
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  157 , name T0322TS168_5
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS168_5.T0322.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      A      12           -
LGA    S       2      I      13           -
LGA    D       3      P      14           -
LGA    D       4      E      15           -
LGA    L       5      G      16           -
LGA    T       6      F      17           -
LGA    D       7      S      18           -
LGA    A       8      Q      19           -
LGA    Q       9      L      20           -
LGA    T      10      -       -           -
LGA    A      11      -       -           -
LGA    A      12      -       -           -
LGA    I      13      -       -           -
LGA    P      14      -       -           -
LGA    E      15      -       -           -
LGA    G      16      -       -           -
LGA    F      17      -       -           -
LGA    S      18      -       -           -
LGA    Q      19      -       -           -
LGA    L      20      -       -           -
LGA    N      21      -       -           -
LGA    W      22      -       -           -
LGA    S      23      -       -           -
LGA    R      24      N      21          4.969
LGA    -       -      W      22           -
LGA    -       -      S      23           -
LGA    G      25      R      24          3.487
LGA    -       -      G      25           -
LGA    F      26      F      26           #
LGA    G      27      G      27          4.401
LGA    R      28      R      28          3.875
LGA    Q      29      Q      29          2.880
LGA    I      30      I      30          2.346
LGA    G      31      G      31          2.412
LGA    -       -      P      32           -
LGA    P      32      L      33          1.437
LGA    L      33      F      34          2.094
LGA    F      34      E      35          2.797
LGA    E      35      H      36           #
LGA    -       -      R      37           -
LGA    -       -      E      38           -
LGA    -       -      G      39           -
LGA    H      36      P      40           #
LGA    R      37      G      41          2.596
LGA    E      38      Q      42           #
LGA    G      39      -       -           -
LGA    P      40      -       -           -
LGA    G      41      -       -           -
LGA    Q      42      -       -           -
LGA    A      43      A      43          1.831
LGA    R      44      R      44          1.570
LGA    L      45      L      45          2.450
LGA    A      46      A      46          2.812
LGA    F      47      F      47          2.732
LGA    R      48      R      48          2.045
LGA    V      49      V      49          0.938
LGA    E      50      E      50          1.739
LGA    E      51      E      51          3.227
LGA    H      52      H      52          2.945
LGA    H      53      H      53          1.674
LGA    T      54      T      54          1.167
LGA    N      55      N      55          2.679
LGA    G      56      G      56          4.161
LGA    L      57      L      57          1.911
LGA    G      58      G      58          3.129
LGA    N      59      N      59          3.291
LGA    C      60      C      60          1.486
LGA    H      61      H      61          2.857
LGA    G      62      G      62          2.365
LGA    G      63      G      63          0.500
LGA    M      64      M      64          1.207
LGA    L      65      L      65          1.929
LGA    M      66      M      66          1.617
LGA    S      67      S      67          0.841
LGA    F      68      F      68          0.705
LGA    A      69      A      69          2.155
LGA    D      70      D      70          2.485
LGA    M      71      M      71          1.619
LGA    A      72      A      72          2.328
LGA    W      73      W      73          4.958
LGA    G      74      G      74          5.074
LGA    R      75      R      75          2.826
LGA    I      76      I      76          3.364
LGA    I      77      I      77          4.090
LGA    S      78      S      78          2.983
LGA    L      79      L      79          2.357
LGA    Q      80      Q      80          4.122
LGA    K      81      K      81          4.220
LGA    S      82      S      82          5.063
LGA    Y      83      Y      83          2.919
LGA    S      84      S      84          1.795
LGA    W      85      W      85          0.582
LGA    V      86      V      86          1.455
LGA    T      87      T      87          0.897
LGA    V      88      V      88          1.238
LGA    R      89      R      89          0.467
LGA    L      90      L      90          0.791
LGA    M      91      M      91          1.362
LGA    C      92      C      92          1.561
LGA    D      93      D      93          2.095
LGA    F      94      F      94          2.373
LGA    L      95      L      95          2.321
LGA    S      96      S      96          1.326
LGA    G      97      G      97          0.721
LGA    A      98      A      98          0.700
LGA    K      99      K      99          1.791
LGA    L     100      L     100          1.823
LGA    G     101      G     101          3.037
LGA    D     102      D     102          1.800
LGA    W     103      W     103          2.956
LGA    V     104      V     104          1.268
LGA    E     105      E     105          1.083
LGA    G     106      G     106          0.645
LGA    E     107      E     107          0.850
LGA    G     108      G     108          2.810
LGA    E     109      E     109          2.263
LGA    L     110      L     110          1.726
LGA    I     111      I     111          1.969
LGA    S     112      S     112          2.699
LGA    E     113      E     113          3.370
LGA    E     114      E     114          4.934
LGA    D     115      D     115          5.473
LGA    -       -      M     116           -
LGA    M     116      L     117          2.649
LGA    L     117      F     118          2.141
LGA    F     118      T     119          4.382
LGA    T     119      V     120          0.765
LGA    V     120      R     121          3.701
LGA    R     121      G     122          1.492
LGA    G     122      R     123          0.496
LGA    R     123      I     124          3.972
LGA    I     124      W     125          1.062
LGA    W     125      -       -           -
LGA    A     126      A     126          1.941
LGA    G     127      G     127          1.701
LGA    E     128      E     128          1.201
LGA    R     129      R     129          2.149
LGA    T     130      T     130          1.284
LGA    L     131      L     131          1.126
LGA    I     132      I     132          2.339
LGA    T     133      T     133          2.668
LGA    G     134      G     134          2.198
LGA    T     135      T     135          1.391
LGA    G     136      G     136          1.591
LGA    V     137      V     137          1.912
LGA    F     138      F     138          2.204
LGA    K     139      K     139          2.390
LGA    A     140      A     140          2.937
LGA    L     141      L     141          4.160
LGA    S     142      S     142          5.925
LGA    A     143      -       -           -
LGA    R     144      -       -           -
LGA    K     145      -       -           -
LGA    P     146      -       -           -
LGA    R     147      -       -           -
LGA    P     148      A     143           #
LGA    G     149      R     144           -
LGA    E     150      K     145           -
LGA    L     151      -       -           -
LGA    A     152      -       -           -
LGA    Y     153      P     146           #
LGA    K     154      -       -           -
LGA    E     155      -       -           -
LGA    E     156      R     147           #
LGA    A     157      P     148          2.191
LGA    -       -      G     149           -
LGA    -       -      E     150           -
LGA    -       -      L     151           -
LGA    -       -      A     152           -
LGA    -       -      Y     153           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  157  142    5.0    111    2.64    85.59     49.742     4.058

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.698329 * X  +  -0.660815 * Y  +   0.275063 * Z  +   9.486523
  Y_new =  -0.541327 * X  +  -0.236161 * Y  +   0.806965 * Z  +  -9.520561
  Z_new =  -0.468296 * X  +  -0.712426 * Y  +  -0.522635 * Z  + -15.445298 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.203718    0.937875  [ DEG:  -126.2637     53.7363 ]
  Theta =   0.487361    2.654231  [ DEG:    27.9237    152.0762 ]
  Phi   =  -0.659419    2.482173  [ DEG:   -37.7819    142.2181 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS168_5                                  
REMARK     2: T0322.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0322TS168_5.T0322.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  157  142   5.0  111   2.64   85.59  49.742
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS168_5
PFRMAT TS
TARGET T0322
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      28.298 -31.693 -15.164  1.00 25.00           C
ATOM      2  CA  SER     2      26.506 -33.728 -12.472  1.00 25.00           C
ATOM      3  CA  ASP     3      23.001 -32.446 -11.557  1.00 25.00           C
ATOM      4  CA  ASP     4      20.707 -33.484  -8.666  1.00 25.00           C
ATOM      5  CA  LEU     5      21.875 -30.190  -7.220  1.00 25.00           C
ATOM      6  CA  THR     6      19.939 -31.074  -4.060  1.00 25.00           C
ATOM      7  CA  ASP     7      22.996 -30.486  -1.832  1.00 25.00           C
ATOM      8  CA  ALA     8      25.764 -28.776   0.190  1.00 25.00           C
ATOM      9  CA  GLN     9      25.616 -25.735  -2.132  1.00 25.00           C
ATOM     10  CA  THR    10      21.811 -25.574  -1.718  1.00 25.00           C
ATOM     11  CA  ALA    11      22.040 -24.863   2.006  1.00 25.00           C
ATOM     12  CA  ALA    12      18.509 -26.349   2.282  1.00 25.00           C
ATOM     13  CA  ILE    13      16.679 -23.304   3.682  1.00 25.00           C
ATOM     14  CA  PRO    14      18.880 -20.297   4.427  1.00 25.00           C
ATOM     15  CA  GLU    15      20.347 -17.193   5.953  1.00 25.00           C
ATOM     16  CA  GLY    16      18.174 -16.163   8.852  1.00 25.00           C
ATOM     17  CA  PHE    17      14.479 -16.953   8.392  1.00 25.00           C
ATOM     18  CA  SER    18      13.400 -13.478   7.280  1.00 25.00           C
ATOM     19  CA  GLN    19      16.097 -10.891   7.645  1.00 25.00           C
ATOM     20  CA  LEU    20      13.179  -8.387   7.735  1.00 25.00           C
ATOM     21  CA  ASN    21      13.604  -4.620   7.188  1.00 25.00           C
ATOM     22  CA  TRP    22      11.626  -3.779   3.997  1.00 25.00           C
ATOM     23  CA  SER    23      14.390  -1.708   2.473  1.00 25.00           C
ATOM     24  CA  ARG    24      13.042  -2.730  -0.996  1.00 25.00           C
ATOM     25  CA  GLY    25       9.469  -1.701  -1.934  1.00 25.00           C
ATOM     26  CA  PHE    26       8.946  -2.102  -5.624  1.00 25.00           C
ATOM     27  CA  GLY    27       8.661  -5.891  -6.100  1.00 25.00           C
ATOM     28  CA  ARG    28       6.554  -6.158  -2.913  1.00 25.00           C
ATOM     29  CA  GLN    29       4.273  -3.344  -4.154  1.00 25.00           C
ATOM     30  CA  ILE    30       4.085  -4.542  -7.806  1.00 25.00           C
ATOM     31  CA  GLY    31       4.350  -8.275  -7.131  1.00 25.00           C
ATOM     32  CA  PRO    32       7.123 -10.127  -8.963  1.00 25.00           C
ATOM     33  CA  LEU    33       7.290 -13.805  -9.657  1.00 25.00           C
ATOM     34  CA  PHE    34       9.940 -15.116 -12.023  1.00 25.00           C
ATOM     35  CA  GLU    35       8.840 -18.638 -13.053  1.00 25.00           C
ATOM     36  CA  HIS    36      11.010 -17.984 -16.132  1.00 25.00           C
ATOM     37  CA  ARG    37      12.284 -17.090 -19.665  1.00 25.00           C
ATOM     38  CA  GLU    38      12.780 -20.098 -21.954  1.00 25.00           C
ATOM     39  CA  GLY    39      16.185 -19.742 -23.617  1.00 25.00           C
ATOM     40  CA  PRO    40      18.480 -17.575 -21.531  1.00 25.00           C
ATOM     41  CA  GLY    41      17.188 -14.815 -23.833  1.00 25.00           C
ATOM     42  CA  GLN    42      15.307 -12.970 -21.108  1.00 25.00           C
ATOM     43  CA  ALA    43      14.202 -11.911 -17.608  1.00 25.00           C
ATOM     44  CA  ARG    44      10.643 -12.807 -16.438  1.00 25.00           C
ATOM     45  CA  LEU    45       9.467 -10.052 -14.038  1.00 25.00           C
ATOM     46  CA  ALA    46       5.836 -11.167 -13.700  1.00 25.00           C
ATOM     47  CA  PHE    47       2.690 -10.468 -11.607  1.00 25.00           C
ATOM     48  CA  ARG    48       0.847 -13.025  -9.478  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.751 -11.852  -9.033  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.177 -12.027  -5.285  1.00 25.00           C
ATOM     51  CA  GLU    51      -6.875 -11.378  -5.039  1.00 25.00           C
ATOM     52  CA  HIS    52      -6.205  -7.844  -3.723  1.00 25.00           C
ATOM     53  CA  HIS    53      -3.843  -7.171  -6.662  1.00 25.00           C
ATOM     54  CA  THR    54      -6.985  -6.335  -8.610  1.00 25.00           C
ATOM     55  CA  ASN    55      -8.887  -3.125  -9.155  1.00 25.00           C
ATOM     56  CA  GLY    56     -12.668  -3.098  -9.850  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.224  -6.422  -8.726  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.780  -9.353 -10.673  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.983  -7.855 -13.708  1.00 25.00           C
ATOM     60  CA  CYS    60      -7.220  -8.422 -13.515  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.932  -5.561 -15.961  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.275  -3.261 -18.572  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.611  -1.341 -15.706  1.00 25.00           C
ATOM     64  CA  MET    64      -2.175  -4.609 -14.318  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.821  -5.515 -17.783  1.00 25.00           C
ATOM     66  CA  MET    66       0.790  -2.054 -18.087  1.00 25.00           C
ATOM     67  CA  SER    67       2.393  -2.471 -14.633  1.00 25.00           C
ATOM     68  CA  PHE    68       3.742  -5.908 -15.648  1.00 25.00           C
ATOM     69  CA  ALA    69       5.188  -4.418 -18.866  1.00 25.00           C
ATOM     70  CA  ASP    70       6.853  -1.619 -16.851  1.00 25.00           C
ATOM     71  CA  MET    71       8.346  -4.202 -14.451  1.00 25.00           C
ATOM     72  CA  ALA    72       9.679  -6.225 -17.417  1.00 25.00           C
ATOM     73  CA  TRP    73      11.240  -3.060 -18.906  1.00 25.00           C
ATOM     74  CA  GLY    74      12.883  -2.257 -15.540  1.00 25.00           C
ATOM     75  CA  ARG    75      14.269  -5.822 -15.338  1.00 25.00           C
ATOM     76  CA  ILE    76      15.662  -5.508 -18.892  1.00 25.00           C
ATOM     77  CA  ILE    77      17.309  -2.173 -17.978  1.00 25.00           C
ATOM     78  CA  SER    78      18.860  -3.766 -14.859  1.00 25.00           C
ATOM     79  CA  LEU    79      20.191  -6.668 -16.974  1.00 25.00           C
ATOM     80  CA  GLN    80      21.718  -4.352 -19.567  1.00 25.00           C
ATOM     81  CA  LYS    81      23.464  -2.613 -16.664  1.00 25.00           C
ATOM     82  CA  SER    82      23.413   1.233 -16.399  1.00 25.00           C
ATOM     83  CA  TYR    83      21.986   1.891 -19.871  1.00 25.00           C
ATOM     84  CA  SER    84      18.990   3.181 -17.949  1.00 25.00           C
ATOM     85  CA  TRP    85      15.770   2.256 -19.720  1.00 25.00           C
ATOM     86  CA  VAL    86      13.158   4.557 -21.221  1.00 25.00           C
ATOM     87  CA  THR    87       9.774   2.888 -20.978  1.00 25.00           C
ATOM     88  CA  VAL    88       9.369   3.656 -24.691  1.00 25.00           C
ATOM     89  CA  ARG    89       6.212   2.339 -26.291  1.00 25.00           C
ATOM     90  CA  LEU    90       3.323   0.289 -24.778  1.00 25.00           C
ATOM     91  CA  MET    91       0.183  -1.041 -26.433  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.952  -3.606 -24.529  1.00 25.00           C
ATOM     93  CA  ASP    93      -5.057  -5.791 -25.135  1.00 25.00           C
ATOM     94  CA  PHE    94      -6.508  -7.048 -21.890  1.00 25.00           C
ATOM     95  CA  LEU    95      -8.251 -10.067 -23.480  1.00 25.00           C
ATOM     96  CA  SER    96      -9.628 -12.705 -21.163  1.00 25.00           C
ATOM     97  CA  GLY    97      -8.595 -12.611 -17.521  1.00 25.00           C
ATOM     98  CA  ALA    98      -6.946 -13.758 -14.271  1.00 25.00           C
ATOM     99  CA  LYS    99      -9.664 -15.290 -12.040  1.00 25.00           C
ATOM    100  CA  LEU   100      -7.800 -15.209  -8.696  1.00 25.00           C
ATOM    101  CA  GLY   101      -6.294 -18.696  -8.423  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.682 -18.023 -11.820  1.00 25.00           C
ATOM    103  CA  TRP   103      -1.960 -15.479 -12.833  1.00 25.00           C
ATOM    104  CA  VAL   104       1.030 -14.178 -14.825  1.00 25.00           C
ATOM    105  CA  GLU   105       4.126 -15.503 -16.633  1.00 25.00           C
ATOM    106  CA  GLY   106       4.709 -12.267 -18.545  1.00 25.00           C
ATOM    107  CA  GLU   107       7.624 -13.021 -20.870  1.00 25.00           C
ATOM    108  CA  GLY   108      10.728 -10.883 -21.063  1.00 25.00           C
ATOM    109  CA  GLU   109      11.206 -12.373 -24.481  1.00 25.00           C
ATOM    110  CA  LEU   110      13.508 -10.261 -26.735  1.00 25.00           C
ATOM    111  CA  ILE   111      12.832 -10.063 -30.430  1.00 25.00           C
ATOM    112  CA  SER   112      15.978  -8.348 -31.695  1.00 25.00           C
ATOM    113  CA  GLU   113      16.261  -4.830 -33.153  1.00 25.00           C
ATOM    114  CA  GLU   114      16.028  -2.374 -35.959  1.00 25.00           C
ATOM    115  CA  ASP   115      16.659   0.178 -33.244  1.00 25.00           C
ATOM    116  CA  MET   116      16.235  -0.929 -29.653  1.00 25.00           C
ATOM    117  CA  LEU   117      16.052  -4.156 -27.589  1.00 25.00           C
ATOM    118  CA  PHE   118      13.192  -5.385 -25.422  1.00 25.00           C
ATOM    119  CA  THR   119       9.968  -6.589 -27.038  1.00 25.00           C
ATOM    120  CA  VAL   120       7.639  -8.362 -24.695  1.00 25.00           C
ATOM    121  CA  ARG   121       5.517 -10.973 -26.364  1.00 25.00           C
ATOM    122  CA  GLY   122       3.314 -11.859 -23.394  1.00 25.00           C
ATOM    123  CA  ARG   123       3.203 -15.499 -22.305  1.00 25.00           C
ATOM    124  CA  ILE   124       0.224 -14.850 -20.014  1.00 25.00           C
ATOM    125  CA  TRP   125       0.302 -18.255 -18.451  1.00 25.00           C
ATOM    126  CA  ALA   126      -3.000 -19.140 -16.802  1.00 25.00           C
ATOM    127  CA  GLY   127      -2.005 -22.804 -17.384  1.00 25.00           C
ATOM    128  CA  GLU   128      -3.700 -22.542 -20.828  1.00 25.00           C
ATOM    129  CA  ARG   129      -2.978 -19.300 -22.678  1.00 25.00           C
ATOM    130  CA  THR   130      -3.352 -15.740 -23.955  1.00 25.00           C
ATOM    131  CA  LEU   131      -4.668 -13.504 -21.213  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.497 -10.397 -20.995  1.00 25.00           C
ATOM    133  CA  THR   133      -1.218  -9.186 -24.364  1.00 25.00           C
ATOM    134  CA  GLY   134       1.908  -7.194 -25.154  1.00 25.00           C
ATOM    135  CA  THR   135       4.360  -4.917 -26.942  1.00 25.00           C
ATOM    136  CA  GLY   136       6.876  -3.266 -24.542  1.00 25.00           C
ATOM    137  CA  VAL   137      10.051  -1.388 -25.464  1.00 25.00           C
ATOM    138  CA  PHE   138      12.812  -0.981 -22.862  1.00 25.00           C
ATOM    139  CA  LYS   139      15.524   0.829 -24.784  1.00 25.00           C
ATOM    140  CA  ALA   140      19.249   0.021 -24.402  1.00 25.00           C
ATOM    141  CA  LEU   141      20.746   3.516 -24.509  1.00 25.00           C
ATOM    142  CA  SER   142      21.730   7.156 -24.089  1.00 25.00           C
ATOM    143  CA  ALA   143      23.393   9.884 -22.141  1.00 25.00           C
ATOM    144  CA  ARG   144      26.789   9.252 -20.581  1.00 25.00           C
ATOM    145  CA  LYS   145      27.602   7.158 -23.606  1.00 25.00           C
ATOM    146  CA  PRO   146      28.310   3.697 -25.174  1.00 25.00           C
ATOM    147  CA  ARG   147      27.022   1.196 -27.687  1.00 25.00           C
ATOM    148  CA  PRO   148      27.695  -1.624 -25.312  1.00 25.00           C
ATOM    149  CA  GLY   149      25.739  -4.925 -25.006  1.00 25.00           C
ATOM    150  CA  GLU   150      25.874  -8.069 -22.842  1.00 25.00           C
ATOM    151  CA  LEU   151      22.187  -8.880 -22.111  1.00 25.00           C
ATOM    152  CA  ALA   152      22.400 -10.962 -18.987  1.00 25.00           C
ATOM    153  CA  TYR   153      23.317 -11.581 -15.396  1.00 25.00           C
ATOM    154  CA  LYS   154      26.300 -13.713 -16.550  1.00 25.00           C
ATOM    155  CA  GLU   155      28.174 -12.665 -13.400  1.00 25.00           C
ATOM    156  CA  GLU   156      25.917 -11.350 -10.633  1.00 25.00           C
ATOM    157  CA  ALA   157      22.343 -12.549 -10.456  1.00 25.00           C
TER
END
