GLU    45      29.023  -9.692  23.188  1.00  0.00              
ATOM     46  CA  PHE    46      26.558  -6.980  22.142  1.00  0.00              
ATOM     47  CA  LEU    47      27.652  -7.240  18.571  1.00  0.00              
ATOM     48  CA  LEU    48      27.329 -10.968  18.501  1.00  0.00              
ATOM     49  CA  ASN    49      23.857 -11.025  19.926  1.00  0.00              
ATOM     50  CA  ILE    50      22.733  -8.374  17.527  1.00  0.00              
ATOM     51  CA  VAL    51      24.223 -10.070  14.473  1.00  0.00              
ATOM     52  CA  ASP    52      22.662 -13.462  15.175  1.00  0.00              
ATOM     53  CA  ARG    53      19.293 -11.662  15.298  1.00  0.00              
ATOM     54  CA  VAL    54      19.681  -9.358  12.363  1.00  0.00              
ATOM     55  CA  ASP    55      17.000  -9.017   9.787  1.00  0.00              
ATOM     56  CA  TRP    56      19.124  -8.345   6.754  1.00  0.00              
ATOM     57  CA  PRO    57      16.313  -6.896   4.681  1.00  0.00              
ATOM     58  CA  ALA    58      15.616  -4.161   7.276  1.00  0.00              
ATOM     59  CA  VAL    59      19.305  -3.272   7.427  1.00  0.00              
ATOM     60  CA  LEU    60      19.567  -3.069   3.614  1.00  0.00              
ATOM     61  CA  THR    61      16.743  -0.596   3.540  1.00  0.00              
ATOM     62  CA  VAL    62      18.401   1.560   6.244  1.00  0.00              
ATOM     63  CA  ALA    63      21.655   1.515   4.358  1.00  0.00              
ATOM     64  CA  ALA    64      19.965   2.530   1.132  1.00  0.00              
ATOM     65  CA  GLU    65      18.189   5.369   2.820  1.00  0.00              
ATOM     66  CA  LEU    66      21.463   6.825   4.110  1.00  0.00              
ATOM     67  CA  GLY    67      22.988   6.580   0.583  1.00  0.00              
ATOM     68  CA  ASN    68      25.945   4.361   1.252  1.00  0.00              
ATOM     69  CA  ASN    69      28.427   5.605  -1.395  1.00  0.00              
ATOM     70  CA  ALA    70      30.335   2.308  -1.462  1.00  0.00              
ATOM     71  CA  LEU    71      27.107   0.365  -2.273  1.00  0.00              
ATOM     72  CA  PRO    72      26.763  -0.692  -5.853  1.00  0.00              
ATOM     73  CA  PRO    73      24.326   1.164  -8.025  1.00  0.00              
ATOM     74  CA  THR    74      21.968  -1.770  -8.399  1.00  0.00              
ATOM     75  CA  LYS    75      21.418  -3.007  -4.803  1.00  0.00              
ATOM     76  CA  PRO    76      17.672  -2.766  -4.317  1.00  0.00              
ATOM     77  CA  SER    77      16.473  -6.179  -3.368  1.00  0.00              
ATOM     78  CA  PHE    78      18.726  -8.256  -5.646  1.00  0.00              
ATOM     79  CA  PRO    79      16.930 -10.699  -7.927  1.00  0.00              
ATOM     80  CA  SER    80      18.025 -14.159  -6.951  1.00  0.00              
ATOM     81  CA  SER    81      18.826 -15.352 -10.439  1.00  0.00              
ATOM     82  CA  ILE    82      22.569 -15.602 -10.525  1.00  0.00              
ATOM     83  CA  GLN    83      22.770 -13.406 -13.671  1.00  0.00              
ATOM     84  CA  GLU    84      20.996 -10.476 -11.981  1.00  0.00              
ATOM     85  CA  LEU    85      23.480 -10.388  -9.068  1.00  0.00              
ATOM     86  CA  THR    86      26.794 -10.914 -10.759  1.00  0.00              
ATOM     87  CA  ASP    87      27.986 -14.326  -9.547  1.00  0.00              
ATOM     88  CA  ASP    88      31.098 -12.887  -7.901  1.00  0.00              
ATOM     89  CA  ASP    89      28.965 -10.520  -5.773  1.00  0.00              
ATOM     90  CA  MET    90      26.695 -13.316  -4.670  1.00  0.00              
ATOM     91  CA  ALA    91      29.589 -15.593  -3.622  1.00  0.00              
ATOM     92  CA  ILE    92      31.216 -12.854  -1.645  1.00  0.00              
ATOM     93  CA  LEU    93      27.997 -11.895   0.048  1.00  0.00              
ATOM     94  CA  ASN    94      27.223 -15.511   1.125  1.00  0.00              
ATOM     95  CA  ASP    95      30.692 -15.907   2.519  1.00  0.00              
ATOM     96  CA  LEU    96      30.409 -12.662   4.512  1.00  0.00              
ATOM     97  CA  HIS    97      27.071 -13.656   5.943  1.00  0.00              
ATOM     98  CA  THR    98      28.365 -17.033   6.984  1.00  0.00              
ATOM     99  CA  LEU    99      31.478 -15.546   8.672  1.00  0.00              
ATOM    100  CA  LEU   100      29.413 -13.006  10.640  1.00  0.00              
ATOM    101  CA  LEU   101      26.970 -15.683  11.924  1.00  0.00              
ATOM    102  CA  GLN   102      29.818 -17.863  13.314  1.00  0.00              
ATOM    103  CA  THR   103      32.015 -15.276  14.902  1.00  0.00              
ATOM    104  CA  SER   104      34.007 -15.746  18.138  1.00  0.00              
ATOM    105  CA  ILE   105      35.204 -12.560  19.673  1.00  0.00              
ATOM    106  CA  ALA   106      38.284 -12.419  21.695  1.00  0.00              
ATOM    107  CA  GLU   107      39.609  -9.025  22.885  1.00  0.00              
ATOM    108  CA  GLY   108      39.584  -7.228  19.527  1.00  0.00              
ATOM    109  CA  GLU   109      40.441 -10.480  17.678  1.00  0.00              
ATOM    110  CA  MET   110      37.771 -12.069  15.504  1.00  0.00              
ATOM    111  CA  LYS   111      37.984 -15.856  15.093  1.00  0.00              
ATOM    112  CA  CYS   112      35.667 -17.629  12.689  1.00  0.00              
ATOM    113  CA  ARG   113      34.456 -20.994  14.041  1.00  0.00              
ATOM    114  CA  ASN   114      33.633 -22.530  10.693  1.00  0.00              
ATOM    115  CA  CYS   115      36.473 -21.540   8.454  1.00  0.00              
ATOM    116  CA  GLY   116      39.075 -20.391  10.899  1.00  0.00              
ATOM    117  CA  HIS   117      39.896 -17.166   9.314  1.00  0.00              
ATOM    118  CA  ILE   118      41.436 -14.891  11.685  1.00  0.00              
ATOM    119  CA  TYR   119      40.588 -11.155  11.518  1.00  0.00              
ATOM    120  CA  TYR   120      42.454  -8.618  13.565  1.00  0.00              
ATOM    121  CA  ILE   121      40.883  -5.291  14.234  1.00  0.00              
ATOM    122  CA  LYS   122      42.911  -2.807  16.191  1.00  0.00              
ATOM    123  CA  ASN   123      42.269   0.766  15.089  1.00  0.00              
ATOM    124  CA  GLY   124      38.710   0.413  13.933  1.00  0.00              
ATOM    125  CA  ILE   125      37.128  -1.314  16.897  1.00  0.00              
ATOM    126  CA  PRO   126      33.929   0.638  17.387  1.00  0.00              
ATOM    127  CA  ASN   127      33.377   0.253  13.664  1.00  0.00              
ATOM    128  CA  LEU   128      34.326  -3.248  12.519  1.00  0.00              
ATOM    129  CA  LEU   129      37.389  -3.338  10.249  1.00  0.00              
ATOM    130  CA  LEU   130      38.669  -6.848   9.442  1.00  0.00              
ATOM    131  CA  PRO   131      40.312  -7.194   6.003  1.00  0.00              
ATOM    132  CA  PRO   132      38.816  -9.682   3.526  1.00  0.00              
ATOM    133  CA  HIS   133      41.528 -12.020   3.467  1.00  0.00              
ATOM    134  CA  LEU   134      37.510 -10.809   3.229  1.00  0.00              
ATOM    135  CA  VAL   135      34.379  -8.036   3.615  1.00  0.00              
TER                                                                             
END
